Query psy786
Match_columns 176
No_of_seqs 182 out of 1627
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 20:40:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy786.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/786hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3959 Transketolase, N-termi 100.0 3.3E-38 7.2E-43 244.4 17.0 165 9-174 74-239 (243)
2 cd02012 TPP_TK Thiamine pyroph 100.0 1.6E-36 3.5E-41 244.9 18.7 165 10-175 61-226 (255)
3 PF00456 Transketolase_N: Tran 100.0 2E-35 4.3E-40 245.8 13.8 165 10-175 66-242 (332)
4 PRK12754 transketolase; Review 100.0 6.5E-35 1.4E-39 260.9 18.0 165 10-175 69-245 (663)
5 TIGR00232 tktlase_bact transke 100.0 4.9E-34 1.1E-38 255.9 17.6 166 9-175 64-241 (653)
6 PRK12753 transketolase; Review 100.0 7.3E-34 1.6E-38 254.9 18.0 165 10-175 69-245 (663)
7 COG0021 TktA Transketolase [Ca 100.0 1E-33 2.2E-38 246.3 17.0 166 9-175 70-247 (663)
8 cd02017 TPP_E1_EcPDC_like Thia 100.0 3.6E-33 7.7E-38 234.0 18.6 167 9-175 70-316 (386)
9 PRK05899 transketolase; Review 100.0 5.7E-33 1.2E-37 248.4 18.0 164 10-175 73-247 (624)
10 PLN02790 transketolase 100.0 1.6E-32 3.4E-37 246.3 19.0 165 10-175 59-237 (654)
11 PTZ00089 transketolase; Provis 100.0 1E-32 2.3E-37 247.6 17.6 165 10-175 71-248 (661)
12 TIGR03186 AKGDH_not_PDH alpha- 100.0 1.2E-31 2.6E-36 243.6 18.3 167 9-175 141-387 (889)
13 cd02007 TPP_DXS Thiamine pyrop 100.0 2.1E-31 4.6E-36 207.3 16.4 151 13-175 37-189 (195)
14 KOG0523|consensus 100.0 2.3E-31 5E-36 229.6 17.1 165 10-174 75-239 (632)
15 TIGR00759 aceE pyruvate dehydr 100.0 4E-31 8.7E-36 238.3 18.7 167 9-175 141-387 (885)
16 PRK13012 2-oxoacid dehydrogena 100.0 2.4E-30 5.1E-35 235.9 18.5 167 9-175 155-401 (896)
17 PRK09405 aceE pyruvate dehydro 100.0 1.6E-29 3.5E-34 229.8 18.3 167 9-175 147-393 (891)
18 PRK05444 1-deoxy-D-xylulose-5- 100.0 1.5E-29 3.3E-34 224.7 16.5 159 12-175 78-241 (580)
19 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 9.3E-29 2E-33 203.3 15.9 169 5-175 49-227 (293)
20 COG1071 AcoA Pyruvate/2-oxoglu 100.0 3E-29 6.4E-34 208.6 12.9 170 5-175 81-260 (358)
21 TIGR03182 PDH_E1_alph_y pyruva 100.0 3E-28 6.5E-33 202.1 15.3 171 3-175 53-233 (315)
22 CHL00149 odpA pyruvate dehydro 100.0 3.7E-28 8.1E-33 203.3 15.6 172 3-175 71-258 (341)
23 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 1.8E-27 3.8E-32 212.5 16.4 165 5-175 63-273 (617)
24 TIGR03181 PDH_E1_alph_x pyruva 100.0 4E-27 8.7E-32 197.2 15.9 169 2-175 73-245 (341)
25 PLN02374 pyruvate dehydrogenas 99.9 1E-26 2.2E-31 199.3 15.3 171 4-175 138-324 (433)
26 PF00676 E1_dh: Dehydrogenase 99.9 1.4E-27 3E-32 196.9 9.5 161 13-175 56-224 (300)
27 PLN02234 1-deoxy-D-xylulose-5- 99.9 2.8E-26 6E-31 204.1 16.0 159 12-175 138-320 (641)
28 cd02011 TPP_PK Thiamine pyroph 99.9 4.2E-26 9E-31 179.9 14.2 149 10-163 7-171 (227)
29 cd02004 TPP_BZL_OCoD_HPCL Thia 99.9 1.4E-26 3.1E-31 176.5 11.2 116 50-175 45-171 (172)
30 cd02013 TPP_Xsc_like Thiamine 99.9 1E-26 2.2E-31 181.0 9.5 117 50-175 50-178 (196)
31 PRK12571 1-deoxy-D-xylulose-5- 99.9 8.5E-26 1.8E-30 202.4 16.4 159 12-175 80-282 (641)
32 PLN02269 Pyruvate dehydrogenas 99.9 1.5E-25 3.2E-30 188.6 15.2 170 2-175 80-258 (362)
33 cd02006 TPP_Gcl Thiamine pyrop 99.9 3E-26 6.6E-31 179.1 10.0 117 50-175 54-193 (202)
34 cd02003 TPP_IolD Thiamine pyro 99.9 1.4E-25 3.1E-30 175.7 11.1 116 50-175 45-183 (205)
35 cd02010 TPP_ALS Thiamine pyrop 99.9 2.1E-25 4.4E-30 171.2 10.9 118 48-175 43-169 (177)
36 cd02016 TPP_E1_OGDC_like Thiam 99.9 7.2E-25 1.6E-29 176.8 14.2 170 6-175 46-245 (265)
37 PLN02582 1-deoxy-D-xylulose-5- 99.9 1.2E-24 2.6E-29 195.0 16.1 159 12-175 105-319 (677)
38 PRK12315 1-deoxy-D-xylulose-5- 99.9 2.1E-24 4.6E-29 191.7 16.8 157 12-175 74-242 (581)
39 cd02015 TPP_AHAS Thiamine pyro 99.9 2.4E-25 5.1E-30 171.8 9.0 116 50-175 47-173 (186)
40 cd02001 TPP_ComE_PpyrDC Thiami 99.9 1.7E-24 3.7E-29 163.1 11.1 115 51-176 40-155 (157)
41 cd02002 TPP_BFDC Thiamine pyro 99.9 1.3E-24 2.9E-29 166.2 10.0 113 53-175 49-178 (178)
42 cd02008 TPP_IOR_alpha Thiamine 99.9 2.8E-24 6.1E-29 164.9 11.6 118 51-175 49-176 (178)
43 cd00568 TPP_enzymes Thiamine p 99.9 2.5E-24 5.3E-29 162.5 11.0 120 46-175 39-168 (168)
44 PF02775 TPP_enzyme_C: Thiamin 99.9 3.9E-25 8.5E-30 165.5 5.8 117 49-173 24-153 (153)
45 PRK06163 hypothetical protein; 99.9 4.6E-24 9.9E-29 166.8 11.6 115 51-175 55-172 (202)
46 cd03371 TPP_PpyrDC Thiamine py 99.9 5.7E-24 1.2E-28 164.7 11.8 115 51-175 46-162 (188)
47 cd02009 TPP_SHCHC_synthase Thi 99.9 2.5E-24 5.3E-29 164.8 9.4 116 49-175 47-174 (175)
48 cd02005 TPP_PDC_IPDC Thiamine 99.9 7.3E-24 1.6E-28 163.3 11.7 118 49-175 46-173 (183)
49 cd03375 TPP_OGFOR Thiamine pyr 99.9 5.7E-24 1.2E-28 165.3 10.6 156 6-175 5-183 (193)
50 cd02014 TPP_POX Thiamine pyrop 99.9 1.5E-23 3.3E-28 160.7 12.3 117 49-175 47-172 (178)
51 COG0028 IlvB Thiamine pyrophos 99.9 7.3E-24 1.6E-28 187.0 10.2 124 42-175 397-530 (550)
52 TIGR01504 glyox_carbo_lig glyo 99.9 7.7E-24 1.7E-28 188.6 8.9 117 50-175 415-554 (588)
53 PRK05261 putative phosphoketol 99.9 1.5E-22 3.2E-27 182.6 16.3 149 9-162 86-250 (785)
54 TIGR03846 sulfopy_beta sulfopy 99.9 5.2E-23 1.1E-27 158.4 11.3 113 51-175 40-155 (181)
55 PRK12474 hypothetical protein; 99.9 3.4E-23 7.3E-28 182.0 11.1 116 50-175 386-518 (518)
56 PRK06965 acetolactate synthase 99.9 2.4E-23 5.2E-28 185.4 9.8 118 49-175 433-561 (587)
57 PRK08979 acetolactate synthase 99.9 2.1E-23 4.6E-28 185.2 9.2 117 50-175 418-545 (572)
58 PRK06154 hypothetical protein; 99.9 4.1E-23 8.9E-28 183.2 10.9 117 50-175 428-554 (565)
59 cd03372 TPP_ComE Thiamine pyro 99.9 9.5E-23 2.1E-27 156.7 11.4 113 51-175 40-154 (179)
60 PRK09107 acetolactate synthase 99.9 2.9E-23 6.3E-28 185.1 9.3 117 49-175 426-553 (595)
61 PF13292 DXP_synthase_N: 1-deo 99.9 4.5E-23 9.8E-28 164.7 9.3 165 4-174 62-269 (270)
62 PRK07979 acetolactate synthase 99.9 3.6E-23 7.7E-28 183.8 9.7 118 49-175 417-547 (574)
63 PRK07586 hypothetical protein; 99.9 6.8E-23 1.5E-27 179.8 10.4 116 50-175 382-514 (514)
64 TIGR02418 acolac_catab acetola 99.9 1.2E-22 2.5E-27 179.3 11.6 117 49-175 404-529 (539)
65 TIGR02720 pyruv_oxi_spxB pyruv 99.9 1.8E-22 4E-27 179.4 12.9 117 50-175 405-531 (575)
66 PLN02573 pyruvate decarboxylas 99.9 1.3E-22 2.8E-27 180.5 11.6 119 48-175 423-551 (578)
67 PRK09124 pyruvate dehydrogenas 99.9 1.4E-22 3.1E-27 180.0 11.8 116 50-175 405-529 (574)
68 PRK05858 hypothetical protein; 99.9 8.6E-23 1.9E-27 180.3 10.1 116 50-175 404-529 (542)
69 TIGR03393 indolpyr_decarb indo 99.9 1.4E-22 3.1E-27 178.8 11.0 117 49-175 400-526 (539)
70 PRK06466 acetolactate synthase 99.9 9.1E-23 2E-27 181.2 9.8 117 50-175 420-547 (574)
71 TIGR03457 sulphoacet_xsc sulfo 99.9 8.4E-23 1.8E-27 181.6 9.1 118 49-175 426-556 (579)
72 PRK07524 hypothetical protein; 99.9 4.8E-22 1E-26 175.3 12.1 117 49-175 403-528 (535)
73 PRK06725 acetolactate synthase 99.9 2.1E-22 4.5E-27 178.9 9.9 117 49-175 418-544 (570)
74 PRK06048 acetolactate synthase 99.9 3.5E-22 7.5E-27 177.1 11.2 116 50-175 411-537 (561)
75 KOG0225|consensus 99.9 3.9E-22 8.4E-27 162.5 10.2 124 47-174 159-285 (394)
76 PRK06457 pyruvate dehydrogenas 99.9 4.4E-22 9.5E-27 176.1 11.4 117 50-175 393-518 (549)
77 cd02018 TPP_PFOR Thiamine pyro 99.9 6.3E-22 1.4E-26 158.3 11.1 120 51-174 62-201 (237)
78 PRK06456 acetolactate synthase 99.9 4E-22 8.6E-27 177.0 10.8 116 50-175 418-544 (572)
79 PRK11269 glyoxylate carboligas 99.9 3.4E-22 7.4E-27 178.1 10.3 117 50-175 416-555 (591)
80 PRK06546 pyruvate dehydrogenas 99.9 9.3E-22 2E-26 175.0 13.0 117 50-176 405-530 (578)
81 PRK08322 acetolactate synthase 99.9 8.4E-22 1.8E-26 174.0 12.5 117 49-175 402-527 (547)
82 PRK08611 pyruvate oxidase; Pro 99.9 5.9E-22 1.3E-26 176.2 11.5 117 49-175 404-529 (576)
83 PLN02470 acetolactate synthase 99.9 4.6E-22 1E-26 177.1 10.5 117 49-175 422-556 (585)
84 PRK07418 acetolactate synthase 99.9 4.8E-22 1E-26 178.0 10.6 116 50-175 431-558 (616)
85 cd03376 TPP_PFOR_porB_like Thi 99.9 1.2E-21 2.6E-26 156.5 11.5 117 51-175 60-199 (235)
86 PRK07064 hypothetical protein; 99.9 5E-22 1.1E-26 175.3 10.3 116 50-175 402-527 (544)
87 PRK06882 acetolactate synthase 99.9 6.2E-22 1.4E-26 175.8 10.6 117 50-175 418-545 (574)
88 PRK07789 acetolactate synthase 99.9 3.1E-22 6.8E-27 179.0 8.7 118 49-175 443-575 (612)
89 PRK08527 acetolactate synthase 99.9 7.2E-22 1.6E-26 175.2 10.6 117 49-175 410-537 (563)
90 PRK08273 thiamine pyrophosphat 99.9 9.1E-22 2E-26 175.6 11.1 118 49-175 411-545 (597)
91 PRK07710 acetolactate synthase 99.9 5.1E-22 1.1E-26 176.4 9.2 117 49-175 420-547 (571)
92 CHL00099 ilvB acetohydroxyacid 99.9 1E-21 2.3E-26 174.9 11.1 117 49-175 426-554 (585)
93 PRK07282 acetolactate synthase 99.9 6.7E-22 1.4E-26 175.5 9.7 116 49-175 414-540 (566)
94 PRK08978 acetolactate synthase 99.9 1.4E-21 3E-26 172.8 11.5 117 49-175 397-524 (548)
95 PRK08617 acetolactate synthase 99.9 1E-21 2.2E-26 173.8 10.2 116 50-175 411-535 (552)
96 TIGR03297 Ppyr-DeCO2ase phosph 99.9 4.1E-21 8.9E-26 161.8 13.4 115 51-175 219-335 (361)
97 TIGR03394 indol_phenyl_DC indo 99.9 1.8E-21 3.9E-26 171.7 11.4 116 50-175 400-520 (535)
98 PRK08266 hypothetical protein; 99.9 1.2E-21 2.6E-26 173.0 10.1 115 51-175 400-524 (542)
99 TIGR03254 oxalate_oxc oxalyl-C 99.9 2.6E-21 5.6E-26 171.3 12.1 115 50-175 414-537 (554)
100 PRK08155 acetolactate synthase 99.9 1.3E-21 2.8E-26 173.6 10.0 116 50-175 416-542 (564)
101 PRK08327 acetolactate synthase 99.9 1.6E-21 3.4E-26 173.2 10.5 121 49-176 426-567 (569)
102 PRK07525 sulfoacetaldehyde ace 99.9 9.9E-22 2.2E-26 175.1 9.0 117 50-175 432-561 (588)
103 PRK09628 oorB 2-oxoglutarate-a 99.9 2.6E-21 5.7E-26 157.6 10.2 115 52-175 67-200 (277)
104 PRK06112 acetolactate synthase 99.9 4.9E-21 1.1E-25 170.3 12.5 116 50-175 434-559 (578)
105 TIGR00239 2oxo_dh_E1 2-oxoglut 99.9 1.1E-20 2.4E-25 173.2 14.7 171 5-175 248-448 (929)
106 KOG1182|consensus 99.8 9E-22 1.9E-26 159.5 6.2 124 51-175 191-317 (432)
107 PRK06276 acetolactate synthase 99.8 4.5E-21 9.8E-26 170.8 11.1 116 50-175 416-542 (586)
108 PRK07092 benzoylformate decarb 99.8 6.6E-21 1.4E-25 167.9 11.8 116 50-175 404-529 (530)
109 PRK08199 thiamine pyrophosphat 99.8 7.2E-21 1.6E-25 168.5 11.8 116 50-175 412-537 (557)
110 PRK09404 sucA 2-oxoglutarate d 99.8 2.6E-20 5.7E-25 171.2 15.3 169 6-175 249-447 (924)
111 COG2609 AceE Pyruvate dehydrog 99.8 8.4E-20 1.8E-24 160.4 17.5 140 9-148 144-295 (887)
112 TIGR00118 acolac_lg acetolacta 99.8 7.4E-21 1.6E-25 168.5 11.0 116 50-175 409-535 (558)
113 PRK09259 putative oxalyl-CoA d 99.8 1.3E-20 2.9E-25 167.3 12.1 116 49-175 420-545 (569)
114 PRK05778 2-oxoglutarate ferred 99.8 1.7E-20 3.6E-25 154.5 10.8 116 52-175 69-202 (301)
115 PRK07449 2-succinyl-5-enolpyru 99.8 9.5E-21 2.1E-25 168.1 9.2 115 50-175 422-548 (568)
116 PRK11869 2-oxoacid ferredoxin 99.8 5E-20 1.1E-24 150.1 10.5 118 51-175 58-192 (280)
117 COG1154 Dxs Deoxyxylulose-5-ph 99.8 2.1E-19 4.6E-24 156.5 14.7 166 4-175 66-278 (627)
118 PRK11866 2-oxoacid ferredoxin 99.8 1.3E-19 2.8E-24 147.7 11.3 117 51-175 57-191 (279)
119 PLN02225 1-deoxy-D-xylulose-5- 99.8 1.7E-19 3.6E-24 161.5 12.7 167 3-175 140-363 (701)
120 TIGR02177 PorB_KorB 2-oxoacid: 99.8 2.1E-19 4.6E-24 146.9 11.5 115 52-175 52-185 (287)
121 PRK11867 2-oxoglutarate ferred 99.8 2.1E-19 4.6E-24 147.2 11.3 115 53-175 69-201 (286)
122 TIGR03336 IOR_alpha indolepyru 99.8 6.3E-19 1.4E-23 157.3 12.3 156 6-174 362-528 (595)
123 KOG1185|consensus 99.7 1E-16 2.3E-21 136.4 12.6 117 50-175 427-559 (571)
124 COG3961 Pyruvate decarboxylase 99.7 3.8E-17 8.3E-22 140.2 9.4 120 48-174 406-533 (557)
125 PLN02980 2-oxoglutarate decarb 99.7 4.9E-17 1.1E-21 158.4 10.1 116 49-175 755-888 (1655)
126 PRK11864 2-ketoisovalerate fer 99.7 9.4E-16 2E-20 125.9 13.8 126 48-175 64-206 (300)
127 COG3962 Acetolactate synthase 99.7 2.8E-16 6E-21 133.5 10.8 118 48-175 439-574 (617)
128 KOG4166|consensus 99.6 2.1E-16 4.6E-21 133.2 5.3 118 48-175 519-646 (675)
129 PRK11865 pyruvate ferredoxin o 99.6 9.4E-14 2E-18 114.2 13.4 162 7-175 25-210 (299)
130 KOG1184|consensus 99.5 1.3E-13 2.9E-18 118.3 9.8 119 47-174 409-537 (561)
131 PF09364 XFP_N: XFP N-terminal 99.5 1.1E-12 2.4E-17 109.0 12.0 125 31-161 116-247 (379)
132 COG3960 Glyoxylate carboligase 99.3 5.9E-12 1.3E-16 104.1 5.0 114 51-173 417-553 (592)
133 COG4231 Indolepyruvate ferredo 99.2 3.8E-11 8.2E-16 105.7 8.8 159 5-176 385-555 (640)
134 COG1013 PorB Pyruvate:ferredox 99.2 4.5E-10 9.7E-15 92.5 11.3 114 52-173 69-201 (294)
135 PRK12270 kgd alpha-ketoglutara 99.1 3.8E-10 8.2E-15 103.6 11.1 123 53-175 619-752 (1228)
136 KOG0451|consensus 99.0 1.8E-09 3.8E-14 94.1 10.5 124 52-175 282-424 (913)
137 COG3957 Phosphoketolase [Carbo 99.0 3.2E-09 7E-14 94.5 10.8 121 26-153 127-252 (793)
138 COG1165 MenD 2-succinyl-6-hydr 98.6 2.3E-07 4.9E-12 81.2 8.9 109 56-175 425-545 (566)
139 cd03377 TPP_PFOR_PNO Thiamine 98.5 5.6E-07 1.2E-11 75.8 9.7 95 77-174 152-265 (365)
140 PRK09193 indolepyruvate ferred 98.4 1.9E-06 4E-11 82.0 9.8 120 51-176 479-618 (1165)
141 PRK13030 2-oxoacid ferredoxin 98.3 4.3E-06 9.4E-11 79.6 10.1 120 51-176 466-604 (1159)
142 COG0567 SucA 2-oxoglutarate de 98.3 5.7E-06 1.2E-10 76.1 10.4 171 5-175 234-430 (906)
143 PRK13029 2-oxoacid ferredoxin 98.1 1.5E-05 3.2E-10 76.0 9.3 119 51-176 493-632 (1186)
144 TIGR02176 pyruv_ox_red pyruvat 97.9 3.9E-05 8.5E-10 73.7 8.9 95 77-174 952-1065(1165)
145 KOG0450|consensus 97.7 0.00013 2.9E-09 65.7 7.2 124 52-175 373-506 (1017)
146 cd07035 TPP_PYR_POX_like Pyrim 97.1 0.011 2.5E-07 43.6 10.4 106 56-174 44-154 (155)
147 PF02776 TPP_enzyme_N: Thiamin 97.0 0.0051 1.1E-07 46.5 7.9 106 56-174 49-160 (172)
148 cd07034 TPP_PYR_PFOR_IOR-alpha 96.9 0.021 4.5E-07 42.4 10.4 105 56-173 51-158 (160)
149 cd06586 TPP_enzyme_PYR Pyrimid 96.9 0.021 4.6E-07 41.8 10.3 104 57-174 46-153 (154)
150 cd07033 TPP_PYR_DXS_TK_like Py 96.8 0.019 4E-07 42.9 9.8 100 58-173 51-154 (156)
151 TIGR03845 sulfopyru_alph sulfo 96.6 0.072 1.6E-06 40.0 11.8 105 56-173 44-152 (157)
152 cd07039 TPP_PYR_POX Pyrimidine 96.4 0.079 1.7E-06 39.9 11.0 103 59-173 51-156 (164)
153 cd07038 TPP_PYR_PDC_IPDC_like 96.3 0.094 2E-06 39.4 10.8 108 56-173 45-160 (162)
154 PRK07524 hypothetical protein; 96.0 0.078 1.7E-06 47.2 10.4 110 56-174 49-162 (535)
155 cd01460 vWA_midasin VWA_Midasi 95.9 0.19 4.1E-06 41.1 11.3 85 78-163 166-257 (266)
156 TIGR03297 Ppyr-DeCO2ase phosph 95.9 0.11 2.4E-06 44.2 10.3 109 55-173 35-150 (361)
157 cd07037 TPP_PYR_MenD Pyrimidin 95.9 0.085 1.8E-06 39.8 8.7 106 58-173 47-160 (162)
158 PRK07064 hypothetical protein; 95.7 0.12 2.6E-06 46.0 10.4 108 58-174 53-164 (544)
159 PRK07979 acetolactate synthase 95.4 0.18 3.8E-06 45.3 10.4 105 57-173 53-161 (574)
160 PRK08266 hypothetical protein; 95.3 0.2 4.3E-06 44.6 10.4 107 58-173 55-165 (542)
161 PRK08659 2-oxoglutarate ferred 95.3 0.27 5.8E-06 42.1 10.7 104 56-172 58-168 (376)
162 PRK07119 2-ketoisovalerate fer 95.1 0.39 8.4E-06 40.8 11.1 103 56-172 58-168 (352)
163 cd07036 TPP_PYR_E1-PDHc-beta_l 95.0 0.39 8.4E-06 36.4 9.8 99 57-171 55-163 (167)
164 TIGR03254 oxalate_oxc oxalyl-C 95.0 0.34 7.5E-06 43.3 10.9 107 58-174 52-162 (554)
165 PRK08611 pyruvate oxidase; Pro 94.9 0.26 5.6E-06 44.3 10.1 104 58-173 55-161 (576)
166 COG0028 IlvB Thiamine pyrophos 94.9 0.32 7E-06 43.7 10.4 104 58-173 51-158 (550)
167 TIGR03710 OAFO_sf 2-oxoacid:ac 94.8 0.26 5.7E-06 44.4 9.8 103 57-172 248-357 (562)
168 PRK06276 acetolactate synthase 94.8 0.34 7.4E-06 43.6 10.5 107 56-174 48-158 (586)
169 PF02779 Transket_pyr: Transke 94.8 0.57 1.2E-05 35.6 10.2 106 58-172 60-169 (178)
170 TIGR00204 dxs 1-deoxy-D-xylulo 94.8 0.42 9.2E-06 43.5 11.0 101 57-172 363-466 (617)
171 PRK06725 acetolactate synthase 94.8 0.29 6.3E-06 44.0 9.9 106 57-174 63-172 (570)
172 PRK07710 acetolactate synthase 94.7 0.25 5.5E-06 44.3 9.5 107 56-174 63-173 (571)
173 PLN02470 acetolactate synthase 94.7 0.24 5.2E-06 44.6 9.3 105 58-174 63-171 (585)
174 smart00861 Transket_pyr Transk 94.7 0.59 1.3E-05 34.9 10.0 100 58-172 61-163 (168)
175 TIGR00232 tktlase_bact transke 94.6 0.46 1E-05 43.6 10.8 100 59-172 409-511 (653)
176 PRK06457 pyruvate dehydrogenas 94.6 0.39 8.5E-06 42.9 10.2 103 59-173 52-157 (549)
177 PRK09259 putative oxalyl-CoA d 94.6 0.45 9.7E-06 42.7 10.6 107 58-174 59-169 (569)
178 PRK07525 sulfoacetaldehyde ace 94.5 0.43 9.4E-06 43.0 10.5 104 59-174 56-162 (588)
179 PRK06456 acetolactate synthase 94.5 0.36 7.8E-06 43.3 9.9 105 58-174 55-163 (572)
180 PRK08322 acetolactate synthase 94.5 0.4 8.8E-06 42.7 10.2 105 58-174 50-158 (547)
181 PRK07418 acetolactate synthase 94.4 0.5 1.1E-05 42.9 10.5 105 57-173 71-179 (616)
182 PRK06466 acetolactate synthase 94.4 0.35 7.5E-06 43.5 9.4 104 58-173 54-161 (574)
183 PRK12571 1-deoxy-D-xylulose-5- 94.3 0.63 1.4E-05 42.6 11.1 106 52-172 366-475 (641)
184 TIGR00118 acolac_lg acetolacta 94.3 0.48 1E-05 42.3 10.3 106 57-174 50-159 (558)
185 PRK05444 1-deoxy-D-xylulose-5- 94.3 0.66 1.4E-05 41.9 11.1 99 59-172 334-435 (580)
186 PRK07789 acetolactate synthase 94.3 0.42 9E-06 43.4 9.9 107 56-174 79-189 (612)
187 PRK08978 acetolactate synthase 94.3 0.35 7.6E-06 43.2 9.3 105 57-173 49-157 (548)
188 PTZ00089 transketolase; Provis 94.3 0.54 1.2E-05 43.2 10.6 102 58-173 415-519 (661)
189 PRK05899 transketolase; Review 94.2 0.66 1.4E-05 42.3 10.9 102 58-172 379-482 (624)
190 PRK07586 hypothetical protein; 94.1 0.46 1E-05 42.0 9.7 106 57-174 50-159 (514)
191 PRK11269 glyoxylate carboligas 94.1 0.43 9.3E-06 43.1 9.6 105 58-174 54-163 (591)
192 PRK06048 acetolactate synthase 94.1 0.46 9.9E-06 42.6 9.6 106 56-173 55-164 (561)
193 PRK08527 acetolactate synthase 94.1 0.49 1.1E-05 42.4 9.8 106 57-174 52-161 (563)
194 PRK09107 acetolactate synthase 94.0 0.53 1.2E-05 42.6 10.0 107 56-174 59-169 (595)
195 TIGR03457 sulphoacet_xsc sulfo 94.0 0.52 1.1E-05 42.4 9.9 104 59-174 52-158 (579)
196 PRK08979 acetolactate synthase 94.0 0.58 1.3E-05 42.1 10.2 105 58-174 54-162 (572)
197 PRK08155 acetolactate synthase 94.0 0.52 1.1E-05 42.2 9.8 104 58-173 63-170 (564)
198 TIGR01504 glyox_carbo_lig glyo 94.0 0.54 1.2E-05 42.5 10.0 105 59-174 54-162 (588)
199 PRK06112 acetolactate synthase 94.0 0.63 1.4E-05 41.8 10.4 105 58-174 61-169 (578)
200 PRK06882 acetolactate synthase 93.9 0.68 1.5E-05 41.5 10.4 105 58-174 54-162 (574)
201 PLN02225 1-deoxy-D-xylulose-5- 93.9 0.83 1.8E-05 42.2 11.0 101 57-172 434-537 (701)
202 PRK07282 acetolactate synthase 93.9 0.43 9.4E-06 42.8 9.1 107 56-174 58-168 (566)
203 PRK06965 acetolactate synthase 93.9 0.73 1.6E-05 41.6 10.6 105 58-174 71-179 (587)
204 PRK08617 acetolactate synthase 93.9 0.53 1.1E-05 42.1 9.6 103 59-173 55-161 (552)
205 PRK12753 transketolase; Review 93.8 0.68 1.5E-05 42.6 10.3 104 58-173 414-518 (663)
206 PF01855 POR_N: Pyruvate flavo 93.8 0.41 8.9E-06 38.2 7.9 101 58-172 48-151 (230)
207 PLN02582 1-deoxy-D-xylulose-5- 93.8 0.88 1.9E-05 42.0 10.9 106 52-172 403-512 (677)
208 PRK12315 1-deoxy-D-xylulose-5- 93.6 0.85 1.8E-05 41.3 10.5 100 58-172 332-433 (581)
209 PLN02683 pyruvate dehydrogenas 93.5 1.4 3.1E-05 37.4 11.2 99 56-171 84-193 (356)
210 CHL00099 ilvB acetohydroxyacid 93.5 0.74 1.6E-05 41.5 9.9 105 57-173 62-170 (585)
211 PRK11892 pyruvate dehydrogenas 93.4 1.1 2.5E-05 39.4 10.6 99 57-171 200-308 (464)
212 PRK08199 thiamine pyrophosphat 93.4 0.94 2E-05 40.5 10.3 105 57-173 57-165 (557)
213 PRK08366 vorA 2-ketoisovalerat 93.4 1.5 3.2E-05 37.8 11.0 102 57-173 60-164 (390)
214 PRK12474 hypothetical protein; 93.4 0.9 2E-05 40.3 10.1 103 59-173 56-162 (518)
215 TIGR02418 acolac_catab acetola 93.3 0.8 1.7E-05 40.8 9.7 104 59-174 49-156 (539)
216 PRK08327 acetolactate synthase 93.2 0.63 1.4E-05 41.8 8.9 108 58-174 62-179 (569)
217 PRK05858 hypothetical protein; 93.2 1.2 2.5E-05 39.8 10.5 106 57-174 53-162 (542)
218 PRK08273 thiamine pyrophosphat 93.2 0.74 1.6E-05 41.6 9.4 104 59-174 55-162 (597)
219 PRK09212 pyruvate dehydrogenas 93.1 1.5 3.4E-05 36.7 10.6 100 56-171 61-170 (327)
220 TIGR03394 indol_phenyl_DC indo 92.8 0.96 2.1E-05 40.4 9.5 106 61-174 53-163 (535)
221 PRK09124 pyruvate dehydrogenas 92.5 1.7 3.8E-05 39.0 10.8 100 59-173 54-159 (574)
222 PLN02234 1-deoxy-D-xylulose-5- 92.5 1.6 3.5E-05 40.0 10.5 99 58-171 411-512 (641)
223 TIGR02720 pyruv_oxi_spxB pyruv 92.4 1.5 3.3E-05 39.4 10.2 103 59-174 51-157 (575)
224 TIGR00173 menD 2-succinyl-5-en 92.4 0.57 1.2E-05 40.6 7.3 105 60-174 52-164 (432)
225 PRK07092 benzoylformate decarb 92.3 1.3 2.8E-05 39.4 9.7 106 58-174 60-169 (530)
226 PLN02790 transketolase 92.1 1.5 3.3E-05 40.2 10.0 102 58-172 404-508 (654)
227 PRK09627 oorA 2-oxoglutarate-a 91.4 2.4 5.2E-05 36.3 9.9 103 57-172 58-167 (375)
228 TIGR03393 indolpyr_decarb indo 91.4 2.1 4.6E-05 38.2 9.9 107 59-174 52-164 (539)
229 PRK08367 porA pyruvate ferredo 91.2 2.5 5.4E-05 36.5 9.8 102 56-172 60-166 (394)
230 COG3958 Transketolase, C-termi 91.1 2.4 5.2E-05 35.1 9.0 109 51-172 53-164 (312)
231 PRK09622 porA pyruvate flavodo 90.5 4.5 9.8E-05 35.0 10.9 101 57-172 67-172 (407)
232 PF13519 VWA_2: von Willebrand 90.5 1.5 3.3E-05 31.8 7.0 73 76-160 99-171 (172)
233 PRK06154 hypothetical protein; 90.4 2.6 5.7E-05 37.9 9.7 101 60-174 68-174 (565)
234 PRK12754 transketolase; Review 90.3 2.9 6.4E-05 38.5 10.0 103 59-173 415-518 (663)
235 PTZ00182 3-methyl-2-oxobutanat 90.2 5.3 0.00012 34.0 10.9 99 56-171 92-201 (355)
236 PF04273 DUF442: Putative phos 89.8 3.9 8.4E-05 28.8 8.3 76 93-174 16-94 (110)
237 CHL00144 odpB pyruvate dehydro 89.0 6.5 0.00014 33.0 10.4 36 133-171 134-170 (327)
238 TIGR03336 IOR_alpha indolepyru 88.5 5.3 0.00011 36.2 10.2 99 58-173 58-161 (595)
239 PLN02573 pyruvate decarboxylas 88.4 5.9 0.00013 35.8 10.4 104 59-174 67-180 (578)
240 cd01453 vWA_transcription_fact 87.2 8.7 0.00019 29.2 9.4 72 76-162 107-179 (183)
241 KOG4166|consensus 86.8 1.9 4.2E-05 37.7 5.9 100 61-173 144-248 (675)
242 COG0021 TktA Transketolase [Ca 85.6 8.9 0.00019 35.1 9.7 78 92-173 440-518 (663)
243 PRK06546 pyruvate dehydrogenas 85.4 9.6 0.00021 34.4 10.0 102 59-174 54-160 (578)
244 PLN02980 2-oxoglutarate decarb 84.3 4.2 9.1E-05 41.4 7.9 105 60-174 353-465 (1655)
245 PRK13685 hypothetical protein; 83.2 25 0.00055 29.2 11.6 83 77-161 194-286 (326)
246 cd01455 vWA_F11C1-5a_type Von 82.2 22 0.00047 27.7 11.0 98 52-163 86-187 (191)
247 COG1154 Dxs Deoxyxylulose-5-ph 79.9 25 0.00055 32.1 10.3 104 56-172 368-472 (627)
248 PRK07449 2-succinyl-5-enolpyru 79.4 7.7 0.00017 34.8 7.1 45 59-110 60-104 (568)
249 COG1303 Uncharacterized protei 79.3 6.9 0.00015 29.6 5.6 47 129-175 20-66 (179)
250 cd01467 vWA_BatA_type VWA BatA 79.2 23 0.0005 26.1 9.1 71 76-147 102-175 (180)
251 PRK13683 hypothetical protein; 79.2 2.9 6.2E-05 28.2 3.2 27 148-175 22-48 (87)
252 COG4032 Predicted thiamine-pyr 79.0 9.8 0.00021 28.4 6.2 141 10-171 8-159 (172)
253 COG1107 Archaea-specific RecJ- 76.9 5.9 0.00013 36.0 5.4 52 94-155 405-458 (715)
254 COG0674 PorA Pyruvate:ferredox 76.1 41 0.0009 28.7 10.2 103 56-172 57-162 (365)
255 TIGR00239 2oxo_dh_E1 2-oxoglut 74.4 50 0.0011 31.9 11.1 106 57-171 658-770 (929)
256 PF02421 FeoB_N: Ferrous iron 72.5 7.3 0.00016 29.2 4.3 73 78-157 80-155 (156)
257 cd01451 vWA_Magnesium_chelatas 71.5 39 0.00086 25.1 9.6 73 77-159 99-177 (178)
258 PRK13406 bchD magnesium chelat 71.3 54 0.0012 29.9 10.3 95 56-162 473-583 (584)
259 COG0075 Serine-pyruvate aminot 71.1 19 0.00042 31.0 7.0 68 76-159 55-127 (383)
260 PF07279 DUF1442: Protein of u 68.7 49 0.0011 26.3 8.3 93 56-171 52-146 (218)
261 smart00115 CASc Caspase, inter 68.6 21 0.00044 28.5 6.4 57 107-163 9-66 (241)
262 PF06707 DUF1194: Protein of u 68.3 57 0.0012 25.7 9.8 78 75-163 115-199 (205)
263 PF14399 Transpep_BrtH: NlpC/p 67.2 18 0.00039 29.5 6.0 45 130-175 53-97 (317)
264 COG0299 PurN Folate-dependent 65.6 47 0.001 26.0 7.5 69 77-164 2-77 (200)
265 cd00032 CASc Caspase, interleu 63.5 24 0.00053 28.0 5.9 57 107-163 10-68 (243)
266 PF02423 OCD_Mu_crystall: Orni 61.5 43 0.00092 27.8 7.2 69 65-147 116-184 (313)
267 COG3453 Uncharacterized protei 61.3 54 0.0012 23.8 6.6 73 96-174 20-95 (130)
268 KOG1201|consensus 59.3 1.1E+02 0.0023 25.7 10.6 80 76-171 37-117 (300)
269 PRK09404 sucA 2-oxoglutarate d 59.2 1.4E+02 0.0031 28.9 10.9 102 58-171 657-768 (924)
270 PRK06852 aldolase; Validated 54.2 44 0.00095 27.9 6.0 69 98-172 161-236 (304)
271 TIGR02176 pyruv_ox_red pyruvat 53.9 1.7E+02 0.0036 29.2 10.7 100 58-171 63-165 (1165)
272 PRK10490 sensor protein KdpD; 53.8 65 0.0014 30.9 7.8 76 76-153 251-326 (895)
273 COG1736 DPH2 Diphthamide synth 53.2 72 0.0016 27.2 7.2 87 76-168 178-269 (347)
274 cd02991 UAS_ETEA UAS family, E 52.8 78 0.0017 22.2 6.8 81 89-172 2-82 (116)
275 TIGR02371 ala_DH_arch alanine 52.0 92 0.002 26.0 7.7 45 65-113 116-160 (325)
276 TIGR00173 menD 2-succinyl-5-en 51.8 6.9 0.00015 33.9 0.9 20 48-67 412-431 (432)
277 COG2894 MinD Septum formation 50.8 1.3E+02 0.0029 24.3 8.7 32 137-170 110-141 (272)
278 PRK13010 purU formyltetrahydro 49.8 1.5E+02 0.0032 24.5 8.5 55 74-147 92-148 (289)
279 TIGR00515 accD acetyl-CoA carb 49.7 75 0.0016 26.3 6.7 43 76-119 119-169 (285)
280 cd06375 PBP1_mGluR_groupII Lig 49.5 1.6E+02 0.0034 25.7 9.1 85 77-163 104-199 (458)
281 PF02739 5_3_exonuc_N: 5'-3' e 49.1 71 0.0015 24.0 6.0 42 130-171 89-130 (169)
282 COG2205 KdpD Osmosensitive K+ 48.1 1.1E+02 0.0023 29.4 8.0 75 76-152 249-323 (890)
283 PRK09250 fructose-bisphosphate 47.7 1.2E+02 0.0027 25.8 7.8 59 98-157 186-248 (348)
284 PF10087 DUF2325: Uncharacteri 47.6 72 0.0016 21.4 5.4 32 130-161 65-96 (97)
285 COG1240 ChlD Mg-chelatase subu 47.0 1.6E+02 0.0035 24.1 10.4 98 55-160 150-258 (261)
286 cd06361 PBP1_GPC6A_like Ligand 47.0 1.8E+02 0.004 24.8 9.5 87 77-165 102-199 (403)
287 KOG1184|consensus 46.7 59 0.0013 29.3 5.8 105 62-175 58-169 (561)
288 PF11965 DUF3479: Domain of un 46.5 1.3E+02 0.0028 22.8 7.2 85 78-171 2-90 (164)
289 TIGR03436 acidobact_VWFA VWFA- 46.1 1.6E+02 0.0034 23.8 10.2 82 75-161 163-250 (296)
290 PF05209 MinC_N: Septum format 46.0 62 0.0013 21.9 4.9 37 138-174 12-53 (99)
291 cd01461 vWA_interalpha_trypsin 45.8 1.1E+02 0.0024 21.9 10.0 70 76-158 99-169 (171)
292 cd02958 UAS UAS family; UAS is 45.7 95 0.0021 21.1 6.7 26 91-116 4-29 (114)
293 PRK07589 ornithine cyclodeamin 44.6 1.6E+02 0.0035 24.9 8.1 26 65-90 117-142 (346)
294 PLN02522 ATP citrate (pro-S)-l 44.4 1.5E+02 0.0032 27.4 8.2 84 74-164 220-316 (608)
295 PRK09482 flap endonuclease-lik 44.3 1.7E+02 0.0037 23.7 8.0 42 130-171 87-128 (256)
296 KOG3432|consensus 43.3 1.2E+02 0.0026 21.6 6.0 82 76-173 6-93 (121)
297 TIGR00655 PurU formyltetrahydr 42.4 1.4E+02 0.0031 24.4 7.3 69 75-162 84-156 (280)
298 CHL00174 accD acetyl-CoA carbo 42.3 57 0.0012 27.2 4.9 43 76-119 132-182 (296)
299 cd01465 vWA_subgroup VWA subgr 41.5 1.3E+02 0.0028 21.6 9.5 67 78-157 98-169 (170)
300 PRK06027 purU formyltetrahydro 41.3 2E+02 0.0043 23.6 8.7 54 75-147 89-144 (286)
301 cd06376 PBP1_mGluR_groupIII Li 40.5 2.1E+02 0.0045 24.8 8.4 32 77-110 102-133 (463)
302 PF03437 BtpA: BtpA family; I 39.5 1.4E+02 0.0031 24.2 6.7 90 76-172 110-206 (254)
303 PLN02808 alpha-galactosidase 39.4 79 0.0017 27.4 5.5 43 133-175 139-186 (386)
304 PRK05654 acetyl-CoA carboxylas 39.2 63 0.0014 26.8 4.7 14 150-163 265-278 (292)
305 cd06365 PBP1_Pheromone_recepto 39.2 2.6E+02 0.0057 24.3 9.5 85 77-163 102-197 (469)
306 PLN02460 indole-3-glycerol-pho 39.2 1E+02 0.0022 26.3 5.9 80 76-160 152-249 (338)
307 COG1830 FbaB DhnA-type fructos 39.1 99 0.0021 25.4 5.7 66 98-171 137-207 (265)
308 PF06506 PrpR_N: Propionate ca 39.0 58 0.0013 24.4 4.2 32 131-163 134-165 (176)
309 KOG1185|consensus 38.9 1.8E+02 0.0038 26.3 7.5 43 65-110 66-108 (571)
310 TIGR01117 mmdA methylmalonyl-C 38.1 65 0.0014 28.9 4.9 43 76-119 81-131 (512)
311 PLN02229 alpha-galactosidase 38.0 76 0.0017 27.9 5.2 42 133-174 169-215 (427)
312 PRK08227 autoinducer 2 aldolas 37.8 1.2E+02 0.0026 24.8 6.0 65 98-172 134-198 (264)
313 PRK14976 5'-3' exonuclease; Pr 37.5 2.3E+02 0.005 23.2 8.1 34 130-163 93-126 (281)
314 cd06447 D-Ser-dehyd D-Serine d 37.4 2.5E+02 0.0055 24.3 8.3 57 79-154 136-193 (404)
315 PF06057 VirJ: Bacterial virul 37.1 42 0.0009 26.2 3.1 46 76-124 2-47 (192)
316 PRK06823 ornithine cyclodeamin 36.8 2.2E+02 0.0048 23.7 7.7 69 65-147 116-184 (315)
317 PRK13012 2-oxoacid dehydrogena 36.4 4.1E+02 0.0089 25.8 11.2 106 61-173 590-701 (896)
318 PLN02331 phosphoribosylglycina 36.3 2E+02 0.0044 22.4 7.0 13 134-146 43-55 (207)
319 cd06269 PBP1_glutamate_recepto 35.9 2E+02 0.0044 22.1 9.2 85 77-163 70-165 (298)
320 COG2873 MET17 O-acetylhomoseri 35.8 43 0.00093 29.0 3.2 29 132-160 118-146 (426)
321 PLN02692 alpha-galactosidase 35.7 82 0.0018 27.5 5.0 42 133-174 163-209 (412)
322 COG1797 CobB Cobyrinic acid a, 35.6 2E+02 0.0044 25.4 7.3 22 96-118 103-124 (451)
323 COG3962 Acetolactate synthase 35.1 3.4E+02 0.0073 24.6 8.6 29 79-110 87-115 (617)
324 PRK05647 purN phosphoribosylgl 35.0 2.1E+02 0.0046 22.1 8.5 55 77-147 3-58 (200)
325 PF03162 Y_phosphatase2: Tyros 34.1 1.2E+02 0.0025 22.8 5.1 44 130-173 46-98 (164)
326 cd06371 PBP1_sensory_GC_DEF_li 33.0 3E+02 0.0064 23.1 9.8 84 77-163 65-157 (382)
327 cd00640 Trp-synth-beta_II Tryp 32.9 2.4E+02 0.0051 22.0 9.9 58 99-170 68-125 (244)
328 COG2179 Predicted hydrolase of 32.9 1.3E+02 0.0028 23.0 5.1 27 107-145 63-89 (175)
329 TIGR02442 Cob-chelat-sub cobal 32.2 2.5E+02 0.0054 25.8 7.9 61 76-146 564-632 (633)
330 COG2515 Acd 1-aminocyclopropan 32.2 3.1E+02 0.0067 23.2 7.6 84 79-173 66-153 (323)
331 PRK07328 histidinol-phosphatas 31.9 1.7E+02 0.0037 23.4 6.1 65 94-163 180-245 (269)
332 PLN03231 putative alpha-galact 31.5 1.2E+02 0.0026 26.0 5.3 42 132-173 168-214 (357)
333 cd01134 V_A-ATPase_A V/A-type 31.0 2.7E+02 0.0058 24.0 7.3 85 75-161 183-273 (369)
334 COG1058 CinA Predicted nucleot 30.9 1.1E+02 0.0023 25.0 4.7 35 130-164 24-60 (255)
335 TIGR01244 conserved hypothetic 30.9 2E+02 0.0043 20.5 9.0 71 97-173 20-93 (135)
336 PLN03013 cysteine synthase 30.5 3.5E+02 0.0076 23.8 8.1 54 78-149 176-230 (429)
337 cd06374 PBP1_mGluR_groupI Liga 30.4 3.6E+02 0.0079 23.4 8.5 32 77-110 116-147 (472)
338 TIGR00177 molyb_syn molybdenum 30.2 1.4E+02 0.003 21.6 4.9 34 130-163 30-65 (144)
339 PLN02820 3-methylcrotonyl-CoA 30.1 2E+02 0.0042 26.3 6.7 44 76-120 128-179 (569)
340 PF00931 NB-ARC: NB-ARC domain 29.9 2.8E+02 0.006 21.8 7.9 84 75-171 17-105 (287)
341 cd02874 GH18_CFLE_spore_hydrol 29.8 1.4E+02 0.003 24.5 5.3 66 82-147 36-110 (313)
342 PHA02567 rnh RnaseH; Provision 29.4 1.6E+02 0.0034 24.7 5.5 40 132-171 112-151 (304)
343 smart00594 UAS UAS domain. 29.3 2E+02 0.0043 20.0 6.4 82 88-172 11-92 (122)
344 TIGR00670 asp_carb_tr aspartat 29.2 3.3E+02 0.0072 22.5 7.7 60 45-106 118-178 (301)
345 TIGR01856 hisJ_fam histidinol 29.2 1.7E+02 0.0036 23.3 5.6 63 95-162 189-252 (253)
346 PF01380 SIS: SIS domain SIS d 29.2 1.9E+02 0.0041 19.7 6.0 29 76-106 54-82 (131)
347 PF15024 Glyco_transf_18: Glyc 29.2 68 0.0015 29.1 3.5 34 136-169 400-435 (559)
348 COG0134 TrpC Indole-3-glycerol 28.7 98 0.0021 25.2 4.1 79 76-159 79-174 (254)
349 PRK04192 V-type ATP synthase s 28.6 2.9E+02 0.0064 25.4 7.5 86 74-161 252-343 (586)
350 cd00758 MoCF_BD MoCF_BD: molyb 28.6 1.6E+02 0.0034 20.9 4.9 35 130-164 22-58 (133)
351 cd00886 MogA_MoaB MogA_MoaB fa 28.5 2.1E+02 0.0046 20.8 5.7 34 130-163 23-58 (152)
352 TIGR01043 ATP_syn_A_arch ATP s 28.3 3.2E+02 0.0069 25.1 7.6 86 74-161 247-338 (578)
353 KOG0025|consensus 27.9 1.3E+02 0.0029 25.3 4.8 30 131-160 176-207 (354)
354 cd06362 PBP1_mGluR Ligand bind 27.8 3.9E+02 0.0084 22.8 8.2 31 77-109 102-132 (452)
355 cd06363 PBP1_Taste_receptor Li 27.6 3.8E+02 0.0082 22.6 8.2 31 77-109 106-136 (410)
356 KOG3107|consensus 27.3 1E+02 0.0022 26.9 4.1 23 77-106 424-446 (468)
357 PRK09372 ribonuclease activity 27.0 1.4E+02 0.003 22.4 4.4 25 131-155 77-103 (159)
358 COG0498 ThrC Threonine synthas 26.9 4.1E+02 0.0089 23.2 7.9 54 97-163 142-195 (411)
359 PF07478 Dala_Dala_lig_C: D-al 26.9 87 0.0019 24.2 3.5 31 138-173 46-76 (203)
360 PF08042 PqqA: PqqA family; I 26.9 44 0.00095 16.2 1.1 11 166-176 4-14 (20)
361 PF00009 GTP_EFTU: Elongation 26.8 1.6E+02 0.0035 21.9 4.9 81 75-161 94-185 (188)
362 TIGR01935 NOT-MenG RraA famliy 26.7 1.4E+02 0.0029 22.2 4.3 23 132-154 74-98 (150)
363 PF00994 MoCF_biosynth: Probab 26.6 1.4E+02 0.0029 21.4 4.3 35 130-164 20-56 (144)
364 COG2145 ThiM Hydroxyethylthiaz 26.3 73 0.0016 26.1 3.0 42 130-172 50-91 (265)
365 PLN02735 carbamoyl-phosphate s 26.2 4.4E+02 0.0096 26.2 8.7 69 76-146 573-655 (1102)
366 TIGR01204 bioW 6-carboxyhexano 26.2 2E+02 0.0044 23.1 5.4 75 92-172 150-232 (232)
367 PRK01322 6-carboxyhexanoate--C 26.1 2.1E+02 0.0046 23.1 5.5 76 92-173 157-240 (242)
368 PRK06988 putative formyltransf 26.1 3.3E+02 0.0071 22.6 7.0 71 79-159 4-74 (312)
369 PRK06278 cobyrinic acid a,c-di 26.1 3.3E+02 0.0071 24.3 7.2 90 77-170 318-414 (476)
370 PF01990 ATP-synt_F: ATP synth 26.0 2.1E+02 0.0044 19.1 5.5 32 131-163 8-39 (95)
371 PF14403 CP_ATPgrasp_2: Circul 26.0 1.1E+02 0.0025 26.9 4.3 37 137-176 347-384 (445)
372 PRK09554 feoB ferrous iron tra 25.9 5.8E+02 0.013 24.3 9.2 77 79-162 88-167 (772)
373 cd04175 Rap1 Rap1 subgroup. T 25.4 2.5E+02 0.0054 19.8 6.9 31 131-161 128-161 (164)
374 COG0370 FeoB Fe2+ transport sy 25.3 3.6E+02 0.0078 25.2 7.4 87 68-161 73-162 (653)
375 KOG0369|consensus 25.0 1.1E+02 0.0024 28.9 4.1 21 85-107 167-187 (1176)
376 TIGR01042 V-ATPase_V1_A V-type 24.8 3.4E+02 0.0074 25.0 7.2 86 74-161 251-344 (591)
377 TIGR01769 GGGP geranylgeranylg 24.7 2.5E+02 0.0054 22.0 5.6 43 131-173 15-60 (205)
378 PLN02569 threonine synthase 24.6 4.6E+02 0.01 23.4 7.9 50 99-161 205-254 (484)
379 TIGR02667 moaB_proteo molybden 24.4 2.9E+02 0.0062 20.5 5.8 34 130-163 25-60 (163)
380 PRK12487 ribonuclease activity 24.1 2.5E+02 0.0053 21.2 5.3 24 132-155 78-103 (163)
381 cd06393 PBP1_iGluR_Kainate_Glu 24.1 3.5E+02 0.0075 22.6 6.9 31 77-109 71-101 (384)
382 PRK11498 bcsA cellulose syntha 24.0 4.3E+02 0.0093 25.5 8.0 51 108-171 294-344 (852)
383 PRK07189 malonate decarboxylas 24.0 1.6E+02 0.0036 24.5 4.7 43 76-119 67-122 (301)
384 TIGR00075 hypD hydrogenase exp 23.8 4.8E+02 0.01 22.5 10.9 87 75-163 135-240 (369)
385 PLN02618 tryptophan synthase, 23.8 4.9E+02 0.011 22.7 8.4 69 61-146 106-175 (410)
386 cd05710 SIS_1 A subgroup of th 23.6 2.4E+02 0.0052 19.5 5.0 36 76-114 48-83 (120)
387 TIGR02998 RraA_entero regulato 23.6 2.5E+02 0.0055 21.1 5.3 17 132-148 78-94 (161)
388 COG0078 ArgF Ornithine carbamo 23.5 4.2E+02 0.0091 22.3 7.0 29 76-107 152-180 (310)
389 PRK06110 hypothetical protein; 23.3 4.3E+02 0.0092 21.8 8.3 46 95-154 83-129 (322)
390 TIGR01520 FruBisAldo_II_A fruc 23.2 1.7E+02 0.0038 25.0 4.8 34 137-173 25-58 (357)
391 COG3172 NadR Predicted ATPase/ 23.1 2.9E+02 0.0063 21.3 5.5 65 97-162 107-178 (187)
392 COG0777 AccD Acetyl-CoA carbox 23.0 1.7E+02 0.0037 24.2 4.5 56 75-137 120-183 (294)
393 PRK15062 hydrogenase isoenzyme 22.9 5E+02 0.011 22.4 11.0 70 93-163 147-234 (364)
394 PF05941 Chordopox_A20R: Chord 22.6 2.1E+02 0.0046 24.3 5.1 61 103-163 121-188 (334)
395 PF13714 PEP_mutase: Phosphoen 22.5 4E+02 0.0087 21.2 7.5 43 133-175 91-144 (238)
396 PF05368 NmrA: NmrA-like famil 22.5 3.3E+02 0.0071 20.7 6.1 11 76-86 22-32 (233)
397 PF10750 DUF2536: Protein of u 22.3 2.3E+02 0.0049 18.2 4.4 25 149-174 18-42 (68)
398 PHA02031 putative DnaG-like pr 22.3 1E+02 0.0022 25.3 3.1 74 77-162 183-260 (266)
399 COG0157 NadC Nicotinate-nucleo 22.2 4.6E+02 0.0099 21.7 7.4 36 136-173 204-239 (280)
400 cd05014 SIS_Kpsf KpsF-like pro 22.1 2.6E+02 0.0056 19.1 4.9 37 76-115 48-84 (128)
401 cd01456 vWA_ywmD_type VWA ywmD 22.0 3.5E+02 0.0076 20.4 7.2 33 58-91 116-149 (206)
402 PRK13896 cobyrinic acid a,c-di 22.0 2.8E+02 0.006 24.4 5.9 40 77-117 78-117 (433)
403 TIGR02717 AcCoA-syn-alpha acet 22.0 5.4E+02 0.012 22.5 8.1 82 74-163 201-288 (447)
404 cd06386 PBP1_NPR_C_like Ligand 22.0 3.1E+02 0.0068 23.0 6.2 31 78-110 67-97 (387)
405 TIGR03186 AKGDH_not_PDH alpha- 22.0 7.5E+02 0.016 24.1 11.3 120 46-173 559-688 (889)
406 COG2098 Uncharacterized protei 21.8 1.1E+02 0.0025 21.6 2.8 30 144-175 32-61 (116)
407 PF09670 Cas_Cas02710: CRISPR- 21.7 4.8E+02 0.01 22.3 7.3 31 143-173 43-77 (379)
408 smart00475 53EXOc 5'-3' exonuc 21.7 4.4E+02 0.0094 21.3 8.2 33 130-162 87-119 (259)
409 PRK10669 putative cation:proto 21.6 3.8E+02 0.0083 24.0 7.0 33 78-116 418-450 (558)
410 PRK13598 hisB imidazoleglycero 21.5 4E+02 0.0086 20.8 6.1 23 76-101 85-107 (193)
411 cd00885 cinA Competence-damage 21.4 2.4E+02 0.0051 21.2 4.8 34 130-163 22-57 (170)
412 PRK08245 hypothetical protein; 21.3 2.8E+02 0.006 22.1 5.5 44 108-156 89-134 (240)
413 PF00656 Peptidase_C14: Caspas 21.3 3.2E+02 0.0069 20.9 5.8 57 108-164 2-61 (248)
414 COG1171 IlvA Threonine dehydra 21.2 5.3E+02 0.011 22.1 8.0 66 92-172 84-150 (347)
415 PLN02820 3-methylcrotonyl-CoA 21.2 1.8E+02 0.0038 26.6 4.7 25 95-120 392-416 (569)
416 cd05008 SIS_GlmS_GlmD_1 SIS (S 21.2 2.8E+02 0.006 18.9 4.9 36 76-114 47-82 (126)
417 COG0547 TrpD Anthranilate phos 21.0 2.9E+02 0.0062 23.5 5.7 68 78-160 79-146 (338)
418 PRK11889 flhF flagellar biosyn 21.0 5.9E+02 0.013 22.5 9.4 72 77-161 241-315 (436)
419 PF08353 DUF1727: Domain of un 20.7 3.1E+02 0.0067 19.2 5.0 24 93-116 8-32 (113)
420 PLN02590 probable tyrosine dec 20.7 6.4E+02 0.014 22.8 9.2 44 131-174 241-294 (539)
421 TIGR01019 sucCoAalpha succinyl 20.6 4.9E+02 0.011 21.4 8.5 83 74-162 196-286 (286)
422 PF10566 Glyco_hydro_97: Glyco 20.5 2.3E+02 0.0049 23.3 4.8 53 92-147 74-126 (273)
423 TIGR01117 mmdA methylmalonyl-C 20.2 2.7E+02 0.0058 25.0 5.6 41 76-117 314-362 (512)
424 KOG0523|consensus 20.1 2.4E+02 0.0053 26.0 5.2 101 59-172 375-477 (632)
425 COG3195 Uncharacterized protei 20.0 1.8E+02 0.0039 22.2 3.8 28 136-163 117-145 (176)
No 1
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-38 Score=244.42 Aligned_cols=165 Identities=40% Similarity=0.585 Sum_probs=154.2
Q ss_pred ChHHHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCC-CCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCc
Q psy786 9 RTNRSKAWAEAGLFPVSELKNLRKIDSDLEGHPTP-RLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGE 87 (176)
Q Consensus 9 ~~~~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~-~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~ 87 (176)
.+.|||+|+.+|++|+|+|+.|++.++.|++||.. .+|+++.++|++|+++++|+|+|++.|. ++.+.+|++++|||+
T Consensus 74 a~AlYa~Lae~G~~p~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl-~~~~~~VyvilGDGE 152 (243)
T COG3959 74 APALYATLAEKGYFPEEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKL-KGSPYRVYVILGDGE 152 (243)
T ss_pred hHHHHHHHHHcCCCCHHHHHHhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhh-cCCCceEEEEecCcc
Confidence 46799999999999999999999999999999998 4889999999999999999999999996 566789999999999
Q ss_pred cCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCC
Q psy786 88 SAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIG 167 (176)
Q Consensus 88 ~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~ 167 (176)
+++|..|||+.+|++++|.+|+.|+|-|+.++++.+++..+..++.+..++|||++++|||+|.+++.+|++++....++
T Consensus 153 l~EG~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~r 232 (243)
T COG3959 153 LDEGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGR 232 (243)
T ss_pred cccccHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhccCCC
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999998532449
Q ss_pred cEEEEee
Q psy786 168 CVWIQRG 174 (176)
Q Consensus 168 P~lI~~~ 174 (176)
|.+|-+.
T Consensus 233 P~~IIa~ 239 (243)
T COG3959 233 PTVIIAK 239 (243)
T ss_pred CeEEEEe
Confidence 9998764
No 2
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=100.00 E-value=1.6e-36 Score=244.86 Aligned_cols=165 Identities=44% Similarity=0.606 Sum_probs=151.3
Q ss_pred hHHHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCCC-CccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCcc
Q psy786 10 TNRSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRL-NFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGES 88 (176)
Q Consensus 10 ~~~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~~-~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~ 88 (176)
+.+|++|+..|+++.++|.+||+.++.+++|+++.. |+++.++|+||+++|.|+|+|++.++ ..++++|+|++|||++
T Consensus 61 ~~~ya~l~~~g~~~~~~l~~~~~~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~-~~~~~~v~~i~GDG~~ 139 (255)
T cd02012 61 PALYAVLALAGYLPEEDLKTFRQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKL-LGFDYRVYVLLGDGEL 139 (255)
T ss_pred HHHHHHHHHcCCCCHHHHHHhcccCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHH-hCCCCEEEEEECcccc
Confidence 469999999999999999999999999999999864 58999999999999999999999986 4567899999999999
Q ss_pred CCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCc
Q psy786 89 AEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGC 168 (176)
Q Consensus 89 ~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P 168 (176)
++|.+||++++|++++||++++|+|||+|++++.+......+++++++++|||++++|||+|++++.+++++|.+..++|
T Consensus 140 ~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~~~~P 219 (255)
T cd02012 140 QEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKSKGKP 219 (255)
T ss_pred cccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999998877666667899999999999999999999999999999997434899
Q ss_pred EEEEeee
Q psy786 169 VWIQRGC 175 (176)
Q Consensus 169 ~lI~~~~ 175 (176)
++|++++
T Consensus 220 ~~I~~~t 226 (255)
T cd02012 220 TLIIAKT 226 (255)
T ss_pred EEEEEEe
Confidence 9999875
No 3
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=100.00 E-value=2e-35 Score=245.79 Aligned_cols=165 Identities=39% Similarity=0.571 Sum_probs=141.9
Q ss_pred hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCC-CCCccccCCcccchhHHHHHHHHHhchhcC---------CCcce
Q psy786 10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTP-RLNFIDVGTGSLGQGLSVAAGMAYVGKYFD---------KASYR 78 (176)
Q Consensus 10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~-~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~---------~~~~~ 78 (176)
+.+|++|+..|+ ++.|+|.+||+.++.+++||+. .+|+++.++|++|+|++.|+|+|+|.|+++ .-+.+
T Consensus 66 ~~lYa~l~~~G~~~~~~~L~~fr~~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~ 145 (332)
T PF00456_consen 66 PALYAILALRGYDLSEEDLKTFRQLGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHR 145 (332)
T ss_dssp HHHHHHHHHTTSSS-HHHHTTTTSTTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--
T ss_pred HHHHHHHHHhcCCCCHHHHHHhccCCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccce
Confidence 569999999999 9999999999999999999995 589999999999999999999999987532 23568
Q ss_pred EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEe-cCCCHHHHHHH
Q psy786 79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVV-DGHDVEHLVKV 157 (176)
Q Consensus 79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v-dG~d~~~l~~a 157 (176)
|+|++|||++++|..|||+.+|++++|++|++|+|+|+.++++.+.... ..++.+.+++|||++++| ||+|.++|.+|
T Consensus 146 vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q~dg~~~~~~-~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A 224 (332)
T PF00456_consen 146 VYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGIQIDGPTDIVF-SEDIAKKFEAFGWNVIEVCDGHDVEAIYAA 224 (332)
T ss_dssp EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESEETTEEGGGTH-HSHHHHHHHHTT-EEEEEEETTBHHHHHHH
T ss_pred EEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCcccCCCccccc-chHHHHHHHHhhhhhcccccCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887654 367899999999999998 99999999999
Q ss_pred HHHHHhhCCCcEEEEeee
Q psy786 158 SSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 158 l~~a~~~~~~P~lI~~~~ 175 (176)
+++|....++|++|.++.
T Consensus 225 ~~~a~~~~~kP~~Ii~~T 242 (332)
T PF00456_consen 225 IEEAKASKGKPTVIIART 242 (332)
T ss_dssp HHHHHHSTSS-EEEEEEE
T ss_pred HHHHHhcCCCCceeecce
Confidence 999965458999998874
No 4
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=6.5e-35 Score=260.91 Aligned_cols=165 Identities=27% Similarity=0.371 Sum_probs=152.4
Q ss_pred hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCC---------Ccce
Q psy786 10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDK---------ASYR 78 (176)
Q Consensus 10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~---------~~~~ 78 (176)
+.||++|+..|+ ++.|+|.+||++++.++|||++. +|+++.++|++|++++.|+|+|+|.|+++. .+.+
T Consensus 69 ~~lYa~l~~~G~~~~~e~L~~fr~~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~ 148 (663)
T PRK12754 69 MLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHY 148 (663)
T ss_pred HHHHHHHHHcCCCCCHHHHHHhccCCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCE
Confidence 569999999998 99999999999999999999985 899999999999999999999999987531 3678
Q ss_pred EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEE-ecCCCHHHHHHH
Q psy786 79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVV-VDGHDVEHLVKV 157 (176)
Q Consensus 79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~-vdG~d~~~l~~a 157 (176)
|+|++|||++++|.+||++++|+.++||+|++|+|||++++++++.... ..++.+++++|||++++ |||+|++++.+|
T Consensus 149 v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A 227 (663)
T PRK12754 149 TYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRA 227 (663)
T ss_pred EEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCCccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999988776 57899999999999999 899999999999
Q ss_pred HHHHHhhCCCcEEEEeee
Q psy786 158 SSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 158 l~~a~~~~~~P~lI~~~~ 175 (176)
+++|.+..++|++|++++
T Consensus 228 ~~~a~~~~~~Pt~I~~~T 245 (663)
T PRK12754 228 VEEARAVTDKPSLLMCKT 245 (663)
T ss_pred HHHHHhcCCCCEEEEEEe
Confidence 999865468999999875
No 5
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=4.9e-34 Score=255.88 Aligned_cols=166 Identities=29% Similarity=0.391 Sum_probs=151.4
Q ss_pred ChHHHHHHHHcCCC-CHHHHhhhhhcCCCCCCCCCC-CCCccccCCcccchhHHHHHHHHHhchhcCC---------Ccc
Q psy786 9 RTNRSKAWAEAGLF-PVSELKNLRKIDSDLEGHPTP-RLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK---------ASY 77 (176)
Q Consensus 9 ~~~~ya~l~~~G~~-~~e~l~~~r~~~~~l~~~~~~-~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~---------~~~ 77 (176)
.+.||++|+..|++ +.|+|.+||+.++.+++||++ .+|+++.++|++|++++.|+|+|++.|+++. .+.
T Consensus 64 ~~~lYa~l~~~G~~~~~e~L~~fr~~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~ 143 (653)
T TIGR00232 64 SMLLYSLLHLTGYDLSIEDLKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDH 143 (653)
T ss_pred HHHHHHHHHHcCCCCCHHHHHhcccCCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCC
Confidence 35699999999996 999999999999999999998 4899999999999999999999999987521 367
Q ss_pred eEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEe-cCCCHHHHHH
Q psy786 78 RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVV-DGHDVEHLVK 156 (176)
Q Consensus 78 ~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v-dG~d~~~l~~ 156 (176)
+|+|++|||++++|.+||++++|+.++||+|++|+|||+|++++++.... ..++.+++++|||++++| ||+|++++.+
T Consensus 144 ~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~ 222 (653)
T TIGR00232 144 YTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRISIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDA 222 (653)
T ss_pred EEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCeeecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHH
Confidence 89999999999999999999999999999999999999999999987765 578999999999999999 9999999999
Q ss_pred HHHHHHhhCCCcEEEEeee
Q psy786 157 VSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 157 al~~a~~~~~~P~lI~~~~ 175 (176)
|+++|.+..++|++|++++
T Consensus 223 A~~~a~~~~~~P~~I~~~T 241 (653)
T TIGR00232 223 AIEEAKASKDKPTLIEVTT 241 (653)
T ss_pred HHHHHHhCCCCCEEEEEEe
Confidence 9999853334899999875
No 6
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=7.3e-34 Score=254.92 Aligned_cols=165 Identities=27% Similarity=0.339 Sum_probs=151.2
Q ss_pred hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCC---------Ccce
Q psy786 10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDK---------ASYR 78 (176)
Q Consensus 10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~---------~~~~ 78 (176)
+.||++|+..|+ ++.|+|.+||+.++.++|||++. +|+++.++|++|++++.|+|+|+|.|+++. .+.+
T Consensus 69 ~~lYa~l~~~G~~~~~e~L~~fr~~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~ 148 (663)
T PRK12753 69 MLLYSLLHLTGYDLPIEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHY 148 (663)
T ss_pred HHHHHHHHHhCCCCCHHHHHHhccCCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCE
Confidence 469999999998 99999999999999999999984 899999999999999999999999987531 1578
Q ss_pred EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEE-ecCCCHHHHHHH
Q psy786 79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVV-VDGHDVEHLVKV 157 (176)
Q Consensus 79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~-vdG~d~~~l~~a 157 (176)
|+|++|||++++|.+||++++|+.++||+|++|+|||++++++++.... ..++.+++++|||++++ |||||++++.+|
T Consensus 149 v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a 227 (663)
T PRK12753 149 TYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIKEA 227 (663)
T ss_pred EEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999888765 57899999999999995 999999999999
Q ss_pred HHHHHhhCCCcEEEEeee
Q psy786 158 SSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 158 l~~a~~~~~~P~lI~~~~ 175 (176)
+++|.+..++|++|++++
T Consensus 228 ~~~a~~~~~~P~~I~~~T 245 (663)
T PRK12753 228 ILEAQSVKDKPSLIICRT 245 (663)
T ss_pred HHHHHHCCCCeEEEEEEE
Confidence 999975557999999875
No 7
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-33 Score=246.33 Aligned_cols=166 Identities=34% Similarity=0.448 Sum_probs=153.3
Q ss_pred ChHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCC---------Ccc
Q psy786 9 RTNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDK---------ASY 77 (176)
Q Consensus 9 ~~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~---------~~~ 77 (176)
+..||++|++.|+ ++.|+|.+||+++|..+|||+.. +++++.++|++|+|++.|||+|+|.+++.. -|.
T Consensus 70 SmllYsllhl~Gy~ls~edLk~FRQ~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh 149 (663)
T COG0021 70 SMLLYSLLHLTGYDLSLEDLKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDH 149 (663)
T ss_pred hHHHHHHHHHccCCCCHHHHHhhccCCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccc
Confidence 3469999999999 99999999999999999999975 899999999999999999999999987632 246
Q ss_pred eEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEE-EecCCCHHHHHH
Q psy786 78 RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAV-VVDGHDVEHLVK 156 (176)
Q Consensus 78 ~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~vdG~d~~~l~~ 156 (176)
.++|++|||++++|..+|+..+|..++|.+||+++|+|..+|++.+...+ .+|.++++++|||+++ .+||+|++++.+
T Consensus 150 ~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f-~ed~~~RfeAyGW~vi~~~DG~D~e~I~~ 228 (663)
T COG0021 150 YTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSF-TEDVAKRFEAYGWNVIRVIDGHDLEAIDK 228 (663)
T ss_pred eEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCccccc-chhHHHHHHhcCCeEEEecCCCCHHHHHH
Confidence 89999999999999999999999999999999999999999999988877 5899999999999999 569999999999
Q ss_pred HHHHHHhhCCCcEEEEeee
Q psy786 157 VSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 157 al~~a~~~~~~P~lI~~~~ 175 (176)
|+++|....++|++|+++.
T Consensus 229 Ai~~Ak~~~dkPtlI~~kT 247 (663)
T COG0021 229 AIEEAKASTDKPTLIIVKT 247 (663)
T ss_pred HHHHHHhcCCCCeEEEEEe
Confidence 9999976578999999874
No 8
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=100.00 E-value=3.6e-33 Score=233.96 Aligned_cols=167 Identities=22% Similarity=0.252 Sum_probs=150.0
Q ss_pred ChHHHHHHHHcCCCCHHHHhhhhhcCC--CCCCCCCCC-CC-ccccCCcccchhHHHHHHHHHhchhc------CCCcce
Q psy786 9 RTNRSKAWAEAGLFPVSELKNLRKIDS--DLEGHPTPR-LN-FIDVGTGSLGQGLSVAAGMAYVGKYF------DKASYR 78 (176)
Q Consensus 9 ~~~~ya~l~~~G~~~~e~l~~~r~~~~--~l~~~~~~~-~~-~~~~~~g~~G~~l~~AvG~A~a~~~~------~~~~~~ 78 (176)
.+.+|++|+..|++|.|+|.+||+.++ .+++||++. .| +++.++|++|++++.|+|+|++.|++ .+.+.+
T Consensus 70 s~~lYA~L~l~G~~~~edL~~fr~~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~r 149 (386)
T cd02017 70 SPGIYARAFLEGRLTEEQLDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQK 149 (386)
T ss_pred cHHHHHHHHHcCCCCHHHHHhhccCCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCe
Confidence 356999999999999999999999998 699999874 45 59999999999999999999999863 235688
Q ss_pred EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc-cccHHHHHHHhhcCceEEEec----------
Q psy786 79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ-HQTEVYRKRLDAFGFNAVVVD---------- 147 (176)
Q Consensus 79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~~vd---------- 147 (176)
|+|++|||++++|.+||++.+|+.++|++|++|+|+|++++++++... ....++.+.+++|||++++|+
T Consensus 150 vyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~ 229 (386)
T cd02017 150 VWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLA 229 (386)
T ss_pred EEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccCCcccccccCchhHHHHHHhcCCEEEEEecCCcchhhhc
Confidence 999999999999999999999999999999999999999999988874 356899999999999999997
Q ss_pred -----------------------------------------------------------CCCHHHHHHHHHHHHhhCCCc
Q psy786 148 -----------------------------------------------------------GHDVEHLVKVSSFKLQKAIGC 168 (176)
Q Consensus 148 -----------------------------------------------------------G~d~~~l~~al~~a~~~~~~P 168 (176)
|||.++|.+|++++.+..++|
T Consensus 230 ~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~~~kP 309 (386)
T cd02017 230 KDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEHKGKP 309 (386)
T ss_pred cCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhCCCCC
Confidence 999999999999986445789
Q ss_pred EEEEeee
Q psy786 169 VWIQRGC 175 (176)
Q Consensus 169 ~lI~~~~ 175 (176)
++|.+++
T Consensus 310 t~Iia~T 316 (386)
T cd02017 310 TVILAKT 316 (386)
T ss_pred eEEEEeC
Confidence 9998764
No 9
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=5.7e-33 Score=248.43 Aligned_cols=164 Identities=36% Similarity=0.479 Sum_probs=149.2
Q ss_pred hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCC---------Ccce
Q psy786 10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDK---------ASYR 78 (176)
Q Consensus 10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~---------~~~~ 78 (176)
+.+|++|+.+|+ ++++++.+||++++.+++||++. +|++++++|+||+++|.|+|+|++.++.+. .+++
T Consensus 73 ~~~Ya~l~~~G~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~ 152 (624)
T PRK05899 73 MLLYSLLHLAGYDLSIDDLKNFRQLGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHY 152 (624)
T ss_pred HHHHHHHHHcCCCCCHHHHHHhcCCCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCe
Confidence 568999999999 99999999999999999999984 789999999999999999999999985432 1679
Q ss_pred EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHH
Q psy786 79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVS 158 (176)
Q Consensus 79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al 158 (176)
|+|++|||++++|.+||++++|++++||++++|+|||+|+++++.... ...++.+++++|||++++|||+|++++.+++
T Consensus 153 v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~~-~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al 231 (624)
T PRK05899 153 TYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEGW-FTEDVKKRFEAYGWHVIEVDGHDVEAIDAAI 231 (624)
T ss_pred EEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCccccccccc-ccccHHHHhccCCCeEEEECCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999876643 3578999999999999999999999999999
Q ss_pred HHHHhhCCCcEEEEeee
Q psy786 159 SFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 159 ~~a~~~~~~P~lI~~~~ 175 (176)
++|. +.++|++|++++
T Consensus 232 ~~a~-~~~~P~vI~v~t 247 (624)
T PRK05899 232 EEAK-ASTKPTLIIAKT 247 (624)
T ss_pred HHHH-hcCCCEEEEEEe
Confidence 9996 457999999876
No 10
>PLN02790 transketolase
Probab=100.00 E-value=1.6e-32 Score=246.26 Aligned_cols=165 Identities=29% Similarity=0.400 Sum_probs=149.7
Q ss_pred hHHHHHHHHcCC--CCHHHHhhhhhcCCCCCCCCCC-CCCccccCCcccchhHHHHHHHHHhchhc----CCC-----cc
Q psy786 10 TNRSKAWAEAGL--FPVSELKNLRKIDSDLEGHPTP-RLNFIDVGTGSLGQGLSVAAGMAYVGKYF----DKA-----SY 77 (176)
Q Consensus 10 ~~~ya~l~~~G~--~~~e~l~~~r~~~~~l~~~~~~-~~~~~~~~~g~~G~~l~~AvG~A~a~~~~----~~~-----~~ 77 (176)
+.||++|+..|+ ++.|+|.+||+.++.++|||++ .+|+++.++|++|++++.|+|+|+|.|++ +++ +.
T Consensus 59 ~~lYa~l~~~G~~~~~~~~l~~~r~~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~ 138 (654)
T PLN02790 59 MLQYALLHLAGYDSVQMEDLKQFRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDH 138 (654)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHhccCCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCC
Confidence 569999999998 7999999999999999999998 47999999999999999999999999853 232 57
Q ss_pred eEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecC--CCHHHHH
Q psy786 78 RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDG--HDVEHLV 155 (176)
Q Consensus 78 ~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG--~d~~~l~ 155 (176)
+|+|++|||++++|.+||++++|+.++||++++|+|||++++++++.... ..++.+++++|||+++.||| +|.+++.
T Consensus 139 ~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~G~~~~~vdgg~hd~~~l~ 217 (654)
T PLN02790 139 YTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISIDGDTEIAF-TEDVDKRYEALGWHTIWVKNGNTDYDEIR 217 (654)
T ss_pred EEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCccccCCccccc-chhHHHHHHHcCCeEEEECCCCCCHHHHH
Confidence 89999999999999999999999999999999999999999999887654 56888999999999999977 8999999
Q ss_pred HHHHHHHhhCCCcEEEEeee
Q psy786 156 KVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 156 ~al~~a~~~~~~P~lI~~~~ 175 (176)
+|+++|.+..++|++|++++
T Consensus 218 ~a~~~a~~~~~~P~lI~~~T 237 (654)
T PLN02790 218 AAIKEAKAVTDKPTLIKVTT 237 (654)
T ss_pred HHHHHHHhcCCCeEEEEEEE
Confidence 99999964367999999875
No 11
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=1e-32 Score=247.61 Aligned_cols=165 Identities=29% Similarity=0.400 Sum_probs=150.3
Q ss_pred hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCC---------Ccce
Q psy786 10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDK---------ASYR 78 (176)
Q Consensus 10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~---------~~~~ 78 (176)
+.||++|+..|+ ++.|+|.+||+.++.+++||++. +|++++++|++|++++.|+|+|+|.|+++. .+.+
T Consensus 71 ~~lYa~l~l~G~~~~~~~l~~fr~~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~ 150 (661)
T PTZ00089 71 ALLYSMLHLTGYDLSMEDLKNFRQLGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNY 150 (661)
T ss_pred HHHHHHHHHcCCCCCHHHHHhcCCCCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCE
Confidence 468999999998 99999999999999999999975 789999999999999999999999987532 1678
Q ss_pred EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEe-cCC-CHHHHHH
Q psy786 79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVV-DGH-DVEHLVK 156 (176)
Q Consensus 79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v-dG~-d~~~l~~ 156 (176)
|+|++|||++++|.+||+++.|+.++||+|++|+|||++++++++.... ..++.+++++|||+++.| ||+ |++++.+
T Consensus 151 v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~ 229 (661)
T PTZ00089 151 VYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLSF-TEDVEKKYEAYGWHVIEVDNGNTDFDGLRK 229 (661)
T ss_pred EEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCcccccCccccc-CccHHHHHHhcCCcEEEeCCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999887653 467889999999999999 999 9999999
Q ss_pred HHHHHHhhCCCcEEEEeee
Q psy786 157 VSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 157 al~~a~~~~~~P~lI~~~~ 175 (176)
|+++|.+..++|++|++++
T Consensus 230 a~~~a~~~~~~P~~I~~~T 248 (661)
T PTZ00089 230 AIEEAKKSKGKPKLIIVKT 248 (661)
T ss_pred HHHHHHhcCCCcEEEEEEe
Confidence 9999975457999999875
No 12
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.98 E-value=1.2e-31 Score=243.60 Aligned_cols=167 Identities=22% Similarity=0.277 Sum_probs=150.2
Q ss_pred ChHHHHHHHHcCCCCHHHHhhhhhc--CCCCCCCCCCC-CC-ccccCCcccchhHHHHHHHHHhchhcCC------Ccce
Q psy786 9 RTNRSKAWAEAGLFPVSELKNLRKI--DSDLEGHPTPR-LN-FIDVGTGSLGQGLSVAAGMAYVGKYFDK------ASYR 78 (176)
Q Consensus 9 ~~~~ya~l~~~G~~~~e~l~~~r~~--~~~l~~~~~~~-~~-~~~~~~g~~G~~l~~AvG~A~a~~~~~~------~~~~ 78 (176)
.+.+||+|+..|+++.|+|.+||+. ++++++||+|+ +| ++++++|+||+|++.|+|+|++.|++.. .+++
T Consensus 141 sp~lYA~l~l~G~l~~e~L~~fRq~~~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~r 220 (889)
T TIGR03186 141 APGVYARAFLEGFLSDAQLAHYRQEIAGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRK 220 (889)
T ss_pred HHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCce
Confidence 4679999999999999999999999 78899988886 46 6999999999999999999999886542 3688
Q ss_pred EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccc-cHHHHHHHhhcCceEEEe-----------
Q psy786 79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQ-TEVYRKRLDAFGFNAVVV----------- 146 (176)
Q Consensus 79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~-~~~~~~~a~a~G~~~~~v----------- 146 (176)
|+|++|||++++|.+||++.+|+++||++|++|+|+|..++++++..... ..++.+.+++|||++++|
T Consensus 221 Vy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~ 300 (889)
T TIGR03186 221 VWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFA 300 (889)
T ss_pred EEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhc
Confidence 99999999999999999999999999999999999999999998876433 578999999999999999
Q ss_pred ----------------------------------------------------------cCCCHHHHHHHHHHHHhhCCCc
Q psy786 147 ----------------------------------------------------------DGHDVEHLVKVSSFKLQKAIGC 168 (176)
Q Consensus 147 ----------------------------------------------------------dG~d~~~l~~al~~a~~~~~~P 168 (176)
+|||++++++|+++|.+...+|
T Consensus 301 ~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~~~~P 380 (889)
T TIGR03186 301 RDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRHEGRP 380 (889)
T ss_pred cccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhCCCCC
Confidence 5999999999999997555799
Q ss_pred EEEEeee
Q psy786 169 VWIQRGC 175 (176)
Q Consensus 169 ~lI~~~~ 175 (176)
++|.+++
T Consensus 381 TvIla~T 387 (889)
T TIGR03186 381 TVILAKT 387 (889)
T ss_pred EEEEEEe
Confidence 9998764
No 13
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.98 E-value=2.1e-31 Score=207.30 Aligned_cols=151 Identities=26% Similarity=0.362 Sum_probs=132.5
Q ss_pred HHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCc
Q psy786 13 SKAWAEAGLFPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEG 91 (176)
Q Consensus 13 ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G 91 (176)
|+.+..+|. +++|++||+.++ +++||++. +|+.+.++|++|+++|.|+|+|++.|+ .+.+++|+|++|||++++|
T Consensus 37 ~~~~~~~g~--~~~l~~~~~~~~-~~g~p~~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~-~~~~~~vv~~~GDG~~~eG 112 (195)
T cd02007 37 YPHKILTGR--RDQFHTLRQYGG-LSGFTKRSESEYDAFGTGHSSTSISAALGMAVARDL-KGKKRKVIAVIGDGALTGG 112 (195)
T ss_pred HHHHHHHCC--HHHHhhhhcCCC-CCCCCcCCCCCCceECCCchhhhHHHHHHHHHHHHH-hCCCCeEEEEEcccccccC
Confidence 666777785 689999999998 99999875 578888999999999999999999986 3456899999999999999
Q ss_pred hHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEE-ecCCCHHHHHHHHHHHHhhCCCcEE
Q psy786 92 SIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVV-VDGHDVEHLVKVSSFKLQKAIGCVW 170 (176)
Q Consensus 92 ~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~-vdG~d~~~l~~al~~a~~~~~~P~l 170 (176)
++||++++|+++++| +++|++||+|+++++++ +..++++++||+... |||+|++++.+++++|. +.++|++
T Consensus 113 ~~~Eal~~A~~~~~~-li~vvdnN~~~~~~~~~------~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~-~~~~P~~ 184 (195)
T cd02007 113 MAFEALNNAGYLKSN-MIVILNDNEMSISPNVG------TPGNLFEELGFRYIGPVDGHNIEALIKVLKEVK-DLKGPVL 184 (195)
T ss_pred hHHHHHHHHHHhCCC-EEEEEECCCcccCCCCC------CHHHHHHhcCCCccceECCCCHHHHHHHHHHHH-hCCCCEE
Confidence 999999999999777 67799999999987665 356788899999985 89999999999999986 4679999
Q ss_pred EEeee
Q psy786 171 IQRGC 175 (176)
Q Consensus 171 I~~~~ 175 (176)
|++++
T Consensus 185 I~~~T 189 (195)
T cd02007 185 LHVVT 189 (195)
T ss_pred EEEEE
Confidence 99875
No 14
>KOG0523|consensus
Probab=99.98 E-value=2.3e-31 Score=229.59 Aligned_cols=165 Identities=43% Similarity=0.678 Sum_probs=152.1
Q ss_pred hHHHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccC
Q psy786 10 TNRSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESA 89 (176)
Q Consensus 10 ~~~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~ 89 (176)
+-||+++.+.|.+++|+|.+||++++..++||+++.|+++.++|++|++++.|+|+|++.|+++..+.+|+|++|||+++
T Consensus 75 ~llYa~~~l~G~~~~edl~~~Rq~~s~t~ghp~~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~ 154 (632)
T KOG0523|consen 75 PLLYAHWHLAGYDREEDLKNFRQIGSDTPGHPEPELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLT 154 (632)
T ss_pred hHHHHHHHHhccCcHHHHHHHHhhCCCCCCCCcccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhc
Confidence 35899999999999999999999999999999999999999999999999999999999999887678999999999999
Q ss_pred CchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcE
Q psy786 90 EGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCV 169 (176)
Q Consensus 90 ~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~ 169 (176)
+|..||++++|..++|++|++|+|||..++++.+...+..+-+....++|||++..|||+|.+++.+++.+|.....+|+
T Consensus 155 eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~~k~kpt 234 (632)
T KOG0523|consen 155 EGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLGFDEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKSVKGKPT 234 (632)
T ss_pred cchHHHHHhhhhhcccCCEEEEEccccccCCCCCcccccccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhhccCCce
Confidence 99999999999999999999999999999999888776544455599999999999999999999999999975567898
Q ss_pred EEEee
Q psy786 170 WIQRG 174 (176)
Q Consensus 170 lI~~~ 174 (176)
.|-.+
T Consensus 235 ~i~~~ 239 (632)
T KOG0523|consen 235 AIKAT 239 (632)
T ss_pred eeeee
Confidence 87654
No 15
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.97 E-value=4e-31 Score=238.26 Aligned_cols=167 Identities=23% Similarity=0.265 Sum_probs=150.0
Q ss_pred ChHHHHHHHHcCCCCHHHHhhhhhc--CCCCCCCCCCC-CC-ccccCCcccchhHHHHHHHHHhchhc------CCCcce
Q psy786 9 RTNRSKAWAEAGLFPVSELKNLRKI--DSDLEGHPTPR-LN-FIDVGTGSLGQGLSVAAGMAYVGKYF------DKASYR 78 (176)
Q Consensus 9 ~~~~ya~l~~~G~~~~e~l~~~r~~--~~~l~~~~~~~-~~-~~~~~~g~~G~~l~~AvG~A~a~~~~------~~~~~~ 78 (176)
.+.+||+|+..|++++|+|.+||+. ++++++||+|. +| ++++++|+||+|++.|+|.|++.|++ +..+++
T Consensus 141 sp~lYA~L~l~G~ls~e~L~~FRq~~~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~r 220 (885)
T TIGR00759 141 APGIYARAFLEGRLTEEQLDNFRQEVQGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQK 220 (885)
T ss_pred HHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCce
Confidence 3579999999999999999999995 78899999986 46 59999999999999999999999963 345789
Q ss_pred EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccc-cHHHHHHHhhcCceEEEe-----------
Q psy786 79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQ-TEVYRKRLDAFGFNAVVV----------- 146 (176)
Q Consensus 79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~-~~~~~~~a~a~G~~~~~v----------- 146 (176)
|+|++|||++++|.+||++.+|++++|++|++|+|+|..++++++..... ..+++++++++||++++|
T Consensus 221 VyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~ 300 (885)
T TIGR00759 221 VWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLA 300 (885)
T ss_pred EEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhhc
Confidence 99999999999999999999999999999999999999999998876543 578999999999999999
Q ss_pred ----------------------------------------------------------cCCCHHHHHHHHHHHHhhCCCc
Q psy786 147 ----------------------------------------------------------DGHDVEHLVKVSSFKLQKAIGC 168 (176)
Q Consensus 147 ----------------------------------------------------------dG~d~~~l~~al~~a~~~~~~P 168 (176)
+|||++++.+|+++|.+...+|
T Consensus 301 ~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~~grP 380 (885)
T TIGR00759 301 RDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEHKGQP 380 (885)
T ss_pred CCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhCCCCC
Confidence 5999999999999987545689
Q ss_pred EEEEeee
Q psy786 169 VWIQRGC 175 (176)
Q Consensus 169 ~lI~~~~ 175 (176)
++|.+++
T Consensus 381 TvIlA~T 387 (885)
T TIGR00759 381 TVILAKT 387 (885)
T ss_pred EEEEEee
Confidence 9998764
No 16
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.97 E-value=2.4e-30 Score=235.85 Aligned_cols=167 Identities=23% Similarity=0.275 Sum_probs=151.0
Q ss_pred ChHHHHHHHHcCCCCHHHHhhhhhc--CCCCCCCCCCC-CC-ccccCCcccchhHHHHHHHHHhchhc------CCCcce
Q psy786 9 RTNRSKAWAEAGLFPVSELKNLRKI--DSDLEGHPTPR-LN-FIDVGTGSLGQGLSVAAGMAYVGKYF------DKASYR 78 (176)
Q Consensus 9 ~~~~ya~l~~~G~~~~e~l~~~r~~--~~~l~~~~~~~-~~-~~~~~~g~~G~~l~~AvG~A~a~~~~------~~~~~~ 78 (176)
++.+||++...|+++.|+|.+||+. ++++++||+|+ +| ++++++|+||.|++.|+|.|+++||+ +..+++
T Consensus 155 sp~lYA~~~l~G~l~~e~L~~fR~~~~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~ 234 (896)
T PRK13012 155 APGIYARAFLEGRLSEEQLDHFRQEIGGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRK 234 (896)
T ss_pred HHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCe
Confidence 3679999999999999999999988 58899999987 56 69999999999999999999999965 445689
Q ss_pred EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccc-cHHHHHHHhhcCceEEEe-----------
Q psy786 79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQ-TEVYRKRLDAFGFNAVVV----------- 146 (176)
Q Consensus 79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~-~~~~~~~a~a~G~~~~~v----------- 146 (176)
|+|++|||++++|.+|||+.+|++++|++|++|+|+|..++++++..... ..++++.++++||++++|
T Consensus 235 v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~ 314 (896)
T PRK13012 235 VWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFA 314 (896)
T ss_pred EEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhc
Confidence 99999999999999999999999999999999999999999998876543 478999999999999999
Q ss_pred ---------------c-------------------------------------------CCCHHHHHHHHHHHHhhCCCc
Q psy786 147 ---------------D-------------------------------------------GHDVEHLVKVSSFKLQKAIGC 168 (176)
Q Consensus 147 ---------------d-------------------------------------------G~d~~~l~~al~~a~~~~~~P 168 (176)
| |||++++++|+++|.+...+|
T Consensus 315 ~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~~~~P 394 (896)
T PRK13012 315 RDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRHKGQP 394 (896)
T ss_pred CCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhCCCCC
Confidence 8 999999999999987555689
Q ss_pred EEEEeee
Q psy786 169 VWIQRGC 175 (176)
Q Consensus 169 ~lI~~~~ 175 (176)
++|-+++
T Consensus 395 tvIla~T 401 (896)
T PRK13012 395 TVILAKT 401 (896)
T ss_pred EEEEEEe
Confidence 9998764
No 17
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.97 E-value=1.6e-29 Score=229.75 Aligned_cols=167 Identities=23% Similarity=0.278 Sum_probs=150.6
Q ss_pred ChHHHHHHHHcCCCCHHHHhhhhhc--CCCCCCCCCCC-CC-ccccCCcccchhHHHHHHHHHhchhc------CCCcce
Q psy786 9 RTNRSKAWAEAGLFPVSELKNLRKI--DSDLEGHPTPR-LN-FIDVGTGSLGQGLSVAAGMAYVGKYF------DKASYR 78 (176)
Q Consensus 9 ~~~~ya~l~~~G~~~~e~l~~~r~~--~~~l~~~~~~~-~~-~~~~~~g~~G~~l~~AvG~A~a~~~~------~~~~~~ 78 (176)
++.+||+++..|++++|+|.+||+. +++|++||+|+ +| ++++.+++||.|++.|+|.|+++|++ +..+++
T Consensus 147 sp~lYA~~~l~G~l~~e~L~~fR~~~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~r 226 (891)
T PRK09405 147 SPGIYARAFLEGRLTEEQLDNFRQEVDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQK 226 (891)
T ss_pred HHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCce
Confidence 4679999999999999999999998 78899999986 56 68899999999999999999999965 445789
Q ss_pred EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccc-cHHHHHHHhhcCceEEEe-----------
Q psy786 79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQ-TEVYRKRLDAFGFNAVVV----------- 146 (176)
Q Consensus 79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~-~~~~~~~a~a~G~~~~~v----------- 146 (176)
|+|++|||++++|.+||++.+|++++|++|++|+|+|..++++++..... ..++.++++++||++++|
T Consensus 227 v~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~ 306 (891)
T PRK09405 227 VWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLA 306 (891)
T ss_pred EEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhc
Confidence 99999999999999999999999999999999999999999998876432 578999999999999999
Q ss_pred ---------------c-------------------------------------------CCCHHHHHHHHHHHHhhCCCc
Q psy786 147 ---------------D-------------------------------------------GHDVEHLVKVSSFKLQKAIGC 168 (176)
Q Consensus 147 ---------------d-------------------------------------------G~d~~~l~~al~~a~~~~~~P 168 (176)
| |||++++.+|+++|.+...+|
T Consensus 307 ~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~~~~P 386 (891)
T PRK09405 307 KDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEHKGQP 386 (891)
T ss_pred cCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhCCCCC
Confidence 4 999999999999997555789
Q ss_pred EEEEeee
Q psy786 169 VWIQRGC 175 (176)
Q Consensus 169 ~lI~~~~ 175 (176)
++|.+++
T Consensus 387 tvIia~T 393 (891)
T PRK09405 387 TVILAKT 393 (891)
T ss_pred EEEEEec
Confidence 9998764
No 18
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.97 E-value=1.5e-29 Score=224.71 Aligned_cols=159 Identities=24% Similarity=0.312 Sum_probs=139.6
Q ss_pred HHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCC
Q psy786 12 RSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAE 90 (176)
Q Consensus 12 ~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~ 90 (176)
-|+.+..+|+ .|+|.+||+.++ ++|||++. .|++++++|++|+++|.|+|+|++.++.++++++|+|++|||++++
T Consensus 78 ~y~~~~~~g~--~~~l~~~~~~~s-~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~e 154 (580)
T PRK05444 78 AYPHKILTGR--RDRFDTLRQKGG-LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTG 154 (580)
T ss_pred HHHHHHHhCc--HHHhcCcccCCC-CCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEccccccc
Confidence 4999999996 689999999998 89999974 6899999999999999999999999864356789999999999999
Q ss_pred chHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc---cccHHHHHHHhhcCceEE-EecCCCHHHHHHHHHHHHhhCC
Q psy786 91 GSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ---HQTEVYRKRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKAI 166 (176)
Q Consensus 91 G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~---~~~~~~~~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~~ 166 (176)
|++||++++|+++++| +++|+|||+|++++++... ....++.+++++|||+++ .|||+|++++.++++++. ..+
T Consensus 155 G~~~Eal~~A~~~~~n-li~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~-~~~ 232 (580)
T PRK05444 155 GMAFEALNNAGDLKSD-LIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAK-DLK 232 (580)
T ss_pred CHHHHHHHHHHhhCCC-EEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHH-hCC
Confidence 9999999999999977 6899999999988776433 223566789999999999 589999999999999986 457
Q ss_pred CcEEEEeee
Q psy786 167 GCVWIQRGC 175 (176)
Q Consensus 167 ~P~lI~~~~ 175 (176)
+|++|++++
T Consensus 233 ~P~lI~~~T 241 (580)
T PRK05444 233 GPVLLHVVT 241 (580)
T ss_pred CCEEEEEEe
Confidence 999999875
No 19
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.96 E-value=9.3e-29 Score=203.30 Aligned_cols=169 Identities=26% Similarity=0.329 Sum_probs=135.4
Q ss_pred CCCCChH-HHHHHHHcCCCCHHHHhhh--hhcC----CCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcc
Q psy786 5 EIPFRTN-RSKAWAEAGLFPVSELKNL--RKID----SDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASY 77 (176)
Q Consensus 5 ~~~~~~~-~ya~l~~~G~~~~e~l~~~--r~~~----~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~ 77 (176)
|..|... -++.++++|+.+.+.+..+ |..| .+.+.|.....+++...+|+||+++|+|+|+|++.++ .++++
T Consensus 49 D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~-~~~~~ 127 (293)
T cd02000 49 DWVFPTYRDHGHALARGVDLKEMLAELFGKETGPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKY-RGEDR 127 (293)
T ss_pred CEEEecchhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHH-hCCCC
Confidence 4444444 5778888998766666555 2222 2234555433456777899999999999999999985 45678
Q ss_pred eEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHH
Q psy786 78 RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKV 157 (176)
Q Consensus 78 ~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~a 157 (176)
+|||++|||++++|.++|+|++|++++|| +++|++||+|+++++.+...+.+++.+++++||+++++|||+|++++.++
T Consensus 128 ~vv~~~GDGa~~~g~~~E~l~~A~~~~lP-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a 206 (293)
T cd02000 128 VAVCFFGDGATNEGDFHEALNFAALWKLP-VIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEA 206 (293)
T ss_pred EEEEEeCCCccccchHHHHHHHHHhhCCC-EEEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHH
Confidence 99999999999999999999999999999 55666677899988776666678999999999999999999999999999
Q ss_pred HHHHHhh---CCCcEEEEeee
Q psy786 158 SSFKLQK---AIGCVWIQRGC 175 (176)
Q Consensus 158 l~~a~~~---~~~P~lI~~~~ 175 (176)
+++|++. .++|+|||+.|
T Consensus 207 ~~~A~~~ar~~~~P~lIev~~ 227 (293)
T cd02000 207 AKEAVERARAGGGPTLIEAVT 227 (293)
T ss_pred HHHHHHHHHccCCCEEEEEEE
Confidence 9998753 46899999875
No 20
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=99.96 E-value=3e-29 Score=208.60 Aligned_cols=170 Identities=25% Similarity=0.324 Sum_probs=138.1
Q ss_pred CCCCChH-HHHHHHHcCCCCHHHHhhh--hhc----CCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcc
Q psy786 5 EIPFRTN-RSKAWAEAGLFPVSELKNL--RKI----DSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASY 77 (176)
Q Consensus 5 ~~~~~~~-~ya~l~~~G~~~~e~l~~~--r~~----~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~ 77 (176)
|.-|++. -++.++.+|+-+.+.|..+ |.. |...+.|......++...++++|.++|.|+|+|+|.|+++..++
T Consensus 81 D~i~~~YR~h~~~l~~G~~~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~ 160 (358)
T COG1071 81 DWIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDG 160 (358)
T ss_pred CEeecccCccccceecCCCHHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCc
Confidence 5555555 5778888897666655554 223 34455554322334556789999999999999999998765667
Q ss_pred eEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHH
Q psy786 78 RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKV 157 (176)
Q Consensus 78 ~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~a 157 (176)
+++|++|||+..+|.++|+||+|+.|||| +||+++||+|+|+.+...+.....++..+.+||+++++|||+|+.+++++
T Consensus 161 Va~~~~GDGat~qG~FhEalN~A~v~klP-vvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~ 239 (358)
T COG1071 161 VAVAFFGDGATNQGDFHEALNFAAVWKLP-VVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEA 239 (358)
T ss_pred EEEEEecCCccccchHHHHHHHHHHhcCC-EEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHH
Confidence 99999999999999999999999999999 78999999999997766566556777799999999999999999999999
Q ss_pred HHHHHhhC---CCcEEEEeee
Q psy786 158 SSFKLQKA---IGCVWIQRGC 175 (176)
Q Consensus 158 l~~a~~~~---~~P~lI~~~~ 175 (176)
.++|++++ ++|+|||..+
T Consensus 240 ~~~A~e~AR~g~GPtLIE~~t 260 (358)
T COG1071 240 AKEAVERARAGEGPTLIEAVT 260 (358)
T ss_pred HHHHHHHHHcCCCCEEEEEEE
Confidence 99998754 4899999864
No 21
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.96 E-value=3e-28 Score=202.08 Aligned_cols=171 Identities=20% Similarity=0.328 Sum_probs=134.6
Q ss_pred CCCCCCChH-HHHHHHHcCCCCHHHHhhh--hhcC----CCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCC
Q psy786 3 TNEIPFRTN-RSKAWAEAGLFPVSELKNL--RKID----SDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKA 75 (176)
Q Consensus 3 ~~~~~~~~~-~ya~l~~~G~~~~e~l~~~--r~~~----~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~ 75 (176)
.+|.-|.+. =++.++++|+.+.+.+..+ |..| ...+.|....-.++....++||+++|.|+|+|++.++ .++
T Consensus 53 ~~D~~~~~yR~~~~~la~G~~~~~~~~~~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~-~~~ 131 (315)
T TIGR03182 53 PDDYVITSYRDHGHALARGVPPKEVMAELTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKY-RGN 131 (315)
T ss_pred CCCEEEechhhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHH-hCC
Confidence 345666666 5788889997666555544 2212 1123344322234556789999999999999999985 456
Q ss_pred cceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHH
Q psy786 76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLV 155 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~ 155 (176)
+++|+|++|||++++|.++|+|++|+.+++| +++|+.||+|+++++.+.....+++++++++||+++++|||+|+.++.
T Consensus 132 ~~~vv~~~GDGa~~~g~~~ealn~A~~~~lP-vi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~ 210 (315)
T TIGR03182 132 DNVTACFFGDGAANQGQFYESFNMAALWKLP-VIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVR 210 (315)
T ss_pred CCEEEEEeCCCcccccHHHHHHHHhhccCcC-EEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHH
Confidence 7899999999999999999999999999999 555566678999988776666688999999999999999999999999
Q ss_pred HHHHHHHhh---CCCcEEEEeee
Q psy786 156 KVSSFKLQK---AIGCVWIQRGC 175 (176)
Q Consensus 156 ~al~~a~~~---~~~P~lI~~~~ 175 (176)
+++++|+++ .++|+|||+.|
T Consensus 211 ~a~~~A~~~ar~~~gP~lIe~~t 233 (315)
T TIGR03182 211 EAAKEAVERARSGKGPILLEMKT 233 (315)
T ss_pred HHHHHHHHHHHccCCCEEEEEeC
Confidence 999988863 36899999976
No 22
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.96 E-value=3.7e-28 Score=203.28 Aligned_cols=172 Identities=21% Similarity=0.291 Sum_probs=134.7
Q ss_pred CCCCCCChH-HHHHHHHcCCCCHHHHhhhh--hcC----CCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcC--
Q psy786 3 TNEIPFRTN-RSKAWAEAGLFPVSELKNLR--KID----SDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFD-- 73 (176)
Q Consensus 3 ~~~~~~~~~-~ya~l~~~G~~~~e~l~~~r--~~~----~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~-- 73 (176)
.+|.-|.+. -++.++.+|+.+.+.+..+. ..| ...+.|.......+-..+++||+++|.|+|+|++.|+.+
T Consensus 71 ~~D~~~~~yR~~~~~la~G~~~~~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~ 150 (341)
T CHL00149 71 ETDYVCSTYRDHVHALSKGVPPKNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQV 150 (341)
T ss_pred CCCEEEcccccHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccc
Confidence 345566665 67889999987777666552 112 223445432222333678999999999999999987644
Q ss_pred ----CCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCC
Q psy786 74 ----KASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGH 149 (176)
Q Consensus 74 ----~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~ 149 (176)
.++++|+|++|||++++|.++|+|++|++|+|| +++|+.||+|+++++.+.....+++.+++++||+++++|||+
T Consensus 151 ~~~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~ 229 (341)
T CHL00149 151 LKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLWKLP-IIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGM 229 (341)
T ss_pred cccCCCCCEEEEEeCCchhhhcHHHHHHHHHhhcCCC-EEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCC
Confidence 257899999999999999999999999999999 677778899988877665555689999999999999999999
Q ss_pred CHHHHHHHHHHHHhh---CCCcEEEEeee
Q psy786 150 DVEHLVKVSSFKLQK---AIGCVWIQRGC 175 (176)
Q Consensus 150 d~~~l~~al~~a~~~---~~~P~lI~~~~ 175 (176)
|+.++++++++|+++ .++|+|||+.|
T Consensus 230 d~~av~~a~~~A~~~ar~~~gP~lIev~t 258 (341)
T CHL00149 230 DVLAVREVAKEAVERARQGDGPTLIEALT 258 (341)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 999888777777653 46899999975
No 23
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.95 E-value=1.8e-27 Score=212.54 Aligned_cols=165 Identities=26% Similarity=0.369 Sum_probs=138.2
Q ss_pred CCCCChH--HHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCCCCcccc-CCcccchhHHHHHHHHHhchhcCCCcceEEE
Q psy786 5 EIPFRTN--RSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDV-GTGSLGQGLSVAAGMAYVGKYFDKASYRTYC 81 (176)
Q Consensus 5 ~~~~~~~--~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~~~~~~~-~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~ 81 (176)
.+-|+.+ -|+.+..+|+ .|+|.+||+.++ ++|||++..++++. ++|++|++++.|+|+|+|.++ .+.+.+|+|
T Consensus 63 r~i~s~GH~~Y~~~~~~G~--~~~l~~~r~~g~-l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~-~~~~~~v~~ 138 (617)
T TIGR00204 63 QFIWDVGHQAYPHKLLTGR--REKFSTLRQKKG-LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEK-KGADRKTVC 138 (617)
T ss_pred cEEEecchHHHHHHHHhCc--HHHhcchhhcCC-cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHh-hCCCCEEEE
Confidence 3444444 5999999997 589999999997 99999987777775 899999999999999999986 456679999
Q ss_pred EECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccc--------------------------c-HH-HH
Q psy786 82 LVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQ--------------------------T-EV-YR 133 (176)
Q Consensus 82 ~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~--------------------------~-~~-~~ 133 (176)
++|||++++|.+||+++.|+.++||+ ++|+|||++++++++..... . .+ +.
T Consensus 139 ~~GDG~~~eG~~~Ea~~~a~~~~l~~-i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 217 (617)
T TIGR00204 139 VIGDGAITAGMAFEALNHAGDLKTDM-IVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLA 217 (617)
T ss_pred EECCcccccccHHHHHHHHHhcCCCE-EEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHH
Confidence 99999999999999999999999996 89999999999987642210 0 01 22
Q ss_pred H--------------HHhhcCceEE-EecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 134 K--------------RLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 134 ~--------------~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
+ ++++|||+++ .|||||.+++.++++++. ..++|++|++++
T Consensus 218 ~~~~~~~k~~~~~~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak-~~~~P~~i~~~T 273 (617)
T TIGR00204 218 KRTEESMKGLVVPGTFFEELGFNYIGPVDGHDLLELIETLKNAK-KLKGPVFLHIQT 273 (617)
T ss_pred HHHHHhhhhccCccchHHHcCCcEEcccCCCCHHHHHHHHHHHh-cCCCCEEEEEEe
Confidence 2 3889999999 899999999999999874 457899999875
No 24
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.95 E-value=4e-27 Score=197.21 Aligned_cols=169 Identities=24% Similarity=0.273 Sum_probs=131.2
Q ss_pred CCCCCCCChH-HHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEE
Q psy786 2 KTNEIPFRTN-RSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTY 80 (176)
Q Consensus 2 ~~~~~~~~~~-~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv 80 (176)
+.+|..|.+. =++..+..|+.+.+.+..+.....+. +..+. .++...+++||+++|.|+|+|++.|+ .+++++|+
T Consensus 73 ~~~D~~~~~yR~h~~~l~~G~~~~~~~ae~~g~~~g~--~~~~~-~~~~g~~~~vG~~lp~AiGaAla~k~-~~~~~~vv 148 (341)
T TIGR03181 73 RKDDWVFPSYRDHAAMLARGVPLVEILLYWRGDERGS--WDPEG-VNILPPNIPIGTQYLHAAGVAYALKL-RGEDNVAV 148 (341)
T ss_pred CCCCEEEcchhhHHHHHHcCCCHHHHHHHhcCcCcCC--CCchh-cCccCCCchHhcchhHHHhHHHHHHh-hCCCCEEE
Confidence 3345556665 57888899987776665542222111 11222 24445789999999999999999985 56788999
Q ss_pred EEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHH
Q psy786 81 CLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSF 160 (176)
Q Consensus 81 ~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~ 160 (176)
|++|||++++|.++|+|++|++++|| +++|+.||+|+++++.......+++.+++++||+++++|||+|..++++++++
T Consensus 149 ~~~GDGa~~~g~~~EaL~tA~~~~LP-vi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~ 227 (341)
T TIGR03181 149 TYFGDGGTSEGDFYEALNFAGVFKAP-VVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKE 227 (341)
T ss_pred EEecCCccccChHHHHHHHHhccCCC-EEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHH
Confidence 99999999999899999999999999 55666678899887665555567899999999999999999999888887777
Q ss_pred HHhh---CCCcEEEEeee
Q psy786 161 KLQK---AIGCVWIQRGC 175 (176)
Q Consensus 161 a~~~---~~~P~lI~~~~ 175 (176)
|+++ .++|+|||+.+
T Consensus 228 A~~~a~~~~gP~lIev~t 245 (341)
T TIGR03181 228 AVERARSGGGPTLIEAVT 245 (341)
T ss_pred HHHHHHcCCCCEEEEEEe
Confidence 7653 36899999975
No 25
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.95 E-value=1e-26 Score=199.29 Aligned_cols=171 Identities=21% Similarity=0.282 Sum_probs=130.5
Q ss_pred CCCCCChH-HHHHHHHcCCCCHHHHhhh--hhcC----CCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcC---
Q psy786 4 NEIPFRTN-RSKAWAEAGLFPVSELKNL--RKID----SDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFD--- 73 (176)
Q Consensus 4 ~~~~~~~~-~ya~l~~~G~~~~e~l~~~--r~~~----~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~--- 73 (176)
+|.-|.+. =++..+++|+.+++.|..+ +..| .+.+.|....-.++...+++||+++|.|+|+|++.|+.+
T Consensus 138 ~D~v~~~yR~h~~~La~G~~~~~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~ 217 (433)
T PLN02374 138 DDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVL 217 (433)
T ss_pred CCEEEccCcChHHhhhcCCCHHHHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccc
Confidence 34444433 3566678897666666555 2112 222334332222455678999999999999999988643
Q ss_pred ---CCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCC
Q psy786 74 ---KASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHD 150 (176)
Q Consensus 74 ---~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d 150 (176)
.++++|+|++|||++++|.++|+|++|+.|+|| +++|+.||+|+++.+.......+++++++++||+++++|||+|
T Consensus 218 ~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LP-vIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D 296 (433)
T PLN02374 218 KEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMD 296 (433)
T ss_pred cccCCCCEEEEEECCCccccChHHHHHHHHHHhCCC-EEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCC
Confidence 257899999999999999999999999999999 7778888999888766555556789999999999999999999
Q ss_pred HHHHHHHHHHHHhh---CCCcEEEEeee
Q psy786 151 VEHLVKVSSFKLQK---AIGCVWIQRGC 175 (176)
Q Consensus 151 ~~~l~~al~~a~~~---~~~P~lI~~~~ 175 (176)
+.++++++++|+++ .++|+|||+.|
T Consensus 297 ~~av~~a~~~A~~~Ar~g~gP~LIe~~t 324 (433)
T PLN02374 297 VLKVREVAKEAIERARRGEGPTLVECET 324 (433)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEE
Confidence 99999877777653 36899999865
No 26
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=99.95 E-value=1.4e-27 Score=196.87 Aligned_cols=161 Identities=24% Similarity=0.301 Sum_probs=126.8
Q ss_pred HHHHHHcCCCCHHHHhhhhhcC----CCCC-CCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCc
Q psy786 13 SKAWAEAGLFPVSELKNLRKID----SDLE-GHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGE 87 (176)
Q Consensus 13 ya~l~~~G~~~~e~l~~~r~~~----~~l~-~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~ 87 (176)
++.++..|.-+.+.+..+.... .+.. .|...+...+...++++|.++|.|+|.|++.|. .+.+..++|++|||+
T Consensus 56 ~~~~la~g~~~~~~~~e~~g~~~g~~g~~~~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~-~~~~~v~v~~~GDga 134 (300)
T PF00676_consen 56 HGHALARGIDLEEIFAELLGKAKGHGGGRHPLHFSDKGLNILGASSPVGAQVPIAAGVALAIKY-RGKDGVVVCFFGDGA 134 (300)
T ss_dssp HHHHHHTTT-HHHHHHHHHTBTTSTTTTGCTTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHH-TTSSEEEEEEEETGG
T ss_pred hhhhhhccccccchhHHhcCcccCCCCCccccccccccceeeeccccccccCccccchhHhhhh-cCCceeEEEEecCcc
Confidence 4556778866555555552221 1111 221111223555788999999999999999996 556789999999999
Q ss_pred cCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh---
Q psy786 88 SAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK--- 164 (176)
Q Consensus 88 ~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~--- 164 (176)
..+|.++|+|++|+.|+|| ++|||+||+|+++++...+....++.++|++||+++++|||+|+.++.+++++|+++
T Consensus 135 ~~qG~~~EalN~A~~~~lP-vifvveNN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~ 213 (300)
T PF00676_consen 135 TSQGDFHEALNLAALWKLP-VIFVVENNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARA 213 (300)
T ss_dssp GGSHHHHHHHHHHHHTTTS-EEEEEEEESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHT
T ss_pred cccCccHHHHHHHhhccCC-eEEEEecCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999 688899999999999888777778899999999999999999999999999999874
Q ss_pred CCCcEEEEeee
Q psy786 165 AIGCVWIQRGC 175 (176)
Q Consensus 165 ~~~P~lI~~~~ 175 (176)
-++|+|||+.|
T Consensus 214 g~gP~lie~~t 224 (300)
T PF00676_consen 214 GKGPVLIEAVT 224 (300)
T ss_dssp TT--EEEEEEE
T ss_pred CCCCEEEEEee
Confidence 36999999875
No 27
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.94 E-value=2.8e-26 Score=204.10 Aligned_cols=159 Identities=26% Similarity=0.359 Sum_probs=132.2
Q ss_pred HHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCC
Q psy786 12 RSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAE 90 (176)
Q Consensus 12 ~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~ 90 (176)
-|+.+..+|+. ++|.+||+.++ ++|||++. .|+..+++|++|+++++|+|+|+|.+. .+.+.+|+|++|||++++
T Consensus 138 aya~~~ltgr~--~~l~t~r~~gg-l~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l-~g~~~~v~~viGDGel~e 213 (641)
T PLN02234 138 SYPHKILTGRR--GKMKTIRQTNG-LSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDL-KGMNNSVVSVIGDGAMTA 213 (641)
T ss_pred HHHHHHHHhhh--hhhcccccCCC-cCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHh-CCCCCeEEEEEccchhhh
Confidence 58888888874 57889999997 99999975 678999999999999999999999986 455678999999999999
Q ss_pred chHHHHHHHhhhcCCCcEEEEEecCCCc------cccCccccccc---------------HHHHHHHhhcCceEE-EecC
Q psy786 91 GSIWEALHFASYYKLDNLCVIFDINRLG------QSEPTSLQHQT---------------EVYRKRLDAFGFNAV-VVDG 148 (176)
Q Consensus 91 G~~~eal~~a~~~~lp~liiV~~nn~~~------~~~~~~~~~~~---------------~~~~~~a~a~G~~~~-~vdG 148 (176)
|+.|||++.|+..+ +++++|+|+|++. ..+.++..... .+...++++|||+++ .|||
T Consensus 214 G~~wEAl~~a~~~~-~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDG 292 (641)
T PLN02234 214 GQAYEAMNNAGYLH-SNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVDG 292 (641)
T ss_pred HHHHHHHHHHhhhC-CCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeECC
Confidence 99999999999655 7799999999984 33333221111 245789999999999 9999
Q ss_pred CCHHHHHHHHHHHHhhC-CCcEEEEeee
Q psy786 149 HDVEHLVKVSSFKLQKA-IGCVWIQRGC 175 (176)
Q Consensus 149 ~d~~~l~~al~~a~~~~-~~P~lI~~~~ 175 (176)
||.++|.++++++.+.. .+|++|++++
T Consensus 293 Hd~~~l~~al~~~k~~~~~~P~vI~~~T 320 (641)
T PLN02234 293 HNIDDLVSILETLKSTKTIGPVLIHVVT 320 (641)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEEE
Confidence 99999999999875332 5899999875
No 28
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.94 E-value=4.2e-26 Score=179.95 Aligned_cols=149 Identities=22% Similarity=0.374 Sum_probs=127.8
Q ss_pred hHHHHHHHHcC----CCCHHH-----Hh-hhhhcC--CCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcc
Q psy786 10 TNRSKAWAEAG----LFPVSE-----LK-NLRKID--SDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASY 77 (176)
Q Consensus 10 ~~~ya~l~~~G----~~~~e~-----l~-~~r~~~--~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~ 77 (176)
+.+|+.++..| ++|... |. .||+++ .++++|+.+.+|++...+|++|++++.|+|+++.. ++.
T Consensus 7 ~~l~a~l~l~G~~~~~~p~~~~~~~gl~~lf~qfs~~gg~psH~~~~tpGi~~~~G~LG~gLs~A~G~a~d~-----~d~ 81 (227)
T cd02011 7 PAVLANLYLEGSYSEFYPEISQDEEGMRKLFKQFSFPGGIPSHAAPETPGSIHEGGELGYSLSHAYGAVFDN-----PDL 81 (227)
T ss_pred HHHHHHHHhcCCCccccccccccHHHHHHHHHhcCCCCCCCCCCcccCCCeeecccchhhHHHHHHHhhhcC-----CCc
Confidence 56999999999 333332 43 567653 22999999889999999999999999999998744 478
Q ss_pred eEEEEECCCccCCchH---HHHHHHhhhcCCCcEEEEEecCCCccccCcccc-cccHHHHHHHhhcCceEEEecCCCHHH
Q psy786 78 RTYCLVGDGESAEGSI---WEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ-HQTEVYRKRLDAFGFNAVVVDGHDVEH 153 (176)
Q Consensus 78 ~vv~~~GDG~~~~G~~---~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~~vdG~d~~~ 153 (176)
+|+|++|||++++|.+ |++..++..+++.+|+.|++||+|++++++... .+..++.+++++|||++++|||+|+++
T Consensus 82 iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~~~yG~~~~~VDG~D~~a 161 (227)
T cd02011 82 IVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALFRGYGYEPYFVEGDDPET 161 (227)
T ss_pred EEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHHHhCCCceEEECCCCHHH
Confidence 9999999999999985 888889999999999999999999999998855 456789999999999999999999999
Q ss_pred HHHHHHHHHh
Q psy786 154 LVKVSSFKLQ 163 (176)
Q Consensus 154 l~~al~~a~~ 163 (176)
+.+++++|++
T Consensus 162 v~~~~a~a~~ 171 (227)
T cd02011 162 MHQAMAATLD 171 (227)
T ss_pred HHHHHHHHHH
Confidence 9988887765
No 29
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.94 E-value=1.4e-26 Score=176.49 Aligned_cols=116 Identities=22% Similarity=0.111 Sum_probs=101.5
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc---
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ--- 126 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~--- 126 (176)
...|+||+++|.|+|++++.+ +++|+|++|||+|++ ..++|+||++++||++++|+|||+|++....+..
T Consensus 45 ~~~g~mG~~lp~AiGa~la~~-----~~~vv~i~GDG~f~~--~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~ 117 (172)
T cd02004 45 GTFGTLGVGLGYAIAAALARP-----DKRVVLVEGDGAFGF--SGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYG 117 (172)
T ss_pred CCCCcccchHHHHHHHHHhCC-----CCeEEEEEcchhhcC--CHHHHHHHHHcCCCEEEEEEECcccccchhhhhhhcc
Confidence 467999999999999999986 789999999999997 4577999999999999999999999987643321
Q ss_pred --------cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 127 --------HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 127 --------~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
...+|+.+++++||+++.+|+ +++++.+++++++ ..++|+|||+.+
T Consensus 118 ~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~liev~i 171 (172)
T cd02004 118 LGLPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRAL-ASGKPALINVII 171 (172)
T ss_pred CCCceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH-HcCCCEEEEEEc
Confidence 245799999999999999997 7999999999997 468999999986
No 30
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.94 E-value=1e-26 Score=181.05 Aligned_cols=117 Identities=19% Similarity=0.225 Sum_probs=100.9
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---- 125 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---- 125 (176)
.+.|+||+++|+|+|++++.+ +++|||++|||+|+| ..++|.||+++++|++++|+||++|++....+.
T Consensus 50 ~~~g~mG~~lpaaiGa~la~p-----~r~vv~i~GDG~f~m--~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~ 122 (196)
T cd02013 50 LSFGNCGYALPAIIGAKAAAP-----DRPVVAIAGDGAWGM--SMMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYN 122 (196)
T ss_pred CCCcccccHHHHHHHHHHhCC-----CCcEEEEEcchHHhc--cHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcC
Confidence 467999999999999999876 789999999999997 356799999999999999999999998653211
Q ss_pred ------ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh--hCCCcEEEEeee
Q psy786 126 ------QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ--KAIGCVWIQRGC 175 (176)
Q Consensus 126 ------~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~--~~~~P~lI~~~~ 175 (176)
....+||+++|++||+++++|+ ++++|.+++++|++ +.++|+|||+++
T Consensus 123 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~p~liev~v 178 (196)
T cd02013 123 NRFVGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAEGKTTVIEIVC 178 (196)
T ss_pred CCcccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCCCCCeEEEEEEe
Confidence 2235799999999999999997 89999999999984 168999999976
No 31
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.94 E-value=8.5e-26 Score=202.39 Aligned_cols=159 Identities=23% Similarity=0.318 Sum_probs=123.6
Q ss_pred HHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCC
Q psy786 12 RSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAE 90 (176)
Q Consensus 12 ~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~ 90 (176)
-|+.+...|+ +|+|.+||+.++ ++|||++. .++-....++-+.+++.|+|+|++.+. .+++++|+|++|||++++
T Consensus 80 ~Y~~~~l~g~--~~~l~~~r~~~~-l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~-~~~~~~v~~v~GDG~~~e 155 (641)
T PRK12571 80 CYPHKILTGR--RDRFRTLRQKGG-LSGFTKRSESEYDPFGAAHSSTSISAALGFAKARAL-GQPDGDVVAVIGDGSLTA 155 (641)
T ss_pred HHHHHHHhCC--HHHHhhhhhCCC-cCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHH-hCCCCeEEEEEeCchhhc
Confidence 4999999996 799999999997 99998863 343122233334445666666666664 345789999999999999
Q ss_pred chHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-------cccccHHH-------------------------------
Q psy786 91 GSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS-------LQHQTEVY------------------------------- 132 (176)
Q Consensus 91 G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~-------~~~~~~~~------------------------------- 132 (176)
|++||++++|+++++| +++|+|||++++++++. .......|
T Consensus 156 G~~~Eal~~a~~~~~~-li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (641)
T PRK12571 156 GMAYEALNNAGAADRR-LIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTG 234 (641)
T ss_pred chHHHHHHHHHHhCCC-EEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhh
Confidence 9999999999999997 67899999999988764 11111111
Q ss_pred ----HHHHhhcCceEE-EecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 133 ----RKRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 133 ----~~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
..++++|||+++ .|||||.++|.+|++++.+..++|++|++++
T Consensus 235 ~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~~~~P~~I~~~T 282 (641)
T PRK12571 235 MIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARARADGPVLVHVVT 282 (641)
T ss_pred ccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 478999999999 7999999999999999853357899999864
No 32
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=99.93 E-value=1.5e-25 Score=188.60 Aligned_cols=170 Identities=21% Similarity=0.292 Sum_probs=132.6
Q ss_pred CCCCCCCChH-HHHHHHHcCCCCHHHHhhh--hhcC----CCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCC
Q psy786 2 KTNEIPFRTN-RSKAWAEAGLFPVSELKNL--RKID----SDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK 74 (176)
Q Consensus 2 ~~~~~~~~~~-~ya~l~~~G~~~~e~l~~~--r~~~----~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~ 74 (176)
+.+|.-|.+. -++.++++|+.+.+.+..+ |..| .+.+.|....-.++...++++|.++|+|+|+|+|.|+ .+
T Consensus 80 ~~~D~~~~~yR~hg~~la~G~~~~~~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~-~~ 158 (362)
T PLN02269 80 TKEDAIITAYRDHCTHLGRGGTVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKY-NK 158 (362)
T ss_pred CCCCEEEechhhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHH-hC
Confidence 3455566666 6788999998766655544 2222 1223443222223446789999999999999999996 44
Q ss_pred CcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHH
Q psy786 75 ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHL 154 (176)
Q Consensus 75 ~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l 154 (176)
.+++++|++|||++++|.+||++++|+.|+|| +++|++||+|+++++.+......++.+ +++++++++|||+|+.++
T Consensus 159 ~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lP-vvfvveNN~~aist~~~~~~~~~~~~~--~~~~~p~~~VDG~D~~av 235 (362)
T PLN02269 159 EENVAFALYGDGAANQGQLFEALNIAALWDLP-VIFVCENNHYGMGTAEWRAAKSPAYYK--RGDYVPGLKVDGMDVLAV 235 (362)
T ss_pred CCCeEEEEECCCCcccCHHHHHHHHhhccCcC-EEEEEeCCCEeccCchhhhccchHHHH--hhcCCCeEEECCCCHHHH
Confidence 56799999999999999999999999999999 888999999999988766665566664 557899999999999999
Q ss_pred HHHHHHHHhh--CCCcEEEEeee
Q psy786 155 VKVSSFKLQK--AIGCVWIQRGC 175 (176)
Q Consensus 155 ~~al~~a~~~--~~~P~lI~~~~ 175 (176)
.+++++|+++ .++|+|||..|
T Consensus 236 ~~a~~~A~~~aR~~gP~lIe~~t 258 (362)
T PLN02269 236 KQACKFAKEHALSNGPIVLEMDT 258 (362)
T ss_pred HHHHHHHHHHHHhCCCEEEEEec
Confidence 9999998752 37899999875
No 33
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.93 E-value=3e-26 Score=179.05 Aligned_cols=117 Identities=18% Similarity=0.111 Sum_probs=100.3
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---- 125 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---- 125 (176)
...|+||+++|.|+|++++.+ +++|||++|||+|+|. .++|+||++++||+++||+||++|++....+.
T Consensus 54 ~~~GsmG~~lpaaiGa~la~p-----~~~vv~i~GDG~f~m~--~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~ 126 (202)
T cd02006 54 GQAGPLGWTVPAALGVAAADP-----DRQVVALSGDYDFQFM--IEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDM 126 (202)
T ss_pred CCccchhhhhHHHHhHHhhCC-----CCeEEEEEeChHhhcc--HHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcC
Confidence 367999999999999999986 7899999999999974 46799999999999999999999997543211
Q ss_pred ---------c-------cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEeee
Q psy786 126 ---------Q-------HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQRGC 175 (176)
Q Consensus 126 ---------~-------~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~~ 175 (176)
. .+.+||+++|++||+++++|+ ++++|.+++++|++ ..++|+|||+++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i 193 (202)
T cd02006 127 DYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAIL 193 (202)
T ss_pred ccccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEe
Confidence 0 014799999999999999996 89999999999985 258999999986
No 34
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.93 E-value=1.4e-25 Score=175.68 Aligned_cols=116 Identities=17% Similarity=0.147 Sum_probs=100.0
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---- 125 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---- 125 (176)
.+.|+||+++|.|+|++++.+ +++|||++|||+|+++ .++|.||+++++|++++|+||++|++....+.
T Consensus 45 ~~~gsmG~~lpaAiGa~la~p-----~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 117 (205)
T cd02003 45 YGYSCMGYEIAAGLGAKLAKP-----DREVYVLVGDGSYLML--HSEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGS 117 (205)
T ss_pred CCcchhhhHHHHHHHHHHhCC-----CCeEEEEEccchhhcc--HHHHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcC
Confidence 467999999999999999876 7899999999999974 45799999999999999999999987542110
Q ss_pred -------------------ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 -------------------QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 -------------------~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
....+||.++|++||+++++|+ +++++.+++++|+ +.++|+|||+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~-~~~gp~lIeV~v 183 (205)
T cd02003 118 GSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAK-ASDRTTVIVIKT 183 (205)
T ss_pred ccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 0124799999999999999996 8999999999997 578999999975
No 35
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.93 E-value=2.1e-25 Score=171.16 Aligned_cols=118 Identities=21% Similarity=0.237 Sum_probs=101.5
Q ss_pred cccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc---
Q psy786 48 IDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS--- 124 (176)
Q Consensus 48 ~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~--- 124 (176)
...+.|+||+++|.|+|++++.+ +++||+++|||+|++ ..++|.|++++++|++++|+||++|++....+
T Consensus 43 ~~~~~g~mG~~lp~aiGa~la~~-----~~~vv~i~GDG~f~m--~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~ 115 (177)
T cd02010 43 ISNGLATMGVALPGAIGAKLVYP-----DRKVVAVSGDGGFMM--NSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKE 115 (177)
T ss_pred eCCCChhhhhHHHHHHHHHHhCC-----CCcEEEEEcchHHHh--HHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHh
Confidence 34578999999999999999976 789999999999996 45679999999999999999999999864221
Q ss_pred ------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 ------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 ------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.....+||++++++||+++++|+ +++++.+++++++ ..++|+|||+.+
T Consensus 116 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~liev~~ 169 (177)
T cd02010 116 YGRDSGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERAL-AADGVHVIDCPV 169 (177)
T ss_pred cCCcccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 11234699999999999999996 8999999999997 468999999875
No 36
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.93 E-value=7.2e-25 Score=176.75 Aligned_cols=170 Identities=15% Similarity=0.126 Sum_probs=134.0
Q ss_pred CCCChHHHHHHHHcCCCCHHHHhhhhhcC---------CCCCCCCCC-C---C-------CccccCCcccchhHHHHHHH
Q psy786 6 IPFRTNRSKAWAEAGLFPVSELKNLRKID---------SDLEGHPTP-R---L-------NFIDVGTGSLGQGLSVAAGM 65 (176)
Q Consensus 6 ~~~~~~~ya~l~~~G~~~~e~l~~~r~~~---------~~l~~~~~~-~---~-------~~~~~~~g~~G~~l~~AvG~ 65 (176)
||||.-+....-.+|+-+.+.+..|.... .....|... . . ..+-...+.+|...|+|+|+
T Consensus 46 m~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~ 125 (265)
T cd02016 46 MAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGK 125 (265)
T ss_pred cCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhH
Confidence 67888877777678876666666664321 111122111 0 1 12334567899999999999
Q ss_pred HHhchhcCC----CcceEEEEECCCcc-CCchHHHHHHHhhhcCCCc--EEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786 66 AYVGKYFDK----ASYRTYCLVGDGES-AEGSIWEALHFASYYKLDN--LCVIFDINRLGQSEPTSLQHQTEVYRKRLDA 138 (176)
Q Consensus 66 A~a~~~~~~----~~~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp~--liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a 138 (176)
|+|.++.+. .+..++|++|||++ .+|.++|+|++|..+++|+ +++|+.||+|+++++.+...+..++.+++++
T Consensus 126 A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~ 205 (265)
T cd02016 126 TRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKM 205 (265)
T ss_pred HHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHee
Confidence 999997542 36789999999996 6999999999999999984 7788899999999988877777788999999
Q ss_pred cCceEEEecCCCHHHHHHHHHHHHhhC---CCcEEEEeee
Q psy786 139 FGFNAVVVDGHDVEHLVKVSSFKLQKA---IGCVWIQRGC 175 (176)
Q Consensus 139 ~G~~~~~vdG~d~~~l~~al~~a~~~~---~~P~lI~~~~ 175 (176)
||+++++|||+|++++.++.++|+++. ++|+|||+.|
T Consensus 206 ~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~t 245 (265)
T cd02016 206 IGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVC 245 (265)
T ss_pred cCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 999999999999999999999998742 5899999976
No 37
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.92 E-value=1.2e-24 Score=194.97 Aligned_cols=159 Identities=21% Similarity=0.322 Sum_probs=129.1
Q ss_pred HHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCC
Q psy786 12 RSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAE 90 (176)
Q Consensus 12 ~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~ 90 (176)
-|+.+..+|+ .++|.+||+.++ ++|||++. .|+..+++|++|++++.|+|+|+|.++ ++.+++|+|++|||++++
T Consensus 105 ay~~~~l~gr--~~~l~~~r~~g~-l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~-~~~~~~v~~viGDG~~~~ 180 (677)
T PLN02582 105 SYPHKILTGR--RDKMHTMRQTNG-LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDL-KGKKNNVVAVIGDGAMTA 180 (677)
T ss_pred HHHHHHHHcc--HHHhcccccCCC-cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHh-cCCCCEEEEEecccccch
Confidence 4999999997 578999999997 99999975 578888999999999999999999885 556779999999999999
Q ss_pred chHHHHHHHhhhcCCCcEEEEEecCCC-cc--------ccCcccc-------c-------------------c--cHHH-
Q psy786 91 GSIWEALHFASYYKLDNLCVIFDINRL-GQ--------SEPTSLQ-------H-------------------Q--TEVY- 132 (176)
Q Consensus 91 G~~~eal~~a~~~~lp~liiV~~nn~~-~~--------~~~~~~~-------~-------------------~--~~~~- 132 (176)
|++||+++.|+.+++| +++|+|||+. ++ +...... . + ..++
T Consensus 181 G~~~Ealn~a~~~~~~-li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (677)
T PLN02582 181 GQAYEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELA 259 (677)
T ss_pred hhHHHHHHHHHhhCcC-EEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHH
Confidence 9999999999999997 8888999987 33 2111000 0 0 0011
Q ss_pred H---------------HHHhhcCceEE-EecCCCHHHHHHHHHHHHhhC-CCcEEEEeee
Q psy786 133 R---------------KRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKA-IGCVWIQRGC 175 (176)
Q Consensus 133 ~---------------~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~-~~P~lI~~~~ 175 (176)
. .++++|||+++ .|||||.++|.++++++.+.. ++|++|++.+
T Consensus 260 ~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~~~~~P~vihv~T 319 (677)
T PLN02582 260 AKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKSTKTTGPVLIHVVT 319 (677)
T ss_pred HHHHHHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhcCCCCCEEEEEEe
Confidence 0 25899999988 899999999999999986432 6999999864
No 38
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.92 E-value=2.1e-24 Score=191.73 Aligned_cols=157 Identities=18% Similarity=0.208 Sum_probs=127.0
Q ss_pred HHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCC--CCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccC
Q psy786 12 RSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPR--LNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESA 89 (176)
Q Consensus 12 ~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~--~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~ 89 (176)
-|+..+++|+.++. ...|..+ ++.|++.+. .... +..|..|.+++.|+|+|+|.++ .+.+++|+|++|||+++
T Consensus 74 ~~~~~l~~G~~~~~--~~~~~~g-~~~G~~~~~~s~~~~-~~~g~~~~~ls~A~G~A~A~k~-~~~~~~vv~~iGDG~~~ 148 (581)
T PRK12315 74 SYPHKMLTGRKEAF--LDPDHYD-DVTGYTNPEESEHDF-FTVGHTSTSIALATGLAKARDL-KGEKGNIIAVIGDGSLS 148 (581)
T ss_pred hHHHHHHcCCccch--hhHHHcC-CCCCCCCCCCCCCCC-cCCCcHHHHHHHHHHHHHHHHh-cCCCCeEEEEECchhhh
Confidence 48888899975443 3345554 577887764 2222 4678899999999999999886 44567899999999999
Q ss_pred CchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc---------ccccHHHHHHHhhcCceEEEe-cCCCHHHHHHHHH
Q psy786 90 EGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---------QHQTEVYRKRLDAFGFNAVVV-DGHDVEHLVKVSS 159 (176)
Q Consensus 90 ~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---------~~~~~~~~~~a~a~G~~~~~v-dG~d~~~l~~al~ 159 (176)
+|++||+++.|+.|++| +++|+|||+|++++++.. .....++.+++++|||+++.+ ||+|++++.++++
T Consensus 149 eG~~~EAln~A~~~k~~-li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~ 227 (581)
T PRK12315 149 GGLALEGLNNAAELKSN-LIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFK 227 (581)
T ss_pred cchHHHHHHHHHhhCCC-EEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHH
Confidence 99999999999999987 889999999999977642 112234567899999999988 9999999999999
Q ss_pred HHHhhCCCcEEEEeee
Q psy786 160 FKLQKAIGCVWIQRGC 175 (176)
Q Consensus 160 ~a~~~~~~P~lI~~~~ 175 (176)
+|. ..++|++|++++
T Consensus 228 ~a~-~~~gP~~i~~~T 242 (581)
T PRK12315 228 EVK-DIDHPIVLHIHT 242 (581)
T ss_pred HHH-hCCCCEEEEEEe
Confidence 985 467999999875
No 39
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.92 E-value=2.4e-25 Score=171.84 Aligned_cols=116 Identities=24% Similarity=0.291 Sum_probs=99.5
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----- 124 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----- 124 (176)
...|+||+++|.|+|++++.+ +++||+++|||+|++ ..++|+||+++++|++++|+||++|++....+
T Consensus 47 ~~~g~mG~~lp~aiGa~la~~-----~~~vv~i~GDG~f~~--~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~ 119 (186)
T cd02015 47 GGLGTMGFGLPAAIGAKVARP-----DKTVICIDGDGSFQM--NIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYE 119 (186)
T ss_pred CCccchhchHHHHHHHHHhCC-----CCeEEEEEcccHHhc--cHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcC
Confidence 456999999999999999876 689999999999996 45679999999999999999999998753211
Q ss_pred ------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 ------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 ------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
...+.+||++++++||+++++|+ +.+++.+++++|+ ..++|+|||+.+
T Consensus 120 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~liev~~ 173 (186)
T cd02015 120 GRYSHTTLDSNPDFVKLAEAYGIKGLRVE--KPEELEAALKEAL-ASDGPVLLDVLV 173 (186)
T ss_pred CceeeccCCCCCCHHHHHHHCCCceEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 11134799999999999999997 7999999999997 468999999986
No 40
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.92 E-value=1.7e-24 Score=163.12 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=99.6
Q ss_pred CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhc-CCCcEEEEEecCCCccccCccccccc
Q psy786 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYY-KLDNLCVIFDINRLGQSEPTSLQHQT 129 (176)
Q Consensus 51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~-~lp~liiV~~nn~~~~~~~~~~~~~~ 129 (176)
..|+||+++|.|+|++++.+ ++|||++|||+|+|. .++|.|++++ ++|++++|+||++|++...+......
T Consensus 40 ~~gsmG~~lp~AiGa~~a~~------~~Vv~i~GDG~f~m~--~~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~ 111 (157)
T cd02001 40 MLGSMGLAGSIGLGLALGLS------RKVIVVDGDGSLLMN--PGVLLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSN 111 (157)
T ss_pred eecchhhHHHHHHHHHhcCC------CcEEEEECchHHHhc--ccHHHHHHHhcCCCEEEEEEeCccccccCCcCCCCCC
Confidence 38999999999999999864 689999999999964 4569999999 59999999999999987644433346
Q ss_pred HHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeeeC
Q psy786 130 EVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGCC 176 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~~ 176 (176)
+||.++|++||+++++|+ +++++.++++++++ .++|++||+.+.
T Consensus 112 ~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~-~~gp~vi~v~i~ 155 (157)
T cd02001 112 VNLEAWAAACGYLVLSAP--LLGGLGSEFAGLLA-TTGPTLLHAPIA 155 (157)
T ss_pred CCHHHHHHHCCCceEEcC--CHHHHHHHHHHHHh-CCCCEEEEEEec
Confidence 899999999999999996 89999999999984 689999999863
No 41
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.91 E-value=1.3e-24 Score=166.16 Aligned_cols=113 Identities=26% Similarity=0.259 Sum_probs=97.8
Q ss_pred cccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc-------
Q psy786 53 GSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL------- 125 (176)
Q Consensus 53 g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~------- 125 (176)
|+||+++|.|+|++++.+ +++|+|++|||+|+++. ++|++|+++++|++++|+||++|++....+.
T Consensus 49 g~mG~~lp~aiGaala~~-----~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~ 121 (178)
T cd02002 49 GGLGWGLPAAVGAALANP-----DRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGP 121 (178)
T ss_pred ccccchHHHHHHHHhcCC-----CCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCc
Confidence 999999999999999876 68999999999999863 6799999999999999999999998642211
Q ss_pred ----------ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 ----------QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 ----------~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
..+.+|+.+++++||+++++|+ +++++.+++++|+ ..++|++||+++
T Consensus 122 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~vi~v~v 178 (178)
T cd02002 122 GENAPDGLDLLDPGIDFAAIAKAFGVEAERVE--TPEELDEALREAL-AEGGPALIEVVV 178 (178)
T ss_pred ccccccccccCCCCCCHHHHHHHcCCceEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEC
Confidence 1134789999999999999997 6999999999997 468999999874
No 42
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.91 E-value=2.8e-24 Score=164.89 Aligned_cols=118 Identities=21% Similarity=0.180 Sum_probs=100.1
Q ss_pred CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc----
Q psy786 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ---- 126 (176)
Q Consensus 51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~---- 126 (176)
.+|+||+++|.|+|++++.+ +++||+++|||+|++. .+++|.+|+++++|++++|+||++|++...++..
T Consensus 49 ~~g~mG~gl~~AiGa~la~p-----~~~Vv~i~GDG~f~~~-g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~ 122 (178)
T cd02008 49 TCTCMGASIGVAIGMAKASE-----DKKVVAVIGDSTFFHS-GILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGK 122 (178)
T ss_pred ccccCccHHHHHhhHHhhCC-----CCCEEEEecChHHhhc-cHHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcc
Confidence 58999999999999999987 7899999999999863 1578999999999999999999999876543321
Q ss_pred -----cccHHHHHHHhhcCceEEEe-cCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 127 -----HQTEVYRKRLDAFGFNAVVV-DGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 127 -----~~~~~~~~~a~a~G~~~~~v-dG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
....||.+++++||+++++| +.++.+++.+++++|+ +.++|.+|+++.
T Consensus 123 ~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~-~~~gp~lI~v~~ 176 (178)
T cd02008 123 TLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEAL-AVPGVSVIIAKR 176 (178)
T ss_pred cccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHH-hCCCCEEEEEeC
Confidence 12479999999999999998 5667777779999997 568999999874
No 43
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.91 E-value=2.5e-24 Score=162.48 Aligned_cols=120 Identities=25% Similarity=0.319 Sum_probs=103.4
Q ss_pred CccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-
Q psy786 46 NFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS- 124 (176)
Q Consensus 46 ~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~- 124 (176)
.......++||+++|.|+|++++.| +++|++++|||+|++ .++++++|.++++|++++|+||+.|++....+
T Consensus 39 ~~~~~~~g~~G~~~~~a~Gaa~a~~-----~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~ 111 (168)
T cd00568 39 FLTSTGFGAMGYGLPAAIGAALAAP-----DRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQE 111 (168)
T ss_pred EEeCCCchhhhhhHHHHHHHHHhCC-----CCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHHHHH
Confidence 3455678999999999999999987 689999999999997 56889999999999999999999998765431
Q ss_pred ---------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 ---------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 ---------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
...+.+|+.+++++||+++++|+ +++++.+++++++ ..++|++||+++
T Consensus 112 ~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~a~~~a~-~~~~p~~i~v~~ 168 (168)
T cd00568 112 AFYGGRVSGTDLSNPDFAALAEAYGAKGVRVE--DPEDLEAALAEAL-AAGGPALIEVKT 168 (168)
T ss_pred HHcCCCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEC
Confidence 22345689999999999999997 7999999999997 578999999875
No 44
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.91 E-value=3.9e-25 Score=165.47 Aligned_cols=117 Identities=23% Similarity=0.269 Sum_probs=100.2
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc---
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL--- 125 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~--- 125 (176)
+...++||+++|.|+|++++.+ +++||+++|||+|++. ..+|.|+.++++|+++||+||++|++....+.
T Consensus 24 ~~~~g~mG~~~~~aiGa~~a~p-----~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~ 96 (153)
T PF02775_consen 24 SGGFGSMGYALPAAIGAALARP-----DRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNGGYGMTGGQQTPFG 96 (153)
T ss_dssp STTTT-TTTHHHHHHHHHHHST-----TSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESSBSHHHHHHHHHTT
T ss_pred CCCccccCCHHHhhhHHHhhcC-----cceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCCcceEeccccccCc
Confidence 3578999999999999999876 7899999999999974 56799999999999999999999998654311
Q ss_pred -------c---cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEe
Q psy786 126 -------Q---HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQR 173 (176)
Q Consensus 126 -------~---~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~ 173 (176)
. ....||.++++++|+++++|+..|++|+.+++++|+ +.++|+|||+
T Consensus 97 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~-~~~gp~vIeV 153 (153)
T PF02775_consen 97 GGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREAL-ESGGPAVIEV 153 (153)
T ss_dssp STCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHH-HSSSEEEEEE
T ss_pred CcccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHH-hCCCcEEEEc
Confidence 1 445799999999999999997455599999999998 6899999996
No 45
>PRK06163 hypothetical protein; Provisional
Probab=99.91 E-value=4.6e-24 Score=166.83 Aligned_cols=115 Identities=19% Similarity=0.149 Sum_probs=98.5
Q ss_pred CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhc-CCCcEEEEEecCCCccccCcccc-cc
Q psy786 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYY-KLDNLCVIFDINRLGQSEPTSLQ-HQ 128 (176)
Q Consensus 51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~-~lp~liiV~~nn~~~~~~~~~~~-~~ 128 (176)
.+|+||+++|+|+|++++.+ +++|||++|||+|+| ..++|.|++++ ++|+++||+||++|++....... ..
T Consensus 55 ~~GsMG~glpaAiGaalA~p-----~r~Vv~i~GDG~f~m--~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~ 127 (202)
T PRK06163 55 MLGSMGLAFPIALGVALAQP-----KRRVIALEGDGSLLM--QLGALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQ 127 (202)
T ss_pred eecccccHHHHHHHHHHhCC-----CCeEEEEEcchHHHH--HHHHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCC
Confidence 47999999999999999976 789999999999996 45679999887 68999999999999986543222 23
Q ss_pred cHHHHHHHhhcCce-EEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 129 TEVYRKRLDAFGFN-AVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 129 ~~~~~~~a~a~G~~-~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.+||.++|++||++ +++|+ +.++|.+++++++ ..++|+|||+++
T Consensus 128 ~~Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~-~~~~p~lIeV~i 172 (202)
T PRK06163 128 TVDVVAIARGAGLENSHWAA--DEAHFEALVDQAL-SGPGPSFIAVRI 172 (202)
T ss_pred CCCHHHHHHHCCCceEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 47999999999998 67886 8999999999997 568999999975
No 46
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.91 E-value=5.7e-24 Score=164.67 Aligned_cols=115 Identities=19% Similarity=0.222 Sum_probs=98.2
Q ss_pred CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCC-CcEEEEEecCCCccccCccccccc
Q psy786 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKL-DNLCVIFDINRLGQSEPTSLQHQT 129 (176)
Q Consensus 51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~l-p~liiV~~nn~~~~~~~~~~~~~~ 129 (176)
.+|+||+++|.|+|++++.+ +++|+|++|||+|++ ..++|.|++++++ |++++|+||++|++..........
T Consensus 46 ~~g~mG~~lpaAiGaala~p-----~~~Vv~i~GDG~f~m--~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~ 118 (188)
T cd03371 46 TVGSMGHASQIALGIALARP-----DRKVVCIDGDGAALM--HMGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFD 118 (188)
T ss_pred ecCccccHHHHHHHHHHhCC-----CCcEEEEeCCcHHHh--hccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCC
Confidence 35999999999999999986 689999999999996 4577999999997 688999999999886543322335
Q ss_pred HHHHHHHhhcCceE-EEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 130 EVYRKRLDAFGFNA-VVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 130 ~~~~~~a~a~G~~~-~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
+||.+++++||+++ .+|+ +++++.+++++++ +.++|+|||+.+
T Consensus 119 ~d~~~~A~a~G~~~~~~v~--~~~el~~al~~a~-~~~~p~lIev~~ 162 (188)
T cd03371 119 VSLPAIAKACGYRAVYEVP--SLEELVAALAKAL-AADGPAFIEVKV 162 (188)
T ss_pred CCHHHHHHHcCCceEEecC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 79999999999997 4786 8999999999997 468999999976
No 47
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.91 E-value=2.5e-24 Score=164.82 Aligned_cols=116 Identities=20% Similarity=0.141 Sum_probs=98.5
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc---
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL--- 125 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~--- 125 (176)
..+.+.||+++|.|+|++++. +++|||++|||+|++ ..++|.|++++++|++++|+||++|++....+.
T Consensus 47 ~~g~g~mG~~l~~aiGa~la~------~~~Vv~i~GDGsf~m--~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~ 118 (175)
T cd02009 47 NRGASGIDGTLSTALGIALAT------DKPTVLLTGDLSFLH--DLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASF 118 (175)
T ss_pred cCCccchhhHHHHHHHHHhcC------CCCEEEEEehHHHHH--hHHHHHhccccCCCeEEEEEECCCCchheeccCCcc
Confidence 345688999999999999985 468999999999996 356799999999999999999999987542211
Q ss_pred ------cc---ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 ------QH---QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 ------~~---~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.. ..+||.+++++||+++++|+ +++++.+++++++ +.++|++||+.+
T Consensus 119 ~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~lIev~v 174 (175)
T cd02009 119 EDEFERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESAL-AQDGPHVIEVKT 174 (175)
T ss_pred cchhhhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHH-hCCCCEEEEEeC
Confidence 11 24799999999999999996 8999999999997 478999999975
No 48
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.91 E-value=7.3e-24 Score=163.35 Aligned_cols=118 Identities=19% Similarity=0.138 Sum_probs=99.9
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc---
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL--- 125 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~--- 125 (176)
....|+||+++|.|+|++++.+ +++|++++|||+|++. . .+|.|++++++|++++|+|||+|++....+.
T Consensus 46 ~~~~g~mG~~l~~aiGaala~~-----~~~vv~i~GDG~f~~~-~-~el~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~ 118 (183)
T cd02005 46 QPLWGSIGYSVPAALGAALAAP-----DRRVILLVGDGSFQMT-V-QELSTMIRYGLNPIIFLINNDGYTIERAIHGPEA 118 (183)
T ss_pred ccchhhHhhhHHHHHHHHHhCC-----CCeEEEEECCchhhcc-H-HHHHHHHHhCCCCEEEEEECCCcEEEEEeccCCc
Confidence 3467999999999999999986 6899999999999873 4 4599999999999999999999997542211
Q ss_pred ---ccccHHHHHHHhhcC----ceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 ---QHQTEVYRKRLDAFG----FNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 ---~~~~~~~~~~a~a~G----~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
....+||.+++++|| +++.+|+ +++|+.++++++++..++|+|||+.+
T Consensus 119 ~~~~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~~~~~p~liev~~ 173 (183)
T cd02005 119 SYNDIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALFNRDKLSLIEVIL 173 (183)
T ss_pred CcccCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 122479999999999 6899995 89999999999985368999999976
No 49
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.91 E-value=5.7e-24 Score=165.29 Aligned_cols=156 Identities=13% Similarity=0.057 Sum_probs=116.7
Q ss_pred CCCChHHHHHHHHcC---CCCHHHHhhhhhcCCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEE
Q psy786 6 IPFRTNRSKAWAEAG---LFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCL 82 (176)
Q Consensus 6 ~~~~~~~ya~l~~~G---~~~~e~l~~~r~~~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~ 82 (176)
=||++.+|++..+.. ..|++.+ -..+.|+..... ...+ +....++||+++|+|+|++++.+ +++||++
T Consensus 5 c~~~~~~~~~~~~~~~~~~~~~d~i-i~~D~G~~~~~~--~~~~-~~~~~g~mG~glpaAiGa~la~p-----~r~Vv~i 75 (193)
T cd03375 5 CGDGSILKALAKALAELGIDPEKVV-VVSGIGCSSRLP--YYFN-TYGFHTLHGRALAVATGVKLANP-----DLTVIVV 75 (193)
T ss_pred CCcHHHHHHHHHHHHHhCCCCCCEE-EEeCCChhceeh--hhcc-ccchhhhhccHHHHHHHHHHhCC-----CCeEEEE
Confidence 378899999888874 3344422 234455322111 1111 22234899999999999999986 7899999
Q ss_pred ECCCc-cCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc-c---------------cccHHHHHHHhhcCceEE-
Q psy786 83 VGDGE-SAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL-Q---------------HQTEVYRKRLDAFGFNAV- 144 (176)
Q Consensus 83 ~GDG~-~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~-~---------------~~~~~~~~~a~a~G~~~~- 144 (176)
+|||+ |++ ..++|.|++++++|++++|+||+.|++.+.++. . .+.+||.++++++|++++
T Consensus 76 ~GDGs~f~m--~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~ 153 (193)
T cd03375 76 SGDGDLAAI--GGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVA 153 (193)
T ss_pred eccchHhhc--cHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEE
Confidence 99999 565 346799999999999999999999998764321 0 113689999999999985
Q ss_pred --EecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 145 --VVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 145 --~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
+| .+++++.+++++|+ +.++|++||+.+
T Consensus 154 ~~~v--~~~~el~~al~~al-~~~gp~vIev~~ 183 (193)
T cd03375 154 RGFS--GDIKQLKEIIKKAI-QHKGFSFVEVLS 183 (193)
T ss_pred EEec--CCHHHHHHHHHHHH-hcCCCEEEEEEC
Confidence 45 48999999999998 478999999864
No 50
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.91 E-value=1.5e-23 Score=160.74 Aligned_cols=117 Identities=24% Similarity=0.225 Sum_probs=99.2
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---- 124 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---- 124 (176)
....|+||+++|.|+|++++.+ +++|++++|||+|+++ .++|+++.++++|++++|+||++|++....+
T Consensus 47 ~~~~g~mG~~~~~aiGa~~a~~-----~~~vv~i~GDG~f~~~--~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~ 119 (178)
T cd02014 47 SGLLATMGNGLPGAIAAKLAYP-----DRQVIALSGDGGFAML--MGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMG 119 (178)
T ss_pred CCCCchhhhHHHHHHHHHHhCC-----CCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhc
Confidence 3467999999999999999876 6899999999999975 4559999999999999999999998743111
Q ss_pred -----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 -----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 -----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.....+||.+++++||+++++++ +++++.+++++++ ..++|+|||+.+
T Consensus 120 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a~-~~~~p~liev~~ 172 (178)
T cd02014 120 QPEFGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEAL-AADGPVVIDVVT 172 (178)
T ss_pred CCceeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 11234699999999999999997 8999999999997 468999999976
No 51
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.90 E-value=7.3e-24 Score=187.05 Aligned_cols=124 Identities=23% Similarity=0.252 Sum_probs=104.7
Q ss_pred CCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCcccc
Q psy786 42 TPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSE 121 (176)
Q Consensus 42 ~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~ 121 (176)
.|+......+.|+||+++|+|+|++++.+ +++|||++|||+|+| ..++|+||+++++|++++|+||+.|++..
T Consensus 397 ~p~~~~~s~~~GtMG~glPaAIGAkla~P-----~r~Vv~i~GDG~F~m--~~qEL~Ta~r~~lpv~ivv~nN~~~g~v~ 469 (550)
T COG0028 397 RPRRFLTSGGLGTMGFGLPAAIGAKLAAP-----DRKVVAIAGDGGFMM--NGQELETAVRYGLPVKIVVLNNGGYGMVR 469 (550)
T ss_pred CCCcEEcCCCCccccchHHHHHHHHhhCC-----CCcEEEEEcccHHhc--cHHHHHHHHHhCCCEEEEEEECCccccch
Confidence 34433344688999999999999999987 789999999999997 46779999999999999999999999876
Q ss_pred Cccccccc---------HH-HHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 122 PTSLQHQT---------EV-YRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 122 ~~~~~~~~---------~~-~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
..+..... .. |.++|++||+++++|+ +++++.+++++|+ ..++|+|||+.+
T Consensus 470 ~~q~~~~~~~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al-~~~~p~lidv~i 530 (550)
T COG0028 470 QWQELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEAL-ASDGPVLIDVVV 530 (550)
T ss_pred HHHHHhcCCCcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 54322111 12 9999999999999997 9999999999998 578999999864
No 52
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.90 E-value=7.7e-24 Score=188.62 Aligned_cols=117 Identities=16% Similarity=0.074 Sum_probs=100.5
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---- 125 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---- 125 (176)
.++|+||+++|.|+|++++.+ +++||+++|||+|+|. .++|+||+++++|+++||+||++|++....+.
T Consensus 415 ~~~gsmG~glpaaiGa~lA~p-----dr~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~ 487 (588)
T TIGR01504 415 GQAGPLGWTIPAALGVCAADP-----KRNVVALSGDYDFQFM--IEELAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDM 487 (588)
T ss_pred CccccccchHhHHHhhhhhCC-----CCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcc
Confidence 467999999999999999986 7899999999999974 46799999999999999999999987542111
Q ss_pred ------cc----------ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEeee
Q psy786 126 ------QH----------QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQRGC 175 (176)
Q Consensus 126 ------~~----------~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~~ 175 (176)
.. ..+||.++|++||+++.+|+ ++++|.+++++|++ ..++|+|||+++
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i 554 (588)
T TIGR01504 488 DYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVIL 554 (588)
T ss_pred cccceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEe
Confidence 00 13799999999999999996 89999999999985 368999999986
No 53
>PRK05261 putative phosphoketolase; Provisional
Probab=99.89 E-value=1.5e-22 Score=182.63 Aligned_cols=149 Identities=21% Similarity=0.323 Sum_probs=129.0
Q ss_pred ChHHHHHHHHcC-----C--CCHHH--Hh-hhhhcCCC--CCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCc
Q psy786 9 RTNRSKAWAEAG-----L--FPVSE--LK-NLRKIDSD--LEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKAS 76 (176)
Q Consensus 9 ~~~~ya~l~~~G-----~--~~~e~--l~-~~r~~~~~--l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~ 76 (176)
.+.+||.+++.| . ++.++ |. .||++++. +++|+.+.+|++...+|++|++++.|+|+|+..+ +
T Consensus 86 ~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~pgg~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~~~-----d 160 (785)
T PRK05261 86 GPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFSFPGGIPSHAAPETPGSIHEGGELGYSLSHAYGAAFDNP-----D 160 (785)
T ss_pred HHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhccCCCCcCCCCCCCCCCeeeCCCchhhHHHHHHHHHHcCC-----C
Confidence 467999999999 3 44455 77 68999855 9999998899999999999999999999998765 7
Q ss_pred ceEEEEECCCccCCchH---HHHHHHhhhcCCCcEEEEEecCCCccccCcccc-cccHHHHHHHhhcCceEEEecCCCHH
Q psy786 77 YRTYCLVGDGESAEGSI---WEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ-HQTEVYRKRLDAFGFNAVVVDGHDVE 152 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~---~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~~vdG~d~~ 152 (176)
.+|+|++|||++++|.. |++..++..+++.+++.|+++|+|++++++... .+..++.+++++|||+++.|||+|++
T Consensus 161 ~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~ 240 (785)
T PRK05261 161 LIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPA 240 (785)
T ss_pred CEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHH
Confidence 79999999999999873 887788888899999999999999999998865 34578999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy786 153 HLVKVSSFKL 162 (176)
Q Consensus 153 ~l~~al~~a~ 162 (176)
++.+++++|+
T Consensus 241 av~~a~a~al 250 (785)
T PRK05261 241 DMHQEMAAAL 250 (785)
T ss_pred HHHHHHHHHH
Confidence 8888854443
No 54
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.89 E-value=5.2e-23 Score=158.40 Aligned_cols=113 Identities=21% Similarity=0.205 Sum_probs=96.5
Q ss_pred CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcC-CCcEEEEEecCCCccccCccccc-c
Q psy786 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYK-LDNLCVIFDINRLGQSEPTSLQH-Q 128 (176)
Q Consensus 51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~-lp~liiV~~nn~~~~~~~~~~~~-~ 128 (176)
..|+||+++|.|+|++++. +++|||++|||+|+++ .++|.|+++++ +|++++|+||++|++...+.... .
T Consensus 40 ~~gsmG~~lpaAiGa~la~------~~~Vv~i~GDG~f~m~--~~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~ 111 (181)
T TIGR03846 40 MLGSMGLASSIGLGLALAT------DRTVIVIDGDGSLLMN--LGVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASR 111 (181)
T ss_pred eccccccHHHHHHHHHHcC------CCcEEEEEcchHHHhh--hhHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCC
Confidence 3799999999999999985 4689999999999964 46799999999 59999999999999876432222 2
Q ss_pred cHHHHHHHhhcCceEEE-ecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 129 TEVYRKRLDAFGFNAVV-VDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 129 ~~~~~~~a~a~G~~~~~-vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.+||.+++++||+++.+ |+ +++++.++++ ++ ..++|.|||+++
T Consensus 112 ~~d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a~-~~~~p~li~v~~ 155 (181)
T TIGR03846 112 RTDLELVAKAAGIRNVEKVA--DEEELRDALK-AL-AMKGPTFIHVKV 155 (181)
T ss_pred CCCHHHHHHHCCCCeEEEeC--CHHHHHHHHH-HH-cCCCCEEEEEEe
Confidence 57899999999999998 85 8999999997 76 578999999986
No 55
>PRK12474 hypothetical protein; Provisional
Probab=99.89 E-value=3.4e-23 Score=182.01 Aligned_cols=116 Identities=25% Similarity=0.283 Sum_probs=99.5
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----- 124 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----- 124 (176)
..+|+||+++|.|+|+++|.+ +++|||++|||+|+| ..++|+||++++||+++||+||++|++....+
T Consensus 386 ~~~gsmG~glpaAiGa~lA~p-----~r~vv~i~GDG~f~m--~~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~ 458 (518)
T PRK12474 386 LTGGSIGQGLPLAAGAAVAAP-----DRKVVCPQGDGGAAY--TMQALWTMARENLDVTVVIFANRSYAILNGELQRVGA 458 (518)
T ss_pred cCCCccCccHHHHHHHHHHCC-----CCcEEEEEcCchhcc--hHHHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcC
Confidence 345999999999999999986 789999999999997 45679999999999999999999999754210
Q ss_pred ----------c--ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 ----------L--QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 ----------~--~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
. ..+.+||.++|++||+++++|+ +++||.+++++|+ ..++|+|||+.+
T Consensus 459 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~--~~~eL~~al~~a~-~~~~p~liev~~ 518 (518)
T PRK12474 459 QGAGRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAM-AQRGPRLIEAMI 518 (518)
T ss_pred CCCCccccccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-cCCCCEEEEEEC
Confidence 0 0113689999999999999997 8999999999997 578999999864
No 56
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.89 E-value=2.4e-23 Score=185.41 Aligned_cols=118 Identities=16% Similarity=0.214 Sum_probs=100.9
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---- 124 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---- 124 (176)
..++|+||+++|.|+|++++.+ +++||+++|||+|+| ..++|+||+++++|+++||+||++|++....+
T Consensus 433 ~~~~gsmG~glpaaiGa~lA~p-----~r~Vv~i~GDGsf~m--~~~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~ 505 (587)
T PRK06965 433 SGGLGTMGVGLPYAMGIKMAHP-----DDDVVCITGEGSIQM--CIQELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEY 505 (587)
T ss_pred CCCcccccchHHHHHHHHHhCC-----CCcEEEEEcchhhhc--CHHHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhc
Confidence 3467999999999999999976 789999999999997 45679999999999999999999998754211
Q ss_pred -----c-cc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 -----L-QH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 -----~-~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
. .. ..+||.+++++||+++++|+ +.++|.+++++|++..++|+|||+.+
T Consensus 506 ~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~p~lieV~i 561 (587)
T PRK06965 506 SKRYSHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALRLKDRTVFLDFQT 561 (587)
T ss_pred CCCccccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 0 11 24699999999999999996 89999999999985457899999975
No 57
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.89 E-value=2.1e-23 Score=185.23 Aligned_cols=117 Identities=20% Similarity=0.256 Sum_probs=100.3
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---- 125 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---- 125 (176)
.++|+||+++|+|+|++++.+ +++|||++|||+|+| ..++|+||++++||+++||+||++|++....+.
T Consensus 418 ~~~g~mG~glpaaiGa~la~p-----~~~vv~i~GDG~f~m--~~~EL~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~ 490 (572)
T PRK08979 418 GGLGTMGFGLPAAMGVKFAMP-----DETVVCVTGDGSIQM--NIQELSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQ 490 (572)
T ss_pred CCcccccchhhHHHhhhhhCC-----CCeEEEEEcchHhhc--cHHHHHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhC
Confidence 467999999999999999986 789999999999997 446799999999999999999999997642211
Q ss_pred ------c-cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 ------Q-HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 ------~-~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
. ...+||.++|++||.++.+|+ +++||.+++++|++..++|+|||+++
T Consensus 491 ~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~~~~p~lIev~i 545 (572)
T PRK08979 491 GRHSHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALAMKDRLVFVDINV 545 (572)
T ss_pred CcccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1 124699999999999999996 89999999999985348999999875
No 58
>PRK06154 hypothetical protein; Provisional
Probab=99.89 E-value=4.1e-23 Score=183.20 Aligned_cols=117 Identities=20% Similarity=0.114 Sum_probs=100.0
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---- 125 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---- 125 (176)
...|+||+++|.|+|++++.+ +++|||++|||+|+| ..++|+||+++|||+++||+||++|++....+.
T Consensus 428 ~~~gsmG~glpaaiGa~la~p-----~r~Vv~i~GDG~f~m--~~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~ 500 (565)
T PRK06154 428 GKTTQLGYGLGLAMGAKLARP-----DALVINLWGDAAFGM--TGMDFETAVRERIPILTILLNNFSMGGYDKVMPVSTT 500 (565)
T ss_pred CCCcccccHHHHHHHHHHhCC-----CCcEEEEEcchHHhc--cHHHHHHHHHhCCCeEEEEEECCccceeehhhhhhcC
Confidence 357999999999999999986 789999999999997 446799999999999999999999997543211
Q ss_pred ----ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh--hCCCcEEEEeee
Q psy786 126 ----QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ--KAIGCVWIQRGC 175 (176)
Q Consensus 126 ----~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~--~~~~P~lI~~~~ 175 (176)
....+||.++|++||+++++|+ ++++|.+++++|++ +.++|+|||+++
T Consensus 501 ~~~~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~~~~p~lIev~v 554 (565)
T PRK06154 501 KYRATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVKEGTPALLEVIT 554 (565)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhccCCCeEEEEEEe
Confidence 1113699999999999999997 89999999999985 257899999874
No 59
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.89 E-value=9.5e-23 Score=156.69 Aligned_cols=113 Identities=20% Similarity=0.212 Sum_probs=97.2
Q ss_pred CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCC-CcEEEEEecCCCccccCccccc-c
Q psy786 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKL-DNLCVIFDINRLGQSEPTSLQH-Q 128 (176)
Q Consensus 51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~l-p~liiV~~nn~~~~~~~~~~~~-~ 128 (176)
..|+||+++|.|+|++++.+ ++|+|++|||+|+++ .+++.++.++++ |++++|+||++|++...+.... .
T Consensus 40 ~~g~mG~~lp~AiGaala~~------~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~ 111 (179)
T cd03372 40 MLGSMGLASSIGLGLALAQP------RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGK 111 (179)
T ss_pred cccchhhHHHHHHHHHhcCC------CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCC
Confidence 37999999999999999864 589999999999964 467999999995 6888899999999875443322 2
Q ss_pred cHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 129 TEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 129 ~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.+|+.+++++||+++.++++ +++++.+++++++ ++|.+||+++
T Consensus 112 ~~d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~---~gp~lIev~~ 154 (179)
T cd03372 112 KTDLEAVAKACGLDNVATVA-SEEAFEKAVEQAL---DGPSFIHVKI 154 (179)
T ss_pred CCCHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc---CCCEEEEEEE
Confidence 57899999999999999975 8999999999986 7999999986
No 60
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.89 E-value=2.9e-23 Score=185.13 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=100.3
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---- 124 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---- 124 (176)
..++|+||+++|.|+|++++.+ +++||+++|||+|+| ..++|+||++++||+++||+||++|++....+
T Consensus 426 ~~~~gsmG~glpaaiGa~lA~p-----~r~Vv~i~GDG~f~m--~~~EL~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~ 498 (595)
T PRK09107 426 SGGLGTMGYGLPAALGVQIAHP-----DALVIDIAGDASIQM--CIQEMSTAVQYNLPVKIFILNNQYMGMVRQWQQLLH 498 (595)
T ss_pred CCCchhhhhhHHHHHHHHHhCC-----CCeEEEEEcCchhhc--cHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHh
Confidence 3467999999999999999986 789999999999997 44679999999999999999999998754211
Q ss_pred -----cc--cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 -----LQ--HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 -----~~--~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.. ...+||.++|++||+++++|+ ++++|.+++++|+ ..++|+|||+.+
T Consensus 499 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~lIeV~i 553 (595)
T PRK09107 499 GNRLSHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMI-DVDKPVIFDCRV 553 (595)
T ss_pred CCccccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 11 124699999999999999996 8999999999997 468999999975
No 61
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=99.89 E-value=4.5e-23 Score=164.72 Aligned_cols=165 Identities=25% Similarity=0.344 Sum_probs=119.2
Q ss_pred CCCCCChH--HHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCCCCccc-cCCcccchhHHHHHHHHHhchhcCCCcceEE
Q psy786 4 NEIPFRTN--RSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFID-VGTGSLGQGLSVAAGMAYVGKYFDKASYRTY 80 (176)
Q Consensus 4 ~~~~~~~~--~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~~~~~~-~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv 80 (176)
|.+.|+.. -|+....+|+ +|.+.+.|+.+ ++.|+|.+....++ ++.|.-+.++++|+|+|.|+++ .+.++.||
T Consensus 62 DkivwDvGHQ~Y~HKiLTGR--~~~f~TlRq~g-GlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l-~~~~~~vV 137 (270)
T PF13292_consen 62 DKIVWDVGHQAYVHKILTGR--RDRFHTLRQYG-GLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDL-KGEDRKVV 137 (270)
T ss_dssp SEEEESSSTT-HHHHHCTTT--CCCGGGTTSTT-S--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHH-HTS---EE
T ss_pred CeEEEecccccchhhhccCc--HHHhchhhhcC-CcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHh-cCCCCcEE
Confidence 55667776 8999999997 47788999997 69999998755455 5889999999999999999986 44678999
Q ss_pred EEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc-----------------------c---c------
Q psy786 81 CLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ-----------------------H---Q------ 128 (176)
Q Consensus 81 ~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~-----------------------~---~------ 128 (176)
+++|||++.-|+.+|||+-|...+-+ ++||+|||+.+|+...... . .
T Consensus 138 aVIGDGalt~Gma~EALN~~g~~~~~-liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~ 216 (270)
T PF13292_consen 138 AVIGDGALTGGMAFEALNNAGHLKSN-LIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFA 216 (270)
T ss_dssp EEEETTGGGSHHHHHHHHHHHHHT-S-EEEEEEE-SBSSSB--SSHCCC-------------------------------
T ss_pred EEECCcchhHHHHHHHHHHHHhcCCC-EEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999876 8899999999987543100 0 0
Q ss_pred ---cHHH----HHHHhhcCceEE-EecCCCHHHHHHHHHHHHhhCCCcEEEEee
Q psy786 129 ---TEVY----RKRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 129 ---~~~~----~~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~~~P~lI~~~ 174 (176)
...+ ..+++.+|++++ .+||||.++|.++++++. ..++|+||++.
T Consensus 217 ~r~~~s~K~~~~~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K-~~~gPvllHV~ 269 (270)
T PF13292_consen 217 KRIKESLKGFSPNLFEELGFDYIGPIDGHDLEELIEVLENAK-DIDGPVLLHVI 269 (270)
T ss_dssp ------------CCCHHCT-EEEEEEETT-HHHHHHHHHHHC-CSSSEEEEEEE
T ss_pred HHHhhhhhhhhHHHHHHcCCeEEeccCCCCHHHHHHHHHHHh-cCCCCEEEEEe
Confidence 0011 135778899999 789999999999999985 67999999985
No 62
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.89 E-value=3.6e-23 Score=183.84 Aligned_cols=118 Identities=20% Similarity=0.272 Sum_probs=100.6
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---- 124 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---- 124 (176)
..++|+||+++|+|+|++++.+ +++||+++|||+|+| ..++|+||++++||+++||+||++|++....+
T Consensus 417 ~~~~g~mG~glpaaiGa~la~p-----~~~vv~i~GDG~f~m--~~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~ 489 (574)
T PRK07979 417 SGGLGTMGFGLPAALGVKMALP-----EETVVCVTGDGSIQM--NIQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIY 489 (574)
T ss_pred CCCccchhhHHHHHHHHHHhCC-----CCeEEEEEcchhhhc--cHHHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhc
Confidence 3467999999999999999986 789999999999997 45679999999999999999999999754211
Q ss_pred ------cc-cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh--CCCcEEEEeee
Q psy786 125 ------LQ-HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK--AIGCVWIQRGC 175 (176)
Q Consensus 125 ------~~-~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~--~~~P~lI~~~~ 175 (176)
.. .+.+||.++|++||+++++|+ +++||.+++++|++. .++|.|||+.+
T Consensus 490 ~~~~~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~al~~a~~~~~~~~p~lIeV~i 547 (574)
T PRK07979 490 SGRHSQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVRNNRLVFVDVTV 547 (574)
T ss_pred CCccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhccCCCCcEEEEEEE
Confidence 11 134699999999999999996 899999999999853 48999999875
No 63
>PRK07586 hypothetical protein; Validated
Probab=99.89 E-value=6.8e-23 Score=179.81 Aligned_cols=116 Identities=23% Similarity=0.248 Sum_probs=99.5
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----- 124 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----- 124 (176)
...|+||+++|.|+|+++|.+ +++|||++|||+|+| ..++|+||++++||+++||+||++|++....+
T Consensus 382 ~~~g~mG~~lpaaiGa~lA~p-----~r~Vv~i~GDGsf~m--~~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~ 454 (514)
T PRK07586 382 LTGGAIGQGLPLATGAAVACP-----DRKVLALQGDGSAMY--TIQALWTQARENLDVTTVIFANRAYAILRGELARVGA 454 (514)
T ss_pred cCCcccccHHHHHHHHHHhCC-----CCeEEEEEechHHHh--HHHHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcC
Confidence 345999999999999999976 789999999999996 45779999999999999999999999754210
Q ss_pred ------------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 ------------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 ------------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
...+.+||.++|++||+++++|+ ++++|.+++++|+ ..++|.|||+++
T Consensus 455 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~-~~~~p~liev~~ 514 (514)
T PRK07586 455 GNPGPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAAL-AEPGPHLIEAVV 514 (514)
T ss_pred CCCCccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHH-cCCCCEEEEEEC
Confidence 01124699999999999999996 8999999999998 468999999974
No 64
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.88 E-value=1.2e-22 Score=179.32 Aligned_cols=117 Identities=21% Similarity=0.208 Sum_probs=101.0
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc---
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL--- 125 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~--- 125 (176)
..+.|+||+++|.|+|++++.+ +++||+++|||+|+| ..++|+|+++++||+++||+||++|++....+.
T Consensus 404 ~~~~g~mG~~lpaaiGa~la~~-----~~~vv~i~GDGsf~m--~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~ 476 (539)
T TIGR02418 404 SNGMQTLGVALPWAIGAALVRP-----NTKVVSVSGDGGFLF--SSMELETAVRLKLNIVHIIWNDNGYNMVEFQEEMKY 476 (539)
T ss_pred CCCccccccHHHHHHHHHHhCC-----CCcEEEEEcchhhhc--hHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhc
Confidence 3467999999999999999986 789999999999997 456799999999999999999999997642111
Q ss_pred ------ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 ------QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 ------~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
....+||.++|++||+++.+|+ +++||.+++++|+ ..++|+|||+.+
T Consensus 477 ~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~-~~~~p~lIev~v 529 (539)
T TIGR02418 477 QRSSGVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAM-EVEGPVVVDIPV 529 (539)
T ss_pred CCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 1235799999999999999996 8999999999997 468999999975
No 65
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.88 E-value=1.8e-22 Score=179.38 Aligned_cols=117 Identities=18% Similarity=0.175 Sum_probs=100.5
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc------
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT------ 123 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~------ 123 (176)
...|+||+++|.|+|++++.+ +++||+++|||+|+| ..++|+|++++++|+++||+||++|++....
T Consensus 405 ~~~gsmG~glpaAiGa~la~p-----~r~Vv~i~GDGsf~m--~~~eL~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~ 477 (575)
T TIGR02720 405 NLFATMGVGVPGAIAAKLNYP-----DRQVFNLAGDGAFSM--TMQDLLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQ 477 (575)
T ss_pred CCcchhhchHHHHHHHHHhCC-----CCcEEEEEcccHHHh--hHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCC
Confidence 357999999999999999876 789999999999997 4567999999999999999999999975311
Q ss_pred ---ccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh-hCCCcEEEEeee
Q psy786 124 ---SLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ-KAIGCVWIQRGC 175 (176)
Q Consensus 124 ---~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~-~~~~P~lI~~~~ 175 (176)
......+||+++|++||+++.+|+ +.++|.++++++++ ..++|+|||+++
T Consensus 478 ~~~~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~p~liev~i 531 (575)
T TIGR02720 478 PLIGVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKAIKQGKPVLIDAKI 531 (575)
T ss_pred CcccccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHhhCCCCcEEEEEEe
Confidence 011235789999999999999996 89999999999973 468999999986
No 66
>PLN02573 pyruvate decarboxylase
Probab=99.88 E-value=1.3e-22 Score=180.46 Aligned_cols=119 Identities=14% Similarity=0.099 Sum_probs=101.8
Q ss_pred cccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc---
Q psy786 48 IDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS--- 124 (176)
Q Consensus 48 ~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~--- 124 (176)
....+|+||+++|.|+|++++.+ +++||+++|||+|+| ..++|+||++++||+++||+||++|++.....
T Consensus 423 ~~~~~gsmG~glpaaiGa~lA~p-----~r~vv~i~GDG~f~m--~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~ 495 (578)
T PLN02573 423 FQMQYGSIGWSVGATLGYAQAAP-----DKRVIACIGDGSFQV--TAQDVSTMIRCGQKSIIFLINNGGYTIEVEIHDGP 495 (578)
T ss_pred eecchhhhhhhhhHHHHHHHhCC-----CCceEEEEeccHHHh--HHHHHHHHHHcCCCCEEEEEeCCceeEEEeecccC
Confidence 34567999999999999999986 789999999999996 45679999999999999999999999764322
Q ss_pred -cccccHHHHHHHhhcC-----ceEEEecCCCHHHHHHHHHHHHh-hCCCcEEEEeee
Q psy786 125 -LQHQTEVYRKRLDAFG-----FNAVVVDGHDVEHLVKVSSFKLQ-KAIGCVWIQRGC 175 (176)
Q Consensus 125 -~~~~~~~~~~~a~a~G-----~~~~~vdG~d~~~l~~al~~a~~-~~~~P~lI~~~~ 175 (176)
.....+||.++|++|| +++.+|+ +++||.+++++|++ ..++|+|||+++
T Consensus 496 ~~~~~~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~~~~~p~lieV~v 551 (578)
T PLN02573 496 YNVIKNWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGEKKDCLCFIEVIV 551 (578)
T ss_pred ccccCCCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhhCCCCcEEEEEEc
Confidence 1224579999999995 8899997 89999999999974 368999999986
No 67
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.88 E-value=1.4e-22 Score=180.00 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=100.4
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----- 124 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----- 124 (176)
.+.|+||+++|.|+|++++.+ +++|||++|||+|+| ..++|.||++++||+++||+||++|++....+
T Consensus 405 ~~~G~mG~~lpaAiGa~la~p-----~r~vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~ 477 (574)
T PRK09124 405 FNHGSMANAMPQALGAQAAHP-----GRQVVALSGDGGFSM--LMGDFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGY 477 (574)
T ss_pred CCcccccchHHHHHHHHHhCC-----CCeEEEEecCcHHhc--cHHHHHHHHHhCCCeEEEEEeCCccccHHHHHHhcCC
Confidence 477999999999999999986 789999999999997 44679999999999999999999999853111
Q ss_pred ----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 ----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 ----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.....+||.++|++||+++++|+ ++++|.+++++|+ ..++|+|||+++
T Consensus 478 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~-~~~~p~lIev~i 529 (574)
T PRK09124 478 LTDGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAF-AHDGPALVDVVT 529 (574)
T ss_pred ccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 11234699999999999999996 8999999999997 568999999986
No 68
>PRK05858 hypothetical protein; Provisional
Probab=99.88 E-value=8.6e-23 Score=180.31 Aligned_cols=116 Identities=16% Similarity=0.040 Sum_probs=100.6
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---- 125 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---- 125 (176)
...|+||+++|.|+|++++.+ +++||+++|||+|++. .++|+||+++++|+++||+||+.|++....+.
T Consensus 404 ~~~gsmG~~lp~aiGa~la~p-----~r~vv~i~GDG~f~~~--~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~ 476 (542)
T PRK05858 404 GPFGCLGTGPGYALAARLARP-----SRQVVLLQGDGAFGFS--LMDVDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYG 476 (542)
T ss_pred CCccccccchhHHHHHHHhCC-----CCcEEEEEcCchhcCc--HHHHHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcC
Confidence 357999999999999999986 7899999999999974 46799999999999999999999997542111
Q ss_pred ------ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 ------QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 ------~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
..+.+||.++|++||.++.+|+ ++++|.+++++|+ +.++|+|||+.+
T Consensus 477 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~-~~~~p~lIev~~ 529 (542)
T PRK05858 477 YDVAADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAF-ASGVPYLVNVLT 529 (542)
T ss_pred CccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCcEEEEEEE
Confidence 1145799999999999999996 8999999999998 478999999975
No 69
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.88 E-value=1.4e-22 Score=178.81 Aligned_cols=117 Identities=16% Similarity=0.091 Sum_probs=100.9
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---- 124 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---- 124 (176)
....|+||+++|.|+|++++.+ +++|||++|||+|+| ..++|+||+++++|+++||+||++|++....+
T Consensus 400 ~~~~g~mG~glpaaiGa~la~p-----~~~vv~i~GDG~f~m--~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~ 472 (539)
T TIGR03393 400 QPLWGSIGYTLPAAFGAQTACP-----NRRVILLIGDGSAQL--TIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQ 472 (539)
T ss_pred chhhhhhhhHHHHHHHHHhcCC-----CCCeEEEEcCcHHHh--HHHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCC
Confidence 4567999999999999999876 789999999999996 55779999999999999999999999764221
Q ss_pred --cccccHHHHHHHhhcCce----EEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 --LQHQTEVYRKRLDAFGFN----AVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 --~~~~~~~~~~~a~a~G~~----~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.....+||.+++++||++ +++|+ +.++|.+++++|+ ..++|+|||+++
T Consensus 473 ~~~~~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~-~~~~p~liev~i 526 (539)
T TIGR03393 473 RYNDIALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVA-AHERLSLIEVVL 526 (539)
T ss_pred CcCcCCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHh-ccCCeEEEEEEc
Confidence 122347999999999985 78996 8999999999997 578999999986
No 70
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.88 E-value=9.1e-23 Score=181.23 Aligned_cols=117 Identities=19% Similarity=0.218 Sum_probs=100.3
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----- 124 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----- 124 (176)
.++|+||+++|.|+|++++.+ +++||+++|||+|+| ..++|+||++++||+++||+||++|++....+
T Consensus 420 ~~~gsmG~glpaAiGa~la~p-----~r~Vv~i~GDG~f~m--~~~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~ 492 (574)
T PRK06466 420 GGLGTMGFGLPAAMGVKLAFP-----DQDVACVTGEGSIQM--NIQELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYE 492 (574)
T ss_pred CCcchhhchHHHHHHHHHhCC-----CCeEEEEEcchhhhc--cHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcC
Confidence 467999999999999999976 789999999999997 44679999999999999999999999754211
Q ss_pred -----cc-cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 -----LQ-HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 -----~~-~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.. ...+||.++|++||.++.+|+ ++++|.+++++|++..++|+|||+.+
T Consensus 493 ~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~p~lIev~i 547 (574)
T PRK06466 493 GRHSHSYMESLPDFVKLAEAYGHVGIRIT--DLKDLKPKLEEAFAMKDRLVFIDIYV 547 (574)
T ss_pred CceeecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 11 124699999999999999996 89999999999985348999999976
No 71
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.88 E-value=8.4e-23 Score=181.64 Aligned_cols=118 Identities=17% Similarity=0.198 Sum_probs=100.3
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc---
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL--- 125 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~--- 125 (176)
..++|+||+++|.|+|++++.+ +++|||++|||+|+|. .++|+||++++||+++||+||++|++....+.
T Consensus 426 ~~~~g~mG~~lpaaiGa~la~p-----~~~Vv~i~GDG~f~m~--~~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~ 498 (579)
T TIGR03457 426 PMSFGNCGYAFPTIIGAKIAAP-----DRPVVAYAGDGAWGMS--MNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFY 498 (579)
T ss_pred CCccccccchHHHHHhhhhhCC-----CCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhh
Confidence 3456999999999999999976 7899999999999974 46799999999999999999999997542211
Q ss_pred -------cc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh--CCCcEEEEeee
Q psy786 126 -------QH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK--AIGCVWIQRGC 175 (176)
Q Consensus 126 -------~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~--~~~P~lI~~~~ 175 (176)
.. ..+||.++|++||.++++|+ +++||.+++++|++. .++|+|||+.+
T Consensus 499 ~~~~~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~~~~~p~lieV~v 556 (579)
T TIGR03457 499 NNRFVGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQAEGKTTVIEIVC 556 (579)
T ss_pred CCcceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhCCCCCcEEEEEEe
Confidence 11 22599999999999999996 899999999999852 57899999975
No 72
>PRK07524 hypothetical protein; Provisional
Probab=99.87 E-value=4.8e-22 Score=175.25 Aligned_cols=117 Identities=26% Similarity=0.294 Sum_probs=100.3
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc-----
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT----- 123 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~----- 123 (176)
..+.|+||+++|.|+|++++.+ +++|||++|||+|+++ .++|+||++++||+++||+||++|++....
T Consensus 403 ~~~~g~mG~~lp~aiGa~lA~p-----~~~vv~i~GDG~f~~~--~~el~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~ 475 (535)
T PRK07524 403 STGYGTLGYGLPAAIGAALGAP-----ERPVVCLVGDGGLQFT--LPELASAVEADLPLIVLLWNNDGYGEIRRYMVARD 475 (535)
T ss_pred CCCcccccchHHHHHHHHHhCC-----CCcEEEEEcchHHhhh--HHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhc
Confidence 3467999999999999999976 7899999999999964 456999999999999999999999865321
Q ss_pred ----ccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 124 ----SLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 124 ----~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
......+||.++|++||+++++|+ +++++.+++++++ ..++|+|||+.+
T Consensus 476 ~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~liev~~ 528 (535)
T PRK07524 476 IEPVGVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAF-ARPGPTLIEVDQ 528 (535)
T ss_pred CCccccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEC
Confidence 111235799999999999999996 8999999999998 468999999986
No 73
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.87 E-value=2.1e-22 Score=178.90 Aligned_cols=117 Identities=16% Similarity=0.196 Sum_probs=100.4
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---- 124 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---- 124 (176)
..++|+||+++|.|+|++++.+ +++||+++|||+|++. .++|.||++++||+++||+||++|++....+
T Consensus 418 ~~~~gsmG~~lp~aiGa~lA~p-----~~~vv~i~GDG~f~~~--~~el~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~ 490 (570)
T PRK06725 418 SGGLGTMGFGFPAAIGAQLAKE-----EELVICIAGDASFQMN--IQELQTIAENNIPVKVFIINNKFLGMVRQWQEMFY 490 (570)
T ss_pred cCCcccccchhhHHHhhHhhcC-----CCeEEEEEecchhhcc--HHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHhc
Confidence 3467999999999999999976 7899999999999864 4669999999999999999999998754211
Q ss_pred ------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 ------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 ------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.....+||.+++++||+++.+|+ +++++.+++++++ ..++|+|||+.+
T Consensus 491 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~-~~~~p~liev~i 544 (570)
T PRK06725 491 ENRLSESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAF-AHEGPVVVDFCV 544 (570)
T ss_pred CCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 12235799999999999999996 8999999999997 468999999975
No 74
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.87 E-value=3.5e-22 Score=177.11 Aligned_cols=116 Identities=17% Similarity=0.139 Sum_probs=100.0
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----- 124 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----- 124 (176)
.+.|+||+++|.|+|++++.+ +++|||++|||+|++. .++|+||+++++|+++||+||++|++....+
T Consensus 411 ~~~g~mG~glpaaiGa~la~p-----~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~ 483 (561)
T PRK06048 411 GGLGTMGYGFPAAIGAKVGKP-----DKTVIDIAGDGSFQMN--SQELATAVQNDIPVIVAILNNGYLGMVRQWQELFYD 483 (561)
T ss_pred CCccccccHHHHHHHHHHhCC-----CCcEEEEEeCchhhcc--HHHHHHHHHcCCCeEEEEEECCccHHHHHHHHHHcC
Confidence 456999999999999999876 7899999999999974 4679999999999999999999998753210
Q ss_pred -----cc-cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 -----LQ-HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 -----~~-~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.. .+.+||.++|++||+++++|+ +++||.+++++|+ ..++|+|||+.+
T Consensus 484 ~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~-~~~~p~liev~~ 537 (561)
T PRK06048 484 KRYSHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAV-ASDRPVVIDFIV 537 (561)
T ss_pred CcccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 11 135799999999999999996 8999999999998 578999999975
No 75
>KOG0225|consensus
Probab=99.87 E-value=3.9e-22 Score=162.48 Aligned_cols=124 Identities=25% Similarity=0.466 Sum_probs=110.7
Q ss_pred ccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc
Q psy786 47 FIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ 126 (176)
Q Consensus 47 ~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~ 126 (176)
.+-.+.|++|.++|.+.|+|+|.|+ ++.+..++++.|||+.++|.++|++|+|+.|+|| +||||+||.|+|.+.....
T Consensus 159 ~FyGGnGIVGAQiPLGaGia~A~kY-~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP-~IFvCENN~yGMGTs~~Ra 236 (394)
T KOG0225|consen 159 NFYGGNGIVGAQIPLGAGIAFAQKY-NREDAVCFALYGDGAANQGQVFEAFNMAALWKLP-VIFVCENNHYGMGTSAERA 236 (394)
T ss_pred cccCccceeccCCCccccHHHHHHh-ccCCceEEEEeccccccchhHHHHhhHHHHhCCC-EEEEEccCCCccCcchhhh
Confidence 3557899999999999999999998 4556789999999999999999999999999999 8899999999999988877
Q ss_pred cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhC---CCcEEEEee
Q psy786 127 HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKA---IGCVWIQRG 174 (176)
Q Consensus 127 ~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~---~~P~lI~~~ 174 (176)
...++|.++. .| +++++|||.|+-++++|.+.|.+++ ++|+++|..
T Consensus 237 sa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~ 285 (394)
T KOG0225|consen 237 SASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMD 285 (394)
T ss_pred hcChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 7778888876 34 9999999999999999999998743 689999975
No 76
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.87 E-value=4.4e-22 Score=176.07 Aligned_cols=117 Identities=18% Similarity=0.255 Sum_probs=100.0
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----- 124 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----- 124 (176)
...|+||+++|.|+|++++.+ .+++|||++|||+|++ ..++|+||++++||+++||+||++|++....+
T Consensus 393 ~~~g~mG~glpaaiGa~la~p----~~~~Vv~i~GDGsf~~--~~~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~ 466 (549)
T PRK06457 393 AWLGSMGIGVPGSVGASFAVE----NKRQVISFVGDGGFTM--TMMELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGY 466 (549)
T ss_pred CCcchhhhhHHHHHHHHhcCC----CCCeEEEEEcccHHhh--hHHHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcC
Confidence 467999999999999999874 1579999999999996 45679999999999999999999999753211
Q ss_pred ----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 ----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 ----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.....+||.++|++||+++.+|+ ++++|.+++++++ ..++|+|||+++
T Consensus 467 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~lIeV~i 518 (549)
T PRK06457 467 PEWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFL-NTKGPAVLDAIV 518 (549)
T ss_pred CcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 11234689999999999999996 8999999999997 468999999975
No 77
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.87 E-value=6.3e-22 Score=158.33 Aligned_cols=120 Identities=14% Similarity=0.138 Sum_probs=96.6
Q ss_pred CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccC-CchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESA-EGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---- 125 (176)
Q Consensus 51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~-~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---- 125 (176)
..|+||+++|.|+|++++......++++|||++|||+|+ +| .+++.++.++++|++++|+||+.|++...+..
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g--~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~ 139 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG--FGALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATP 139 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc--HHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCc
Confidence 449999999999999998110012378999999999986 54 34689999999999999999999997642221
Q ss_pred ------------ccccHHHHHHHhhcCceEEE---ecCCCHHHHHHHHHHHHhhCCCcEEEEee
Q psy786 126 ------------QHQTEVYRKRLDAFGFNAVV---VDGHDVEHLVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 126 ------------~~~~~~~~~~a~a~G~~~~~---vdG~d~~~l~~al~~a~~~~~~P~lI~~~ 174 (176)
....+||+++|++||+++++ |+ +++++.+++++|+++.++|+||+++
T Consensus 140 ~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~--~~~~l~~al~~al~~~~GP~lI~v~ 201 (237)
T cd02018 140 LGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPA--LKKHFLKVVKEAISRTDGPTFIHAY 201 (237)
T ss_pred CCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccC--CHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 12346999999999999985 64 8999999999998437899999998
No 78
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.87 E-value=4e-22 Score=177.01 Aligned_cols=116 Identities=24% Similarity=0.195 Sum_probs=100.4
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---- 125 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---- 125 (176)
.++|+||+++|.|+|++++.+ +++||+++|||+|+|. .++|+||++++||+++||+||++|++....+.
T Consensus 418 ~~~g~mG~glpaAiGa~la~p-----~~~vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~ 490 (572)
T PRK06456 418 SGMGTMGFGLPAAMGAKLARP-----DKVVVDLDGDGSFLMT--GTNLATAVDEHIPVISVIFDNRTLGLVRQVQDLFFG 490 (572)
T ss_pred CCcccccchhHHHHHHHHhCC-----CCeEEEEEccchHhcc--hHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhhC
Confidence 467999999999999999986 7899999999999974 46799999999999999999999998642211
Q ss_pred ------cc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 ------QH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 ------~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.. +.+||.++|++||+++++|+ +++||.+++++|+ ..++|+|||+++
T Consensus 491 ~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~-~~~~p~lIev~v 544 (572)
T PRK06456 491 KRIVGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAI-KEDIPAVIRVPV 544 (572)
T ss_pred CCcccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 11 34799999999999999996 8999999999997 568999999975
No 79
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.87 E-value=3.4e-22 Score=178.14 Aligned_cols=117 Identities=17% Similarity=0.108 Sum_probs=99.7
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---- 125 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---- 125 (176)
.++|+||+++|.|+|++++.+ +++|||++|||+|++ ..++|+||++++||+++||+||++|++....+.
T Consensus 416 ~~~G~mG~glpaAiGa~la~p-----~r~Vv~i~GDG~f~m--~~~eL~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~ 488 (591)
T PRK11269 416 GQAGPLGWTIPAALGVRAADP-----DRNVVALSGDYDFQF--LIEELAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDM 488 (591)
T ss_pred CccccccchhhhHHhhhhhCC-----CCcEEEEEccchhhc--CHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHhcc
Confidence 467999999999999999976 789999999999997 346699999999999999999999987532110
Q ss_pred ------c----------cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEeee
Q psy786 126 ------Q----------HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQRGC 175 (176)
Q Consensus 126 ------~----------~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~~ 175 (176)
. .+.+||+++|++||+++.+|+ +++||.+++++|++ ..++|+|||+++
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v 555 (591)
T PRK11269 489 DYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVIL 555 (591)
T ss_pred CccceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEe
Confidence 0 023789999999999999996 99999999999984 368999999986
No 80
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.87 E-value=9.3e-22 Score=174.99 Aligned_cols=117 Identities=21% Similarity=0.243 Sum_probs=101.0
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----- 124 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----- 124 (176)
...|+||+++|.|+|++++.+ +++|||++|||+|++ ..++|+||+++++|+++||+||++|++....+
T Consensus 405 ~~~gsmG~~~paAiGa~la~p-----~~~vv~i~GDGsf~~--~~~el~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~ 477 (578)
T PRK06546 405 FRHGSMANALPHAIGAQLADP-----GRQVISMSGDGGLSM--LLGELLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGL 477 (578)
T ss_pred CCcccccchhHHHHHHHHhCC-----CCcEEEEEcCchHhh--hHHHHHHHHHhCCCeEEEEEECCccccHHHHHHhcCC
Confidence 467999999999999999986 789999999999997 34569999999999999999999999753110
Q ss_pred ----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeeeC
Q psy786 125 ----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGCC 176 (176)
Q Consensus 125 ----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~~ 176 (176)
.....+||.+++++||+++.+|+ ++++|.+++++++ ..++|+|||++++
T Consensus 478 ~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~-~~~gp~lIev~~~ 530 (578)
T PRK06546 478 PDFGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAF-AHPGPALVDVVTD 530 (578)
T ss_pred CcccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEeC
Confidence 11235799999999999999997 8999999999998 4689999999874
No 81
>PRK08322 acetolactate synthase; Reviewed
Probab=99.87 E-value=8.4e-22 Score=174.02 Aligned_cols=117 Identities=20% Similarity=0.228 Sum_probs=100.5
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---- 124 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---- 124 (176)
..+.|+||+++|.|+|++++.+ +++||+++|||+|++. .++|+||+++++|+++||+||++|++....+
T Consensus 402 ~~~~g~mG~~lpaaiGa~la~p-----~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~ 474 (547)
T PRK08322 402 DNALATMGAGLPSAIAAKLVHP-----DRKVLAVCGDGGFMMN--SQELETAVRLGLPLVVLILNDNAYGMIRWKQENMG 474 (547)
T ss_pred CCCcccccchhHHHHHHHHhCC-----CCcEEEEEcchhHhcc--HHHHHHHHHhCCCeEEEEEeCCCcchHHHHHHhhc
Confidence 3467999999999999999976 7899999999999974 4679999999999999999999999764211
Q ss_pred -----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 -----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 -----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.....+||.++|++||+++++|+ ++++|.+++++++ ..++|+|||+.+
T Consensus 475 ~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~-~~~~p~lIev~v 527 (547)
T PRK08322 475 FEDFGLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEAL-AQPGVHVIDCPV 527 (547)
T ss_pred CCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 11234799999999999999996 8999999999997 468999999875
No 82
>PRK08611 pyruvate oxidase; Provisional
Probab=99.87 E-value=5.9e-22 Score=176.16 Aligned_cols=117 Identities=21% Similarity=0.167 Sum_probs=100.5
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---- 124 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---- 124 (176)
..+.|+||+++|.|+|++++.+ +++||+++|||+|+| ..++|.||+++++|+++||+||++|++....+
T Consensus 404 ~~~~g~mG~glpaaiGa~la~p-----~~~Vv~i~GDGsf~m--~~~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~ 476 (576)
T PRK08611 404 SSWLGTMGCGLPGAIAAKIAFP-----DRQAIAICGDGGFSM--VMQDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAG 476 (576)
T ss_pred CCCchhhhhhHHHHHHHHHhCC-----CCcEEEEEcccHHhh--hHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhc
Confidence 3457999999999999999876 789999999999997 45679999999999999999999999753111
Q ss_pred -----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 -----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 -----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.....+||.++|++||+++++|+ ++++|.+++++++ ..++|+|||+++
T Consensus 477 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~-~~~~p~lIeV~v 529 (576)
T PRK08611 477 ELEYAIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEAL-AQDKPVIIDVYV 529 (576)
T ss_pred CCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 11235799999999999999996 8999999999997 568999999975
No 83
>PLN02470 acetolactate synthase
Probab=99.87 E-value=4.6e-22 Score=177.10 Aligned_cols=117 Identities=18% Similarity=0.112 Sum_probs=99.5
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---- 124 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---- 124 (176)
..+.|+||+++|.|+|++++.+ +++|||++|||+|+|. .++|+||++++||+++||+||++|++....+
T Consensus 422 ~~~~g~mG~glpaaiGa~la~p-----~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~ 494 (585)
T PLN02470 422 SGGLGAMGFGLPAAIGAAAANP-----DAIVVDIDGDGSFIMN--IQELATIHVENLPVKIMVLNNQHLGMVVQWEDRFY 494 (585)
T ss_pred CCccccccchHHHHHHHHHhCC-----CCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHHh
Confidence 3467999999999999999986 7899999999999974 4679999999999999999999998653210
Q ss_pred ------cccc--------cHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 ------LQHQ--------TEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 ------~~~~--------~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.... .+||.++|++||+++++|+ +++||.+++++|++ .++|.|||+.+
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~~~p~lieV~i 556 (585)
T PLN02470 495 KANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLD-TPGPYLLDVIV 556 (585)
T ss_pred CCceeeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh-CCCCEEEEEEe
Confidence 0111 2699999999999999996 89999999999974 78999999975
No 84
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.87 E-value=4.8e-22 Score=177.96 Aligned_cols=116 Identities=21% Similarity=0.269 Sum_probs=100.0
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---- 125 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---- 125 (176)
..+|+||+++|.|+|++++.+ +++||+++|||+|+| ..++|+||++++||+++||+||+.|++....+.
T Consensus 431 ~~~g~mG~glpaAiGA~lA~p-----~r~Vv~i~GDG~f~m--~~~eL~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~ 503 (616)
T PRK07418 431 AGLGTMGFGMPAAMGVKVALP-----DEEVICIAGDASFLM--NIQELGTLAQYGINVKTVIINNGWQGMVRQWQESFYG 503 (616)
T ss_pred CCccccccHHHHHHHHHHhCC-----CCcEEEEEcchHhhh--hHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcC
Confidence 467999999999999999976 789999999999997 456799999999999999999999997542111
Q ss_pred ------cc--ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 ------QH--QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 ------~~--~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.. +.+||.++|++||+++++|+ +++||.+++++|+ ..++|+|||+.+
T Consensus 504 ~~~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~-~~~~p~lIeV~i 558 (616)
T PRK07418 504 ERYSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEAL-AHDGPVLIDVHV 558 (616)
T ss_pred CCceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 11 24789999999999999996 8999999999997 478999999975
No 85
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.87 E-value=1.2e-21 Score=156.52 Aligned_cols=117 Identities=18% Similarity=0.126 Sum_probs=96.0
Q ss_pred CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCcc-CCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGES-AEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---- 125 (176)
Q Consensus 51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---- 125 (176)
..++||+++|.|+|++++.+ +++|||++|||++ ++ ..++|.+|+++++|++++|+||+.|++.+.+..
T Consensus 60 ~~gsmG~GlpaAiGa~~a~p-----~r~VV~i~GDG~~~~m--~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~ 132 (235)
T cd03376 60 NAAAVASGIEAALKALGRGK-----DITVVAFAGDGGTADI--GFQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTP 132 (235)
T ss_pred CHHHHHHHHHHHHHHhccCC-----CCeEEEEEcCchHHhh--HHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCC
Confidence 45899999999999988765 7899999999995 65 456799999999999999999999996432111
Q ss_pred -----------------ccccHHHHHHHhhcCceEEE-ecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 -----------------QHQTEVYRKRLDAFGFNAVV-VDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 -----------------~~~~~~~~~~a~a~G~~~~~-vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
....+|+.++|+++|++++. ++..+++++.+++++|+ ..++|+|||+.+
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~-~~~gP~lIev~~ 199 (235)
T cd03376 133 YGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKAL-SIEGPAYIHILS 199 (235)
T ss_pred CCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHH-hCCCCEEEEEEC
Confidence 11346999999999999873 34459999999999998 468999999875
No 86
>PRK07064 hypothetical protein; Provisional
Probab=99.87 E-value=5e-22 Score=175.33 Aligned_cols=116 Identities=22% Similarity=0.240 Sum_probs=99.4
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----- 124 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----- 124 (176)
...|+||+++|.|+|++++.+ +++||+++|||+|+| ..++|+||++++||+++||+||++|++....+
T Consensus 402 ~~~g~mG~~lpaAiGa~lA~p-----~~~vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~~ 474 (544)
T PRK07064 402 ALGGGIGQGLAMAIGAALAGP-----GRKTVGLVGDGGLML--NLGELATAVQENANMVIVLMNDGGYGVIRNIQDAQYG 474 (544)
T ss_pred cCCCccccccchhhhhhhhCc-----CCcEEEEEcchHhhh--hHHHHHHHHHhCCCeEEEEEeCChhHHHHHHHHHhcC
Confidence 345899999999999999976 789999999999997 44679999999999999999999999754211
Q ss_pred -----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 -----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 -----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.....+||.++|++||+++.+|+ +++||.+++++|+ ..++|+|||+++
T Consensus 475 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~-~~~~p~lIeV~~ 527 (544)
T PRK07064 475 GRRYYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREAL-AKEGPVLVEVDM 527 (544)
T ss_pred CccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-cCCCCEEEEEEc
Confidence 11235799999999999999996 8999999999998 468999999974
No 87
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.87 E-value=6.2e-22 Score=175.84 Aligned_cols=117 Identities=20% Similarity=0.321 Sum_probs=99.6
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----- 124 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----- 124 (176)
.++|+||+++|.|+|++++.+ +++|||++|||+|++. .++|+||+++++|+++||+||++|++....+
T Consensus 418 ~~~g~mG~~lp~aiGa~la~p-----~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~ 490 (574)
T PRK06882 418 GGAGTMGFGLPAAIGVKFAHP-----EATVVCVTGDGSIQMN--IQELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYS 490 (574)
T ss_pred CCcccccchhHHHHHHHhhcC-----CCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcC
Confidence 467999999999999999976 6899999999999974 4779999999999999999999998643211
Q ss_pred -----cc-cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 -----LQ-HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 -----~~-~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.. ...+||.+++++||+++++|+ +.++|.+++++|++..++|+|||+.+
T Consensus 491 ~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~~~~p~liev~i 545 (574)
T PRK06882 491 GRHSQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSIKDKLVFVDVNV 545 (574)
T ss_pred CcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 11 124689999999999999996 89999999999985457899999976
No 88
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.87 E-value=3.1e-22 Score=179.03 Aligned_cols=118 Identities=15% Similarity=0.108 Sum_probs=100.1
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---- 124 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---- 124 (176)
..++|+||+++|.|+|++++.+ +++|+|++|||+|++ ..++|+||++++||+++||+||++|++....+
T Consensus 443 ~~~~G~mG~glpaaiGa~la~p-----~~~Vv~i~GDG~f~m--~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~ 515 (612)
T PRK07789 443 SGGLGTMGYAVPAAMGAKVGRP-----DKEVWAIDGDGCFQM--TNQELATCAIEGIPIKVALINNGNLGMVRQWQTLFY 515 (612)
T ss_pred CCCcccccchhhhHHhhhccCC-----CCcEEEEEcchhhhc--cHHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhh
Confidence 3466999999999999999976 789999999999997 45679999999999999999999999754211
Q ss_pred ------ccc-----ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 ------LQH-----QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 ------~~~-----~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
... +.+||.++|++||+++++|+ +++||.+++++|++..++|+|||+.+
T Consensus 516 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~p~lIev~i 575 (612)
T PRK07789 516 EERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAINDRPVVIDFVV 575 (612)
T ss_pred CCCcceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 011 12689999999999999996 89999999999985347999999976
No 89
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.86 E-value=7.2e-22 Score=175.15 Aligned_cols=117 Identities=22% Similarity=0.219 Sum_probs=99.7
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---- 124 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---- 124 (176)
..++|+||+++|.|+|++++.+ +++|+|++|||+|+|. .++|+||++++||+++||+||++|++....+
T Consensus 410 ~~~~g~mG~~l~~aiGa~la~p-----~~~vv~i~GDG~f~m~--~~eL~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~ 482 (563)
T PRK08527 410 SGGLGTMGYGLPAALGAKLAVP-----DKVVINFTGDGSILMN--IQELMTAVEYKIPVINIILNNNFLGMVRQWQTFFY 482 (563)
T ss_pred CCCcccccchHHHHHHHHHhCC-----CCcEEEEecCchhccc--HHHHHHHHHhCCCeEEEEEECCcchhHHHHHHhhc
Confidence 3467999999999999999986 6789999999999974 4569999999999999999999999764221
Q ss_pred ------ccc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 ------LQH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 ------~~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
... ..+||.+++++||+++++|+ +++++.+++++|++ .++|+|||+.+
T Consensus 483 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~-~~~p~lieV~v 537 (563)
T PRK08527 483 EERYSETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEALE-SDKVALIDVKI 537 (563)
T ss_pred CCceeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh-CCCCEEEEEEE
Confidence 011 24699999999999999996 89999999999974 68999999875
No 90
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.86 E-value=9.1e-22 Score=175.60 Aligned_cols=118 Identities=18% Similarity=0.185 Sum_probs=100.0
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhc-----CCCcEEEEEecCCCccccCc
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYY-----KLDNLCVIFDINRLGQSEPT 123 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~-----~lp~liiV~~nn~~~~~~~~ 123 (176)
...+|+||+++|.|+|++++.+ +++|||++|||+|+|.. .++|.|++++ +||+++||+||++|++....
T Consensus 411 s~~~g~mG~glpaaiGa~la~p-----~~~Vv~i~GDG~f~m~~-~~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~ 484 (597)
T PRK08273 411 SGTLATMGPAVPYAIAAKFAHP-----DRPVIALVGDGAMQMNG-MAELITVAKYWRQWSDPRLIVLVLNNRDLNQVTWE 484 (597)
T ss_pred cCccccccchHHHHHHHHHhCC-----CCcEEEEEcchhHhccc-hHHHHHHHHHhhcccCCCEEEEEEeCCcchHHHHH
Confidence 3467999999999999999986 78999999999999741 3669999999 89999999999999865321
Q ss_pred c------------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 124 S------------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 124 ~------------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
+ ...+.+||.++|++||+++++|+ +.+||.+++++|+ ..++|+|||+.+
T Consensus 485 q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~-~~~~p~lIeV~~ 545 (597)
T PRK08273 485 QRVMEGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEAL-AADRPVVLEVKT 545 (597)
T ss_pred HHHhcCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 1 11234789999999999999996 8999999999997 478999999975
No 91
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.86 E-value=5.1e-22 Score=176.39 Aligned_cols=117 Identities=22% Similarity=0.245 Sum_probs=100.0
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---- 124 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---- 124 (176)
..+.|+||+++|.|+|++++.+ +++||+++|||+|++. .++|+||+++++|+++||+||++|++....+
T Consensus 420 ~~~~g~mG~glpaAiGaala~p-----~~~vv~i~GDGsf~m~--~~eL~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~ 492 (571)
T PRK07710 420 SGGLGTMGFGLPAAIGAQLAKP-----DETVVAIVGDGGFQMT--LQELSVIKELSLPVKVVILNNEALGMVRQWQEEFY 492 (571)
T ss_pred CCCcccccchHHHHHHHHHhCC-----CCcEEEEEcchHHhhh--HHHHHHHHHhCCCeEEEEEECchHHHHHHHHHHHh
Confidence 3466999999999999999976 7899999999999973 4569999999999999999999999754211
Q ss_pred -------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 -------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 -------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.....+||.++|++||+++.+|+ ++++|.+++++|+ ..++|+|||+.+
T Consensus 493 ~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~lieV~v 547 (571)
T PRK07710 493 NQRYSHSLLSCQPDFVKLAEAYGIKGVRID--DELEAKEQLQHAI-ELQEPVVIDCRV 547 (571)
T ss_pred CCcceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 01134799999999999999996 8999999999997 468999999976
No 92
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.86 E-value=1e-21 Score=174.88 Aligned_cols=117 Identities=20% Similarity=0.249 Sum_probs=100.1
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc---
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL--- 125 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~--- 125 (176)
...+|+||+++|.|+|++++.+ +++||+++|||+|+| ..++|+||+++++|+++||+||++|++....+.
T Consensus 426 ~~~~g~mG~glpaaiGaala~p-----~~~vv~i~GDG~f~m--~~~eL~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~ 498 (585)
T CHL00099 426 SAGLGTMGYGLPAAIGAQIAHP-----NELVICISGDASFQM--NLQELGTIAQYNLPIKIIIINNKWQGMVRQWQQAFY 498 (585)
T ss_pred CccccchhhhHHHHHHHHHhCC-----CCeEEEEEcchhhhh--hHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhc
Confidence 3467999999999999999976 789999999999996 456799999999999999999999987532110
Q ss_pred ---------ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 ---------QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 ---------~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
....+||.+++++||+++++|+ ++++|.+++++|++ .++|.|||+.+
T Consensus 499 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~-~~~p~liev~v 554 (585)
T CHL00099 499 GERYSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEALD-YDGPVLIDCQV 554 (585)
T ss_pred CCCcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh-CCCCEEEEEEE
Confidence 1124689999999999999996 89999999999974 78999999975
No 93
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.86 E-value=6.7e-22 Score=175.50 Aligned_cols=116 Identities=19% Similarity=0.231 Sum_probs=98.7
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---- 124 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---- 124 (176)
..++|+||+++|.|+|++++.+ +++||+++|||+|+| ..++|+||+++++|+++||+||++|++....+
T Consensus 414 ~~~~g~mG~glpaaiGa~lA~p-----~~~Vv~i~GDG~f~m--~~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~ 486 (566)
T PRK07282 414 SGGLGTMGFGIPAAIGAKIANP-----DKEVILFVGDGGFQM--TNQELAILNIYKVPIKVVMLNNHSLGMVRQWQESFY 486 (566)
T ss_pred CCccccccchhhHhheeheecC-----CCcEEEEEcchhhhc--cHHHHHHHHHhCCCeEEEEEeCCCchHHHHHHHHHh
Confidence 3467999999999999999976 789999999999997 44679999999999999999999999754211
Q ss_pred ------ccc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 ------LQH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 ------~~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
..+ ..+||+++|++||+++.+|+ +++||.++++ ++ .+++|+|||+++
T Consensus 487 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~-~~~~p~lIeV~v 540 (566)
T PRK07282 487 EGRTSESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VI-TEDVPMLIEVDI 540 (566)
T ss_pred CCCcccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hh-cCCCCEEEEEEe
Confidence 112 35799999999999999996 8999999997 44 468999999975
No 94
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.86 E-value=1.4e-21 Score=172.81 Aligned_cols=117 Identities=20% Similarity=0.251 Sum_probs=100.4
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---- 124 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---- 124 (176)
..+.|+||+++|.|+|++++.+ +++|++++|||+|+|. .++|+||+++++|++++|+||++|++....+
T Consensus 397 ~~~~g~mG~glpaAiGa~la~p-----~~~vv~i~GDG~f~~~--~~eL~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~ 469 (548)
T PRK08978 397 SSGLGTMGFGLPAAIGAQVARP-----DDTVICVSGDGSFMMN--VQELGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFF 469 (548)
T ss_pred CCchhhhhchHHHHHHHHHhCC-----CCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHh
Confidence 3466999999999999999976 7899999999999974 4679999999999999999999999754211
Q ss_pred ------ccc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 ------LQH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 ------~~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
... ..+||.+++++||+++.+|+ +++||.+++++++ ..++|.|||+++
T Consensus 470 ~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~lIeV~i 524 (548)
T PRK08978 470 DERYSETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLL-NSEGPYLLHVSI 524 (548)
T ss_pred CCcceecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 111 34799999999999999996 8999999999997 478999999986
No 95
>PRK08617 acetolactate synthase; Reviewed
Probab=99.86 E-value=1e-21 Score=173.78 Aligned_cols=116 Identities=22% Similarity=0.181 Sum_probs=100.0
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---- 125 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---- 125 (176)
.+.|+||+++|.|+|++++.+ +++|+|++|||+|+| ..++|+||+++++|+++||+||+.|++....+.
T Consensus 411 ~~~g~mG~~lpaaiGa~la~p-----~~~vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~ 483 (552)
T PRK08617 411 NGMQTLGVALPWAIAAALVRP-----GKKVVSVSGDGGFLF--SAMELETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYG 483 (552)
T ss_pred CccccccccccHHHhhHhhcC-----CCcEEEEEechHHhh--hHHHHHHHHHhCCCeEEEEEECCccchHHHHHHhhcC
Confidence 467899999999999999876 789999999999996 456799999999999999999999997642111
Q ss_pred -----ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 -----QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 -----~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
....+||.++|++||+++.+|+ ++++|.+++++|+ ..++|+|||+.+
T Consensus 484 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~-~~~~p~liev~~ 535 (552)
T PRK08617 484 RSSGVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREAL-ATDGPVVIDIPV 535 (552)
T ss_pred CcccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH-hCCCcEEEEEEe
Confidence 1235789999999999999996 8999999999998 568999999864
No 96
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.86 E-value=4.1e-21 Score=161.81 Aligned_cols=115 Identities=21% Similarity=0.229 Sum_probs=97.7
Q ss_pred CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCC-CcEEEEEecCCCccccCccccccc
Q psy786 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKL-DNLCVIFDINRLGQSEPTSLQHQT 129 (176)
Q Consensus 51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~l-p~liiV~~nn~~~~~~~~~~~~~~ 129 (176)
..|+||+++|.|+|++++.+ +++|||+.|||+|+| ..++|.+++++++ |+++||+||+.|+..+.+......
T Consensus 219 ~~GsMG~a~p~AlG~ala~p-----~r~Vv~i~GDGsflm--~~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~ 291 (361)
T TIGR03297 219 TVGSMGHASQIALGLALARP-----DQRVVCLDGDGAALM--HMGGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQH 291 (361)
T ss_pred eechhhhHHHHHHHHHHHCC-----CCCEEEEEChHHHHH--HHHHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCC
Confidence 35999999999999999976 789999999999996 4567999999996 777888888888876544433345
Q ss_pred HHHHHHHhhcCc-eEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 130 EVYRKRLDAFGF-NAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 130 ~~~~~~a~a~G~-~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.||.++|++||+ .+++|+ +.++|.+++++++ +.++|+|||+++
T Consensus 292 ~d~~~iA~a~G~~~~~~v~--~~~eL~~al~~a~-~~~gp~lIeV~v 335 (361)
T TIGR03297 292 LDFAQIAKACGYAKVYEVS--TLEELETALTAAS-SANGPRLIEVKV 335 (361)
T ss_pred CCHHHHHHHCCCceEEEeC--CHHHHHHHHHHHH-hCCCcEEEEEEe
Confidence 799999999997 577885 8999999999996 568999999986
No 97
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.86 E-value=1.8e-21 Score=171.74 Aligned_cols=116 Identities=15% Similarity=0.083 Sum_probs=98.8
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---- 125 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---- 125 (176)
..+|+||+++|.|+|++++.+ +++|+++|||+|+| ..++|+||+++++|+++||+||++|++....+.
T Consensus 400 ~~~g~mG~glpaaiGa~lA~~------~r~v~i~GDG~f~m--~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~ 471 (535)
T TIGR03394 400 GYYAGMGFGVPAGIGAQCTSG------KRILTLVGDGAFQM--TGWELGNCRRLGIDPIVILFNNASWEMLRVFQPESAF 471 (535)
T ss_pred CccchhhhHHHHHHHHHhCCC------CCeEEEEeChHHHh--HHHHHHHHHHcCCCcEEEEEECCccceeehhccCCCc
Confidence 467999999999999999964 45688999999996 556799999999999999999999998653321
Q ss_pred -ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 -QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 -~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
....+||.+++++||.++++|+ +++||.+++++|++..++|.|||+++
T Consensus 472 ~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~p~lIev~i 520 (535)
T TIGR03394 472 NDLDDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFATRGRFQLIEAML 520 (535)
T ss_pred ccCCCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 2235799999999999999996 89999999999985445689999975
No 98
>PRK08266 hypothetical protein; Provisional
Probab=99.86 E-value=1.2e-21 Score=172.96 Aligned_cols=115 Identities=24% Similarity=0.273 Sum_probs=99.0
Q ss_pred CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc------
Q psy786 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS------ 124 (176)
Q Consensus 51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~------ 124 (176)
..|+||+++|.|+|++++.+ +++|||++|||+|+++ .++|+||++++||++++|+||++|++....+
T Consensus 400 ~~GsmG~~lp~aiGa~la~p-----~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~ 472 (542)
T PRK08266 400 YQGTLGYGFPTALGAKVANP-----DRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGG 472 (542)
T ss_pred CCcccccHHHHHHHHHHhCC-----CCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCC
Confidence 56999999999999999876 7899999999999975 5779999999999999999999998753211
Q ss_pred ----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 ----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 ----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.....+||.+++++||+++++|+ +.+++.+++++++ ..++|+|||+.+
T Consensus 473 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~liev~i 524 (542)
T PRK08266 473 RVVASDLVNPDFVKLAESFGVAAFRVD--SPEELRAALEAAL-AHGGPVLIEVPV 524 (542)
T ss_pred CcccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH-hCCCcEEEEEEe
Confidence 11124689999999999999997 8999999999997 467999999976
No 99
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.86 E-value=2.6e-21 Score=171.30 Aligned_cols=115 Identities=19% Similarity=0.126 Sum_probs=96.1
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccC-------
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEP------- 122 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~------- 122 (176)
..+|+||+++|.|+|++++. +++||+++|||+|+|. .++|+||+++++|+++||+||++|....+
T Consensus 414 ~~~gsmG~~lpaaiGaala~------~~~vv~i~GDGsf~m~--~~EL~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~ 485 (554)
T TIGR03254 414 GTWGVMGIGMGYAIAAAVET------GKPVVALEGDSAFGFS--GMEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGAD 485 (554)
T ss_pred CCCCcCCchHHHHHHHHhcC------CCcEEEEEcCchhccc--HHHHHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCC
Confidence 46799999999999999973 5789999999999974 45699999999999999999998732210
Q ss_pred -ccccc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 123 -TSLQH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 123 -~~~~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
..... +.+||.+++++||+++++|+ ++++|.+++++|+ ..++|+|||+++
T Consensus 486 ~~~~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~lIev~i 537 (554)
T TIGR03254 486 PAPTVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEAL-ASGKPTLINAVI 537 (554)
T ss_pred CCccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEE
Confidence 01111 35799999999999999996 8999999999997 468999999975
No 100
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.86 E-value=1.3e-21 Score=173.56 Aligned_cols=116 Identities=18% Similarity=0.257 Sum_probs=99.7
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---- 125 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---- 125 (176)
.++|+||+++|.|+|++++.+ +++||+++|||+|++. .++|+||+++++|+++||+||++|++....+.
T Consensus 416 ~~~g~mG~~lpaaiGa~la~~-----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~ 488 (564)
T PRK08155 416 GGLGTMGFGLPAAIGAALANP-----ERKVLCFSGDGSLMMN--IQEMATAAENQLDVKIILMNNEALGLVHQQQSLFYG 488 (564)
T ss_pred CCcccccchhHHHHHHHHhCC-----CCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCcccccHHHHHHhcC
Confidence 467999999999999999986 7899999999999974 45699999999999999999999998643211
Q ss_pred ------cc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 ------QH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 ------~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.. ..+||+++|++||+++++|+ +++|+.+++++|+ ..++|+|||+.+
T Consensus 489 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~lIeV~~ 542 (564)
T PRK08155 489 QRVFAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAI-NRPGPALIHVRI 542 (564)
T ss_pred CCeeeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 11 34789999999999999996 8999999999998 468999999975
No 101
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.86 E-value=1.6e-21 Score=173.25 Aligned_cols=121 Identities=23% Similarity=0.179 Sum_probs=101.4
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc-----
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT----- 123 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~----- 123 (176)
..++|+||+++|.|+|++++.+ +++|||++|||+|+++...++++||+++++|+++||+||++|++....
T Consensus 426 ~~~~gsmG~~lp~aiGa~la~p-----~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~ 500 (569)
T PRK08327 426 DGSAGGLGWALGAALGAKLATP-----DRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVY 500 (569)
T ss_pred CCCCCCCCcchHHHHHHhhcCC-----CCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhC
Confidence 3467999999999999999875 789999999999998754446999999999999999999999975321
Q ss_pred ------------cccc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEeeeC
Q psy786 124 ------------SLQH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQRGCC 176 (176)
Q Consensus 124 ------------~~~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~~~~ 176 (176)
.... +.+||.+++++||+++++|+ +++++.+++++|++. .++|+|||+.+.
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v~ 567 (569)
T PRK08327 501 PEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIVD 567 (569)
T ss_pred cccccccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 0111 45799999999999999997 999999999999853 168999999863
No 102
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.86 E-value=9.9e-22 Score=175.07 Aligned_cols=117 Identities=18% Similarity=0.177 Sum_probs=99.4
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---- 125 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---- 125 (176)
.++|+||+++|.|+|++++.+ +++||+++|||+|+++ .++|.||+++++|+++||+||++|++....+.
T Consensus 432 ~~~g~mG~glp~aiGa~la~p-----~r~vv~i~GDG~f~~~--~~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~ 504 (588)
T PRK07525 432 GSFGNCGYAFPAIIGAKIACP-----DRPVVGFAGDGAWGIS--MNEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYN 504 (588)
T ss_pred ccccccccHHHHHHHHHHhCC-----CCcEEEEEcCchHhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhC
Confidence 467999999999999999986 7899999999999975 45699999999999999999999987532111
Q ss_pred ------cc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh--CCCcEEEEeee
Q psy786 126 ------QH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK--AIGCVWIQRGC 175 (176)
Q Consensus 126 ------~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~--~~~P~lI~~~~ 175 (176)
.. ..+||.+++++||+++++|+ ++++|.++++++++. .++|+|||+.+
T Consensus 505 ~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~p~lIev~~ 561 (588)
T PRK07525 505 NRFVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQNEGKTTVIEIMC 561 (588)
T ss_pred CCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcCCCCCcEEEEEEe
Confidence 11 23699999999999999996 899999999999864 35899999875
No 103
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.85 E-value=2.6e-21 Score=157.63 Aligned_cols=115 Identities=16% Similarity=0.104 Sum_probs=95.5
Q ss_pred CcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc-----
Q psy786 52 TGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ----- 126 (176)
Q Consensus 52 ~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~----- 126 (176)
.++||+++|.|+|+++|.+ +++||+++|||+|++ +...++.+|+++++|+++||+||+.|++.+.++..
T Consensus 67 ~~~~G~alPaAiGaklA~P-----dr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g 140 (277)
T PRK09628 67 HTTHGRAVAYATGIKLANP-----DKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKG 140 (277)
T ss_pred eeccccHHHHHHHHHHHCC-----CCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCC
Confidence 3589999999999999987 789999999999964 23455888999999999999999999986533210
Q ss_pred -----------cccHHHHHHHhhcCceEE---EecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 127 -----------HQTEVYRKRLDAFGFNAV---VVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 127 -----------~~~~~~~~~a~a~G~~~~---~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.+..|+.++|+++|++++ +|+ +++++.+++++|+ ..++|+|||+.+
T Consensus 141 ~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~--~~~el~~al~~Al-~~~Gp~lIeV~~ 200 (277)
T PRK09628 141 MWTVTAQYGNIDPTFDACKLATAAGASFVARESVI--DPQKLEKLLVKGF-SHKGFSFFDVFS 200 (277)
T ss_pred ceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccC--CHHHHHHHHHHHH-hCCCCEEEEEcC
Confidence 123478999999999985 564 8999999999998 578999999864
No 104
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.85 E-value=4.9e-21 Score=170.31 Aligned_cols=116 Identities=24% Similarity=0.302 Sum_probs=99.5
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---- 125 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---- 125 (176)
.++|+||+++|.|+|++++.+ +++|||++|||+|++ ..++|+||+++++|+++||+||+.|++....+.
T Consensus 434 ~g~gsmG~~l~~aiGa~la~~-----~~~vv~i~GDGsf~~--~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~ 506 (578)
T PRK06112 434 RGLAGLGWGVPMAIGAKVARP-----GAPVICLVGDGGFAH--VWAELETARRMGVPVTIVVLNNGILGFQKHAETVKFG 506 (578)
T ss_pred CCccccccHHHHHHHHHhhCC-----CCcEEEEEcchHHHh--HHHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccC
Confidence 356899999999999999876 789999999999985 567899999999999999999998886542211
Q ss_pred ------ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 ------QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 ------~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.....||.++|++||+++++|+ +++++.+++++++ ..++|+|||+++
T Consensus 507 ~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~-~~~gp~lIev~~ 559 (578)
T PRK06112 507 THTDACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAM-AAPGPTLIEVIT 559 (578)
T ss_pred CccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEc
Confidence 1134689999999999999996 8999999999997 468999999986
No 105
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=99.85 E-value=1.1e-20 Score=173.16 Aligned_cols=171 Identities=13% Similarity=0.045 Sum_probs=132.9
Q ss_pred CCCCChHHHHHHHHcCCCCHHHHhhhhhcCCC-C---C----CCCCC-----C-----CC-ccccCCcccchhHHHHHHH
Q psy786 5 EIPFRTNRSKAWAEAGLFPVSELKNLRKIDSD-L---E----GHPTP-----R-----LN-FIDVGTGSLGQGLSVAAGM 65 (176)
Q Consensus 5 ~~~~~~~~ya~l~~~G~~~~e~l~~~r~~~~~-l---~----~~~~~-----~-----~~-~~~~~~g~~G~~l~~AvG~ 65 (176)
-||||.-|....-.+|+-+.+.+..|...... . . .|... . +. .+....+.++...|+|+|.
T Consensus 248 gmaHRGRlnvL~nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~Pva~G~ 327 (929)
T TIGR00239 248 GMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIGS 327 (929)
T ss_pred ccccCCcHHHHHHHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccchhhhH
Confidence 37888888877777887666666566432111 1 0 11110 0 11 1233567899999999999
Q ss_pred HHhchhcCCC-----cceEEEEECCCcc-CCchHHHHHHHhhhcCCCc--EEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 66 AYVGKYFDKA-----SYRTYCLVGDGES-AEGSIWEALHFASYYKLDN--LCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 66 A~a~~~~~~~-----~~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp~--liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
|+|.++..+. +..+||+.|||++ .+|.++|+|++|+.|++|+ +++|+.||+|+++++.....+...+.++|+
T Consensus 328 ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd~Ak 407 (929)
T TIGR00239 328 TRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAK 407 (929)
T ss_pred HHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHHHhe
Confidence 9998865332 5689999999997 7999999999999999996 689999999999997666666667888999
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEeee
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQRGC 175 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~~~ 175 (176)
+||++++.|||+|++++.++.+.|+++ -++|+|||+.|
T Consensus 408 ~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~t 448 (929)
T TIGR00239 408 MIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVG 448 (929)
T ss_pred ecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 999999999999999999999999874 35899999987
No 106
>KOG1182|consensus
Probab=99.85 E-value=9e-22 Score=159.45 Aligned_cols=124 Identities=24% Similarity=0.248 Sum_probs=111.9
Q ss_pred CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccH
Q psy786 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTE 130 (176)
Q Consensus 51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~ 130 (176)
-++++..++|.|+|+|++.|...+.++.+||++|||+..+|.++.++++|+..+.| ++|+|-||+|.|++++.++...+
T Consensus 191 issplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~P-vif~CRNNG~AISTptseQyr~D 269 (432)
T KOG1182|consen 191 ISSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECP-VIFFCRNNGWAISTPTSEQYRGD 269 (432)
T ss_pred ecchhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCC-EEEEEcCCCeeeccccHHHhcCC
Confidence 46788999999999999999655667899999999999999999999999999999 78999999999999999888777
Q ss_pred HHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEeee
Q psy786 131 VYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQRGC 175 (176)
Q Consensus 131 ~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~~~ 175 (176)
-++....+||+..++|||+|.-+++.|.++|.+. .++|+|||+..
T Consensus 270 GIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamt 317 (432)
T KOG1182|consen 270 GIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMT 317 (432)
T ss_pred ceEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhh
Confidence 7777888999999999999999999999999753 46999999753
No 107
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.85 E-value=4.5e-21 Score=170.82 Aligned_cols=116 Identities=19% Similarity=0.231 Sum_probs=99.1
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----- 124 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----- 124 (176)
.++|+||+++|.|+|++++.+ +++|||++|||+|++. ..+|+||+++++|+++||+||++|++....+
T Consensus 416 ~~~gsmG~~lpaaiGa~la~p-----~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~ 488 (586)
T PRK06276 416 GGLGTMGFGFPAAIGAKVAKP-----DANVIAITGDGGFLMN--SQELATIAEYDIPVVICIFDNRTLGMVYQWQNLYYG 488 (586)
T ss_pred CCccccccchhHHHhhhhhcC-----CCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhC
Confidence 356999999999999999876 6799999999999974 4679999999999999999999998753211
Q ss_pred -----ccc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 -----LQH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 -----~~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
... ..+||.+++++||.++++|+ +++||.+++++|+ ..++|.|||+.+
T Consensus 489 ~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~lIeV~i 542 (586)
T PRK06276 489 KRQSEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAI-KSGEPYLLDIII 542 (586)
T ss_pred CCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 111 34799999999999999996 8999999999997 468999999975
No 108
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.85 E-value=6.6e-21 Score=167.90 Aligned_cols=116 Identities=28% Similarity=0.333 Sum_probs=99.6
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc------
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT------ 123 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~------ 123 (176)
..+|+||+++|.|+|++++.+ +++|+|++|||+|+|+ .++|+||.++++|++++|+||++|++....
T Consensus 404 ~~~g~mG~~lp~aiGa~la~p-----~~~vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~ 476 (530)
T PRK07092 404 MASGGLGYGLPAAVGVALAQP-----GRRVIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGV 476 (530)
T ss_pred cCCCcccchHHHHHHHHHhCC-----CCeEEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCC
Confidence 346999999999999999876 6899999999999975 478999999999999999999999875321
Q ss_pred ----ccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 124 ----SLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 124 ----~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.......||.+++++||+++++|+ +++++.+++++++ +.++|+|||+.+
T Consensus 477 ~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~a~-~~~~p~liev~~ 529 (530)
T PRK07092 477 RDVPGLDLPGLDFVALARGYGCEAVRVS--DAAELADALARAL-AADGPVLVEVEV 529 (530)
T ss_pred CCCCCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEc
Confidence 112245789999999999999997 8999999999997 578999999975
No 109
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.85 E-value=7.2e-21 Score=168.55 Aligned_cols=116 Identities=17% Similarity=0.146 Sum_probs=99.4
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----- 124 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----- 124 (176)
..+|+||+++|.|+|++++.+ +++|||++|||+|++ ..++|+||+++++|+++||+||++|++....+
T Consensus 412 ~~~g~mG~glpaaiGa~la~p-----~~~vv~i~GDGsf~~--~~~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~ 484 (557)
T PRK08199 412 PTSGSMGYGLPAAIAAKLLFP-----ERTVVAFAGDGCFLM--NGQELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYP 484 (557)
T ss_pred CCCccccchHHHHHHHHHhCC-----CCcEEEEEcchHhhc--cHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcC
Confidence 457999999999999999876 789999999999996 45789999999999999999999998653211
Q ss_pred -----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 -----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 -----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.....+||.+++++||+++++|+ +++++.+++++++ ..++|+|||+.+
T Consensus 485 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-~~~gp~li~v~~ 537 (557)
T PRK08199 485 GRVSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERAL-ASGKPALIEIRI 537 (557)
T ss_pred CccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 11234699999999999999997 8999999999997 478999999875
No 110
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=99.84 E-value=2.6e-20 Score=171.19 Aligned_cols=169 Identities=15% Similarity=0.144 Sum_probs=130.7
Q ss_pred CCCChHHHHHHHHcCCCCHHHHhhhhhcC--------CCCC---CCCC----C-C-CCc-cccCCcccchhHHHHHHHHH
Q psy786 6 IPFRTNRSKAWAEAGLFPVSELKNLRKID--------SDLE---GHPT----P-R-LNF-IDVGTGSLGQGLSVAAGMAY 67 (176)
Q Consensus 6 ~~~~~~~ya~l~~~G~~~~e~l~~~r~~~--------~~l~---~~~~----~-~-~~~-~~~~~g~~G~~l~~AvG~A~ 67 (176)
|+||.-++.....+|+-+++.+..|.... .... |+.. . . ++. .....+.+|...|+|+|.|+
T Consensus 249 maHRgrlnvLa~v~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~npShleav~Pva~G~A~ 328 (924)
T PRK09404 249 MAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVR 328 (924)
T ss_pred cCcCchHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccCCccccccccCeehhHHH
Confidence 67888888877778977666666663221 0011 1111 0 0 110 01124678999999999999
Q ss_pred hchhcCCCc------ceEEEEECCCcc-CCchHHHHHHHhhhcCCC--cEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786 68 VGKYFDKAS------YRTYCLVGDGES-AEGSIWEALHFASYYKLD--NLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA 138 (176)
Q Consensus 68 a~~~~~~~~------~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp--~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a 138 (176)
|.++.+ .+ ..+|++.|||++ .+|.++|+|++|+.|++| -+++||.||+|+++++.....+...+.++|++
T Consensus 329 A~q~~~-~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~~sd~Ak~ 407 (924)
T PRK09404 329 ARQDRR-GDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKM 407 (924)
T ss_pred HHHHhc-CCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchhHHHHHee
Confidence 998643 34 689999999998 799999999999999997 46788888999999988777666778899999
Q ss_pred cCceEEEecCCCHHHHHHHHHHHHhhC---CCcEEEEeee
Q psy786 139 FGFNAVVVDGHDVEHLVKVSSFKLQKA---IGCVWIQRGC 175 (176)
Q Consensus 139 ~G~~~~~vdG~d~~~l~~al~~a~~~~---~~P~lI~~~~ 175 (176)
||+++++|||+|++++.++.+.|+++. ++|+|||+.|
T Consensus 408 ~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~t 447 (924)
T PRK09404 408 VQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVC 447 (924)
T ss_pred cCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEE
Confidence 999999999999999999999998743 6899999976
No 111
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.84 E-value=8.4e-20 Score=160.36 Aligned_cols=140 Identities=25% Similarity=0.289 Sum_probs=122.0
Q ss_pred ChHHHHHHHHcCCCCHHHHhhhhhc--CCCCCCCCCCC-CC-ccccCCcccchhHHHHHHHHHhchhc------CCCcce
Q psy786 9 RTNRSKAWAEAGLFPVSELKNLRKI--DSDLEGHPTPR-LN-FIDVGTGSLGQGLSVAAGMAYVGKYF------DKASYR 78 (176)
Q Consensus 9 ~~~~ya~l~~~G~~~~e~l~~~r~~--~~~l~~~~~~~-~~-~~~~~~g~~G~~l~~AvG~A~a~~~~------~~~~~~ 78 (176)
+|++||...+.|+++.|+|.+||+. |.+++++|+|+ +| ++++.++|||-+...|+-.|...||+ +.++++
T Consensus 144 SPg~yArafLeGRlseeqLdnFRqev~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~ 223 (887)
T COG2609 144 SPGIYARAFLEGRLTEEQLDNFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQK 223 (887)
T ss_pred CchHHHHHHHhccccHHHHHHHHHhccCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCe
Confidence 6889999999999999999999987 45799999987 44 78899999999999999999999887 346789
Q ss_pred EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccccc-ccHHHHHHHhhcCceEEEe-cC
Q psy786 79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQH-QTEVYRKRLDAFGFNAVVV-DG 148 (176)
Q Consensus 79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~-~~~~~~~~a~a~G~~~~~v-dG 148 (176)
|+||.|||++.++...+++..|++++|.|++||+|+|....+++..... ...+++.++++.||++++| .|
T Consensus 224 v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgAGW~VikviWg 295 (887)
T COG2609 224 VWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWG 295 (887)
T ss_pred EEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcccCCchhHHHHHHHhccCCceEEEEEec
Confidence 9999999999999999999999999999999999999999988765431 2356788888888888866 44
No 112
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.84 E-value=7.4e-21 Score=168.47 Aligned_cols=116 Identities=21% Similarity=0.267 Sum_probs=98.7
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc------
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT------ 123 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~------ 123 (176)
.++|+||+++|.|+|++++.+ +++||+++|||+|++. .++|+||+++++|+++||+||++|++....
T Consensus 409 ~~~g~mG~~l~aaiGa~la~~-----~~~vv~~~GDG~f~~~--~~eL~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~ 481 (558)
T TIGR00118 409 GGLGTMGFGLPAAIGAKVAKP-----ESTVICITGDGSFQMN--LQELSTAVQYDIPVKILILNNRYLGMVRQWQELFYE 481 (558)
T ss_pred CccccccchhhHHHhhhhhCC-----CCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcC
Confidence 456999999999999999876 6899999999999974 356999999999999999999999865311
Q ss_pred ----c-cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 124 ----S-LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 124 ----~-~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
. ...+.+||.+++++||+++++|+ +.+++.+++++++ ..++|+|||+.+
T Consensus 482 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~-~~~~p~liev~~ 535 (558)
T TIGR00118 482 ERYSHTHMGSLPDFVKLAEAYGIKGIRIE--KPEELDEKLKEAL-SSNEPVLLDVVV 535 (558)
T ss_pred CceeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 0 11124799999999999999997 7999999999998 468999999975
No 113
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.84 E-value=1.3e-20 Score=167.29 Aligned_cols=116 Identities=17% Similarity=0.114 Sum_probs=96.1
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCcccc-------
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSE------- 121 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~------- 121 (176)
...+|+||+++|.|+|++++. +++||+++|||+|+| ..++|+||+++++|+++||+||++|....
T Consensus 420 ~~~~gsmG~glpaaiGa~la~------~~~vv~i~GDG~f~m--~~~EL~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~ 491 (569)
T PRK09259 420 CGTWGVMGIGMGYAIAAAVET------GKPVVAIEGDSAFGF--SGMEVETICRYNLPVTVVIFNNGGIYRGDDVNLSGA 491 (569)
T ss_pred CCCCccccccHHHHHHHHhcC------CCcEEEEecCccccc--cHHHHHHHHHcCCCEEEEEEeChhHHHHHHHHhhcC
Confidence 346799999999999999983 578999999999997 44669999999999999999999862110
Q ss_pred -C-cccc-cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 122 -P-TSLQ-HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 122 -~-~~~~-~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
. .... .+.+||.++|++||+++++|+ ++++|.+++++|+ ..++|+|||+.+
T Consensus 492 ~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~lIev~i 545 (569)
T PRK09259 492 GDPSPTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAI-ASGKPTLINVVI 545 (569)
T ss_pred CCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEE
Confidence 0 0011 135799999999999999996 8999999999998 478999999975
No 114
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.84 E-value=1.7e-20 Score=154.46 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=96.8
Q ss_pred CcccchhHHHHHHHHHhchhcCCCcceEEEEECCCcc-CCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc-----
Q psy786 52 TGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGES-AEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----- 125 (176)
Q Consensus 52 ~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----- 125 (176)
.++||+++|+|+|+++|++ +++||++.|||++ ++| .++|.+|+++++|+++||+||+.|++.+.+..
T Consensus 69 ~g~mG~alpaAiGaklA~p-----d~~VV~i~GDG~~~~mg--~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~ 141 (301)
T PRK05778 69 HTLHGRAIAFATGAKLANP-----DLEVIVVGGDGDLASIG--GGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPE 141 (301)
T ss_pred chhhccHHHHHHHHHHHCC-----CCcEEEEeCccHHHhcc--HHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCC
Confidence 4889999999999999987 7899999999997 454 45699999999999999999999998764321
Q ss_pred -----------ccccHHHHHHHhhcCceEE-EecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 -----------QHQTEVYRKRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 -----------~~~~~~~~~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.....|+.++|+++|+.++ +....+++++.+++++|+ ..++|+|||+.+
T Consensus 142 g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~-~~~GpalIeV~~ 202 (301)
T PRK05778 142 GSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAI-SHKGFAFIDVLS 202 (301)
T ss_pred CcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHH-hCCCCEEEEEcC
Confidence 0124699999999999987 323348999999999998 578999999864
No 115
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.83 E-value=9.5e-21 Score=168.06 Aligned_cols=115 Identities=17% Similarity=0.103 Sum_probs=97.4
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc----cc
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT----SL 125 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~----~~ 125 (176)
.+.++||+++|.|+|++++ + +++|||++|||+|++. .++|+|++++++|+++||+||++|++.... +.
T Consensus 422 ~g~~~~G~~lpaaiGaala-~-----~~~vv~i~GDGsf~~~--~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~ 493 (568)
T PRK07449 422 RGASGIDGLLSTAAGVARA-S-----AKPTVALIGDLSFLHD--LNGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEE 493 (568)
T ss_pred CCccchhhHHHHHHHHHhc-C-----CCCEEEEechHHhhcC--cHHHHhhcccCCCeEEEEEECCCCccccCCCCCCCc
Confidence 3568899999999999998 5 6789999999999974 356999999999999999999999853211 10
Q ss_pred --------ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 --------QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 --------~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
....+||+++|++||+++++|+ +++||.+++++|+ ..++|+|||+++
T Consensus 494 ~~~~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~-~~~~p~lIev~i 548 (568)
T PRK07449 494 PVFERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADAL-PTPGLTVIEVKT 548 (568)
T ss_pred chhhHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHh-cCCCCEEEEEeC
Confidence 1134799999999999999996 8999999999997 578999999986
No 116
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.82 E-value=5e-20 Score=150.14 Aligned_cols=118 Identities=13% Similarity=-0.008 Sum_probs=97.2
Q ss_pred CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc-----
Q psy786 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----- 125 (176)
Q Consensus 51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----- 125 (176)
..+.||+++|.|+|++++++ +++||+++|||++++ ...++|.+|+++++|+++||+||+.|++.+.+..
T Consensus 58 ~~~~mG~alp~AiGaklA~p-----d~~VVai~GDG~~~~-iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~ 131 (280)
T PRK11869 58 FHTLHGRAIPAATAVKATNP-----ELTVIAEGGDGDMYA-EGGNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLK 131 (280)
T ss_pred CCcccccHHHHHHHHHHHCC-----CCcEEEEECchHHhh-CcHHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCC
Confidence 45679999999999999976 789999999999874 2245699999999999999999999997653321
Q ss_pred -----------ccccHHHHHHHhhcCceEEEe-cCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 -----------QHQTEVYRKRLDAFGFNAVVV-DGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 -----------~~~~~~~~~~a~a~G~~~~~v-dG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
...+.|+.++|+++|++++.. .-.+++++.+++++|+ ..++|+|||+.+
T Consensus 132 g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al-~~~Gp~lIeV~~ 192 (280)
T PRK11869 132 GFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAI-KHKGLAIVDIFQ 192 (280)
T ss_pred CcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHH-hCCCCEEEEEEC
Confidence 112359999999999998862 2358999999999998 578999999863
No 117
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.82 E-value=2.1e-19 Score=156.48 Aligned_cols=166 Identities=25% Similarity=0.338 Sum_probs=132.7
Q ss_pred CCCCCChH--HHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCCCCccc-cCCcccchhHHHHHHHHHhchhcCCCcceEE
Q psy786 4 NEIPFRTN--RSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFID-VGTGSLGQGLSVAAGMAYVGKYFDKASYRTY 80 (176)
Q Consensus 4 ~~~~~~~~--~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~~~~~~-~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv 80 (176)
|.+-|++. -|+...++|+ +|++.+.|+.+ +++|++.+..+-.+ +..|.-+.++++|+|+|.|... .+.++.||
T Consensus 66 D~~IwDVgHQaYpHKiLTGR--~e~f~tlRq~~-GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~-~g~~~~vv 141 (627)
T COG1154 66 DKLIWDVGHQAYPHKILTGR--REQFDTLRQKD-GLSGFPKREESEHDWFGVGHSSTSISAALGMAKARDL-KGEDRNVV 141 (627)
T ss_pred CCeEEecCcccchhHHhcCc--hhhcchhhhcC-CCCCCCCcccCCCcccccCchHHHHHHHhhHHHHHHh-cCCCCcEE
Confidence 33445555 6899999997 58999999997 69999998755444 5889999999999999999875 45678899
Q ss_pred EEECCCccCCchHHHHHHHhh-hcCCCcEEEEEecCCCccccCcccc--------cc-----------------------
Q psy786 81 CLVGDGESAEGSIWEALHFAS-YYKLDNLCVIFDINRLGQSEPTSLQ--------HQ----------------------- 128 (176)
Q Consensus 81 ~~~GDG~~~~G~~~eal~~a~-~~~lp~liiV~~nn~~~~~~~~~~~--------~~----------------------- 128 (176)
+++|||++.-||.+||||.|. ..+- +++||+|||..+|+.+.... .+
T Consensus 142 aVIGDGAlt~GmA~EALN~ag~~~~~-~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~ 220 (627)
T COG1154 142 AVIGDGALTGGMAFEALNNAGADLKS-NLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKR 220 (627)
T ss_pred EEECCccccchHHHHHHhhhhhccCC-CEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHH
Confidence 999999999999999999998 3334 48999999999998654210 00
Q ss_pred -----cHHHH------HHHhhcCceEE-EecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 129 -----TEVYR------KRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 129 -----~~~~~------~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
...+. .+++.+|++++ .+||||.++|..+|+.+. ..++|+||++.+
T Consensus 221 ~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~k-d~~gPvllHv~T 278 (627)
T COG1154 221 FAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPTLKNAK-DLKGPVLLHVVT 278 (627)
T ss_pred HHHHHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHHHHHHHh-cCCCCEEEEEEe
Confidence 00111 27888999999 789999999999999995 578999999853
No 118
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.81 E-value=1.3e-19 Score=147.74 Aligned_cols=117 Identities=20% Similarity=0.145 Sum_probs=98.4
Q ss_pred CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCC-ccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccccc--
Q psy786 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDG-ESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQH-- 127 (176)
Q Consensus 51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG-~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~-- 127 (176)
..++||+++|+|+|+++|++ +++||+++||| +|++| .++|.+|+++++|++++|+||+.|++.+.+....
T Consensus 57 ~~~~~G~alp~A~GaklA~P-----d~~VV~i~GDG~~f~ig--~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~ 129 (279)
T PRK11866 57 IHGIHGRVLPIATGVKWANP-----KLTVIGYGGDGDGYGIG--LGHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTP 129 (279)
T ss_pred cccccccHHHHHHHHHHHCC-----CCcEEEEECChHHHHcc--HHHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCC
Confidence 46889999999999999987 78999999999 68876 3569999999999999999999999986443211
Q ss_pred --------------ccHHHHHHHhhcCceEE-EecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 128 --------------QTEVYRKRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 128 --------------~~~~~~~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.+.|+.++|+++|+.++ +....+++++.+++++|+ ..++|+|||+..
T Consensus 130 ~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al-~~~Gps~I~v~~ 191 (279)
T PRK11866 130 RGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAI-KHKGFSFIDVLS 191 (279)
T ss_pred CCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHH-hCCCCEEEEEeC
Confidence 11389999999999877 445569999999999998 578999999864
No 119
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.81 E-value=1.7e-19 Score=161.53 Aligned_cols=167 Identities=19% Similarity=0.227 Sum_probs=134.3
Q ss_pred CCCCCCChH--HHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCCCCccc-cCCcccchhHHHHHHHHHhchhcCCCcceE
Q psy786 3 TNEIPFRTN--RSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFID-VGTGSLGQGLSVAAGMAYVGKYFDKASYRT 79 (176)
Q Consensus 3 ~~~~~~~~~--~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~~~~~~-~~~g~~G~~l~~AvG~A~a~~~~~~~~~~v 79 (176)
.|.+.||.. -|+...++|+ ++.+.. |+.+ ++.|+|.+...-.| ++.|.-+.++++|+|+|.|+.+ .+.++.|
T Consensus 140 ~DkiiwDvgHQ~Y~HKiLTGR--~~~f~~-Rq~~-GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl-~g~~~~v 214 (701)
T PLN02225 140 VDNILWDAVEQTYAHKVLTRR--WSAIPS-RQKN-GISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDI-KGKRDRV 214 (701)
T ss_pred CCceeeccccccchhhHhcCC--hhhcCc-cccC-CcCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHh-cCCCCcE
Confidence 467778887 8999999997 477765 9996 69999998755455 5889999999999999999886 4456789
Q ss_pred EEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccC--------cccc-------------------------
Q psy786 80 YCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEP--------TSLQ------------------------- 126 (176)
Q Consensus 80 v~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~--------~~~~------------------------- 126 (176)
|+++|||++.-|+.+|+|+-|...+-+ ++||+|||.++|+.+ ....
T Consensus 215 vaVIGDGaltgGma~EaLN~~g~~~~~-livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~ 293 (701)
T PLN02225 215 VAVIDNATITAGQAYEAMSNAGYLDSN-MIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTK 293 (701)
T ss_pred EEEEcCcchhhhhHHHHHhhhhccCCC-EEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 999999999999999999999998866 899999999999877 2100
Q ss_pred -cc--cHHH---------------H-HHHhhcCceEE-EecCCCHHHHHHHHHHHHhhC-CCcEEEEeee
Q psy786 127 -HQ--TEVY---------------R-KRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKA-IGCVWIQRGC 175 (176)
Q Consensus 127 -~~--~~~~---------------~-~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~-~~P~lI~~~~ 175 (176)
.+ ...+ . .+++.+|++++ .|||||.++|.++++++.+.. ++|+|||+..
T Consensus 294 ~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~~~~~PvlvHv~T 363 (701)
T PLN02225 294 RIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSLDSMGPVLVHVIT 363 (701)
T ss_pred hCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcCCCCCCEEEEEEe
Confidence 00 0000 1 36788999999 889999999999999985321 4999999853
No 120
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.81 E-value=2.1e-19 Score=146.91 Aligned_cols=115 Identities=18% Similarity=0.204 Sum_probs=93.5
Q ss_pred CcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccC-CchHHHHHHHhhhcCCCcEEEEEecCCCccccCccccc---
Q psy786 52 TGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESA-EGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQH--- 127 (176)
Q Consensus 52 ~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~-~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~--- 127 (176)
.+.||+++|+|+|+++|++ +++|||++|||++. +| .++|.+|+++++|++++|+||+.|++.+.++...
T Consensus 52 ~t~mG~alPaAiGaklA~P-----d~~VVai~GDG~f~~mg--~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~ 124 (287)
T TIGR02177 52 HGLHGRALPVATGIKLANP-----HLKVIVVGGDGDLYGIG--GNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLK 124 (287)
T ss_pred ccccccHHHHHHHHHHHCC-----CCcEEEEeCchHHHhcc--HHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccC
Confidence 3568999999999999987 78999999999974 54 4569999999999999999999999876443200
Q ss_pred ---------------ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 128 ---------------QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 128 ---------------~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
..+++..+++++|+.....- .+++++.+++++|+ ..++|+|||+..
T Consensus 125 G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~-~~~~eL~~ai~~Al-~~~GpslIeV~~ 185 (287)
T TIGR02177 125 GVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFS-GDVAHLKEIIKEAI-NHKGYALVDILQ 185 (287)
T ss_pred CcceeecccCccCCCCCHHHHHHhCCCCeEEEEec-CCHHHHHHHHHHHH-hCCCCEEEEEeC
Confidence 13467788888887766522 48999999999998 578999999863
No 121
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.81 E-value=2.1e-19 Score=147.19 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=95.6
Q ss_pred cccchhHHHHHHHHHhchhcCCCcceEEEEECCCc-cCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc-----
Q psy786 53 GSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGE-SAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ----- 126 (176)
Q Consensus 53 g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~-~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~----- 126 (176)
++||+++|+|+|+++|++ +++||+++|||+ |++| .++|.+|+++++|+++||+||+.|++.+.+...
T Consensus 69 g~mG~alpaAiGaklA~P-----d~~VV~i~GDG~~f~mg--~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g 141 (286)
T PRK11867 69 TIHGRALAIATGLKLANP-----DLTVIVVTGDGDALAIG--GNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVG 141 (286)
T ss_pred hhhhcHHHHHHHHHHhCC-----CCcEEEEeCccHHHhCC--HHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCC
Confidence 899999999999999986 789999999996 8875 356999999999999999999999987643210
Q ss_pred -----------cccHHHHHHHhhcCceEEE-ecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 127 -----------HQTEVYRKRLDAFGFNAVV-VDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 127 -----------~~~~~~~~~a~a~G~~~~~-vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
..+.|+.++|+++|...+. +...+++++.+++++|+ +.++|+|||+..
T Consensus 142 ~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al-~~~Gp~lIev~~ 201 (286)
T PRK11867 142 FVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAI-NHKGFSFVEILQ 201 (286)
T ss_pred cccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHH-hCCCCEEEEEeC
Confidence 0125789999999998773 33358999999999998 578999999863
No 122
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.79 E-value=6.3e-19 Score=157.34 Aligned_cols=156 Identities=21% Similarity=0.156 Sum_probs=113.6
Q ss_pred CCCChHHHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECC
Q psy786 6 IPFRTNRSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGD 85 (176)
Q Consensus 6 ~~~~~~~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GD 85 (176)
=||++.++++..... .+.+ -..+.|+...+...|. ..+ ..+++||+++|.|+|++++.+ +++||+++||
T Consensus 362 Cp~~~~~~~l~~~l~---~d~i-vv~D~G~~~~~~~~p~-~~~-~~~~~mG~~~~~AiGa~~a~p-----~~~Vv~i~GD 430 (595)
T TIGR03336 362 CPHRATFYAMKKVAD---REAI-FPSDIGCYTLGIQPPL-GTV-DTTLCMGASIGVASGLSKAGE-----KQRIVAFIGD 430 (595)
T ss_pred CCChHHHHHHHHhcc---CCcE-EecCcchhhccccCCc-ccc-ceeeccCchHHHHhhhhhcCC-----CCCEEEEecc
Confidence 488888777766663 3322 1233342221111111 112 235899999999999999876 6899999999
Q ss_pred CccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc----------cccHHHHHHHhhcCceEEEec-CCCHHHH
Q psy786 86 GESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ----------HQTEVYRKRLDAFGFNAVVVD-GHDVEHL 154 (176)
Q Consensus 86 G~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~----------~~~~~~~~~a~a~G~~~~~vd-G~d~~~l 154 (176)
|+|++.. .++|.+|.++++|++++|+||+.|++.+.++.. ....||+++++++|+++++|. -.+.+++
T Consensus 431 G~f~~~g-~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l 509 (595)
T TIGR03336 431 STFFHTG-IPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKET 509 (595)
T ss_pred chhhhcC-HHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHH
Confidence 9999631 456999999999999999999999987644221 124689999999999999884 3456788
Q ss_pred HHHHHHHHhhCCCcEEEEee
Q psy786 155 VKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 155 ~~al~~a~~~~~~P~lI~~~ 174 (176)
.+++++++ ..++|.+|+++
T Consensus 510 ~~al~~a~-~~~gp~li~v~ 528 (595)
T TIGR03336 510 IEVFKAAL-AAEGVSVIIAK 528 (595)
T ss_pred HHHHHHHH-hcCCCEEEEEc
Confidence 99999997 46899999885
No 123
>KOG1185|consensus
Probab=99.71 E-value=1e-16 Score=136.44 Aligned_cols=117 Identities=23% Similarity=0.205 Sum_probs=96.9
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCC-ccccCcc----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRL-GQSEPTS---- 124 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~-~~~~~~~---- 124 (176)
.++|+||-|++.|+++|++.+ +++|+|+-||++|... .+ ++.|++|||||++++|+|||+. +.+....
T Consensus 427 GtfgTMGVG~Gfalaaa~~~P-----~~~V~~veGDsaFGfS-aM-E~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~ 499 (571)
T KOG1185|consen 427 GTFGTMGVGLGFALAAALAAP-----DRKVVCVEGDSAFGFS-AM-ELETFVRYKLPVVIVVGNNNGIYGLDDDGWKQIS 499 (571)
T ss_pred ccccccccchhHHHHHHhhCC-----CCeEEEEecCcccCcc-hh-hHHHHHHhcCCeEEEEecCCcccccCcccHHHHh
Confidence 378999999999999999886 7899999999999863 34 5999999999999999988874 4332211
Q ss_pred -----------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 -----------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 -----------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
......+|.+++++||.+++.|+ ++++|.++++++.+..++|++|.+.+
T Consensus 500 e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q~~~~psvINVlI 559 (571)
T KOG1185|consen 500 EQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQDTDKPSVINVLI 559 (571)
T ss_pred hcCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 01234689999999999999997 99999999999997677999998754
No 124
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.71 E-value=3.8e-17 Score=140.24 Aligned_cols=120 Identities=17% Similarity=0.126 Sum_probs=99.9
Q ss_pred cccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc--
Q psy786 48 IDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL-- 125 (176)
Q Consensus 48 ~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~-- 125 (176)
.+.-||++||.+|+|+|+++|.+ +|++|.++|||++|+ ..+++.+..|++|+.++||+||++|.+++....
T Consensus 406 ~Q~lWGSIG~t~pAalGa~~A~~-----drR~IL~iGDGs~Ql--TvQEiStmiR~gl~p~ifvlNN~GYTIEr~IHg~~ 478 (557)
T COG3961 406 SQPLWGSIGYTLPAALGAALAAP-----DRRVILFIGDGSLQL--TVQEISTMIRWGLKPIIFVLNNDGYTIERAIHGPT 478 (557)
T ss_pred cccchhhcccccHhhhhhhhcCC-----CccEEEEEcCchhhh--hHHHHHHHHHcCCCcEEEEEcCCCcEEEehhcCCC
Confidence 45689999999999999999998 799999999999995 667799999999999999999999998764432
Q ss_pred ----ccccHHHHHHHhhcCceEEEe--cCCCHHHHHHHHHHHHhhCCCcEEEEee
Q psy786 126 ----QHQTEVYRKRLDAFGFNAVVV--DGHDVEHLVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 126 ----~~~~~~~~~~a~a~G~~~~~v--dG~d~~~l~~al~~a~~~~~~P~lI~~~ 174 (176)
.-..+||.++.++||..-.+. .-...+++..+++.+.+..+++.+||+.
T Consensus 479 ~~YNdI~~Wd~~~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~lIEv~ 533 (557)
T COG3961 479 APYNDIQSWDYTALPEAFGAKNGEAKFRATTGEELALALDVAFANNDRIRLIEVM 533 (557)
T ss_pred cCcccccccchhhhhhhcCCCCceEEEeecChHHHHHHHHHHhcCCCceEEEEEe
Confidence 123479999999998653321 2247889999999998667799999986
No 125
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.70 E-value=4.9e-17 Score=158.39 Aligned_cols=116 Identities=16% Similarity=0.026 Sum_probs=97.3
Q ss_pred ccCCcccch--hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhc--CCCcEEEEEecCCCccccCc-
Q psy786 49 DVGTGSLGQ--GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYY--KLDNLCVIFDINRLGQSEPT- 123 (176)
Q Consensus 49 ~~~~g~~G~--~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~--~lp~liiV~~nn~~~~~~~~- 123 (176)
....|+||+ ++|.|+|++++. +++|+|++|||+|++ ..++|.||+++ ++|+++||+||++|++....
T Consensus 755 ~~~~G~mG~~G~lpaAIGaala~------~r~Vv~i~GDGsF~m--~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~ 826 (1655)
T PLN02980 755 AGNRGASGIDGLLSTAIGFAVGC------NKRVLCVVGDISFLH--DTNGLSILSQRIARKPMTILVINNHGGAIFSLLP 826 (1655)
T ss_pred EecCCccchhhhHHHHHHHhhcC------CCCEEEEEehHHHHh--hhhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCc
Confidence 346799999 599999999875 468999999999996 45679999985 99999999999998875421
Q ss_pred -----c-c---c----cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 124 -----S-L---Q----HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 124 -----~-~---~----~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
+ . . ...+||.++|++||+++.+|+ ++++|.+++++|+ ..++|+|||+.+
T Consensus 827 ~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~-~~~~p~lIEV~t 888 (1655)
T PLN02980 827 IAKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQ-VEQMDCVVEVES 888 (1655)
T ss_pred cCCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhh-ccCCCEEEEEec
Confidence 1 0 0 124689999999999999996 8999999999997 568999999986
No 126
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.68 E-value=9.4e-16 Score=125.91 Aligned_cols=126 Identities=16% Similarity=0.098 Sum_probs=100.5
Q ss_pred cccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc--
Q psy786 48 IDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL-- 125 (176)
Q Consensus 48 ~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~-- 125 (176)
++....++|.+++.|.|++++.+.++.++..|++++|||++..+.+ |+|+.|..+++|++++|.||..|.+.+.+..
T Consensus 64 ~~~i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~ 142 (300)
T PRK11864 64 VPVLHTAFAATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSS 142 (300)
T ss_pred ccceeehhhChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCC
Confidence 3334688999999999999998765545566777999999987654 9999999999997777777666666554321
Q ss_pred --------------ccccHHHHHHHhhcCceEE-EecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 --------------QHQTEVYRKRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 --------------~~~~~~~~~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.....|+.++++++|..++ +++-.++.++.+++++|+ ..+||.+|++..
T Consensus 143 Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~-~~~Gps~I~~~s 206 (300)
T PRK11864 143 TPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAK-EIRGFKFIHLLA 206 (300)
T ss_pred CcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHH-hCCCCEEEEEeC
Confidence 1123588999999999888 677789999999999998 578999999863
No 127
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=99.68 E-value=2.8e-16 Score=133.46 Aligned_cols=118 Identities=15% Similarity=0.164 Sum_probs=101.3
Q ss_pred cccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc---
Q psy786 48 IDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS--- 124 (176)
Q Consensus 48 ~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~--- 124 (176)
++.+.++|||-++.++|++++.+ ++.|++++||||++| ...+|.|+..++..++++++||.+|+...+.+
T Consensus 439 ~EYgfSCMGYEiaG~lG~K~a~p-----dreV~vmVGDGSymM--lnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~ 511 (617)
T COG3962 439 LEYGFSCMGYEIAGGLGAKAAEP-----DREVYVMVGDGSYMM--LNSELATSVMLGKKIIVVLLDNRGYGCINRLQMAT 511 (617)
T ss_pred eeecccccccccccccccccCCC-----CCeEEEEEcccchhh--hhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhc
Confidence 56688999999999999997665 789999999999996 56679999999999999999999999764321
Q ss_pred ---------------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 ---------------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 ---------------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
......||++.|++||.+.++|. +.++|++||++|. .+.+++||+++.
T Consensus 512 Gg~sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~aAL~~Ak-~~~~ttvi~I~t 574 (617)
T COG3962 512 GGASFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEELEAALADAK-ASDRTTVIVIDT 574 (617)
T ss_pred CcchhhhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHHHHHHHHHH-hCCCCEEEEEec
Confidence 12345799999999999999996 9999999999995 678999998864
No 128
>KOG4166|consensus
Probab=99.63 E-value=2.1e-16 Score=133.20 Aligned_cols=118 Identities=19% Similarity=0.149 Sum_probs=102.7
Q ss_pred cccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc-
Q psy786 48 IDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ- 126 (176)
Q Consensus 48 ~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~- 126 (176)
...+.|+||+++|+|+|+..|++ +..||-+-||+||.| ..++|.++.+.++|+.++|+||...+|.++++..
T Consensus 519 tSGGLGtMGfGLPAAIGAsVA~P-----~~iViDIDGDaSF~M--t~~ELat~rq~~~PVKiLiLNNeeqGMVtQWq~lF 591 (675)
T KOG4166|consen 519 TSGGLGTMGFGLPAAIGASVANP-----DAIVIDIDGDASFIM--TVQELATIRQENLPVKILILNNEEQGMVTQWQDLF 591 (675)
T ss_pred ecCCccccccCcchhhcccccCc-----ccEEEeccCCceeee--ehHhhhhhhhcCCceEEEEecchhhhhHHHHHHHH
Confidence 34578999999999999999987 789999999999986 4556999999999999999999999998776432
Q ss_pred ---------cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 127 ---------HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 127 ---------~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
..++++.++|+++|++..+|. ..++|++.+++-+ ..+||+|+|+-|
T Consensus 592 Ye~rysHThQ~nPnf~klA~AmGikalRV~--K~edL~~k~kefl-sTkGPvLleV~v 646 (675)
T KOG4166|consen 592 YEARYSHTHQENPNFLKLAAAMGIKALRVT--KKEDLREKIKEFL-STKGPVLLEVIV 646 (675)
T ss_pred HHhhhccccccCccHHHHHHhcCCchheee--hHHHHHHHHHHHh-CCCCCeEEEEEc
Confidence 235799999999999999995 7899999999987 578999999865
No 129
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.55 E-value=9.4e-14 Score=114.18 Aligned_cols=162 Identities=14% Similarity=0.033 Sum_probs=119.9
Q ss_pred CCChHHHHHHHHcCCCCHHHHhhhhhcCCCCCC-CCCCCCC-ccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEEC
Q psy786 7 PFRTNRSKAWAEAGLFPVSELKNLRKIDSDLEG-HPTPRLN-FIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVG 84 (176)
Q Consensus 7 ~~~~~~ya~l~~~G~~~~e~l~~~r~~~~~l~~-~~~~~~~-~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~G 84 (176)
+++.+++.++.+.| +++--....||.--+ ..-|..| .+....+.+|.+.+.|.|++.+.+.++ ++..||++.|
T Consensus 25 g~~~~~~~l~~a~g----~~~vi~~~iGC~s~~~~~~p~~~~~~~~~~~~fg~~~a~a~Gi~~a~~~~~-~~~~Vv~~~G 99 (299)
T PRK11865 25 GAAIAMRLALKALG----KNTVIVVATGCLEVITTPYPETAWNVPWIHVAFENAAAVASGIERAVKALG-KKVNVVAIGG 99 (299)
T ss_pred CcHHHHHHHHHHcC----CCEEEEeCCCcccccCccCcCCccccccchhhhcchHHHHHHHHHHHHHhc-CCCeEEEEeC
Confidence 56778888888876 222223556653322 1122222 344567889999999999999976432 3568999999
Q ss_pred CCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc---------------------cccHHHHHHHhhcCceE
Q psy786 85 DGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ---------------------HQTEVYRKRLDAFGFNA 143 (176)
Q Consensus 85 DG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~---------------------~~~~~~~~~a~a~G~~~ 143 (176)
||++..- -.++|.-|.+.+.+++++|+||..|++.+.+... .+..|+..++.++|..+
T Consensus 100 DG~~~dI-G~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~Y 178 (299)
T PRK11865 100 DGGTADI-GFQSLSGAMERGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPY 178 (299)
T ss_pred CchHhhc-cHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCE
Confidence 9998542 3478999999999999999999999987654321 12468899999999998
Q ss_pred E-EecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 144 V-VVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 144 ~-~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
+ +++-.++.++.+++++|+ ..+||.||++..
T Consensus 179 VA~~~~~~~~~l~~~i~~A~-~~~Gps~I~v~s 210 (299)
T PRK11865 179 VATASIGYPEDFMEKVKKAK-EVEGPAYIQVLQ 210 (299)
T ss_pred EEEEeCCCHHHHHHHHHHHH-hCCCCEEEEEEC
Confidence 8 566679999999999997 578999999863
No 130
>KOG1184|consensus
Probab=99.49 E-value=1.3e-13 Score=118.34 Aligned_cols=119 Identities=18% Similarity=0.141 Sum_probs=96.8
Q ss_pred ccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc-
Q psy786 47 FIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL- 125 (176)
Q Consensus 47 ~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~- 125 (176)
.....+|++|+.+|+++|+++|.+ +++||.++|||+||+ ..++++++.||+||.++|++||++|.++.....
T Consensus 409 ~~q~~wgsIG~svga~lG~a~a~~-----e~rvilfiGDGs~ql--TvQeiStmir~gl~~~if~~NN~GYTIE~~IH~~ 481 (561)
T KOG1184|consen 409 ESQMQWGSIGWSVGATLGYAQAAP-----EKRVILFIGDGSFQL--TVQEISTMIRWGLKPIIFLINNGGYTIEVEIHDG 481 (561)
T ss_pred EEEEEEeeccccchhhhhhhhccC-----CceEEEEecCcccee--eHHHHHHHHhcCCCcEEEEEeCCceEEEEeecCC
Confidence 355689999999999999999987 689999999999996 556699999999999999999999998754332
Q ss_pred ---ccccHHHHHHHhhcCceE-----EEecCCCHHHHHHHHHHHH-hhCCCcEEEEee
Q psy786 126 ---QHQTEVYRKRLDAFGFNA-----VVVDGHDVEHLVKVSSFKL-QKAIGCVWIQRG 174 (176)
Q Consensus 126 ---~~~~~~~~~~a~a~G~~~-----~~vdG~d~~~l~~al~~a~-~~~~~P~lI~~~ 174 (176)
....+||..+.++||..- .++ ..-+|+.++.+.+. +..+++.+||+.
T Consensus 482 ~Yn~I~~Wd~~~l~~afg~~~gk~~~~~v--~~~~e~~~~~~~~~~~~~~~i~liEv~ 537 (561)
T KOG1184|consen 482 PYNDIQNWDYTALLEAFGAGEGKYETHKV--RTEEELVEAIKDATFEKNDKIRLIEVI 537 (561)
T ss_pred CccccccchHHHHHHhhcCccceeEEeee--ccchHHHHHHhhhhhcccCceEEEEEe
Confidence 122479999999997543 334 35678888888887 345789999985
No 131
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.45 E-value=1.1e-12 Score=109.02 Aligned_cols=125 Identities=23% Similarity=0.371 Sum_probs=84.2
Q ss_pred hhcC--CCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhc-C---
Q psy786 31 RKID--SDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYY-K--- 104 (176)
Q Consensus 31 r~~~--~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~-~--- 104 (176)
|++. .++++|..|.+|+.-...|-+|++++.|.|+++-++ |..|+|++|||++.+|... +-+.+.++ +
T Consensus 116 ~~FS~PgGipSH~~p~tPGsIhEGGELGYaLshA~GA~~DnP-----dliv~~vvGDGEaETGplA-~sWh~~kflnP~~ 189 (379)
T PF09364_consen 116 RQFSFPGGIPSHVSPETPGSIHEGGELGYALSHAFGAVFDNP-----DLIVACVVGDGEAETGPLA-ASWHSNKFLNPAT 189 (379)
T ss_dssp HHBTSTTSB-SSS-TTSTT-S---SSTS-HHHHHHHHHTT-T-----T-EEEEEEETTGGGSHHHH-HHGGGGGSS-TTT
T ss_pred HhCCCCCCCccccCcCCCCccCcCcchhhHHHHHhhcccCCC-----CeEEEEEecCCcccCCccc-ccccccceeCccc
Confidence 5553 578999999999988889999999999999999766 8899999999999987533 34444433 2
Q ss_pred CCcEEEEEecCCCccccCcccc-cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHH
Q psy786 105 LDNLCVIFDINRLGQSEPTSLQ-HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFK 161 (176)
Q Consensus 105 lp~liiV~~nn~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a 161 (176)
-..|+-|+.=|+|.|+.++-.. .+..++.++++++|++.+.|+|+|++++...+..+
T Consensus 190 dGaVLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~a 247 (379)
T PF09364_consen 190 DGAVLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAA 247 (379)
T ss_dssp S-EEEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHH
T ss_pred CceeeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHH
Confidence 2345556667999999887532 34567999999999999999999988776655444
No 132
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=99.25 E-value=5.9e-12 Score=104.12 Aligned_cols=114 Identities=17% Similarity=0.147 Sum_probs=92.7
Q ss_pred CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccccc---
Q psy786 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQH--- 127 (176)
Q Consensus 51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~--- 127 (176)
..|++||.+|+|+|+..+.+ ++.++++.||-.||. ..|+|...+++|+|-+.+++||..++...+.+..+
T Consensus 417 qagplgwtipaalgv~~adp-----~r~vvalsgdydfqf--mieelavgaq~k~pyihv~vnnaylglirqaqr~f~md 489 (592)
T COG3960 417 QAGPLGWTIPAALGVCAADP-----KRNVVAISGDYDFQF--LIEELAVGAQFKIPYIHVLVNNAYLGLIRQAQRAFDMD 489 (592)
T ss_pred ccCCcccccchhhceeecCC-----CCceEEeecCchHHH--HHHHHhhhhcccCceEEEEecchHHHHHHHHHhcCCcc
Confidence 57999999999999998876 788999999999994 78899999999999888888877667654432211
Q ss_pred -----------------ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEe
Q psy786 128 -----------------QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQR 173 (176)
Q Consensus 128 -----------------~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~ 173 (176)
-..|-.+.++++|++.++|. +++++..|+++|.. +++.|+++|+
T Consensus 490 y~v~laf~nin~~~~~gygvdhv~v~eglgckairv~--~p~e~a~af~~a~~lm~eh~vpvvve~ 553 (592)
T COG3960 490 YCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQHRVPVVVEV 553 (592)
T ss_pred ceeeehhhccCCccccccCccceeehhccCceeEEec--ChHHhhHHHHHHHHHHHhcCCCeeeeh
Confidence 01345678999999999995 89999999999853 4688999985
No 133
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.23 E-value=3.8e-11 Score=105.71 Aligned_cols=159 Identities=23% Similarity=0.251 Sum_probs=117.3
Q ss_pred CCCCChHHHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEEC
Q psy786 5 EIPFRTNRSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVG 84 (176)
Q Consensus 5 ~~~~~~~~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~G 84 (176)
.-||++.+|+.......+... ...++||..-+...| ....+ ++-.||.++++|-|++++.. +++++++|
T Consensus 385 GCPHr~sf~~~k~~~~~~~~~---~~~DIGCytlg~~~P-~~~~d-~t~~mGssig~a~g~~~~~~------k~~va~iG 453 (640)
T COG4231 385 GCPHRPSFYALKKAAAELGGH---PSGDIGCYTLGILPP-LNTVD-TTTMMGSSIGIAGGLSFAST------KKIVAVIG 453 (640)
T ss_pred CCCCchhhHHHHHHHHhhCCC---CCCCcceeecccCCC-cchhh-hhhhccchhhhccccccccC------CceEEEec
Confidence 359999999988776322111 135678766666443 11233 35578998999999887653 68999999
Q ss_pred CCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc----------cccHHHHHHHhhcCceEEE-ecCCCHHH
Q psy786 85 DGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ----------HQTEVYRKRLDAFGFNAVV-VDGHDVEH 153 (176)
Q Consensus 85 DG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~----------~~~~~~~~~a~a~G~~~~~-vdG~d~~~ 153 (176)
|+.|.... ..+|.-|+..+.+++++|+||..-+|.+++... ....++.++.+++|...++ +|-.|.++
T Consensus 454 DsTF~HsG-i~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~ 532 (640)
T COG4231 454 DSTFFHSG-ILALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKE 532 (640)
T ss_pred cccccccC-cHHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcccccCCCccceeEhhHhhhhcCceeeeccCCcchHH
Confidence 99997543 346999999999999999998888888877543 2345788999999999885 57789999
Q ss_pred HHHHHHHHHhhCCCcEEEE-eeeC
Q psy786 154 LVKVSSFKLQKAIGCVWIQ-RGCC 176 (176)
Q Consensus 154 l~~al~~a~~~~~~P~lI~-~~~~ 176 (176)
+.+++++|++ ..+|.+|- .+.|
T Consensus 533 ~~~~~keale-~~gpsViiak~~C 555 (640)
T COG4231 533 LSEAIKEALE-VPGPSVIIAKREC 555 (640)
T ss_pred HHHHHHHHhc-CCCceEEEEcCcc
Confidence 9999999984 66776554 4444
No 134
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=99.15 E-value=4.5e-10 Score=92.48 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=93.5
Q ss_pred CcccchhHHHHHHHHHhchhcCCCcceEEEEECCCcc-CCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccccc---
Q psy786 52 TGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGES-AEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQH--- 127 (176)
Q Consensus 52 ~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~--- 127 (176)
.+..|-+.+.|.|+.+|++ +..||++.|||.. ..| ...+.-+.+.+.+++++++||.-|+.++.+....
T Consensus 69 hs~~gra~a~atGik~A~~-----~l~Viv~gGDG~~~dIG--~~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~ 141 (294)
T COG1013 69 HSLHGRAAAVATGIKLANP-----ALSVIVIGGDGDAYDIG--GNHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTPK 141 (294)
T ss_pred eeccCcchhhHHHHHHhcc-----CCeEEEEecchhHhhhh--hHHHHHHHHcCCCeEEEEECCeecccCCCccCCCCCC
Confidence 4667999999999999998 5689999999965 555 3458899999999999999999999876543211
Q ss_pred --------------ccHHHHHHHhhcCceEE-EecCCCHHHHHHHHHHHHhhCCCcEEEEe
Q psy786 128 --------------QTEVYRKRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKAIGCVWIQR 173 (176)
Q Consensus 128 --------------~~~~~~~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~~~P~lI~~ 173 (176)
...|...++-++|..++ ++.-.++.++.+.+++|+ +.+||.||++
T Consensus 142 G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~-~~~Gps~I~v 201 (294)
T COG1013 142 GAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAA-EHKGPSFIDV 201 (294)
T ss_pred CceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHH-hccCCeEEEE
Confidence 23488899999999888 664457999999999998 5679999997
No 135
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.14 E-value=3.8e-10 Score=103.60 Aligned_cols=123 Identities=20% Similarity=0.180 Sum_probs=98.8
Q ss_pred cccchhHHHHHHHHHhchhc-CC----CcceEEEEECCCcc-CCchHHHHHHHhhhcCCC--cEEEEEecCCCccccCcc
Q psy786 53 GSLGQGLSVAAGMAYVGKYF-DK----ASYRTYCLVGDGES-AEGSIWEALHFASYYKLD--NLCVIFDINRLGQSEPTS 124 (176)
Q Consensus 53 g~~G~~l~~AvG~A~a~~~~-~~----~~~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp--~liiV~~nn~~~~~~~~~ 124 (176)
+.+-.--|+.-|+..|.+-. +. -....|++.||++| .+|.+.|.|+++..++++ -+|+|+.||++++.+...
T Consensus 619 SHLEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~ 698 (1228)
T PRK12270 619 SHLEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPE 698 (1228)
T ss_pred hhhhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCcc
Confidence 44555567778888775421 11 23457889999997 699999999999999988 366777789999998876
Q ss_pred cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEeee
Q psy786 125 LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQRGC 175 (176)
Q Consensus 125 ~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~~~ 175 (176)
...+.....+++++++++++.|||+|++++.++.+.|++. -++|++||+-|
T Consensus 699 ~~Rss~y~td~ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvc 752 (1228)
T PRK12270 699 SSRSSEYATDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVC 752 (1228)
T ss_pred ccccchhhHHHHhhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 6665556678899999999999999999999999999873 37999999987
No 136
>KOG0451|consensus
Probab=99.04 E-value=1.8e-09 Score=94.10 Aligned_cols=124 Identities=16% Similarity=0.219 Sum_probs=97.4
Q ss_pred CcccchhHHHHHHHHHhchhcC-------------CCcceEEEEECCCcc-CCchHHHHHHHhh--hcCCCcEEEEEecC
Q psy786 52 TGSLGQGLSVAAGMAYVGKYFD-------------KASYRTYCLVGDGES-AEGSIWEALHFAS--YYKLDNLCVIFDIN 115 (176)
Q Consensus 52 ~g~~G~~l~~AvG~A~a~~~~~-------------~~~~~vv~~~GDG~~-~~G~~~eal~~a~--~~~lp~liiV~~nn 115 (176)
-+.+-..-|+|+|-+.+..... ++....+.+.||++| .+|.++|+++++. .+++.-.+.++.||
T Consensus 282 PSHLEAvNPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNN 361 (913)
T KOG0451|consen 282 PSHLEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNN 361 (913)
T ss_pred hhhhhccCchhhcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecc
Confidence 3556777789999887755321 011234556799999 5999999999876 45666667777889
Q ss_pred CCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEeee
Q psy786 116 RLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQRGC 175 (176)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~~~ 175 (176)
+.+..++.+...+.....+++++++.+++.|+|+||+++.+|-+-|+++ -++-+||+.-|
T Consensus 362 QvgfTtp~~rGRSs~ycsDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~C 424 (913)
T KOG0451|consen 362 QVGFTTPGDRGRSSAYCSDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNC 424 (913)
T ss_pred cccccCcccccccchhhhHHHHHhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHH
Confidence 9999988877776666788999999999999999999999999999874 36899999876
No 137
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=3.2e-09 Score=94.50 Aligned_cols=121 Identities=24% Similarity=0.377 Sum_probs=90.7
Q ss_pred HHhhhhhcCCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhc--
Q psy786 26 ELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYY-- 103 (176)
Q Consensus 26 ~l~~~r~~~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~-- 103 (176)
.+.+|+.. .++.+|..|.+||.-...|.+|+++..|.|+++-++ |..+.|++|||+...|...- -+.+.++
T Consensus 127 L~~qFs~P-gGi~SH~~petPGsIhEGGeLGy~l~ha~gAa~d~P-----dli~~~vvGDGeaetgplat-sWhs~kf~n 199 (793)
T COG3957 127 LFKQFSFP-GGIGSHVAPETPGSIHEGGELGYALSHAYGAAFDNP-----DLIVACVVGDGEAETGPLAT-SWHSNKFLN 199 (793)
T ss_pred HHHhccCC-CCcccccCCCCCCccCcCcchhHHHHHHHHhhcCCC-----CcEEEEEecccccccCcccc-ccccccccC
Confidence 33445544 479999999999987889999999999999999665 88999999999777654221 2222111
Q ss_pred --CCCcEEEEEecCCCccccCccccc-ccHHHHHHHhhcCceEEEecCCCHHH
Q psy786 104 --KLDNLCVIFDINRLGQSEPTSLQH-QTEVYRKRLDAFGFNAVVVDGHDVEH 153 (176)
Q Consensus 104 --~lp~liiV~~nn~~~~~~~~~~~~-~~~~~~~~a~a~G~~~~~vdG~d~~~ 153 (176)
+-..++-|+.-|+|.|+.++.... +..++.++++++|++.+.|+|+|+++
T Consensus 200 p~~dGavLPIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d 252 (793)
T COG3957 200 PARDGAVLPILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPAD 252 (793)
T ss_pred ccccCceeeEEEecceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHH
Confidence 222344455569999998876543 45679999999999999999988877
No 138
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=98.60 E-value=2.3e-07 Score=81.25 Aligned_cols=109 Identities=15% Similarity=0.065 Sum_probs=84.9
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc---------ccc
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT---------SLQ 126 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~---------~~~ 126 (176)
-..++-|+|++.+.. ++++.++||=||..-. ..|........|.+|||+|||+=+|-... +..
T Consensus 425 DG~vSTA~Gi~~a~~------~ptv~liGDLS~lhD~--NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe~~ 496 (566)
T COG1165 425 DGTVSTALGIARATQ------KPTVALIGDLSFLHDL--NGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPVFERL 496 (566)
T ss_pred chhHHHHhhhhhhcC------CceEEEEechhhhhcc--chHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcchHHHh
Confidence 334778999999765 5799999999997533 34666788889999999999998774211 111
Q ss_pred c---ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 127 H---QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 127 ~---~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
+ ...||+..++.||.++.+++ +.+++..+++.+. ...+-.+||++.
T Consensus 497 F~tPh~ldF~~la~~y~l~y~~~~--s~~~l~~~~~~~~-~~~g~~viEvkt 545 (566)
T COG1165 497 FGTPHGLDFAHLAATYGLEYHRPQ--SWDELGEALDQAW-RRSGTTVIEVKT 545 (566)
T ss_pred cCCCCCCCHHHHHHHhCccccccC--cHHHHHHHHhhhc-cCCCcEEEEEec
Confidence 1 13589999999999999986 8999999999985 456789999864
No 139
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=98.55 E-value=5.6e-07 Score=75.81 Aligned_cols=95 Identities=13% Similarity=0.034 Sum_probs=74.7
Q ss_pred ceEEEEECCCcc-CCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----------------ccccHHHHHHHhhc
Q psy786 77 YRTYCLVGDGES-AEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----------------QHQTEVYRKRLDAF 139 (176)
Q Consensus 77 ~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----------------~~~~~~~~~~a~a~ 139 (176)
..||++.|||.. ..|. +.+.-+.+.+.+++++|+||..|+..+.+.. .....|+..++.++
T Consensus 152 ~~v~v~gGDG~~ydIG~--~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~ 229 (365)
T cd03377 152 KSVWIIGGDGWAYDIGY--GGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY 229 (365)
T ss_pred cceEEEecchhhhccch--hhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence 589999999965 5553 4577778888889999999999998754321 11235888999999
Q ss_pred CceEE-Eec-CCCHHHHHHHHHHHHhhCCCcEEEEee
Q psy786 140 GFNAV-VVD-GHDVEHLVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 140 G~~~~-~vd-G~d~~~l~~al~~a~~~~~~P~lI~~~ 174 (176)
|..++ ++. +.++.++.+++++|+ +.+||.||++-
T Consensus 230 g~~YVA~~s~~~~~~~~~~~i~eA~-~~~Gps~I~v~ 265 (365)
T cd03377 230 GNVYVAQIALGANDNQTLKAFREAE-AYDGPSLIIAY 265 (365)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHh-cCCCCEEEEEE
Confidence 99888 553 358999999999997 57999999974
No 140
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=98.38 E-value=1.9e-06 Score=81.95 Aligned_cols=120 Identities=16% Similarity=0.139 Sum_probs=88.8
Q ss_pred CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc--cc
Q psy786 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ--HQ 128 (176)
Q Consensus 51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~--~~ 128 (176)
+.-.||.....++|.+.+.+ ++.|+.++|||.|.... .-+|.-|...+.+++++|++|.--.|.+++... .+
T Consensus 479 ~~~~MG~eg~~~~G~a~f~~-----~~hv~a~iGDgTffHSG-~~al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~~~ 552 (1165)
T PRK09193 479 TFTQMGGEGVPWIGQAPFTD-----EKHVFQNLGDGTYFHSG-LLAIRAAVAAGVNITYKILYNDAVAMTGGQPVDGGLS 552 (1165)
T ss_pred eeeccCCcchhhceeccccC-----CCcEEEEeccccchhcC-HHHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCcc
Confidence 55678999999999888644 46799999999997543 346889999999999999999999999887543 35
Q ss_pred cHHHHHHHhhcCceEEEecCCCHHHH-----------------HHHHHHHHhhCCCcEE-EEeeeC
Q psy786 129 TEVYRKRLDAFGFNAVVVDGHDVEHL-----------------VKVSSFKLQKAIGCVW-IQRGCC 176 (176)
Q Consensus 129 ~~~~~~~a~a~G~~~~~vdG~d~~~l-----------------~~al~~a~~~~~~P~l-I~~~~~ 176 (176)
..++++..++.|++.+.+-..|+... .+++++++...+|+++ |-...|
T Consensus 553 ~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~GvsViI~~q~C 618 (1165)
T PRK09193 553 VPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELREIPGVTVLIYDQTC 618 (1165)
T ss_pred hhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHhcCCCcEEEEEcCcC
Confidence 67899999999998885422345443 4566677644566644 444444
No 141
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=98.30 E-value=4.3e-06 Score=79.61 Aligned_cols=120 Identities=16% Similarity=0.155 Sum_probs=84.7
Q ss_pred CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccccc--c
Q psy786 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQH--Q 128 (176)
Q Consensus 51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~--~ 128 (176)
+.-.||.....++|.+.+.. +++|++++|||.|..... -+|.-|...+.+++++|++|.--.|.+++...- .
T Consensus 466 ~~~~MG~~g~~~~G~a~~~~-----~~~v~a~iGDgTf~HSG~-~al~~AV~~~~nit~~IL~N~~tAMTGgQp~~g~i~ 539 (1159)
T PRK13030 466 GLTQMGGEGVDWIGHAPFTE-----TKHVFQNLGDGTYFHSGS-LAIRQAVAAGANITYKILYNDAVAMTGGQPVDGSIS 539 (1159)
T ss_pred eeeccCccchhhceeccccC-----CCCEEEEeccchhhhcCH-HHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCCC
Confidence 34578888888899888754 467999999999975433 379899999999999999999999998876432 2
Q ss_pred cHHHHHHHhhcCceEEEecCCCHH----------------HHHHHHHHHHhhCCCcEE-EEeeeC
Q psy786 129 TEVYRKRLDAFGFNAVVVDGHDVE----------------HLVKVSSFKLQKAIGCVW-IQRGCC 176 (176)
Q Consensus 129 ~~~~~~~a~a~G~~~~~vdG~d~~----------------~l~~al~~a~~~~~~P~l-I~~~~~ 176 (176)
.+.+.+.+++.|++.+.|-..|+. +..+++++++...+++++ |....|
T Consensus 540 v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~~~~GvsViI~~q~C 604 (1159)
T PRK13030 540 VPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELRETPGVTVLIYDQTC 604 (1159)
T ss_pred HHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHHhcCCCcEEEEEcCcc
Confidence 344455888999988854212433 344566677644566644 444444
No 142
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=98.29 E-value=5.7e-06 Score=76.13 Aligned_cols=171 Identities=14% Similarity=0.092 Sum_probs=119.1
Q ss_pred CCCCChHHHHHHHHcCCCCHHHHhhhhhcC--CC-------CCCCC-CCCCC------ccccCCcccchhHHHHHHHHHh
Q psy786 5 EIPFRTNRSKAWAEAGLFPVSELKNLRKID--SD-------LEGHP-TPRLN------FIDVGTGSLGQGLSVAAGMAYV 68 (176)
Q Consensus 5 ~~~~~~~~ya~l~~~G~~~~e~l~~~r~~~--~~-------l~~~~-~~~~~------~~~~~~g~~G~~l~~AvG~A~a 68 (176)
.||||.-|.-..-..|.-++..+..|..-. .. ..|.. +..++ .+.+.-+.+-.--|+..|.+-|
T Consensus 234 GMaHRGRLNvL~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G~vRa 313 (906)
T COG0567 234 GMAHRGRLNVLVNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRA 313 (906)
T ss_pred cccccchHHHHHHHhCCCHHHHHHHhCCCCCCCCcccccccccccccccccCCCeeEEEecCCcchhhhhchhhhcchHh
Confidence 489999999999999987776666663210 00 01111 11111 1223446677778899999888
Q ss_pred chhcCC--C--cceEEEEECCCcc-CCchHHHHHHHhhh--cCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCc
Q psy786 69 GKYFDK--A--SYRTYCLVGDGES-AEGSIWEALHFASY--YKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGF 141 (176)
Q Consensus 69 ~~~~~~--~--~~~vv~~~GDG~~-~~G~~~eal~~a~~--~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~ 141 (176)
...... . ...-+.+.||.+| .+|.+.|.+++... +...-.+.|+-||+.+..+......+.+--.++|+.++.
T Consensus 314 ~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDvAKm~~a 393 (906)
T COG0567 314 KQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAKMIEA 393 (906)
T ss_pred hhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCCChhhccCC
Confidence 653211 1 1334599999999 59999999998875 445557777778998988775444444444567889999
Q ss_pred eEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEeee
Q psy786 142 NAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQRGC 175 (176)
Q Consensus 142 ~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~~~ 175 (176)
+++.|+|.||+++..+.+-|++. ..++++|+.-|
T Consensus 394 PifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvc 430 (906)
T COG0567 394 PIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVC 430 (906)
T ss_pred ceeecccCCchhhhhhHHHHHHHHhhcCCCeeeeccc
Confidence 99999999999999999988863 35899999876
No 143
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=98.11 E-value=1.5e-05 Score=75.97 Aligned_cols=119 Identities=14% Similarity=0.168 Sum_probs=84.2
Q ss_pred CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc--cc
Q psy786 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ--HQ 128 (176)
Q Consensus 51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~--~~ 128 (176)
+.-.||.....++|.+-+.+ +++|+.++|||.|..... -+|.-|...+.++++.|++|.--.|.+.+... ..
T Consensus 493 ~~~~MGgeg~~~~G~a~f~~-----~~hv~aniGDgTffHSG~-~alr~AV~~~~nit~kIL~N~avAMTGgQp~~G~~~ 566 (1186)
T PRK13029 493 GFSQMGGEGVAWIGQMPFSR-----RRHVFQNLGDGTYFHSGL-LAIRQAIAAGVNITYKILYNDAVAMTGGQPVDGVLT 566 (1186)
T ss_pred eeeccCcchhhheeecccCC-----CCCEEEEeccccchhcCH-HHHHHHHhcCCCEEEEEEeCcchhccCCCCCCCcCC
Confidence 34678888888888887654 467999999999975433 46889999999999999999999999877543 23
Q ss_pred cHHHHHHHhhcCceEEEe-cCCCHH-----------------HHHHHHHHHHhhCCCcE-EEEeeeC
Q psy786 129 TEVYRKRLDAFGFNAVVV-DGHDVE-----------------HLVKVSSFKLQKAIGCV-WIQRGCC 176 (176)
Q Consensus 129 ~~~~~~~a~a~G~~~~~v-dG~d~~-----------------~l~~al~~a~~~~~~P~-lI~~~~~ 176 (176)
.+.+....++.|++-+.| + .++. +..+++++++...++++ +|-...|
T Consensus 567 v~~i~~~~~a~GV~~v~vv~-d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~~q~C 632 (1186)
T PRK13029 567 VPQIARQVHAEGVRRIVVVT-DEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIYDQTC 632 (1186)
T ss_pred HHHHHHHHHhCCccEEEEeC-CCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEEcCcC
Confidence 345566889999988855 4 2342 33455666664445654 4444444
No 144
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.94 E-value=3.9e-05 Score=73.74 Aligned_cols=95 Identities=15% Similarity=0.100 Sum_probs=75.3
Q ss_pred ceEEEEECCCcc-CCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----------------ccccHHHHHHHhhc
Q psy786 77 YRTYCLVGDGES-AEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----------------QHQTEVYRKRLDAF 139 (176)
Q Consensus 77 ~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----------------~~~~~~~~~~a~a~ 139 (176)
+.||++.|||.. ..|. ..+.-+.+.+.++.++|+||..|+..+.+.. .....|+..++.++
T Consensus 952 ~sv~~~~GDG~~~diG~--~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGY--GGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccCc--cchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 479999999965 5553 4588888899999999999999988754321 12245888999999
Q ss_pred CceEE-Eec-CCCHHHHHHHHHHHHhhCCCcEEEEee
Q psy786 140 GFNAV-VVD-GHDVEHLVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 140 G~~~~-~vd-G~d~~~l~~al~~a~~~~~~P~lI~~~ 174 (176)
|..++ ++. +.++.++.+++++|. +.+||.+|++-
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~-~~~G~s~i~~~ 1065 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAE-AYDGPSIVIAY 1065 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHH-cCCCCEEEEEE
Confidence 99888 664 568999999999996 67899999874
No 145
>KOG0450|consensus
Probab=97.67 E-value=0.00013 Score=65.65 Aligned_cols=124 Identities=14% Similarity=0.209 Sum_probs=89.3
Q ss_pred CcccchhHHHHHHHHHhchhcCC----CcceEEEEECCCcc-CCchHHHHHHHhhh--cCCCcEEEEEecCCCccccCcc
Q psy786 52 TGSLGQGLSVAAGMAYVGKYFDK----ASYRTYCLVGDGES-AEGSIWEALHFASY--YKLDNLCVIFDINRLGQSEPTS 124 (176)
Q Consensus 52 ~g~~G~~l~~AvG~A~a~~~~~~----~~~~vv~~~GDG~~-~~G~~~eal~~a~~--~~lp~liiV~~nn~~~~~~~~~ 124 (176)
-+.+-..=|+.+|--.|..+..+ ....-|.+.||++| .+|.+.|.+.+... |--.-.|.|+-||+.+..+...
T Consensus 373 PSHLEA~DPVV~GKtrA~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR 452 (1017)
T KOG0450|consen 373 PSHLEAVDPVVMGKTRAEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPR 452 (1017)
T ss_pred chhhcccCceeechHHHHHHhccccccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcc
Confidence 35566667777887777655422 23457899999999 58988887655432 2222367788889999887655
Q ss_pred cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEeee
Q psy786 125 LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQRGC 175 (176)
Q Consensus 125 ~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~~ 175 (176)
..++.+--.++|++.+.+.+.|+++|+|++.-+++-|.+ .-.+-++|++-|
T Consensus 453 ~aRSspYcTDvar~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVc 506 (1017)
T KOG0450|consen 453 FARSSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVC 506 (1017)
T ss_pred cccCCCCchhHHHHhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEEE
Confidence 444444456788999999999999999999999988854 235788888765
No 146
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=97.06 E-value=0.011 Score=43.61 Aligned_cols=106 Identities=15% Similarity=0.024 Sum_probs=61.7
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEE-CCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHH
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLV-GDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~-GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~ 134 (176)
..+..+|.|.+++.. ..-+++.. |=|..+ ..+++..|...++|++++.-+-......... ....|...
T Consensus 44 ~~A~~~A~g~~~~~~-----~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~---~q~~d~~~ 112 (155)
T cd07035 44 QGAVGMADGYARATG-----KPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGA---FQEIDQVA 112 (155)
T ss_pred HHHHHHHHHHHHHHC-----CCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCccccccCCc---ccccCHHH
Confidence 445567778877653 12244444 444443 5678999999999966555443333222111 11123445
Q ss_pred HHhhcCceEEEecCCCHHHHHHHHHHHHhhC----CCcEEEEee
Q psy786 135 RLDAFGFNAVVVDGHDVEHLVKVSSFKLQKA----IGCVWIQRG 174 (176)
Q Consensus 135 ~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~----~~P~lI~~~ 174 (176)
+++.+--...+++ +++++.+.+++|++.+ ++|+.|++.
T Consensus 113 ~~~~~~~~~~~i~--~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 113 LFRPITKWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred HHHHHhceEEEcC--CHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 5555544456775 7778887777777532 589999863
No 147
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.96 E-value=0.0051 Score=46.55 Aligned_cols=106 Identities=14% Similarity=0.063 Sum_probs=62.7
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEE--CCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHH
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLV--GDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYR 133 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~--GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~ 133 (176)
..+..+|.|.+.+.. ++.+|++ |=|.++ ..-++..|...+.|++++.-+-...... . .......|..
T Consensus 49 ~~A~~~A~g~ar~~g------~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~-~-~~~q~~~d~~ 117 (172)
T PF02776_consen 49 QGAAFMADGYARATG------RPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRPSAGEG-R-GAFQQEIDQQ 117 (172)
T ss_dssp HHHHHHHHHHHHHHS------SEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESSGGGTT-T-TSTTSSTHHH
T ss_pred chhHHHHHHHHHhhc------cceEEEeecccchHH---HHHHHhhcccceeeEEEEecccchhhhc-c-cccccchhhc
Confidence 344557778777653 3444444 444444 3456888889999966555543333333 1 1111134777
Q ss_pred HHHhhcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEee
Q psy786 134 KRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQRG 174 (176)
Q Consensus 134 ~~a~a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~~ 174 (176)
.+++.+.-...+++ +++++.+++++|++ ..++|+.|++-
T Consensus 118 ~~~~~~~k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 118 SLFRPVTKWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp HHHGGGSSEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred chhccccchhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence 88999987777885 55555555555543 34799999873
No 148
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=96.85 E-value=0.021 Score=42.45 Aligned_cols=105 Identities=14% Similarity=0.063 Sum_probs=61.6
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~ 135 (176)
..+..+|-|.+.+.+ +.++...|-|..+ ....|..|...+.|+|+++-+......... ...+...+...+
T Consensus 51 ~~A~~~A~g~~r~~~------~v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~-~~~~~~~~~~~~ 120 (160)
T cd07034 51 HAAAEAAIGASAAGA------RAMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRPGPSTGLP-KPDQSDLMAARY 120 (160)
T ss_pred HHHHHHHHHHHhhCC------cEEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCCCCCCCCC-CcCcHHHHHHHh
Confidence 444556667776432 2455566777765 456788888889996666555443333221 111112334445
Q ss_pred HhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEe
Q psy786 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQR 173 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~ 173 (176)
++. -+...++. +++++.+.+++|++ ..++|++|-.
T Consensus 121 ~~~-~~~~~~~~--~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 121 GGH-PWPVLAPS--SVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred CCC-CEEEEeCC--CHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 544 45566674 78888777777765 2358998864
No 149
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=96.85 E-value=0.021 Score=41.76 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEE-CCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLV-GDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~-GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~ 135 (176)
.+...|.|++.+.. +.++.+. |.|... ..+.+..|...++|+ ++|....+...... ......+...+
T Consensus 46 ~a~~~A~G~a~~~~------~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pv-l~i~~~~~~~~~~~--~~~q~~~~~~~ 113 (154)
T cd06586 46 GAAGAAAGYARAGG------PPVVIVTSGTGLLN---AINGLADAAAEHLPV-VFLIGARGISAQAK--QTFQSMFDLGM 113 (154)
T ss_pred HHHHHHHHHHHhhC------CEEEEEcCCCcHHH---HHHHHHHHHhcCCCE-EEEeCCCChhhhcc--CcccccCHHHH
Confidence 34556777777542 3444444 787764 556788888899994 44444344322111 11112334556
Q ss_pred HhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEee
Q psy786 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQRG 174 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~ 174 (176)
++.+..-.+.+. ++++..+.+.+|++ ..++|++|++.
T Consensus 114 ~~~~~~~~~~~~--~~~~~~~~~~~a~~~a~~~~gPv~l~ip 153 (154)
T cd06586 114 YRSIPEANISSP--SPAELPAGIDHAIRTAYASQGPVVVRLP 153 (154)
T ss_pred HHHhhheEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence 777765555553 45554444444443 23789999763
No 150
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=96.82 E-value=0.019 Score=42.94 Aligned_cols=100 Identities=16% Similarity=0.108 Sum_probs=62.3
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHH-HhhhcCCCcEEEEEecCCCcc--ccCcccccccHHHHH
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALH-FASYYKLDNLCVIFDINRLGQ--SEPTSLQHQTEVYRK 134 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~-~a~~~~lp~liiV~~nn~~~~--~~~~~~~~~~~~~~~ 134 (176)
.++.|.|+|+.- -++++... ..|.. ...+.+. .++.+++|+ +++....+++. .+.+.. +..++ .
T Consensus 51 ~vg~A~GlA~~G------~~pi~~~~--~~f~~-ra~dqi~~~~a~~~~pv-~~~~~~~g~~~~~~G~tH~--~~~~~-a 117 (156)
T cd07033 51 MVGIAAGLALHG------LKPFVSTF--SFFLQ-RAYDQIRHDVALQNLPV-KFVGTHAGISVGEDGPTHQ--GIEDI-A 117 (156)
T ss_pred HHHHHHHHHHCC------CeEEEEEC--HHHHH-HHHHHHHHHHhccCCCe-EEEEECCcEecCCCCcccc--hHHHH-H
Confidence 355677888642 24555555 45533 4566676 888899995 45566555544 332221 12333 3
Q ss_pred HHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEe
Q psy786 135 RLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQR 173 (176)
Q Consensus 135 ~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~ 173 (176)
+.+.+ |++.+.- .|+++++..+++|++ .++|++|-.
T Consensus 118 ~~~~iPg~~v~~P--s~~~~~~~ll~~a~~-~~~P~~irl 154 (156)
T cd07033 118 LLRAIPNMTVLRP--ADANETAAALEAALE-YDGPVYIRL 154 (156)
T ss_pred HhcCCCCCEEEec--CCHHHHHHHHHHHHh-CCCCEEEEe
Confidence 55555 7777654 489999999999984 567988754
No 151
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=96.63 E-value=0.072 Score=40.01 Aligned_cols=105 Identities=15% Similarity=0.120 Sum_probs=63.7
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhh-hcCCCcEEEEEecCCCccccCcccccccHHHHH
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFAS-YYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~-~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~ 134 (176)
+.+.+.|.|..++. .+.++|+.+=|-. ....+|..|. ..++|+++++-.-+.++...+.+.... .--..
T Consensus 44 e~aa~~aAg~~~~~------~~~~v~~~~sG~g---n~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g-~~~~~ 113 (157)
T TIGR03845 44 EEGVGICAGAYLAG------KKPAILMQSSGLG---NSINALASLNKTYGIPLPILASWRGVYKEKIPAQIPMG-RATPK 113 (157)
T ss_pred HHHHHHHHHHHHhc------CCcEEEEeCCcHH---HHHHHHHHHHHcCCCCEEEEEeccCCCCCCCccccchh-hhhHH
Confidence 66677777877653 3567888888833 3566788999 999996666533333222211111111 11122
Q ss_pred HHhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEe
Q psy786 135 RLDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQR 173 (176)
Q Consensus 135 ~a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~ 173 (176)
..+..+++...++ +++++ +++++|++ ..++|+.|-+
T Consensus 114 ~l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~ 152 (157)
T TIGR03845 114 LLDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALL 152 (157)
T ss_pred HHHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEE
Confidence 3455677777885 67777 77777764 2458987754
No 152
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=96.44 E-value=0.079 Score=39.94 Aligned_cols=103 Identities=13% Similarity=-0.028 Sum_probs=60.9
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA 138 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a 138 (176)
.-.|-|.+.+.. + -..+++..|-|.++ ..-++..|...++|+|++ .-+........ ......|..++++.
T Consensus 51 ~~mA~gyar~tg---~-~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I-~g~~~~~~~~~--~~~q~~d~~~~~~~ 120 (164)
T cd07039 51 AFAASAEAKLTG---K-LGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAI-AGQVPTDELGT--DYFQEVDLLALFKD 120 (164)
T ss_pred HHHHHHHHHHhC---C-CEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEE-ecCCcccccCC--CCCcccCHHHHHHH
Confidence 335667776543 1 23455555777776 345788999999995544 32222221111 11112356677888
Q ss_pred cCceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEe
Q psy786 139 FGFNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQR 173 (176)
Q Consensus 139 ~G~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~ 173 (176)
+--...+++ +++++.+++++|++. .++|+.|++
T Consensus 121 ~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~i 156 (164)
T cd07039 121 VAVYNETVT--SPEQLPELLDRAIRTAIAKRGVAVLIL 156 (164)
T ss_pred hhcEEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 866666775 676666666666542 359999986
No 153
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=96.31 E-value=0.094 Score=39.42 Aligned_cols=108 Identities=16% Similarity=0.052 Sum_probs=60.5
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc--cccc---ccH
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT--SLQH---QTE 130 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~--~~~~---~~~ 130 (176)
..+.-+|-|.+.+.+ -..+++..|-|..+ ..-++..|...+.|+|++.-+...-...... +... ..+
T Consensus 45 ~~A~~mA~gyar~t~-----~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~ 116 (162)
T cd07038 45 LNAGYAADGYARVKG-----LGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFD 116 (162)
T ss_pred HHHHHHHHHHHHhhC-----CEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchH
Confidence 334446667776543 22344444666665 4457889999999965554332211111110 0000 112
Q ss_pred HHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEe
Q psy786 131 VYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQR 173 (176)
Q Consensus 131 ~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~ 173 (176)
|..++++.+--...++. +++++.+.+++|++ ..++|++|++
T Consensus 117 d~~~~~~~~tk~~~~v~--~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 117 VFLKMFEEITCAAARLT--DPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHHHHHhheeEEEEeC--CHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 45678888766666775 66666666666654 2358999986
No 154
>PRK07524 hypothetical protein; Provisional
Probab=95.99 E-value=0.078 Score=47.16 Aligned_cols=110 Identities=16% Similarity=0.035 Sum_probs=66.8
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~ 135 (176)
..+.-+|-|.|..... -..+++..|-|.++ ..-++..|...+.|+|++.-+.............+...|...+
T Consensus 49 ~~A~~mAdgyar~tg~----~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l 121 (535)
T PRK07524 49 QGAGFMADGYARVSGK----PGVCFIITGPGMTN---IATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAM 121 (535)
T ss_pred HHHHHHHHHHHHHhCC----CeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHH
Confidence 3344567777766531 23455556777776 3457999999999966665443322221110011111356678
Q ss_pred HhhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG 174 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~ 174 (176)
++.+--...+++ +++++.+.+++|++. .+||+.|++-
T Consensus 122 ~~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (535)
T PRK07524 122 VAGVAAFSHTLM--SAEDLPEVLARAFAVFDSARPRPVHIEIP 162 (535)
T ss_pred hhhhceeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 888876667775 787777777777642 3589999863
No 155
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=95.88 E-value=0.19 Score=41.08 Aligned_cols=85 Identities=22% Similarity=0.239 Sum_probs=60.8
Q ss_pred eEEEEECCCc--cCCchHHHHHHHhhhcCCCcEEEEEecC--CCccccCcccc---cccHHHHHHHhhcCceEEEecCCC
Q psy786 78 RTYCLVGDGE--SAEGSIWEALHFASYYKLDNLCVIFDIN--RLGQSEPTSLQ---HQTEVYRKRLDAFGFNAVVVDGHD 150 (176)
Q Consensus 78 ~vv~~~GDG~--~~~G~~~eal~~a~~~~lp~liiV~~nn--~~~~~~~~~~~---~~~~~~~~~a~a~G~~~~~vdG~d 150 (176)
+++.++.||. +.++.....+.-|.+.++-++++++++. +-+|....+.. .....+...++.|+++++.|= +|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~ 244 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD 244 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence 7999999999 7777665667778888998788888876 33443211110 011167788999999999652 48
Q ss_pred HHHHHHHHHHHHh
Q psy786 151 VEHLVKVSSFKLQ 163 (176)
Q Consensus 151 ~~~l~~al~~a~~ 163 (176)
+++|.+.+..++.
T Consensus 245 ~~~lp~~l~~~lr 257 (266)
T cd01460 245 LNQLPSVLSDALR 257 (266)
T ss_pred hhHhHHHHHHHHH
Confidence 9999888887764
No 156
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=95.86 E-value=0.11 Score=44.20 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=60.2
Q ss_pred cchhHHHHHHHHHhchhcCCCcceEEEE--ECCCccCCchHHHHHHHhhhcCCCcEEEEEecCC-Cccc-cCcccccccH
Q psy786 55 LGQGLSVAAGMAYVGKYFDKASYRTYCL--VGDGESAEGSIWEALHFASYYKLDNLCVIFDINR-LGQS-EPTSLQHQTE 130 (176)
Q Consensus 55 ~G~~l~~AvG~A~a~~~~~~~~~~vv~~--~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~-~~~~-~~~~~~~~~~ 130 (176)
=|.++++|.|+.++.. .+.+|.+ .|=|-.- ...-+|.....+++|++++| -..+ ++.. .+++.... .
T Consensus 35 E~~av~iaaG~~latG-----~~~~v~mQnSGlGn~v--N~l~SL~~~~~y~iP~l~~i-~~RG~~g~~depqh~~~G-~ 105 (361)
T TIGR03297 35 EGAAVGLAAGAYLATG-----KRAAVYMQNSGLGNAV--NPLTSLADTEVYDIPLLLIV-GWRGEPGVHDEPQHVKQG-R 105 (361)
T ss_pred chHHHHHHHHHHHhcC-----CccEEEEecCchhhhh--hHHHhhccccccCcCeeEEE-ecCCCCCCCCCchhhHHh-H
Confidence 4888999999999843 2345554 2333111 01112333567899965554 4344 3322 12222222 3
Q ss_pred HHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEe
Q psy786 131 VYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQR 173 (176)
Q Consensus 131 ~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~ 173 (176)
-..++.+++++++..++ .+.++..+++.+|++ ..++|+.|-+
T Consensus 106 ~t~~lL~~~~i~~~~~~-~~~~~~~~~~~~a~~~~~~~~~p~a~l~ 150 (361)
T TIGR03297 106 ITLSLLDALEIPWEVLS-TDNDEALAQIERALAHALATSRPYALVV 150 (361)
T ss_pred HHHHHHHHcCCCEEECC-CChHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 45678999999999984 244455444544443 3567865543
No 157
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=95.86 E-value=0.085 Score=39.85 Aligned_cols=106 Identities=15% Similarity=0.027 Sum_probs=57.4
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
+.-+|-|.+.+... -..+++..|-|..+ ..-++..|...+.|+|++ .-+-....... ..+...|...+++
T Consensus 47 A~~mAdgyar~sg~----~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i-~g~~~~~~~~~--~~~q~~d~~~l~~ 116 (162)
T cd07037 47 AAFFALGLAKASGR----PVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVL-TADRPPELRGT--GANQTIDQVGLFG 116 (162)
T ss_pred HHHHHHHHHHhhCC----CEEEEECCchHHHH---HhHHHHHHHhcCCCEEEE-ECCCCHHhcCC--CCCcccchhhhcc
Confidence 34467777766531 22344444666665 345688999999995444 43222221111 1111234455666
Q ss_pred hcCceEEEe-cCCC-------HHHHHHHHHHHHhhCCCcEEEEe
Q psy786 138 AFGFNAVVV-DGHD-------VEHLVKVSSFKLQKAIGCVWIQR 173 (176)
Q Consensus 138 a~G~~~~~v-dG~d-------~~~l~~al~~a~~~~~~P~lI~~ 173 (176)
.+--...++ +..+ ++.+.+|++.|....+||++|++
T Consensus 117 ~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~i 160 (162)
T cd07037 117 DYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNL 160 (162)
T ss_pred ceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEec
Confidence 664444555 2233 45566666666533469999986
No 158
>PRK07064 hypothetical protein; Provisional
Probab=95.70 E-value=0.12 Score=45.99 Aligned_cols=108 Identities=17% Similarity=0.002 Sum_probs=63.2
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
+.-+|-|.+.+... -..+++..|-|.++ ..-++..|...+.|+|++.-+-+...+...........|...+++
T Consensus 53 A~~~A~gyar~tg~----~~v~~~t~GpG~~N---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~ 125 (544)
T PRK07064 53 AVNMADAHARVSGG----LGVALTSTGTGAGN---AAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLR 125 (544)
T ss_pred HHHHHHHHHHhcCC----CeEEEeCCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhh
Confidence 34467787776531 23455566888886 445788999999996555433222111111000011235667777
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG 174 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~ 174 (176)
.+=-...+++ +++++.+++++|++. .+||+.|++-
T Consensus 126 ~~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 164 (544)
T PRK07064 126 AVSKAAFRVR--SAETALATIREAVRVALTAPTGPVSVEIP 164 (544)
T ss_pred hhcceEEEeC--CHHHHHHHHHHHHHHhccCCCCcEEEEeC
Confidence 7755566775 677766666666542 3699999863
No 159
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.39 E-value=0.18 Score=45.34 Aligned_cols=105 Identities=11% Similarity=-0.029 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a 136 (176)
.+.-+|-|.+..... -..+++..|-|.++ ..-++..|...+.|+|++.-+-..... + ...+...|...++
T Consensus 53 ~A~~mAdgYar~tg~----~gv~~~t~GPG~~n---~l~gi~~A~~~~~Pvl~i~G~~~~~~~-~--~~~~q~~d~~~l~ 122 (574)
T PRK07979 53 AAVHMADGLARATGE----VGVVLVTSGPGATN---AITGIATAYMDSIPLVVLSGQVATSLI-G--YDAFQECDMVGIS 122 (574)
T ss_pred HHHHHHHHHHHHhCC----ceEEEECCCccHhh---hHHHHHHHhhcCCCEEEEECCCChhcc-C--CCCCceecHHHHh
Confidence 334467777776531 24566667888876 345788999999996655433222111 1 1112224666778
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR 173 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~ 173 (176)
+.+=-...+|+ +++++.+.+++|+.. .+||+.|++
T Consensus 123 ~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPv~l~i 161 (574)
T PRK07979 123 RPVVKHSFLVK--QTEDIPQVLKKAFWLAASGRPGPVVVDL 161 (574)
T ss_pred hcccceEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEc
Confidence 87755566775 788888888877642 358999986
No 160
>PRK08266 hypothetical protein; Provisional
Probab=95.32 E-value=0.2 Score=44.61 Aligned_cols=107 Identities=16% Similarity=-0.016 Sum_probs=62.2
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
+.-+|.|.+..... -..+++..|-|.++ ..-++..|...+.|+|++.-+-............+...|...+++
T Consensus 55 A~~~A~gyar~tg~----~~v~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~ 127 (542)
T PRK08266 55 AGYMAFGYARSTGR----PGVCSVVPGPGVLN---AGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLR 127 (542)
T ss_pred HHHHHHHHHHHhCC----CeEEEECCCCcHHH---HHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHh
Confidence 34467777776531 12444555888886 345788999999995555432121111111000111135667788
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR 173 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~ 173 (176)
.+--...+++ +++++.+.+++|++. ..||+.|++
T Consensus 128 ~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~i 165 (542)
T PRK08266 128 SFTKWAERIE--HPSEAPALVAEAFQQMLSGRPRPVALEM 165 (542)
T ss_pred hhcceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEe
Confidence 7755566775 677766666666542 358999986
No 161
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=95.29 E-value=0.27 Score=42.11 Aligned_cols=104 Identities=12% Similarity=0.084 Sum_probs=63.6
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHH-H
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYR-K 134 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~-~ 134 (176)
-.++.+|+|++++= .++++.+.=+++. ..+|.+.+++-.++|+++++.+.-+-+..-++... ..|+. .
T Consensus 58 ~aA~~~a~GAs~aG-------~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~~~~--q~D~~~~ 126 (376)
T PRK08659 58 IASMAAVIGASWAG-------AKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRGGPSTGQPTKPA--QGDMMQA 126 (376)
T ss_pred HHHHHHHHhHHhhC-------CCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecCCCCCCCCCCcC--cHHHHHH
Confidence 45577899999874 4677777666665 36788999998899977777765432211111111 12332 2
Q ss_pred HHhhc---CceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEE
Q psy786 135 RLDAF---GFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQ 172 (176)
Q Consensus 135 ~a~a~---G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~ 172 (176)
+.-++ +|-.+.. .|++|..+....|++ +.+-|+++-
T Consensus 127 ~~~~hgd~~~ivl~p--~~~QEa~d~~~~Af~lAE~~~~PViv~ 168 (376)
T PRK08659 127 RWGTHGDHPIIALSP--SSVQECFDLTIRAFNLAEKYRTPVIVL 168 (376)
T ss_pred hcccCCCcCcEEEeC--CCHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 22233 3544443 589888888877765 245788764
No 162
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=95.14 E-value=0.39 Score=40.76 Aligned_cols=103 Identities=14% Similarity=0.141 Sum_probs=65.2
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~ 135 (176)
-.++..|+|++++- .++++.+.+.++. ..+|.+..|+-..+|+++++++ .. +-+... .+....|....
T Consensus 58 ~aA~~~a~GAs~aG-------~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~-R~-~p~~g~-t~~eq~D~~~~ 125 (352)
T PRK07119 58 VAAINMVYGAAATG-------KRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIM-RG-GPGLGN-IQPSQGDYFQA 125 (352)
T ss_pred HHHHHHHHHHHhhC-------CCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEec-cC-CCCCCC-CcchhHHHHHH
Confidence 34577899999874 4799999999987 4789999999999996665554 33 221111 11111233211
Q ss_pred Hh-----hcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEE
Q psy786 136 LD-----AFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQ 172 (176)
Q Consensus 136 a~-----a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~ 172 (176)
.+ -++|..+.. .|++|.++...+|++ +.+-|+++-
T Consensus 126 ~~~~ghgd~~~~vl~p--~~~qEa~d~~~~Af~lAE~~~~PViv~ 168 (352)
T PRK07119 126 VKGGGHGDYRLIVLAP--SSVQEMVDLTMLAFDLADKYRNPVMVL 168 (352)
T ss_pred HhcCCCCCcceEEEeC--CCHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 11 234555544 589988888777765 345788764
No 163
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=95.02 E-value=0.39 Score=36.42 Aligned_cols=99 Identities=12% Similarity=0.053 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHH-HHhhhc--------CCCcEEEEEecCCCccccCccccc
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEAL-HFASYY--------KLDNLCVIFDINRLGQSEPTSLQH 127 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal-~~a~~~--------~lp~liiV~~nn~~~~~~~~~~~~ 127 (176)
..++.|.|+|+.- .++++.+.=+.|.. ..+|-+ +.++.+ ++| ++++....+++..+.+ .
T Consensus 55 ~~vg~AaGlA~~G-------~~pi~~~~~a~Fl~-ra~dQi~~~~a~~~~~~~~~~~~p-v~i~~~~gg~~~~G~t---h 122 (167)
T cd07036 55 GIVGLAVGAAMNG-------LRPIVEIMFADFAL-PAFDQIVNEAAKLRYMSGGQFKVP-IVIRGPNGGGIGGGAQ---H 122 (167)
T ss_pred HHHHHHHHHHHcC-------CEEEEEeehHHHHH-HHHHHHHHHHHHHHHhcCCCccCC-EEEEEeCCCCCCcChh---h
Confidence 3456677777742 34555444455543 344444 333333 588 4555666665543433 2
Q ss_pred ccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786 128 QTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI 171 (176)
Q Consensus 128 ~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI 171 (176)
...+ ..+.+++ |+.++.- .|+.+.+..++.++ +.++|+++
T Consensus 123 s~~~-~a~lr~iPg~~V~~P--sd~~e~~~~l~~~~-~~~~P~~~ 163 (167)
T cd07036 123 SQSL-EAWFAHIPGLKVVAP--STPYDAKGLLKAAI-RDDDPVIF 163 (167)
T ss_pred hhhH-HHHHhcCCCCEEEee--CCHHHHHHHHHHHH-hCCCcEEE
Confidence 2334 4567777 8888765 38999999999998 46789876
No 164
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=94.97 E-value=0.34 Score=43.27 Aligned_cols=107 Identities=12% Similarity=-0.060 Sum_probs=64.4
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
+.-+|-|.+..... -..+++..|-|.++ ..-++..|...+.|+|++.-........ .....+...|...+++
T Consensus 52 A~~mAdgyar~tg~----~gv~~~t~GPG~~N---~~~gia~A~~~~~Pvl~I~G~~~~~~~~-~~~~~~q~~d~~~~~~ 123 (554)
T TIGR03254 52 AGYAAAAAGFLTQK----PGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSERHIVD-LQQGDYEEMDQLAAAK 123 (554)
T ss_pred HHHHHHHHHHHhCC----CEEEEEccCccHHh---HHHHHHHHHhcCCCEEEEEccCCccccc-cCCCCcchhhHHHHhh
Confidence 34467777766531 23455555888887 3457999999999966665432221110 0011122246677888
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEee
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQRG 174 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~~ 174 (176)
.+--...+++ +++++.+.+++|++ ..+||+.|++-
T Consensus 124 ~vtk~~~~v~--~~~~~~~~i~rA~~~A~~~~pGPV~l~iP 162 (554)
T TIGR03254 124 PFAKAAYRVL--RAEDIGIGIARAIRTAVSGRPGGVYLDLP 162 (554)
T ss_pred hhheeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 8766677775 67776666666654 23588999874
No 165
>PRK08611 pyruvate oxidase; Provisional
Probab=94.94 E-value=0.26 Score=44.35 Aligned_cols=104 Identities=13% Similarity=0.023 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
+.-+|.|.+.+... -..+++..|-|.++ ..-++..|...+.|+|++.-+-... ..+. ..+...|..++++
T Consensus 55 A~~mAdgyar~tg~----~gv~~~t~GPG~~N---~l~gla~A~~~~~Pvl~ItG~~~~~-~~~~--~~~q~~d~~~l~~ 124 (576)
T PRK08611 55 AALAAAAYAKLTGK----IGVCLSIGGPGAIH---LLNGLYDAKMDHVPVLALAGQVTSD-LLGT--DFFQEVNLEKMFE 124 (576)
T ss_pred HHHHHHHHHHHhCC----ceEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccc-ccCC--CCccccCHHHHhh
Confidence 34467777765431 23455555888886 3457889999999965554332222 1111 1111235677888
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEe
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQR 173 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~ 173 (176)
.+--...+++ +++++.+++++|+.. .+||+.|++
T Consensus 125 ~itk~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~i 161 (576)
T PRK08611 125 DVAVYNHQIM--SAENLPEIVNQAIRTAYEKKGVAVLTI 161 (576)
T ss_pred cccceeEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEe
Confidence 7765566775 777777766666542 369999986
No 166
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.89 E-value=0.32 Score=43.69 Aligned_cols=104 Identities=13% Similarity=-0.006 Sum_probs=68.3
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
+.-+|-|.|.... .-..+++..|-|..+ ..-.|.+|..-+.|+|++.-+-....+. ...+...|...+++
T Consensus 51 Aa~mAdgyar~TG----kpgV~~~tsGPGatN---~~tgla~A~~d~~Pll~itGqv~~~~~g---~~afQe~D~~~l~~ 120 (550)
T COG0028 51 AAFAADGYARATG----KPGVCLVTSGPGATN---LLTGLADAYMDSVPLLAITGQVPTSLIG---TDAFQEVDQVGLFR 120 (550)
T ss_pred HHHHHHHHHHHcC----CCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCccccccC---cchhhhcchhhHhh
Confidence 3446777776653 235788889999997 4457999999999965553211111111 11222347777888
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR 173 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~ 173 (176)
.+=-..++|. +++++.+.+++|++. ..||++|++
T Consensus 121 p~tk~~~~v~--~~~~ip~~i~~Af~~A~sgrpGpv~i~i 158 (550)
T COG0028 121 PITKYNFEVR--SPEDIPEVVARAFRIALSGRPGPVVVDL 158 (550)
T ss_pred hhheeEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 8866667775 888888888888752 248999985
No 167
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=94.84 E-value=0.26 Score=44.37 Aligned_cols=103 Identities=17% Similarity=0.073 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHH-H
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK-R 135 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~-~ 135 (176)
.++..++|++++= .++++.+-=.++. ...|.|.+|....+|+++++++.-+-+..-++... ..|+.. +
T Consensus 248 aA~~~a~GAs~aG-------~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~gpstg~~t~~e--q~D~~~~~ 316 (562)
T TIGR03710 248 AAINMAIGASYAG-------ARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRGGPSTGLPTKTE--QSDLLFAL 316 (562)
T ss_pred HHHHHHHhHHhcC-------CceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccCCCCCCCCCCcc--HHHHHHHh
Confidence 4577888888874 4677777767776 46899999999999976666665433221112211 223222 2
Q ss_pred Hhh---cCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEE
Q psy786 136 LDA---FGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQ 172 (176)
Q Consensus 136 a~a---~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~ 172 (176)
.-+ ++|..+.. .|++|..+...+|+. +.+-|+++-
T Consensus 317 ~~~hgd~~~ivl~p--~~~qEa~d~~~~Af~lAe~~~~PViv~ 357 (562)
T TIGR03710 317 YGGHGEFPRIVLAP--GSPEECFYLAIEAFNLAEKYQTPVIVL 357 (562)
T ss_pred cCCCCCcCceEEcC--CCHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 121 24544444 588888887777764 345788764
No 168
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=94.79 E-value=0.34 Score=43.64 Aligned_cols=107 Identities=10% Similarity=-0.046 Sum_probs=64.2
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~ 135 (176)
..+..+|-|.+..... -..+++..|-|.++ ..-++..|...+.|+|++.-+-..... . .......|...+
T Consensus 48 ~~A~~~Adgyar~tg~----~gv~~~t~GPG~~n---~l~~i~~A~~~~~Pvl~I~G~~~~~~~-~--~~~~q~~d~~~l 117 (586)
T PRK06276 48 QAAAHAADGYARASGK----VGVCVATSGPGATN---LVTGIATAYADSSPVIALTGQVPTKLI-G--NDAFQEIDALGI 117 (586)
T ss_pred HHHHHHHHHHHHHhCC----CEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCCcccc-C--CCCCccccHhhH
Confidence 3445567787776531 23455556788776 445788999999996655432111111 1 111112355667
Q ss_pred HhhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG 174 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~ 174 (176)
++.+--...+++ +++++...+++|++. .+||+.|++-
T Consensus 118 ~~~~tk~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP 158 (586)
T PRK06276 118 FMPITKHNFQIK--KPEEIPEIFRAAFEIAKTGRPGPVHIDLP 158 (586)
T ss_pred HhhhcceEEecC--CHHHHHHHHHHHHHHhcCCCCCcEEEEcC
Confidence 777765566775 777777777777643 3589999863
No 169
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=94.77 E-value=0.57 Score=35.57 Aligned_cols=106 Identities=19% Similarity=0.149 Sum_probs=60.2
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccC-CchHHHHHH-HhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESA-EGSIWEALH-FASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~-~G~~~eal~-~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~ 135 (176)
.++.|.|+|+.-++ -.+++...+|=... +-...+.+. .....++|+.+++....+++..+.+. .+..+. .+
T Consensus 60 ~vg~a~GlA~~G~~----~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~v~~~~g~~~~~~G~tH--~s~~d~-~~ 132 (178)
T PF02779_consen 60 MVGMAAGLALAGGL----RPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVPVGTRAGLGYGGDGGTH--HSIEDE-AI 132 (178)
T ss_dssp HHHHHHHHHHHSSS----EEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EEEEEEESGGGSTTGTTT--SSSSHH-HH
T ss_pred ccceeeeeeecccc----cceeEeeccccccccchhhhhhhhhhhhcccceecceeecCcccccccccc--cccccc-cc
Confidence 46778888886520 13444555443330 013444454 66678899663322222234443332 223344 45
Q ss_pred Hhhc-CceEEEecCCCHHHHHHHHHHHHhh-CCCcEEEE
Q psy786 136 LDAF-GFNAVVVDGHDVEHLVKVSSFKLQK-AIGCVWIQ 172 (176)
Q Consensus 136 a~a~-G~~~~~vdG~d~~~l~~al~~a~~~-~~~P~lI~ 172 (176)
.+++ |++++.- .|+.++...++.+++. .++|++|-
T Consensus 133 ~~~iPg~~v~~P--sd~~e~~~~l~~a~~~~~~~P~~ir 169 (178)
T PF02779_consen 133 LRSIPGMKVVVP--SDPAEAKGLLRAAIRRESDGPVYIR 169 (178)
T ss_dssp HHTSTTEEEEE---SSHHHHHHHHHHHHHSSSSSEEEEE
T ss_pred cccccccccccC--CCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 5666 8888865 3899999999999853 57998874
No 170
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=94.77 E-value=0.42 Score=43.53 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHH-HHhhhcCCCcEEEEEecCCCc-cccCcccccccHHHHH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEAL-HFASYYKLDNLCVIFDINRLG-QSEPTSLQHQTEVYRK 134 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal-~~a~~~~lp~liiV~~nn~~~-~~~~~~~~~~~~~~~~ 134 (176)
..++.|.|+|+.- -++++++ -+.|.+ ..++-+ +.++..++| ++++.+..++. ..+++. +...|++
T Consensus 363 ~~vg~AaGlA~~G------~~Pvv~~--~a~Fl~-ra~dQi~~~~a~~~lp-V~i~~~~~G~~g~dG~tH--~~~~dia- 429 (617)
T TIGR00204 363 HAVTFAAGMAIEG------YKPFVAI--YSTFLQ-RAYDQVVHDVCIQKLP-VLFAIDRAGIVGADGETH--QGAFDIS- 429 (617)
T ss_pred HHHHHHHHHHHCC------CEEEEEe--cHHHHH-HHHHHHHHHHHhcCCC-EEEEEECCCcCCCCCccc--ccchHHH-
Confidence 3456688877632 2445554 566654 444444 556788999 55666666653 222222 2235555
Q ss_pred HHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 135 RLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 135 ~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
+++.. |+.++.- .|+.++...++.|++..++|++|-
T Consensus 430 ~lr~iPgl~V~~P--sd~~e~~~~l~~a~~~~~~Pv~ir 466 (617)
T TIGR00204 430 YLRCIPNMVIMAP--SDENELRQMLYTGYHYDDGPIAVR 466 (617)
T ss_pred HHhcCCCcEEEee--CCHHHHHHHHHHHHhCCCCCEEEE
Confidence 44444 8887754 389999999999985445898764
No 171
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.76 E-value=0.29 Score=44.04 Aligned_cols=106 Identities=14% Similarity=0.026 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a 136 (176)
.+.-+|-|.|..... -..+++..|-|.++ ..-++..|...+.|+|++.-.-...... .......|...++
T Consensus 63 ~A~~mAdgyar~tg~----~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~---~~~~q~~d~~~l~ 132 (570)
T PRK06725 63 AAIHAAEGYARASGK----VGVVFATSGPGATN---LVTGLADAYMDSIPLVVITGQVATPLIG---KDGFQEADVVGIT 132 (570)
T ss_pred HHHHHHHHHHHHhCC----CeEEEECCCccHHH---HHHHHHHHhhcCcCEEEEecCCCccccc---CCCCcccchhhhh
Confidence 334467777765431 23455566888776 4457889999999966665433322111 1112224667788
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG 174 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~ 174 (176)
+.+--...+|+ +++++.+.+++|+.. .+||+.|++-
T Consensus 133 ~~itk~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP 172 (570)
T PRK06725 133 VPVTKHNYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIP 172 (570)
T ss_pred hccceeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEccc
Confidence 88765566775 788877777777642 3589999863
No 172
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=94.74 E-value=0.25 Score=44.33 Aligned_cols=107 Identities=13% Similarity=-0.005 Sum_probs=63.5
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~ 135 (176)
..+.-+|.|.+.+... -..+++..|-|.++ ..-++..|...+.|+|++.-+-....... ......|...+
T Consensus 63 ~~A~~~A~gyar~tg~----~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~---~~~q~~d~~~l 132 (571)
T PRK07710 63 QGAIHAAEGYARISGK----PGVVIATSGPGATN---VVTGLADAMIDSLPLVVFTGQVATSVIGS---DAFQEADIMGI 132 (571)
T ss_pred HHHHHHHHHHHHHhCC----CeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeccCCccccCC---CCccccchhhh
Confidence 4445577777776531 23445555888776 34578899999999665544322222211 11112355667
Q ss_pred HhhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG 174 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~ 174 (176)
++.+=-..+++. +++++.+.+++|++. .+||+.|++-
T Consensus 133 ~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 173 (571)
T PRK07710 133 TMPVTKHNYQVR--KASDLPRIIKEAFHIATTGRPGPVLIDIP 173 (571)
T ss_pred hhcccceEEecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 777654555664 777777777776642 2589999863
No 173
>PLN02470 acetolactate synthase
Probab=94.72 E-value=0.24 Score=44.61 Aligned_cols=105 Identities=15% Similarity=0.027 Sum_probs=65.6
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
+.-+|-|.+..... -..+++..|-|.++ ..-++..|...+.|+|++.-+-....+.. ..+...|...+++
T Consensus 63 A~~~Adgyar~tg~----~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~I~G~~~~~~~~~---~~~q~~d~~~l~~ 132 (585)
T PLN02470 63 EVFAAEGYAKASGK----VGVCIATSGPGATN---LVTGLADALLDSVPLVAITGQVPRRMIGT---DAFQETPIVEVTR 132 (585)
T ss_pred HHHHHHHHHHHhCC----CEEEEECCCccHHH---HHHHHHHHHhcCCcEEEEecCCChhhcCC---CcCcccchhhhhh
Confidence 44467777776531 23556666888887 34578899999999666643322221111 1112235566777
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG 174 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~ 174 (176)
.+--..++|+ +++++.+.+++|++. .+||+.|++-
T Consensus 133 ~~tk~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP 171 (585)
T PLN02470 133 SITKHNYLVM--DVEDIPRVIREAFFLASSGRPGPVLVDIP 171 (585)
T ss_pred hheEEEEEcC--CHHHHHHHHHHHHHHhcCCCCCeEEEEec
Confidence 7765566774 788888888777653 2599999873
No 174
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=94.68 E-value=0.59 Score=34.94 Aligned_cols=100 Identities=18% Similarity=0.131 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCC--ccccCcccccccHHHHHH
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRL--GQSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~--~~~~~~~~~~~~~~~~~~ 135 (176)
.++.|.|+|+.-. +++++.... |.. ...+.+.+...++ ++.+++....+. +..+.+. ++..++. +
T Consensus 61 ~vg~a~GlA~~G~------~pi~~~~~~--f~~-~a~~~~~~~~~~~-~~~~v~~~~~g~~~g~~G~tH--~~~~~~~-~ 127 (168)
T smart00861 61 MVGFAAGLALAGL------RPVVAIFFT--FFD-RAKDQIRSDGAMG-RVPVVVRHDSGGGVGEDGPTH--HSQEDEA-L 127 (168)
T ss_pred HHHHHHHHHHcCC------CcEEEeeHH--HHH-HHHHHHHHhCccc-CCCEEEEecCccccCCCCccc--cchhHHH-H
Confidence 3556777776432 456666633 322 4566677777776 333344443333 3323222 2223443 4
Q ss_pred Hhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 136 LDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 136 a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
.+.+ |+.++.- .|+.|++..++.+++..++|.+|-
T Consensus 128 ~~~iP~~~v~~P--~~~~e~~~~l~~a~~~~~~p~~i~ 163 (168)
T smart00861 128 LRAIPGLKVVAP--SDPAEAKGLLRAAIRRDDGPPVIR 163 (168)
T ss_pred HhcCCCcEEEec--CCHHHHHHHHHHHHhCCCCCEEEE
Confidence 4444 6766654 489999999999986556886654
No 175
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=94.59 E-value=0.46 Score=43.61 Aligned_cols=100 Identities=16% Similarity=0.147 Sum_probs=63.5
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCc--cccCcccccccHHHHHHH
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLG--QSEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~--~~~~~~~~~~~~~~~~~a 136 (176)
++.|.|+|+... -+++++.. ..|.+ ...+.+..++..++| +++|....+++ ..+++. ++..|++ +.
T Consensus 409 v~~AaGlA~~gG-----~~p~~~tf--~~F~~-r~~~~ir~~a~~~lp-V~~v~th~g~~~G~dG~TH--q~iedia-~l 476 (653)
T TIGR00232 409 GAIMNGIALHGG-----FKPYGGTF--LMFVD-YARPAIRLAALMKLP-VIYVYTHDSIGVGEDGPTH--QPIEQLA-SL 476 (653)
T ss_pred HHHHHHHHHcCC-----CeEEEEEh--HHHHH-HHHHHHHHHHhcCCC-EEEEEeCCccCCCCCCccc--CCHHHHH-HH
Confidence 456777776322 12333333 35544 567778888899999 55556545544 333333 3345555 45
Q ss_pred hhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 137 DAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 137 ~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
++. |+.++.= .|..|+..+++.+++..++|+.|-
T Consensus 477 r~iPn~~v~~P--aD~~E~~~~~~~a~~~~~gP~~ir 511 (653)
T TIGR00232 477 RAIPNLSVWRP--CDGNETAAAWKYALESQDGPTALI 511 (653)
T ss_pred hcCCCCEEEee--CCHHHHHHHHHHHHhcCCCcEEEE
Confidence 555 8887754 389999999999986667898874
No 176
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=94.58 E-value=0.39 Score=42.90 Aligned_cols=103 Identities=12% Similarity=-0.002 Sum_probs=60.5
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA 138 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a 138 (176)
.-+|-|.+.+... -..+++..|-|.++ ..-++..|..-+.|+|++.-+-.. ..... ......|...+++.
T Consensus 52 ~~mAdgyar~tgk----pgv~~~t~GPG~~N---~l~~l~~A~~~~~Pvl~i~G~~~~-~~~~~--~~~q~~d~~~l~~~ 121 (549)
T PRK06457 52 ALAASVEAKITGK----PSACMGTSGPGSIH---LLNGLYDAKMDHAPVIALTGQVES-DMIGH--DYFQEVNLTKLFDD 121 (549)
T ss_pred HHHHHHHHHHhCC----CeEEEeCCCCchhh---hHHHHHHHHhcCCCEEEEecCCCc-cccCC--Ccccccchhhhhcc
Confidence 3467777776531 23445556888876 445789999999996655443221 11111 11112355667776
Q ss_pred cCceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEe
Q psy786 139 FGFNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQR 173 (176)
Q Consensus 139 ~G~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~ 173 (176)
+=-...++. +++++.+.+++|+.. .+||+.|++
T Consensus 122 vtk~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~i 157 (549)
T PRK06457 122 VAVFNQILI--NPENAEYIIRRAIREAISKRGVAHINL 157 (549)
T ss_pred ceeEEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 644455664 677766666666542 369999986
No 177
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=94.58 E-value=0.45 Score=42.73 Aligned_cols=107 Identities=11% Similarity=-0.031 Sum_probs=62.5
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
+.-+|-|.+..... -..+++..|-|.++ ..-++..|...+.|+|++.-+-. ..........+...|...+++
T Consensus 59 A~~mAdgyar~tg~----~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~-~~~~~~~~~~~q~~d~~~~~~ 130 (569)
T PRK09259 59 AGNAAAAAGFLTQK----PGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSE-REIVDLQQGDYEELDQLNAAK 130 (569)
T ss_pred HHHHHHHHHHHhCC----CEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEEccCC-cccccccCCCccccchhhhhh
Confidence 34456677765421 23445555888876 34579999999999666654322 111000011112235667777
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG 174 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~ 174 (176)
.+--..++|+ +++++.+.+++|+.. .+||+.|++-
T Consensus 131 ~~tk~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (569)
T PRK09259 131 PFCKAAFRVN--RAEDIGIGVARAIRTAVSGRPGGVYLDLP 169 (569)
T ss_pred hheeeeEEcC--CHHHHHHHHHHHHHHhhhCCCCcEEEEeC
Confidence 7765566775 677777666666542 3589999873
No 178
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=94.55 E-value=0.43 Score=43.02 Aligned_cols=104 Identities=13% Similarity=-0.012 Sum_probs=59.6
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA 138 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a 138 (176)
.-+|-|.+.+... -..+++..|-|.++ ..-++..|...+.|+|++.-+-....+.. ..+...|...+++.
T Consensus 56 ~~~Adgyar~tg~----~gv~~~t~GPG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~---~~~q~~d~~~l~~~ 125 (588)
T PRK07525 56 GHMADGYTRVTGR----MGMVIGQNGPGITN---FVTAVATAYWAHTPVVLVTPQAGTKTIGQ---GGFQEAEQMPMFED 125 (588)
T ss_pred HHHHHHHHHHhCC----CEEEEEcCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccCCC---CCCcccchhhhhhh
Confidence 4467777776531 23455556888876 34578899999999655542211111111 11112245567777
Q ss_pred cCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEee
Q psy786 139 FGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQRG 174 (176)
Q Consensus 139 ~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~ 174 (176)
+=-..++++ +++++.+.+++|+. ..+||+.|++-
T Consensus 126 ~tk~~~~i~--~~~~~~~~i~rA~~~A~~~~GPV~i~iP 162 (588)
T PRK07525 126 MTKYQEEVR--DPSRMAEVLNRVFDKAKRESGPAQINIP 162 (588)
T ss_pred heeEEEECC--CHHHHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 644455664 66665555555553 23689999873
No 179
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=94.52 E-value=0.36 Score=43.29 Aligned_cols=105 Identities=11% Similarity=0.028 Sum_probs=63.2
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
+.-+|-|.+..... -..+++..|-|.++ ..-++..|...+.|+|++.-+-..... . .......|...+++
T Consensus 55 A~~~Adgyar~tg~----~gv~~~t~GpG~~N---~l~gi~~A~~~~~Pvl~i~G~~~~~~~-~--~~~~q~~d~~~i~~ 124 (572)
T PRK06456 55 AAHAADGYARASGV----PGVCTATSGPGTTN---LVTGLITAYWDSSPVIAITGQVPRSVM-G--KMAFQEADAMGVFE 124 (572)
T ss_pred HHHHHHHHHHhhCC----CEEEEeCCCCCHHH---HHHHHHHHHhhCCCEEEEecCCCcccc-C--CCCccccchhhhhh
Confidence 34467777776431 12334446888886 445789999999996655433222111 1 11111235567777
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEee
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQRG 174 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~~ 174 (176)
.+--...+++ +++++.+.+++|++ ..+||+.|++-
T Consensus 125 ~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 163 (572)
T PRK06456 125 NVTKYVIGIK--RIDEIPQWIKNAFYIATTGRPGPVVIDIP 163 (572)
T ss_pred ccceeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecC
Confidence 7766666774 77777777777664 23599999863
No 180
>PRK08322 acetolactate synthase; Reviewed
Probab=94.52 E-value=0.4 Score=42.67 Aligned_cols=105 Identities=9% Similarity=-0.006 Sum_probs=62.7
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
+.-+|.|.+.+... -..+++..|-|.++ ..-++..|...+.|+|++.-+-..... .. ..+...|...+++
T Consensus 50 A~~~A~gyar~tg~----~gv~~~t~GpG~~N---~~~~i~~A~~~~~Pll~i~g~~~~~~~-~~--~~~q~~d~~~~~~ 119 (547)
T PRK08322 50 AAFMAATYGRLTGK----AGVCLSTLGPGATN---LVTGVAYAQLGGMPMVAITGQKPIKRS-KQ--GSFQIVDVVAMMA 119 (547)
T ss_pred HHHHHHHHHHhhCC----CEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEecccccccc-CC--CccccccHHHHhh
Confidence 34467777776531 23445555787776 345788999999996555433222111 11 1122235667777
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG 174 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~ 174 (176)
.+--...+|+ +++++.+.+++|++. .+||+.|++-
T Consensus 120 ~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 158 (547)
T PRK08322 120 PLTKWTRQIV--SPDNIPEVVREAFRLAEEERPGAVHLELP 158 (547)
T ss_pred hheeEEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcC
Confidence 7654555674 777777777666642 3589999863
No 181
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=94.36 E-value=0.5 Score=42.88 Aligned_cols=105 Identities=13% Similarity=0.047 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a 136 (176)
.+.-+|-|.+.... .-..+++..|-|.++ ..-++..|..-+.|+|++.-+-....+.. ..+...|...++
T Consensus 71 ~Aa~aA~gyar~tg----k~gv~~~t~GPG~~n---~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~---~~~Qe~d~~~~~ 140 (616)
T PRK07418 71 GAAHAADGYARATG----KVGVCFGTSGPGATN---LVTGIATAQMDSVPMVVITGQVPRPAIGT---DAFQETDIFGIT 140 (616)
T ss_pred HHHHHHHHHHHHhC----CCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCccccCC---CCcccccHHHHh
Confidence 34446777776542 123455555888887 44579999999999666654322221111 111123556677
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR 173 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~ 173 (176)
+.+--...+|+ +++++.+++++|++. ..||++|++
T Consensus 141 ~~vtk~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPv~l~i 179 (616)
T PRK07418 141 LPIVKHSYVVR--DPSDMARIVAEAFHIASSGRPGPVLIDI 179 (616)
T ss_pred hhcceeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEec
Confidence 76654445675 777777777777642 349999986
No 182
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.36 E-value=0.35 Score=43.47 Aligned_cols=104 Identities=10% Similarity=-0.030 Sum_probs=63.7
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
+.-+|-|.+..... -..+++..|-|.++ ..-++..|..-+.|+|++.-+-..... .. ..+...|...+++
T Consensus 54 A~~mAdgyar~tg~----~gv~~vt~GPG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~-~~--~~~q~~d~~~l~~ 123 (574)
T PRK06466 54 ATHMADGYARATGK----TGVVLVTSGPGATN---AITGIATAYMDSIPMVVLSGQVPSTLI-GE--DAFQETDMVGISR 123 (574)
T ss_pred HHHHHHHHHHHhCC----CEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCcccc-CC--Ccccccchhhhhh
Confidence 34467777765431 23455556888886 445799999999996655433222111 11 1112246667777
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR 173 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~ 173 (176)
.+=-...+|+ +++++...+++|+.. .+||+.|++
T Consensus 124 ~itk~s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~i 161 (574)
T PRK06466 124 PIVKHSFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDI 161 (574)
T ss_pred ccceeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 7755566775 777777777777642 258999986
No 183
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=94.34 E-value=0.63 Score=42.63 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=64.7
Q ss_pred Ccccc-hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHH-HHhhhcCCCcEEEEEecCCCc-cccCcccccc
Q psy786 52 TGSLG-QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEAL-HFASYYKLDNLCVIFDINRLG-QSEPTSLQHQ 128 (176)
Q Consensus 52 ~g~~G-~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal-~~a~~~~lp~liiV~~nn~~~-~~~~~~~~~~ 128 (176)
+|.-- ..++.|.|+|+.- -++++.+. ..|.+ ...+.+ ..++..++|+ +++++..++. ..+++. ++
T Consensus 366 ~GIaE~~mvg~AaGlA~~G------~~P~v~~f--~~Fl~-ra~dQI~~~~a~~~lpv-~~v~~~~G~~g~dG~TH--q~ 433 (641)
T PRK12571 366 VGIAEQHAVTFAAGLAAAG------LKPFCAVY--STFLQ-RGYDQLLHDVALQNLPV-RFVLDRAGLVGADGATH--AG 433 (641)
T ss_pred cCccHHHHHHHHHHHHHCC------CEEEEEeh--HHHHH-HHHHHHHHHHhhcCCCe-EEEEECCCcCCCCCccc--cc
Confidence 44442 3355678888732 24566554 45654 556666 5578899994 5666655542 222222 22
Q ss_pred cHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 129 TEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 129 ~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
..|++ ++++. |+.++.= .|+.|+..+++.|++..++|+.|-
T Consensus 434 ~~dia-~lr~iPnl~V~~P--sd~~e~~~~l~~a~~~~~~P~~ir 475 (641)
T PRK12571 434 AFDLA-FLTNLPNMTVMAP--RDEAELRHMLRTAAAHDDGPIAVR 475 (641)
T ss_pred cHHHH-HHhcCCCCEEEee--CCHHHHHHHHHHHHhCCCCcEEEE
Confidence 34554 44444 8887754 389999999999985457998774
No 184
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=94.34 E-value=0.48 Score=42.35 Aligned_cols=106 Identities=11% Similarity=-0.009 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a 136 (176)
.+.-+|-|.+..... -..+++..|-|.++ ..-++..|...++|+|++.-+-...... .......|...++
T Consensus 50 ~A~~~Adgyar~tg~----~gv~~~t~GpG~~n---~l~~i~~A~~~~~Pvl~i~g~~~~~~~~---~~~~q~~d~~~~~ 119 (558)
T TIGR00118 50 GAAHAADGYARASGK----VGVVLVTSGPGATN---LVTGIATAYMDSIPMVVFTGQVPTSLIG---SDAFQEADILGIT 119 (558)
T ss_pred HHHHHHHHHHHHhCC----CEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCCccccC---CCCCcccChhhhh
Confidence 334467777766531 23556666888776 4457889999999966555432211111 1111123556677
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG 174 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~ 174 (176)
+.+--...+++ +++++.+.+++|++. .+||+.|++-
T Consensus 120 ~~~tk~~~~v~--~~~~~~~~v~~A~~~A~~~~~GPV~i~iP 159 (558)
T TIGR00118 120 MPITKHSFQVK--SAEDIPRIIKEAFHIATTGRPGPVLVDLP 159 (558)
T ss_pred cCccceeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Confidence 87766667775 777777777777642 3589999863
No 185
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=94.34 E-value=0.66 Score=41.93 Aligned_cols=99 Identities=17% Similarity=0.137 Sum_probs=60.1
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHH-HHhhhcCCCcEEEEEecCCCcc-ccCcccccccHHHHHHH
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEAL-HFASYYKLDNLCVIFDINRLGQ-SEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal-~~a~~~~lp~liiV~~nn~~~~-~~~~~~~~~~~~~~~~a 136 (176)
++.|.|+|+.- -++++.. =..|.. ..++.+ +.++..++|+ +++....++.. .+++. +...|++ +.
T Consensus 334 vg~A~GlA~~G------~~p~~~~--f~~F~~-ra~dQi~~~~a~~~~pv-~~v~~~~G~~g~dG~tH--~~~edia-~l 400 (580)
T PRK05444 334 VTFAAGLATEG------LKPVVAI--YSTFLQ-RAYDQVIHDVALQNLPV-TFAIDRAGLVGADGPTH--QGAFDLS-YL 400 (580)
T ss_pred HHHHHHHHHCC------CeeEEEe--eHHHHH-HHHHHHHHHhhhcCCCE-EEEEeCCCcCCCCCccc--cccHHHH-HH
Confidence 45688888732 2344444 455654 455544 4477889994 55555444432 12222 2234555 44
Q ss_pred hhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 137 DAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 137 ~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
++. |+.++.= .|+.|+..+++.|++..++|++|-
T Consensus 401 r~iP~l~V~~P--sd~~e~~~~l~~a~~~~~~P~~ir 435 (580)
T PRK05444 401 RCIPNMVIMAP--SDENELRQMLYTALAYDDGPIAIR 435 (580)
T ss_pred hcCCCCEEEee--CCHHHHHHHHHHHHhCCCCcEEEE
Confidence 544 8888864 389999999999985557998864
No 186
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=94.32 E-value=0.42 Score=43.37 Aligned_cols=107 Identities=12% Similarity=0.012 Sum_probs=65.0
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~ 135 (176)
..+.-+|-|.+..... -..+++..|-|.++ ..-++..|...++|+|++.-+-....+. ...+...|...+
T Consensus 79 ~~A~~~Adgyar~tg~----~gv~~~t~GPG~~N---~l~gl~~A~~~~~PllvI~G~~~~~~~~---~~~~q~~d~~~l 148 (612)
T PRK07789 79 QGAGHAAEGYAQATGR----VGVCMATSGPGATN---LVTPIADANMDSVPVVAITGQVGRGLIG---TDAFQEADIVGI 148 (612)
T ss_pred HHHHHHHHHHHHHhCC----CEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC---CCcCcccchhhh
Confidence 3444567777766431 23455556787776 3457889999999966555432222211 111222366677
Q ss_pred HhhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG 174 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~ 174 (176)
++.+--...+|+ +++++.+.+++|+.. .+||++|++-
T Consensus 149 ~~~~tk~s~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP 189 (612)
T PRK07789 149 TMPITKHNFLVT--DADDIPRVIAEAFHIASTGRPGPVLVDIP 189 (612)
T ss_pred hhcceeEEEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEEc
Confidence 777755555675 777777777777642 2589999873
No 187
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=94.30 E-value=0.35 Score=43.15 Aligned_cols=105 Identities=13% Similarity=-0.004 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a 136 (176)
.+.-+|-|.+..... -..+++..|-|.++ ..-++..|...+.|+|++.-+-....... ......|...++
T Consensus 49 ~A~~~Adgyar~sg~----~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~---~~~q~~d~~~~~ 118 (548)
T PRK08978 49 GAAMAAIGYARATGK----VGVCIATSGPGATN---LITGLADALLDSVPVVAITGQVSSPLIGT---DAFQEIDVLGLS 118 (548)
T ss_pred HHHHHHHHHHHHhCC----CEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC---CCCcccchhccc
Confidence 344467777776531 23455556888876 44579999999999665544333222211 111123455567
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR 173 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~ 173 (176)
+.+=-...+|+ +++++...+++|++. .+||+.|++
T Consensus 119 ~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~i 157 (548)
T PRK08978 119 LACTKHSFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDI 157 (548)
T ss_pred cCceeeEEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEec
Confidence 76654556775 777777777777642 258999986
No 188
>PTZ00089 transketolase; Provisional
Probab=94.28 E-value=0.54 Score=43.19 Aligned_cols=102 Identities=14% Similarity=0.033 Sum_probs=66.5
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCc--cccCcccccccHHHHHH
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLG--QSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~--~~~~~~~~~~~~~~~~~ 135 (176)
.+..|.|+|+... -+++++.. ..|.+ ...+.+..++..+||+ ++|....+.+ .++++. ++..|++ +
T Consensus 415 mv~~AaGlA~~~G-----~~P~~~tf--~~Fl~-Ra~dqir~~al~~lpV-~~v~thdg~~~g~DG~TH--q~iedia-~ 482 (661)
T PTZ00089 415 MCAIMNGIAAHGG-----FIPFGATF--LNFYG-YALGAVRLAALSHHPV-IYVATHDSIGLGEDGPTH--QPVETLA-L 482 (661)
T ss_pred HHHHHHHHHHcCC-----CeEEEEeh--HHHHH-HHHHHHHHHHhcCCCe-EEEEeCCceecCCCCCCc--ccHHHHH-H
Confidence 3556777777222 24666665 47765 6778899999999994 5555444444 333332 2335555 5
Q ss_pred Hhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEe
Q psy786 136 LDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQR 173 (176)
Q Consensus 136 a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~ 173 (176)
.++. ++.+++= .|..|+..+++.|+...++|+.|-.
T Consensus 483 lR~iPn~~V~~P--aD~~E~~~~l~~al~~~~gP~~irl 519 (661)
T PTZ00089 483 LRATPNLLVIRP--ADGTETSGAYALALANAKTPTILCL 519 (661)
T ss_pred HhcCCCcEEEec--CCHHHHHHHHHHHHHcCCCCEEEEe
Confidence 5655 7777653 3899999999999865678987753
No 189
>PRK05899 transketolase; Reviewed
Probab=94.17 E-value=0.66 Score=42.27 Aligned_cols=102 Identities=16% Similarity=0.138 Sum_probs=64.2
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCcc--ccCcccccccHHHHHH
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQ--SEPTSLQHQTEVYRKR 135 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~--~~~~~~~~~~~~~~~~ 135 (176)
.++.|.|+|+.-. -+++++.. ..|. ...++.+.+.+..++| +++|....+++. .+.+. ++..|++-+
T Consensus 379 ~vg~A~GlA~~G~-----~~pv~~t~--~~F~-~r~~~qir~~~~~~~p-v~~v~~~~G~~~g~~G~tH--q~~edia~~ 447 (624)
T PRK05899 379 MAAIANGLALHGG-----FIPFGGTF--LVFS-DYARNAIRLAALMKLP-VIYVFTHDSIGVGEDGPTH--QPVEQLASL 447 (624)
T ss_pred HHHHHHHHHHcCC-----CeEEEEEc--HHHH-HHHHHHHHHHHhcCCC-EEEEEECCCcCcCCCCCCc--ccHHHHHHH
Confidence 3566777776431 23444433 4554 3677888888888999 456666666543 33333 334555533
Q ss_pred HhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
..--|+.++.- .|+.++...++.+++..++|++|-
T Consensus 448 r~iP~~~V~~P--~d~~e~~~~l~~a~~~~~~P~~ir 482 (624)
T PRK05899 448 RAIPNLTVIRP--ADANETAAAWKYALERKDGPSALV 482 (624)
T ss_pred HhCCCcEEEeC--CCHHHHHHHHHHHHHcCCCCEEEE
Confidence 33338887754 489999999999985447998774
No 190
>PRK07586 hypothetical protein; Validated
Probab=94.14 E-value=0.46 Score=41.98 Aligned_cols=106 Identities=10% Similarity=-0.057 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a 136 (176)
.+.-+|-|.|..... -..+++..|-|.++ ..-.+..|...+.|+|++.-+-...... .......|...++
T Consensus 50 ~A~~mAdgyar~tg~----~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~---~~~~q~~d~~~~~ 119 (514)
T PRK07586 50 VATGAADGYARMAGK----PAATLLHLGPGLAN---GLANLHNARRARTPIVNIVGDHATYHRK---YDAPLTSDIEALA 119 (514)
T ss_pred HHHHHHHHHHHHHCC----CEEEEecccHHHHH---HHHHHHHHHhcCCCEEEEecCCchhccC---CCcccccchhhhh
Confidence 334467777765431 13345556888765 3446888999999965554332211111 1111123566788
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEee
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQRG 174 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~~ 174 (176)
+.+--...+|. +++++.+.+++|+. ..+||++|++-
T Consensus 120 ~~vtk~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 159 (514)
T PRK07586 120 RPVSGWVRRSE--SAADVAADAAAAVAAARGAPGQVATLILP 159 (514)
T ss_pred ccccceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 87755556674 67666666666654 23689999863
No 191
>PRK11269 glyoxylate carboligase; Provisional
Probab=94.13 E-value=0.43 Score=43.06 Aligned_cols=105 Identities=16% Similarity=0.027 Sum_probs=64.1
Q ss_pred hHHHHHHHHHhc-hhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786 58 GLSVAAGMAYVG-KYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 58 ~l~~AvG~A~a~-~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a 136 (176)
+.-+|-|.|... .. -..+++..|-|.++ ..-++..|..-+.|+|++.-+-...... . ..+...|...++
T Consensus 54 A~~mAdGYar~t~g~----~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~-~--~~~q~~d~~~l~ 123 (591)
T PRK11269 54 ASHMAEGYTRATAGN----IGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLH-K--EDFQAVDIESIA 123 (591)
T ss_pred HHHHHHHHHHHcCCC----cEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccC-C--CcccccChhhHh
Confidence 445677877765 31 23445556888886 3446889999999966554432222111 1 112223566777
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG 174 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~ 174 (176)
+.+=-...+|+ +++++.+.+++|++. .+||+.|++-
T Consensus 124 ~~itk~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 163 (591)
T PRK11269 124 KPVTKWAVTVR--EPALVPRVFQQAFHLMRSGRPGPVLIDLP 163 (591)
T ss_pred hcceeEEEEcC--CHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 77655555674 788777777777652 3589999874
No 192
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=94.09 E-value=0.46 Score=42.60 Aligned_cols=106 Identities=13% Similarity=0.021 Sum_probs=63.3
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~ 135 (176)
..+.-+|-|.+..... -..+++..|-|.++ ..-++..|...+.|+|++.-.-....+ . .......|...+
T Consensus 55 ~~A~~~Adgyar~tg~----~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~G~~~~~~~-~--~~~~q~~d~~~~ 124 (561)
T PRK06048 55 QAAAHAADGYARATGK----VGVCVATSGPGATN---LVTGIATAYMDSVPIVALTGQVPRSMI-G--NDAFQEADITGI 124 (561)
T ss_pred HHHHHHHHHHHHHhCC----CeEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEeccCCcccc-C--CCCccccchhhh
Confidence 3445567777776531 23455556888886 345799999999996655432211111 1 111112355667
Q ss_pred HhhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR 173 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~ 173 (176)
++.+=-..++|+ +++++.+.+++|++. .+||+.|++
T Consensus 125 ~~~itk~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~i 164 (561)
T PRK06048 125 TMPITKHNYLVQ--DAKDLPRIIKEAFHIASTGRPGPVLIDL 164 (561)
T ss_pred ccCcceEEEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEec
Confidence 777654455674 777777777776642 358999986
No 193
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.09 E-value=0.49 Score=42.43 Aligned_cols=106 Identities=13% Similarity=-0.026 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a 136 (176)
.+.-+|-|.+.... .-..+++..|-|.++ ..-++..|...+.|+|++.-.-...... .......|...++
T Consensus 52 ~A~~~Adgyar~tg----~~gv~~~t~GpG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~---~~~~q~~d~~~~~ 121 (563)
T PRK08527 52 AAVHAADGYARASG----KVGVAIVTSGPGFTN---AVTGLATAYMDSIPLVLISGQVPNSLIG---TDAFQEIDAVGIS 121 (563)
T ss_pred HHHHHHHHHHhhhC----CCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccC---CCCCcccchhhhh
Confidence 33446677776543 123455566888886 3457889999999966554321111111 1111223556677
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG 174 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~ 174 (176)
+.+--...+|+ +++++.+++++|++. .+||+.|++-
T Consensus 122 ~~~tk~s~~v~--~~~~i~~~l~~A~~~a~s~~~GPV~l~iP 161 (563)
T PRK08527 122 RPCVKHNYLVK--SIEELPRILKEAFYIARSGRPGPVHIDIP 161 (563)
T ss_pred hcccceEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 77754455674 888888888888753 2489999863
No 194
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.03 E-value=0.53 Score=42.57 Aligned_cols=107 Identities=15% Similarity=0.006 Sum_probs=64.4
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~ 135 (176)
..+.-+|-|.+..... -..+++..|-|.++ ..-++..|...+.|+|++.-+-..... .. ..+...|...+
T Consensus 59 ~~A~~mAdgyar~tg~----~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~i~G~~~~~~~-~~--~~~q~~d~~~l 128 (595)
T PRK09107 59 QGAGHAAEGYARSTGK----PGVVLVTSGPGATN---AVTPLQDALMDSIPLVCITGQVPTHLI-GS--DAFQECDTVGI 128 (595)
T ss_pred HHHHHHHHHHHHHhCC----CEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEEcCCChhhc-CC--CCCcccchhhh
Confidence 3344467777765431 23455556888886 345788999999996655433221111 11 11222355667
Q ss_pred HhhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG 174 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~ 174 (176)
++.+--...+|+ +++++.+.+++|++. .+||+.|++-
T Consensus 129 ~~~vtk~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP 169 (595)
T PRK09107 129 TRPCTKHNWLVK--DVNDLARVIHEAFHVATSGRPGPVVVDIP 169 (595)
T ss_pred hhhheEEEEEeC--CHHHHHHHHHHHHHHhcCCCCceEEEecC
Confidence 777655555675 788877777777653 3589999863
No 195
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=94.03 E-value=0.52 Score=42.41 Aligned_cols=104 Identities=13% Similarity=-0.005 Sum_probs=59.6
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA 138 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a 138 (176)
.-+|-|.+..... -..+++..|-|.++ ..-++..|...+.|+|++.-.-....... ..+...|...+++.
T Consensus 52 ~~~Adgyar~tg~----~gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~I~g~~~~~~~~~---~~~Q~~d~~~l~~~ 121 (579)
T TIGR03457 52 GHMADGFARVTGR----MSMVIGQNGPGVTN---CVTAIAAAYWAHTPVVIVTPEAGTKTIGL---GGFQEADQLPMFQE 121 (579)
T ss_pred HHHHHHHHHHhCC----CEEEEECCCchHHH---HHHHHHHHhhcCCCEEEEeCCCccccCCC---CCCcccchhhhhhc
Confidence 4467777765431 23444555888886 34579999999999655542212111111 11112355667777
Q ss_pred cCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEee
Q psy786 139 FGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQRG 174 (176)
Q Consensus 139 ~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~ 174 (176)
+--...++. +++++.+.+++|+. ..+||+.|++-
T Consensus 122 vtk~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 158 (579)
T TIGR03457 122 FTKYQGHVR--HPSRMAEVLNRCFERAWREMGPAQLNIP 158 (579)
T ss_pred ceeEEEecC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 755555664 66666655555543 23689999873
No 196
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.02 E-value=0.58 Score=42.06 Aligned_cols=105 Identities=12% Similarity=-0.018 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
+.-+|-|.+..... -..+++..|-|.++ ..-++..|...+.|+|++.-.-..... . ...+...|...+++
T Consensus 54 A~~mAdgyar~tg~----~gv~~~t~GpG~~n---~l~gia~A~~~~~Pvl~i~G~~~~~~~-~--~~~~q~~d~~~~~~ 123 (572)
T PRK08979 54 AVHMADGYARATGK----VGVVLVTSGPGATN---TITGIATAYMDSIPMVVLSGQVPSNLI-G--NDAFQECDMIGISR 123 (572)
T ss_pred HHHHHHHHHHHhCC----CeEEEECCCchHhH---HHHHHHHHhhcCCCEEEEecCCCcccc-C--CCCCcccchhHHhh
Confidence 34467777776431 23445555888776 345688999999996655433221111 1 11122235667777
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG 174 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~ 174 (176)
.+=-...+|+ +++++...+++|++. .+||+.|++-
T Consensus 124 ~itk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (572)
T PRK08979 124 PVVKHSFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLP 162 (572)
T ss_pred hceeEEEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecC
Confidence 7654555775 787777777777642 3589999863
No 197
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=94.02 E-value=0.52 Score=42.22 Aligned_cols=104 Identities=19% Similarity=0.122 Sum_probs=60.6
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
+.-+|-|.+..... -..+++..|-|.++ ..-++..|...+.|+|++.-+-...... ...+...|...+++
T Consensus 63 A~~~Adgyar~tg~----~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~---~~~~q~~d~~~~~~ 132 (564)
T PRK08155 63 AGFIAQGMARTTGK----PAVCMACSGPGATN---LVTAIADARLDSIPLVCITGQVPASMIG---TDAFQEVDTYGISI 132 (564)
T ss_pred HHHHHHHHHHHcCC----CeEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeccCCccccc---CCCccccchhhhhh
Confidence 34467788876531 12334444777776 3457889999999966554332221111 11111234556677
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR 173 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~ 173 (176)
.+--...+++ +++++...+++|++. .+||+.|++
T Consensus 133 ~~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~i~i 170 (564)
T PRK08155 133 PITKHNYLVR--DIEELPQVISDAFRIAQSGRPGPVWIDI 170 (564)
T ss_pred ccceEEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 6654555674 677777767666642 258999986
No 198
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=94.02 E-value=0.54 Score=42.47 Aligned_cols=105 Identities=16% Similarity=0.041 Sum_probs=62.7
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA 138 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a 138 (176)
.-+|-|.+.+.. +.-..+++..|-|.++ ..-++..|...+.|+|++.-+-...... . ..+...|...+++.
T Consensus 54 ~~mAdgyaR~t~---g~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~-~--~~~q~~D~~~~~~~ 124 (588)
T TIGR01504 54 SHMAEGYTRATA---GNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLH-K--EDFQAVDIAAIAKP 124 (588)
T ss_pred HHHHHHHHHhcC---CCeEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC-C--CcccccCHHHHhhh
Confidence 446677776541 0112344445888776 3457889999999966554332221111 1 11222356678887
Q ss_pred cCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786 139 FGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG 174 (176)
Q Consensus 139 ~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~ 174 (176)
+--...+|. +++++.+.+++|++. .+||++|++-
T Consensus 125 vtk~~~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP 162 (588)
T TIGR01504 125 VSKMAVTVR--EAALVPRVLQQAFHLMRSGRPGPVLIDLP 162 (588)
T ss_pred hceEEEEcC--CHHHHHHHHHHHHHHHccCCCCeEEEEeC
Confidence 765566775 788877777777652 3489999874
No 199
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=94.00 E-value=0.63 Score=41.82 Aligned_cols=105 Identities=15% Similarity=0.004 Sum_probs=62.3
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
+.-+|-|.+..... -..+++..|-|..+ ..-++..|...++|+|++.-+-..... .. ......|...+++
T Consensus 61 A~~~Adgyar~tg~----~gv~~~t~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~-~~--~~~Q~~d~~~l~~ 130 (578)
T PRK06112 61 GGAMADGYARVSGK----VAVVTAQNGPAATL---LVAPLAEALKASVPIVALVQDVNRDQT-DR--NAFQELDHIALFQ 130 (578)
T ss_pred HHHHHHHHHHHhCC----CEEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccC-CC--CCccccChhhhhc
Confidence 34467777776531 23455555777776 345688899999996655433221111 11 1111235567788
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEee
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQRG 174 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~~ 174 (176)
.+--...+++ +++++.+.+++|+. ..+||+.|++-
T Consensus 131 ~vtk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 169 (578)
T PRK06112 131 SCTKWVRRVT--VAERIDDYVDQAFTAATSGRPGPVVLLLP 169 (578)
T ss_pred cccceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 8766666775 66666666666654 23589999874
No 200
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.94 E-value=0.68 Score=41.55 Aligned_cols=105 Identities=11% Similarity=-0.053 Sum_probs=62.1
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
+.-+|-|.+..... -..+++..|=|.++ ..-++..|...+.|+|++.-+-..... . .......|...+++
T Consensus 54 A~~mAdgyar~tg~----~gv~~~t~GpG~~N---~l~~i~~A~~~~~Pvlvi~G~~~~~~~-~--~~~~q~~d~~~l~~ 123 (574)
T PRK06882 54 AVHMADGYARSTGK----VGCVLVTSGPGATN---AITGIATAYTDSVPLVILSGQVPSNLI-G--TDAFQECDMLGISR 123 (574)
T ss_pred HHHHHHHHHHhhCC----CeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCcccc-C--CCcccccchhhhhh
Confidence 34467777766431 23455556888776 345788999999996555432221111 1 11111235567777
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG 174 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~ 174 (176)
.+=-...+|. +++++...+++|+.. .+||+.|++-
T Consensus 124 ~vtk~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (574)
T PRK06882 124 PVVKHSFIVK--NAEDIPSTIKKAFYIASTGRPGPVVIDIP 162 (574)
T ss_pred cccceEEEeC--CHHHHHHHHHHHHHHHhcCCCCCEEEecC
Confidence 7755566774 777776666666642 3589999863
No 201
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=93.93 E-value=0.83 Score=42.22 Aligned_cols=101 Identities=12% Similarity=0.080 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHH-HHhhhcCCCcEEEEEecCCCcc-ccCcccccccHHHHH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEAL-HFASYYKLDNLCVIFDINRLGQ-SEPTSLQHQTEVYRK 134 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal-~~a~~~~lp~liiV~~nn~~~~-~~~~~~~~~~~~~~~ 134 (176)
..+..|.|+|..- -++++++. ..|.+ ..++-+ .-++..++|+ .++++..++.. .+++ -....|++
T Consensus 434 haVt~AAGLA~~G------~kPvv~iy--stFlq-RAyDQI~~Dval~~lpV-~~vid~aGlvg~DG~T--H~g~~Dia- 500 (701)
T PLN02225 434 HAVTFSAGLSSGG------LKPFCIIP--SAFLQ-RAYDQVVHDVDRQRKAV-RFVITSAGLVGSDGPV--QCGAFDIA- 500 (701)
T ss_pred HHHHHHHHHHHCC------CEEEEEee--hhHHH-HHHHHHHHHHHhhcCCc-eEEEECCccCCCCCcc--ccccHHHH-
Confidence 3455677777632 36788877 46755 344433 4467889995 55566555432 1222 12345665
Q ss_pred HHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 135 RLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 135 ~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
+++.. |+.++.= .|..|+...++.|+...++|+.|-
T Consensus 501 ~lr~IPnm~V~aP--sD~~El~~mL~~A~~~~~gPv~IR 537 (701)
T PLN02225 501 FMSSLPNMIAMAP--ADEDELVNMVATAAYVTDRPVCFR 537 (701)
T ss_pred HHhcCCCCEEEee--CCHHHHHHHHHHHHhcCCCCEEEE
Confidence 44444 8887754 389999999999875556898873
No 202
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=93.92 E-value=0.43 Score=42.85 Aligned_cols=107 Identities=13% Similarity=-0.006 Sum_probs=64.4
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~ 135 (176)
..+.-+|-|.+..... -..+++..|-|.++ ..-++..|...+.|+|++.-+-....... ..+...|...+
T Consensus 58 ~~A~~~Adgyar~tg~----~gv~~~t~GPG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~~ 127 (566)
T PRK07282 58 QGALHEAEGYAKSTGK----LGVAVVTSGPGATN---AITGIADAMSDSVPLLVFTGQVARAGIGK---DAFQEADIVGI 127 (566)
T ss_pred HHHHHHHHHHHHHhCC----CeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecccccccCCC---CCccccChhch
Confidence 3445567777765431 23556666888887 34578899999999666554323222211 11112345567
Q ss_pred HhhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG 174 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~ 174 (176)
++.+--...+++ +++++.+.+++|++. .+||+.|++-
T Consensus 128 ~~~itk~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 168 (566)
T PRK07282 128 TMPITKYNYQIR--ETADIPRIITEAVHIATTGRPGPVVIDLP 168 (566)
T ss_pred hcCCCceeEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEeCC
Confidence 777755555674 677776666666643 3589999873
No 203
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.90 E-value=0.73 Score=41.58 Aligned_cols=105 Identities=12% Similarity=-0.004 Sum_probs=61.2
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
+.-+|-|.+..... -..+++..|-|.++ ..-++..|...+.|+|++.-.-...... .......|...+++
T Consensus 71 A~~~AdgYar~tg~----~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~---~~~~q~~d~~~l~~ 140 (587)
T PRK06965 71 AVHAADGYARATGK----VGVALVTSGPGVTN---AVTGIATAYMDSIPMVVISGQVPTAAIG---QDAFQECDTVGITR 140 (587)
T ss_pred HHHHHHHHHHHhCC----CeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC---CCCcccccHHHHhc
Confidence 34467777776531 23445555777776 3456889999999965554221111111 11122246667788
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEee
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQRG 174 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~~ 174 (176)
.+--...+|. +++++.+.+++|+. ..+||+.|++-
T Consensus 141 ~itk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 179 (587)
T PRK06965 141 PIVKHNFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIP 179 (587)
T ss_pred CCcceeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 7765566674 67666666655553 23589999873
No 204
>PRK08617 acetolactate synthase; Reviewed
Probab=93.89 E-value=0.53 Score=42.05 Aligned_cols=103 Identities=15% Similarity=0.075 Sum_probs=61.3
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA 138 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a 138 (176)
.-+|-|.+.... .-..+++..|-|.++ ..-++..|...+.|+|++.-......+.. ......|...+++.
T Consensus 55 ~~~A~gyar~tg----~~gv~~vt~GpG~~N---~l~gl~~A~~~~~PvlvisG~~~~~~~~~---~~~q~~d~~~l~~~ 124 (552)
T PRK08617 55 AFMAAAIGRLTG----KPGVVLVTSGPGVSN---LATGLVTATAEGDPVVAIGGQVKRADRLK---RTHQSMDNVALFRP 124 (552)
T ss_pred HHHHHhHhhhcC----CCEEEEECCCCcHhH---hHHHHHHHhhcCCCEEEEecCCcccccCC---CCccccchhhhhhh
Confidence 335667666542 113444455888876 34568899999999665544322211111 11112355667777
Q ss_pred cCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786 139 FGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR 173 (176)
Q Consensus 139 ~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~ 173 (176)
+--...+++ +++++...+++|++. .+||+.|++
T Consensus 125 ~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~i 161 (552)
T PRK08617 125 ITKYSAEVQ--DPDNLSEVLANAFRAAESGRPGAAFVSL 161 (552)
T ss_pred hcceEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEeC
Confidence 755566775 777777777777652 358999986
No 205
>PRK12753 transketolase; Reviewed
Probab=93.84 E-value=0.68 Score=42.59 Aligned_cols=104 Identities=14% Similarity=0.083 Sum_probs=67.1
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
.++.|.|+|+... -+++++.. ..|.+ ..++.+..++..++| +++|....+++.......-++..|++ +.+
T Consensus 414 mv~~aaGlA~~~G-----~~P~~~tf--~~F~~-r~~~qir~~a~~~l~-V~~v~thdg~~~G~DG~THq~iedla-~lR 483 (663)
T PRK12753 414 MTAIANGIAHHGG-----FVPYTATF--LMFVE-YARNAARMAALMKAR-QIMVYTHDSIGLGEDGPTHQPVEQLA-SLR 483 (663)
T ss_pred HHHHHHHHHHhCC-----CeEEEEeh--HHHHH-HHHHHHHHHHhcCCC-eEEEEeCCCcccCCCCcccccHHHHH-HHh
Confidence 3567778887321 13455444 46655 678889998999999 55665556655532222223345554 556
Q ss_pred hc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEe
Q psy786 138 AF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQR 173 (176)
Q Consensus 138 a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~ 173 (176)
+. ++.+++- .|..|+..+++.|++..++|+.|-.
T Consensus 484 ~iPn~~v~~P--aD~~E~~~~~~~al~~~~gP~~irl 518 (663)
T PRK12753 484 LTPNFSTWRP--CDQVEAAVAWKLAIERHNGPTALIL 518 (663)
T ss_pred cCCCCEEEcc--CCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 65 7777754 3899999999999864678987753
No 206
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=93.80 E-value=0.41 Score=38.22 Aligned_cols=101 Identities=14% Similarity=0.099 Sum_probs=57.4
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
++..++|++++-+ ++++.+.=.++. ...|.|.+++..++|+++++++-.+=+-..++ .....|+. .++
T Consensus 48 A~~~~~GAs~aG~-------ra~t~ts~~Gl~--lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~--~~~q~D~~-~~~ 115 (230)
T PF01855_consen 48 AMEAAIGASAAGA-------RAMTATSGPGLN--LMAEPLYWAAGTELPIVIVVVQRAGPSPGLST--QPEQDDLM-AAR 115 (230)
T ss_dssp HHHHHHHHHHTT---------EEEEEECCHHH--HHCCCHHHHHHTT--EEEEEEEB---SSSB----SB-SHHHH-HTT
T ss_pred HHHHHHHHHhcCC-------ceEEeecCCccc--ccHhHHHHHHHcCCCEEEEEEECCCCCCCCcC--cCChhHHH-HHH
Confidence 4677889888743 566666666665 35678999999999976666653321110111 11123433 455
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEE
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQ 172 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~ 172 (176)
-+||..+... |++|..+....|++ +.+-|+++-
T Consensus 116 d~~~~vl~p~--~~QEa~d~~~~A~~lAe~~~~PViv~ 151 (230)
T PF01855_consen 116 DSGWIVLAPS--SPQEAYDMTLIAFNLAEKYQTPVIVL 151 (230)
T ss_dssp TSS-EEEE----SHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred hcCeEEEeCC--CHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 7888877664 88888777777754 346788763
No 207
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=93.80 E-value=0.88 Score=41.98 Aligned_cols=106 Identities=14% Similarity=0.102 Sum_probs=64.5
Q ss_pred Cccc-chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHH-HHHHhhhcCCCcEEEEEecCCCcc-ccCcccccc
Q psy786 52 TGSL-GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWE-ALHFASYYKLDNLCVIFDINRLGQ-SEPTSLQHQ 128 (176)
Q Consensus 52 ~g~~-G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~e-al~~a~~~~lp~liiV~~nn~~~~-~~~~~~~~~ 128 (176)
.|.- ...++.|.|+|+.- -++++++. ..|.+ ..++ -+..++..++| ++++++..++.. .+++. ..
T Consensus 403 vGIAEq~~vg~AaGLA~~G------~kPvv~~f--s~Fl~-RA~DQI~~dval~~lp-Vv~v~~~aG~vg~dG~TH--~~ 470 (677)
T PLN02582 403 VGIAEQHAVTFAAGLACEG------LKPFCAIY--SSFLQ-RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTH--CG 470 (677)
T ss_pred cCcCHHHHHHHHHHHHHCC------CeEEEEec--HHHHH-HHHHHHHHHHHhcCCC-EEEEEECCCcccCCCCcc--cc
Confidence 3444 33456677877732 35666664 45654 3444 34666788999 556666555432 22222 22
Q ss_pred cHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 129 TEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 129 ~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
..|++ +++.. |+.++.= .|..|++.+++.|+...++|++|-
T Consensus 471 ~~Dia-~lr~iPnl~V~~P--sd~~E~~~~l~~al~~~~gPv~IR 512 (677)
T PLN02582 471 AFDVT-YMACLPNMVVMAP--SDEAELFHMVATAAAIDDRPSCFR 512 (677)
T ss_pred cHHHH-HHhcCCCCEEEee--CCHHHHHHHHHHHHhCCCCCEEEE
Confidence 34554 34444 8887754 389999999999985556898874
No 208
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=93.64 E-value=0.85 Score=41.30 Aligned_cols=100 Identities=12% Similarity=0.066 Sum_probs=61.1
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHH-HHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWE-ALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~e-al~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a 136 (176)
.++.|.|+|+.- -+++++...+ |.+ ..++ -.+.++..++| ++++++..++...+++. ++..|++ +.
T Consensus 332 ~v~~AaGlA~~G------~~Pvv~~fs~--Fl~-ra~dQi~~d~a~~~lp-v~~~~~~~g~~~dG~TH--~~~~Dia-~l 398 (581)
T PRK12315 332 SVAFASGIAANG------ARPVIFVNST--FLQ-RAYDQLSHDLAINNNP-AVMIVFGGSISGNDVTH--LGIFDIP-MI 398 (581)
T ss_pred HHHHHHHHHHCc------CeEEEEeeHH--HHH-HHHHHHHHHHHhcCCC-EEEEEECCcccCCCccc--cccHHHH-HH
Confidence 356677877632 2456555543 543 3334 23446778999 56666766655433332 2234554 45
Q ss_pred hhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 137 DAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 137 ~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
++. |+.++.= .|+.|+..+++.|+...++|+.|-
T Consensus 399 r~iPnl~V~~P--~d~~e~~~~l~~a~~~~~gP~~ir 433 (581)
T PRK12315 399 SNIPNLVYLAP--TTKEELIAMLEWALTQHEHPVAIR 433 (581)
T ss_pred hcCCCCEEEec--CCHHHHHHHHHHHHhCCCCcEEEE
Confidence 554 8877743 389999999999985447898774
No 209
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=93.53 E-value=1.4 Score=37.40 Aligned_cols=99 Identities=8% Similarity=-0.027 Sum_probs=57.4
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEE-CCCccCCchHHHH-HHHhhhcC--------CCcEEEEEecCCCccccCccc
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLV-GDGESAEGSIWEA-LHFASYYK--------LDNLCVIFDINRLGQSEPTSL 125 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~-GDG~~~~G~~~ea-l~~a~~~~--------lp~liiV~~nn~~~~~~~~~~ 125 (176)
...++.|.|+|++-. ++++++. .|-.. ..++- .+.++.++ +|+ +++..+....-.+.+.
T Consensus 84 q~~vg~AaGlA~~G~------~P~v~~~~~~f~~---ra~dQi~~dva~~~~~~~g~~~~pV-~i~~~~G~~~g~G~tH- 152 (356)
T PLN02683 84 AGFTGIGVGAAYAGL------KPVVEFMTFNFSM---QAIDHIINSAAKTNYMSAGQISVPI-VFRGPNGAAAGVGAQH- 152 (356)
T ss_pred HHHHHHHHHHHHCCC------EEEEEEehhhHHH---HHHHHHHHHHHHhccccCCCccCCE-EEEEeCCCCCCCCCcc-
Confidence 445667888887532 4555553 22221 23333 34555554 994 4555553321122222
Q ss_pred ccccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786 126 QHQTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI 171 (176)
Q Consensus 126 ~~~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI 171 (176)
...+ ..++++. |+.++.= .|..|++..++.|+ ..++|+.|
T Consensus 153 --~~~~-~a~lr~iPnl~V~~P--ad~~e~~~~l~~a~-~~~gPv~i 193 (356)
T PLN02683 153 --SQCF-AAWYSSVPGLKVLAP--YSSEDARGLLKAAI-RDPDPVVF 193 (356)
T ss_pred --ccCH-HHHHhcCCCCEEEEe--CCHHHHHHHHHHHH-hCCCcEEE
Confidence 1223 3566666 8888854 38999999999998 46789887
No 210
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=93.51 E-value=0.74 Score=41.51 Aligned_cols=105 Identities=14% Similarity=0.028 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a 136 (176)
.+.-+|-|.+..... -..+++..|-|.++ ..-++..|...+.|+|++.-+-....+.. ..+...|...++
T Consensus 62 ~A~~~Adgyar~tg~----~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~---~~~q~~d~~~~~ 131 (585)
T CHL00099 62 GAAHAADGYARSTGK----VGVCFATSGPGATN---LVTGIATAQMDSVPLLVITGQVGRAFIGT---DAFQEVDIFGIT 131 (585)
T ss_pred HHHHHHHHHHHhcCC----cEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC---CCccccchhhhh
Confidence 334467777765431 23455555888876 34578899999999766654433222211 111123455667
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR 173 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~ 173 (176)
+.+--...+|+ +++++.+.+++|++. .+||+.|++
T Consensus 132 ~~~tk~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~i 170 (585)
T CHL00099 132 LPIVKHSYVVR--DARDISRIVAEAFYIAKHGRPGPVLIDI 170 (585)
T ss_pred cCceeEEEEeC--CHHHHHHHHHHHHHHHccCCCCeEEEec
Confidence 76654455675 777777777777642 258999986
No 211
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=93.43 E-value=1.1 Score=39.41 Aligned_cols=99 Identities=10% Similarity=0.026 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEE-CCCccCCchHHHHHHHhh--------hcCCCcEEEEEecCCCccccCccccc
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLV-GDGESAEGSIWEALHFAS--------YYKLDNLCVIFDINRLGQSEPTSLQH 127 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~-GDG~~~~G~~~eal~~a~--------~~~lp~liiV~~nn~~~~~~~~~~~~ 127 (176)
..++.|.|+|++-. ++++.+. .+-..+ ..-+-.+.++ .+++| ++|+..|.++...+. .+
T Consensus 200 ~~vg~AaGlA~~G~------rPiv~~~~~~f~~r--a~dQI~n~~ak~~~~sgg~~~~p-Vv~~g~~G~~~~~G~---hh 267 (464)
T PRK11892 200 GFAGIGVGAAFAGL------KPIVEFMTFNFAMQ--AIDQIINSAAKTLYMSGGQMGCP-IVFRGPNGAAARVAA---QH 267 (464)
T ss_pred HHHHHHHHHHhCCC------EEEEEEehHHHHHH--HHHHHHHHHhHHhhhcCCccCCC-EEEEecCCCCCCCCC---cc
Confidence 34667888887532 4566554 222221 1223335555 78999 555566666544332 22
Q ss_pred ccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786 128 QTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI 171 (176)
Q Consensus 128 ~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI 171 (176)
+..+ ..+++.. |++++.= .|+.+.+..++.|+ +.++|++|
T Consensus 268 s~~d-~a~~~~iPgl~V~~P--~d~~d~~~ll~~ai-~~~~Pv~i 308 (464)
T PRK11892 268 SQDY-AAWYSHIPGLKVVAP--YSAADAKGLLKAAI-RDPNPVIF 308 (464)
T ss_pred ccCH-HHHHhhCCCCEEEEe--CCHHHHHHHHHHHh-hCCCcEEE
Confidence 2233 4566666 8888854 38999999999998 46789886
No 212
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=93.37 E-value=0.94 Score=40.54 Aligned_cols=105 Identities=13% Similarity=0.044 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a 136 (176)
.+.-+|-|.+.+... -..+++..|-|.++ ..-++..|...+.|+|++.-+ -....... ......|...++
T Consensus 57 ~A~~~Adgyar~tg~----~gv~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~-~~~~~~~~--~~~q~~d~~~l~ 126 (557)
T PRK08199 57 GAAMMAEAYGKLTGR----PGICFVTRGPGATN---ASIGVHTAFQDSTPMILFVGQ-VARDFRER--EAFQEIDYRRMF 126 (557)
T ss_pred HHHHHHHHHHHhcCC----CEEEEeCCCccHHH---HHHHHHHHhhcCCCEEEEecC-CccccCCC--CcccccCHHHhh
Confidence 334467777776531 23455555888886 445788999999995554432 11111111 111123555667
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR 173 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~ 173 (176)
+.+=-...+|. +++++.+.+++|++. .+||+.|++
T Consensus 127 ~~~tk~~~~v~--~~~~~~~~~~~A~~~A~~~~~GPV~l~i 165 (557)
T PRK08199 127 GPMAKWVAEID--DAARIPELVSRAFHVATSGRPGPVVLAL 165 (557)
T ss_pred hhhhceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 76643445564 777766666666642 358999986
No 213
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=93.36 E-value=1.5 Score=37.85 Aligned_cols=102 Identities=13% Similarity=0.108 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a 136 (176)
.++.+|+|++++- .++.+.+.=.++. ...|.|.+|+-..+|+++++. |.... ++........|+. .+
T Consensus 60 aA~~~aiGAs~aG-------aRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~-~R~~p--~~~~~~~~q~D~~-~~ 126 (390)
T PRK08366 60 SAMAACIGASAAG-------ARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDV-NRAMA--PPWSVWDDQTDSL-AQ 126 (390)
T ss_pred HHHHHHHHHHhhC-------CCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEe-ccCCC--CCCCCcchhhHHH-HH
Confidence 4577899999874 4677777777776 478999999999999544443 23322 2222221223443 23
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEe
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQR 173 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~ 173 (176)
+--||-.+.. .|++|......+|+. +.+-|+++-.
T Consensus 127 ~d~g~i~~~~--~~~QEa~d~t~~Af~lAE~~~~PViv~~ 164 (390)
T PRK08366 127 RDTGWMQFYA--ENNQEVYDGVLMAFKVAETVNLPAMVVE 164 (390)
T ss_pred hhcCEEEEeC--CCHHHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 4447744444 488887777777764 3467887643
No 214
>PRK12474 hypothetical protein; Provisional
Probab=93.35 E-value=0.9 Score=40.29 Aligned_cols=103 Identities=12% Similarity=-0.099 Sum_probs=61.0
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA 138 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a 138 (176)
.-+|-|.+.+... -..+++..|-|.++ ..-++..|...+.|+|++.-..+...... ..+...|...+++.
T Consensus 56 ~~mAdgYaR~tg~----~gv~~~t~GpG~~N---~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~~~~~ 125 (518)
T PRK12474 56 TGAADGYGRIAGK----PAVTLLHLGPGLAN---GLANLHNARRAASPIVNIVGDHAVEHLQY---DAPLTSDIDGFARP 125 (518)
T ss_pred HHHHHHHHHHhCC----CEEEEEccchhHhH---hHHHHHHHhhcCCCEEEEeccCchhhcCC---CCccccCHHHhhhc
Confidence 3456677765431 23445555888775 33468888999999666654322211111 11112356677777
Q ss_pred cCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786 139 FGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR 173 (176)
Q Consensus 139 ~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~ 173 (176)
+--...+++ +++++.+++++|++. ..+|++|++
T Consensus 126 vtk~~~~v~--~~~~~~~~i~rA~~~A~~~~~GPV~l~i 162 (518)
T PRK12474 126 VSRWVHRSA--SAGAVDSDVARAVQAAQSAPGGIATLIM 162 (518)
T ss_pred ccceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 654455664 788777777777642 348999986
No 215
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=93.33 E-value=0.8 Score=40.78 Aligned_cols=104 Identities=14% Similarity=0.066 Sum_probs=60.2
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA 138 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a 138 (176)
.-+|-|.+..... -..+++..|-|.++ ..-++..|...+.|+|++.-+-...... ...+...|...+++.
T Consensus 49 ~~~Adgyar~tg~----~gv~~~t~GpG~~n---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~---~~~~q~~d~~~~~~~ 118 (539)
T TIGR02418 49 AFMAQAVGRITGK----PGVALVTSGPGCSN---LVTGLATANSEGDPVVAIGGQVKRADLL---KLTHQSMDNVALFRP 118 (539)
T ss_pred HHHHHHHHHHhCC----ceEEEECCCCCHhH---HHHHHHHHhhcCCCEEEEeCCCcccccc---cCcccccchhhhhhc
Confidence 3356676665431 23455555888776 3457888999999966554432221111 111222345667777
Q ss_pred cCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786 139 FGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG 174 (176)
Q Consensus 139 ~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~ 174 (176)
+=-...+++ +++++.+.+++|++. .+||+.|++-
T Consensus 119 ~tk~~~~i~--~~~~~~~~~~~A~~~a~~~~~GPV~l~iP 156 (539)
T TIGR02418 119 ITKYSAEVQ--DPDALSEVVANAFRAAESGKPGAAFVSLP 156 (539)
T ss_pred ceeeeeecC--CHHHHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 644445664 777776666666542 3589999863
No 216
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=93.21 E-value=0.63 Score=41.84 Aligned_cols=108 Identities=16% Similarity=0.060 Sum_probs=63.3
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccC----c-cccccc-HH
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEP----T-SLQHQT-EV 131 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~----~-~~~~~~-~~ 131 (176)
+.-+|-|.+..... -..+++..|-|.++ ..-++..|...+.|+|++.-+-........ . ...+.. .|
T Consensus 62 A~~~Adgyar~tgk----~gv~~~t~GPG~~N---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d 134 (569)
T PRK08327 62 AISMAHGYALVTGK----PQAVMVHVDVGTAN---ALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRD 134 (569)
T ss_pred HHHHHHHHHHhhCC----CeEEEEecCHHHHH---HHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhh
Confidence 34467777765431 23455556888876 445799999999996655543221111110 0 001112 36
Q ss_pred HHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786 132 YRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG 174 (176)
Q Consensus 132 ~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~ 174 (176)
...+++.+--...+++ +++++.+++++|+.. .+||++|++-
T Consensus 135 ~~~~~~~vtk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~i~iP 179 (569)
T PRK08327 135 QGGLVREYVKWDYEIR--RGDQIGEVVARAIQIAMSEPKGPVYLTLP 179 (569)
T ss_pred HHHHHhhhhhhhcccC--CHHHHHHHHHHHHHHHhcCCCCCEEEECc
Confidence 6677777654555675 777877777777652 3689999863
No 217
>PRK05858 hypothetical protein; Provisional
Probab=93.18 E-value=1.2 Score=39.85 Aligned_cols=106 Identities=12% Similarity=-0.042 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a 136 (176)
.+.-+|-|.+.+... -..+++..|=|.++ ..-++..|...+.|+|++ .-+......+.. .....|...++
T Consensus 53 ~A~~~AdGyar~tg~----~gv~~~t~GpG~~n---~~~~i~~A~~~~~Pvl~i-~g~~~~~~~~~~--~~q~~d~~~l~ 122 (542)
T PRK05858 53 TAAFAAEAWAKLTRV----PGVAVLTAGPGVTN---GMSAMAAAQFNQSPLVVL-GGRAPALRWGMG--SLQEIDHVPFV 122 (542)
T ss_pred HHHHHHHHHHHhcCC----CeEEEEcCCchHHH---HHHHHHHHHhcCCCEEEE-eCCCCcccCCCC--CCcccchhhhh
Confidence 334467788776531 22344444676665 345789999999995544 322222111111 11113455677
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEee
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQRG 174 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~~ 174 (176)
+.+--...+++ +++++.+.+++|+. ..+||+.|++-
T Consensus 123 ~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 162 (542)
T PRK05858 123 APVTKFAATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFP 162 (542)
T ss_pred hhhhceEEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcC
Confidence 77765566775 67666666666654 23589999863
No 218
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=93.17 E-value=0.74 Score=41.64 Aligned_cols=104 Identities=11% Similarity=-0.029 Sum_probs=58.0
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA 138 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a 138 (176)
.-+|-|.+.+... -..+++..|-|.++ ..-++..|...+.|+|++.-+-...... ...+...|...+++.
T Consensus 55 ~~~Adgyar~tg~----~gv~~~t~GPG~~n---~~~gi~~A~~d~vPvl~I~G~~~~~~~~---~~~~q~~d~~~l~~~ 124 (597)
T PRK08273 55 AFMAVAHAKFTGE----VGVCLATSGPGAIH---LLNGLYDAKLDHVPVVAIVGQQARAALG---GHYQQEVDLQSLFKD 124 (597)
T ss_pred HHHHHHHHHHhCC----CEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCchhhcC---CCCCCccCHHHHHHH
Confidence 3467777766531 23455555888887 3456889999999966554321111111 111112344556666
Q ss_pred cC-ceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEee
Q psy786 139 FG-FNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQRG 174 (176)
Q Consensus 139 ~G-~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~ 174 (176)
.- -...+++ +++++.+.+++|+. ..++|+.|++-
T Consensus 125 vt~k~~~~v~--~~~~~~~~l~~A~~~A~~~~gPV~i~iP 162 (597)
T PRK08273 125 VAGAFVQMVT--VPEQLRHLVDRAVRTALAERTVTAVILP 162 (597)
T ss_pred HHHHHeeEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 54 3344664 66665555555543 24689999874
No 219
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=93.12 E-value=1.5 Score=36.70 Aligned_cols=100 Identities=11% Similarity=-0.003 Sum_probs=55.4
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHH-HHHhhhc--------CCCcEEEEEecCCCccccCcccc
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEA-LHFASYY--------KLDNLCVIFDINRLGQSEPTSLQ 126 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~ea-l~~a~~~--------~lp~liiV~~nn~~~~~~~~~~~ 126 (176)
...++.|.|+|+.-. ++++++..- .|.+ ..++- .+.++.. ++| +++...+..++..+.+..+
T Consensus 61 ~~~vg~AaGlA~~G~------~Piv~~~~~-~f~~-ra~dQi~~d~a~~~~~~~~~~~v~-vv~~~~~g~~~~~G~tH~~ 131 (327)
T PRK09212 61 HGFAGLAVGAAFAGL------RPIVEFMTF-NFSM-QAIDQIVNSAAKTNYMSGGQLKCP-IVFRGPNGAAARVAAQHSQ 131 (327)
T ss_pred HHHHHHHHHHHHcCC------eeEEEeehh-hHHH-HHHHHHHHHHHHHhhccCCCcCcc-EEEEeCCCCCCCCCccccc
Confidence 344667888887432 466665531 1211 12222 2333333 566 3344444444443333222
Q ss_pred cccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786 127 HQTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI 171 (176)
Q Consensus 127 ~~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI 171 (176)
. +..++++. |+.++.= .|+.+++.+++.|++ .++|++|
T Consensus 132 ~----~ea~~r~iP~l~V~~P--~d~~e~~~~l~~a~~-~~~Pv~i 170 (327)
T PRK09212 132 C----YAAWYSHIPGLKVVAP--YFAADCKGLLKTAIR-DPNPVIF 170 (327)
T ss_pred C----HHHHHhcCCCCEEEee--CCHHHHHHHHHHHHh-CCCcEEE
Confidence 1 23566665 8887743 389999999999984 5899887
No 220
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=92.84 E-value=0.96 Score=40.41 Aligned_cols=106 Identities=11% Similarity=-0.035 Sum_probs=56.9
Q ss_pred HHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc--ccccc-cHHHHHHHh
Q psy786 61 VAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT--SLQHQ-TEVYRKRLD 137 (176)
Q Consensus 61 ~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~--~~~~~-~~~~~~~a~ 137 (176)
+|-|.|.+... -..+++..|-|.++ ..-++..|...++|+|++.-+-......... +.+.. .++..++++
T Consensus 53 ~Adgyar~tg~----~gv~~~t~GpG~~n---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (535)
T TIGR03394 53 AADAAARYRGT----LGVAAVTYGAGAFN---MVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFK 125 (535)
T ss_pred HHhHHHHhhCC----ceEEEEecchHHHh---hhhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhh
Confidence 56677765531 23556666888887 3456889999999965554221111111100 01111 123456677
Q ss_pred hcCceEEEec-CC-CHHHHHHHHHHHHhhCCCcEEEEee
Q psy786 138 AFGFNAVVVD-GH-DVEHLVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 138 a~G~~~~~vd-G~-d~~~l~~al~~a~~~~~~P~lI~~~ 174 (176)
..--...+|. .. -++.+.+|++.|+. .++|++|++-
T Consensus 126 ~vtk~~~~v~~~~~~~~~~~~A~~~a~~-~~gPv~i~iP 163 (535)
T TIGR03394 126 EVTCDQAVLDDPATAPAEIARVLGSARE-LSRPVYLEIP 163 (535)
T ss_pred hheEEEEEeCChHHhHHHHHHHHHHHHH-CCCCEEEEec
Confidence 6643344553 11 13455666666653 5689999873
No 221
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=92.49 E-value=1.7 Score=38.97 Aligned_cols=100 Identities=12% Similarity=0.037 Sum_probs=55.6
Q ss_pred HHHHHHHHHhchhcCCCcceEEEE--ECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCL--VGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~--~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a 136 (176)
.-+|-|.+.... ++.+|+ .|=|.++ ..-++..|..-+.|+|++.-+ ......+. ..+...|..+++
T Consensus 54 ~~~Adgyar~tg------~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~-~~~~~~~~--~~~Q~~d~~~l~ 121 (574)
T PRK09124 54 AFAAGAEAQLTG------ELAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAH-IPSSEIGS--GYFQETHPQELF 121 (574)
T ss_pred HHHHHHHHHhhC------CcEEEEECCCCCHHH---HHHHHHHHhhcCCCEEEEecC-CccccCCC--CCccccChhhhc
Confidence 346777776542 345555 4777665 334688888999996555432 12111111 111123445667
Q ss_pred hhcCceEEEecCCCHHH----HHHHHHHHHhhCCCcEEEEe
Q psy786 137 DAFGFNAVVVDGHDVEH----LVKVSSFKLQKAIGCVWIQR 173 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~----l~~al~~a~~~~~~P~lI~~ 173 (176)
+..-....+++ ++++ +.+|++.|+. .++|+.|++
T Consensus 122 ~~itk~~~~v~--~~~~~~~~i~~A~~~A~~-~~gPV~l~i 159 (574)
T PRK09124 122 RECSHYCELVS--NPEQLPRVLAIAMRKAIL-NRGVAVVVL 159 (574)
T ss_pred ccceeeeEEeC--CHHHHHHHHHHHHHHHhc-CCCCEEEEe
Confidence 76544444564 5555 4455555542 468999986
No 222
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=92.46 E-value=1.6 Score=40.01 Aligned_cols=99 Identities=14% Similarity=0.088 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHH-HHhhhcCCCcEEEEEecCCCc-cccCcccccccHHHHHH
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEAL-HFASYYKLDNLCVIFDINRLG-QSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal-~~a~~~~lp~liiV~~nn~~~-~~~~~~~~~~~~~~~~~ 135 (176)
.++.|.|+|+.- -++++++ =+.|.+ ..++-+ +.++..++| ++++.+..++. ..+++.. ...|+. +
T Consensus 411 ~Vg~AaGLA~~G------~rPvv~~--fs~Fl~-RA~DQI~~dva~~~lp-V~~v~~~aG~~g~dG~TH~--~~~Dia-~ 477 (641)
T PLN02234 411 AVTFAAGLACEG------LKPFCTI--YSSFMQ-RAYDQVVHDVDLQKLP-VRFAIDRAGLMGADGPTHC--GAFDVT-F 477 (641)
T ss_pred HHHHHHHHHHCC------CeEEEEe--hHHHHH-HHHHHHHHHHhhcCCC-EEEEEeCCccCCCCCcccc--ccHHHH-H
Confidence 355677777732 2455555 345543 333333 466788999 45666655542 1222221 234544 4
Q ss_pred Hhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786 136 LDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI 171 (176)
Q Consensus 136 a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI 171 (176)
++.+ |+.++.- .|+.|+..+++.|+...++|++|
T Consensus 478 lr~iPnl~V~~P--sd~~E~~~~l~~a~~~~~~Pv~i 512 (641)
T PLN02234 478 MACLPNMIVMAP--SDEAELFNMVATAAAIDDRPSCF 512 (641)
T ss_pred HhcCCCCEEEee--CCHHHHHHHHHHHHhCCCCCEEE
Confidence 4444 8888754 38999999999987555688776
No 223
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=92.38 E-value=1.5 Score=39.43 Aligned_cols=103 Identities=12% Similarity=-0.023 Sum_probs=58.5
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA 138 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a 138 (176)
.-+|-|.+..... -..+++..|-|.++ ..-++..|...++|+|++.-+-...... .......|...+++.
T Consensus 51 ~~~Adgyar~tgk----~gv~~~t~GPG~~n---~~~~i~~A~~~~~Pvl~I~G~~~~~~~~---~~~~q~id~~~~~~~ 120 (575)
T TIGR02720 51 ALAAAADAKLTGK----IGVCFGSAGPGATH---LLNGLYDAKEDHVPVLALVGQVPTTGMN---MDTFQEMNENPIYAD 120 (575)
T ss_pred HHHHHHHHHhhCC----ceEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCC---CCCcceechhhhhhh
Confidence 3356676665431 23455556887776 4457889999999966554332222211 111112344567777
Q ss_pred cCceEEEecCCCHHH----HHHHHHHHHhhCCCcEEEEee
Q psy786 139 FGFNAVVVDGHDVEH----LVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 139 ~G~~~~~vdG~d~~~----l~~al~~a~~~~~~P~lI~~~ 174 (176)
+--...++. ++++ +.+|++.|.. .+||+.|++-
T Consensus 121 vtk~~~~v~--~~~~~~~~i~~A~~~A~~-~~GPV~l~iP 157 (575)
T TIGR02720 121 VAVYNRTAM--TAESLPHVIDEAIRRAYA-HNGVAVVTIP 157 (575)
T ss_pred cceEEEEeC--CHHHHHHHHHHHHHHHhh-CCCCEEEEEC
Confidence 654445663 4444 5556665553 5699999873
No 224
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=92.37 E-value=0.57 Score=40.59 Aligned_cols=105 Identities=14% Similarity=0.022 Sum_probs=58.5
Q ss_pred HHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhc
Q psy786 60 SVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAF 139 (176)
Q Consensus 60 ~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~ 139 (176)
-+|-|.+.+... -..+++..|-|.++ ..-++..|...+.|+|++.-+-...... . ......|..++++.+
T Consensus 52 ~mAdgyar~tg~----~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~g~~~~~~~~-~--~~~q~~d~~~~~~~~ 121 (432)
T TIGR00173 52 FFALGLAKASGR----PVAVVCTSGTAVAN---LLPAVIEASYSGVPLIVLTADRPPELRG-C--GANQTIDQPGLFGSY 121 (432)
T ss_pred HHHHHHHhccCC----CEEEEECCcchHhh---hhHHHHHhcccCCcEEEEeCCCCHHHhC-C--CCCcccchhhHHhhc
Confidence 367777776431 23455555777776 3457889999999966554332211111 0 111123455667766
Q ss_pred CceEEEec-CCC-------HHHHHHHHHHHHhhCCCcEEEEee
Q psy786 140 GFNAVVVD-GHD-------VEHLVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 140 G~~~~~vd-G~d-------~~~l~~al~~a~~~~~~P~lI~~~ 174 (176)
--...+|. -.+ ++.+.+|++.|....+||+.|++-
T Consensus 122 tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 164 (432)
T TIGR00173 122 VRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVP 164 (432)
T ss_pred cceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCC
Confidence 54445553 122 245666666665335689999874
No 225
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=92.31 E-value=1.3 Score=39.35 Aligned_cols=106 Identities=8% Similarity=-0.101 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
+.-+|.|.+.+... -..+++..|-|..+ ..-++..|...+.|+|++ .-.-.+....... .....|...+++
T Consensus 60 A~~~Adgyar~tg~----~~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i-~g~~~~~~~~~~~-~~~~~d~~~l~~ 130 (530)
T PRK07092 60 VVGMADGYAQATGN----AAFVNLHSAAGVGN---AMGNLFTAFKNHTPLVIT-AGQQARSILPFEP-FLAAVQAAELPK 130 (530)
T ss_pred HHHHHHHHHHHhCC----ceEEEeccCchHHH---HHHHHHHHhhcCCCEEEE-ecCCcccccCccc-hhcccCHHHhhc
Confidence 34467788776531 23344445777774 445799999999996544 3222222211111 011124456677
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG 174 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~ 174 (176)
.+--...+++ +++++.+.+++|+.. .+||+.|++-
T Consensus 131 ~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 169 (530)
T PRK07092 131 PYVKWSIEPA--RAEDVPAAIARAYHIAMQPPRGPVFVSIP 169 (530)
T ss_pred ccccceeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcc
Confidence 6643344563 677766666666542 3589999874
No 226
>PLN02790 transketolase
Probab=92.10 E-value=1.5 Score=40.23 Aligned_cols=102 Identities=10% Similarity=0.069 Sum_probs=61.5
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCcc--ccCcccccccHHHHHH
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQ--SEPTSLQHQTEVYRKR 135 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~--~~~~~~~~~~~~~~~~ 135 (176)
.+..|.|+|+.-. .-+++++.+ .-|.. ...+++..++..++| +++|+...+.+. ++++. ++..|++ +
T Consensus 404 mv~~AaGlA~~G~----G~~P~~~tf--~~F~~-~~~~~ir~~al~~lp-V~~v~thdg~~~G~DG~TH--q~iedla-~ 472 (654)
T PLN02790 404 MGAICNGIALHSS----GLIPYCATF--FVFTD-YMRAAMRLSALSEAG-VIYVMTHDSIGLGEDGPTH--QPIEHLA-S 472 (654)
T ss_pred HHHHHHHHHhcCC----CcEEEEEec--HHHHH-HHHHHHHHHHhcCCC-eEEEEECCceeecCCCCCc--ccHHHHH-H
Confidence 4567778777310 123555433 12222 356678888899999 555564444443 33332 2334554 4
Q ss_pred Hhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 136 LDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 136 a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
.++. ++.+++= .|..|+..+++.|++..++|+.|-
T Consensus 473 lR~iPnl~V~~P--aD~~E~~~~l~~al~~~~gP~~ir 508 (654)
T PLN02790 473 LRAMPNILMLRP--ADGNETAGAYKVAVTNRKRPTVLA 508 (654)
T ss_pred hcCCCCcEEEeC--CCHHHHHHHHHHHHHcCCCCEEEE
Confidence 5555 7777653 389999999999986567898774
No 227
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=91.41 E-value=2.4 Score=36.32 Aligned_cols=103 Identities=14% Similarity=0.073 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHH-HHH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVY-RKR 135 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~-~~~ 135 (176)
.++..|+|++++= .++++.+.=+++. ...|.+.+++-..+|+++++++ .-+-++.........|+ ..+
T Consensus 58 aA~~~a~GAs~aG-------~Ra~taTSg~G~~--lm~E~~~~a~~~e~P~V~~~~~--R~GpstG~p~~~~q~D~~~~~ 126 (375)
T PRK09627 58 SGISVALGASMSG-------VKSMTASSGPGIS--LKAEQIGLGFIAEIPLVIVNVM--RGGPSTGLPTRVAQGDVNQAK 126 (375)
T ss_pred HHHHHHHHHHhhC-------CCEEeecCCchHH--HHhhHHHHHHhccCCEEEEEec--cCCCcCCCCCccchHHHHHHh
Confidence 4577889999874 3677777666665 3678999999999996555444 22222111111111233 222
Q ss_pred Hhhc---CceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEE
Q psy786 136 LDAF---GFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQ 172 (176)
Q Consensus 136 a~a~---G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~ 172 (176)
..++ +|-. ..-.|++|......+|++ +-+-|+++-
T Consensus 127 ~~~hgd~~~iv--l~p~~~qEa~d~t~~Af~lAE~~~~PViv~ 167 (375)
T PRK09627 127 NPTHGDFKSIA--LAPGSLEEAYTETVRAFNLAERFMTPVFLL 167 (375)
T ss_pred cCCCCCcCcEE--EeCCCHHHHHHHHHHHHHHHHHHcCceEEe
Confidence 2223 4433 344588888887777765 235688764
No 228
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=91.37 E-value=2.1 Score=38.17 Aligned_cols=107 Identities=10% Similarity=0.032 Sum_probs=58.7
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCcccc-C---cc-cccccHHHH
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSE-P---TS-LQHQTEVYR 133 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~-~---~~-~~~~~~~~~ 133 (176)
.-+|-|.+.+.. -..+++..|-|.++ ..-++..|..-+.|+|++.-+-....... . .. ......++.
T Consensus 52 ~~mAdgyar~tg-----~gv~~~t~GPG~~n---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~~ 123 (539)
T TIGR03393 52 AYAADGYARCKG-----AAALLTTFGVGELS---AINGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHFY 123 (539)
T ss_pred HHHhhhhhhhcC-----ceEEEEecCccHHH---HhhHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHHH
Confidence 345667776542 23455566888886 33468889999999655543211111000 0 00 000112334
Q ss_pred HHHhhcCceEEEecCCC-HHHHHHHHHHHHhhCCCcEEEEee
Q psy786 134 KRLDAFGFNAVVVDGHD-VEHLVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 134 ~~a~a~G~~~~~vdG~d-~~~l~~al~~a~~~~~~P~lI~~~ 174 (176)
++++..--....++-.+ ++.+.++++.|+. .++|+.|++-
T Consensus 124 ~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~-~~gPv~l~iP 164 (539)
T TIGR03393 124 RMAAEVTVAQAVLTEQNATAEIDRVITTALR-ERRPGYLMLP 164 (539)
T ss_pred HHhhceEEEEEEeChhhhHHHHHHHHHHHHh-cCCCEEEEec
Confidence 45554422222333234 6889999999984 5689999874
No 229
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=91.20 E-value=2.5 Score=36.51 Aligned_cols=102 Identities=14% Similarity=0.134 Sum_probs=62.2
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~ 135 (176)
-.++.+++|++++= .++.+.+-=.++. ..+|.|..++-.++|++++ +-|...+. +........|+. .
T Consensus 60 ~aA~~~~~GAs~aG-------aRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~v-v~~R~~~~--p~~i~~d~~D~~-~ 126 (394)
T PRK08367 60 HSAISACVGASAAG-------VRTFTATASQGLA--LMHEVLFIAAGMRLPIVMA-IGNRALSA--PINIWNDWQDTI-S 126 (394)
T ss_pred HHHHHHHHHHHhhC-------CCeEeeeccchHH--HHhhHHHHHHHccCCEEEE-ECCCCCCC--CCCcCcchHHHH-h
Confidence 34577889999874 3566666666665 4678999999999995444 33333332 222111123432 4
Q ss_pred HhhcCceEEEecCCCHHHHHHHHHHHHhhC---C--CcEEEE
Q psy786 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQKA---I--GCVWIQ 172 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~~---~--~P~lI~ 172 (176)
.+..||-.+.. .|++|..+-...|++-+ + -|+++-
T Consensus 127 ~rd~g~~~~~a--~~~QEa~D~~~~Af~lAE~~~~~~Pviv~ 166 (394)
T PRK08367 127 QRDTGWMQFYA--ENNQEALDLILIAFKVAEDERVLLPAMVG 166 (394)
T ss_pred ccccCeEEEeC--CCHHHHHHHHHHHHHHHHHhCcCCCEEEE
Confidence 46677766655 48888777777776422 2 587763
No 230
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=91.06 E-value=2.4 Score=35.15 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=66.8
Q ss_pred CCcccch-hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHH-hhhcCCCcEEEEEecCCCccccCcccccc
Q psy786 51 GTGSLGQ-GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHF-ASYYKLDNLCVIFDINRLGQSEPTSLQHQ 128 (176)
Q Consensus 51 ~~g~~G~-~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~-a~~~~lp~liiV~~nn~~~~~~~~~~~~~ 128 (176)
..|..-+ -++.|.|+|++-+ ++.++ +=+.|.++..||=+.. .++.+|| +-+|..+.+++.......-+.
T Consensus 53 NvGIaEQ~mvg~AAGLA~~Gk------~Pfv~--tfa~F~s~Ra~EQir~~iay~~ln-VKiv~t~~G~t~g~dG~sHq~ 123 (312)
T COG3958 53 NVGIAEQDMVGTAAGLALAGK------KPFVS--TFAAFLSRRAWEQIRNSIAYNNLN-VKIVATHAGVTYGEDGSSHQA 123 (312)
T ss_pred ecchHHHHHHHHHHHHHhcCC------Cceee--chHHHHHHHHHHHHHHHhhhccCC-eEEEEecCCcccCCCCccchh
Confidence 3455533 3567888888654 24444 4578888778886654 4467888 566677777654322222223
Q ss_pred cHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 129 TEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 129 ~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
.+|++ +.+++ .+.++.- .|.-+.++++..+. ..+||+.+-
T Consensus 124 ~EDia-imR~lpn~~V~~P--~D~v~~~~i~~~~~-~~~GP~Y~R 164 (312)
T COG3958 124 LEDIA-IMRGLPNMTVIAP--ADAVETRAILDQIA-DYKGPVYMR 164 (312)
T ss_pred HHHHH-HHhcCCCceEEcc--CcHHHHHHHHHHHH-hcCCCEEEE
Confidence 45654 66766 4555532 36778888888876 467887654
No 231
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=90.53 E-value=4.5 Score=35.00 Aligned_cols=101 Identities=15% Similarity=0.085 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a 136 (176)
.++.+++|++++= .++.+.+-=.++. ...|.|..|+-.++|++++++ +.+..- .........|+.. +
T Consensus 67 ~A~~~~~GAs~aG-------aRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V~~~~-~R~~~~--~~~i~~d~~D~~~-~ 133 (407)
T PRK09622 67 AAMSACVGAAAAG-------GRVATATSSQGLA--LMVEVLYQASGMRLPIVLNLV-NRALAA--PLNVNGDHSDMYL-S 133 (407)
T ss_pred HHHHHHHHHHhhC-------cCEEeecCcchHH--HHhhHHHHHHHhhCCEEEEEe-ccccCC--CcCCCchHHHHHH-H
Confidence 4577889999874 3677777666665 468999999999999544443 344321 1222222234433 3
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHhh---C--CCcEEEE
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQK---A--IGCVWIQ 172 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~---~--~~P~lI~ 172 (176)
+.-||-.+.. .|++|..+....|++- . +-|+++-
T Consensus 134 r~~g~ivl~p--~s~QEa~d~~~~Af~lAE~~~~~~Pviv~ 172 (407)
T PRK09622 134 RDSGWISLCT--CNPQEAYDFTLMAFKIAEDQKVRLPVIVN 172 (407)
T ss_pred hcCCeEEEeC--CCHHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 5556665544 4899888888777652 2 6788764
No 232
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=90.46 E-value=1.5 Score=31.78 Aligned_cols=73 Identities=23% Similarity=0.165 Sum_probs=46.1
Q ss_pred cceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHH
Q psy786 76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLV 155 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~ 155 (176)
.++.+.++.||.-.. ...+.+..+.+.++++.++-+.... .. ...+..+++.-|..++.++ .+.+++.
T Consensus 99 ~~~~iv~iTDG~~~~-~~~~~~~~~~~~~i~i~~v~~~~~~-~~---------~~~l~~la~~tgG~~~~~~-~~~~~l~ 166 (172)
T PF13519_consen 99 RRRAIVLITDGEDNS-SDIEAAKALKQQGITIYTVGIGSDS-DA---------NEFLQRLAEATGGRYFHVD-NDPEDLD 166 (172)
T ss_dssp EEEEEEEEES-TTHC-HHHHHHHHHHCTTEEEEEEEES-TT--E---------HHHHHHHHHHTEEEEEEE--SSSHHHH
T ss_pred CceEEEEecCCCCCc-chhHHHHHHHHcCCeEEEEEECCCc-cH---------HHHHHHHHHhcCCEEEEec-CCHHHHH
Confidence 578999999998663 3456666666666663333222111 00 2457788888999999884 2668888
Q ss_pred HHHHH
Q psy786 156 KVSSF 160 (176)
Q Consensus 156 ~al~~ 160 (176)
+++++
T Consensus 167 ~~~~~ 171 (172)
T PF13519_consen 167 DAFQQ 171 (172)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88875
No 233
>PRK06154 hypothetical protein; Provisional
Probab=90.44 E-value=2.6 Score=37.87 Aligned_cols=101 Identities=11% Similarity=-0.030 Sum_probs=56.5
Q ss_pred HHHHHHHHhchhcCCCcceEE--EEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 60 SVAAGMAYVGKYFDKASYRTY--CLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 60 ~~AvG~A~a~~~~~~~~~~vv--~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
-+|-|.+.... .+++.+ +..|-|.++ ..-++..|...+.|+|++.-.......... . ..+...+++
T Consensus 68 ~mAdgyar~t~----g~~~gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~-~----~~d~~~~~~ 135 (565)
T PRK06154 68 HMADGYARATS----GERVGVFAVQYGPGAEN---AFGGVAQAYGDSVPVLFLPTGYPRGSTDVA-P----NFESLRNYR 135 (565)
T ss_pred HHHHHHHHhcC----CCCCEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccccCC-C----CcchhhhHh
Confidence 35666665431 012444 445888776 445789999999996555432221111110 0 123345666
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEee
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQRG 174 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~~ 174 (176)
.+--...+|+ +++++.+.+++|++ ..+||++|++-
T Consensus 136 ~vtk~~~~v~--~~~~~~~~i~~A~~~A~s~~~GPV~l~iP 174 (565)
T PRK06154 136 HITKWCEQVT--LPDEVPELMRRAFTRLRNGRPGPVVLELP 174 (565)
T ss_pred hcceeEEECC--CHHHHHHHHHHHHHHHhcCCCceEEEecc
Confidence 6644455664 67776666666654 23589999874
No 234
>PRK12754 transketolase; Reviewed
Probab=90.35 E-value=2.9 Score=38.52 Aligned_cols=103 Identities=14% Similarity=0.100 Sum_probs=65.8
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA 138 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a 138 (176)
.++|.|+|+... -++.++.+ ..|.. ...+.+..++..++| +++|....+++.......-++.+|++ +.++
T Consensus 415 v~iaaGlA~~~G-----~~Pf~~tf--~~F~~-r~~~qir~~a~~~l~-V~~v~th~gi~~G~DG~THq~iEdla-~lR~ 484 (663)
T PRK12754 415 TAIANGIALHGG-----FLPYTSTF--LMFVE-YARNAVRMAALMKQR-QVMVYTHDSIGLGEDGPTHQPVEQVA-SLRV 484 (663)
T ss_pred HHHHhhHHhcCC-----CeEEEEee--HHHHH-HHHHHHHHHHHcCCC-eEEEEECCccccCCCCCCcccHHHHH-HHhc
Confidence 456778887322 12333333 35654 678889898999999 56666666666532222223345555 4555
Q ss_pred c-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEe
Q psy786 139 F-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQR 173 (176)
Q Consensus 139 ~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~ 173 (176)
. ++.+++= .|..|+..+++.|++..++|+.|-.
T Consensus 485 iPn~~V~~P--aD~~E~~~~~~~a~~~~~gP~yirl 518 (663)
T PRK12754 485 TPNMSTWRP--CDQVESAVAWKYGVERQDGPTALIL 518 (663)
T ss_pred CCCcEEecC--CCHHHHHHHHHHHHhCCCCCEEEEe
Confidence 5 7777753 3899999999999865578987643
No 235
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=90.22 E-value=5.3 Score=33.96 Aligned_cols=99 Identities=13% Similarity=0.081 Sum_probs=54.9
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEE-ECCCccCCchHHHHH-HHhhh--------cCCCcEEEEEecCCCccccCccc
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCL-VGDGESAEGSIWEAL-HFASY--------YKLDNLCVIFDINRLGQSEPTSL 125 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~-~GDG~~~~G~~~eal-~~a~~--------~~lp~liiV~~nn~~~~~~~~~~ 125 (176)
...++.|.|+|+.-. ++++++ ..| |.+ ..++-+ +.++. +++| ++++.....++..+.+..
T Consensus 92 q~~vg~AaGlA~~G~------~Pvv~~~fa~--Fl~-ra~dQi~~d~a~~~~~~~g~~~v~-vv~~~~~g~~g~~G~tHs 161 (355)
T PTZ00182 92 QGFAGFAIGAAMNGL------RPIAEFMFAD--FIF-PAFDQIVNEAAKYRYMSGGQFDCP-IVIRGPNGAVGHGGAYHS 161 (355)
T ss_pred HHHHHHHHHHHhCCC------EEEEEechhh--HHH-HHHHHHHHHHHHhhcccCCCccCC-EEEEeCCCCCCCCCCccc
Confidence 344667788887532 455554 333 332 223322 23333 3555 333333333444443332
Q ss_pred ccccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786 126 QHQTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI 171 (176)
Q Consensus 126 ~~~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI 171 (176)
+ .+..+.+++ |+.++.- .|+.+++.+++.+++ .++|++|
T Consensus 162 ~----~~ea~lr~iPn~~V~~P--sd~~e~~~~l~~a~~-~~~P~~i 201 (355)
T PTZ00182 162 Q----SFEAYFAHVPGLKVVAP--SDPEDAKGLLKAAIR-DPNPVVF 201 (355)
T ss_pred c----hHHHHHhcCCCCEEEee--CCHHHHHHHHHHHHh-CCCcEEE
Confidence 2 223566766 8888755 389999999999984 5799876
No 236
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=89.83 E-value=3.9 Score=28.81 Aligned_cols=76 Identities=18% Similarity=0.103 Sum_probs=42.3
Q ss_pred HHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEE--ecCCC-HHHHHHHHHHHHhhCCCcE
Q psy786 93 IWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVV--VDGHD-VEHLVKVSSFKLQKAIGCV 169 (176)
Q Consensus 93 ~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~--vdG~d-~~~l~~al~~a~~~~~~P~ 169 (176)
..+.+..+++.+.. .|+||..-+-.. .+....+..+.+++.|+.++. |.+.+ ..+-.+++.++++...+|+
T Consensus 16 ~~~d~~~la~~Gfk---tVInlRpd~E~~---~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pv 89 (110)
T PF04273_consen 16 SPEDLAQLAAQGFK---TVINLRPDGEEP---GQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLPKPV 89 (110)
T ss_dssp -HHHHHHHHHCT-----EEEE-S-TTSTT---T-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSE
T ss_pred CHHHHHHHHHCCCc---EEEECCCCCCCC---CCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCE
Confidence 34557777777654 556655433321 122234577889999999884 44333 3456667778887778999
Q ss_pred EEEee
Q psy786 170 WIQRG 174 (176)
Q Consensus 170 lI~~~ 174 (176)
+++=+
T Consensus 90 l~hC~ 94 (110)
T PF04273_consen 90 LAHCR 94 (110)
T ss_dssp EEE-S
T ss_pred EEECC
Confidence 98743
No 237
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=88.97 E-value=6.5 Score=33.01 Aligned_cols=36 Identities=8% Similarity=0.073 Sum_probs=28.2
Q ss_pred HHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786 133 RKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI 171 (176)
Q Consensus 133 ~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI 171 (176)
..+++.+ |++++.- .|+.+++..++.|+ +.++|++|
T Consensus 134 ea~~~~iPgl~V~~P--sd~~d~~~~l~~a~-~~~~Pv~i 170 (327)
T CHL00144 134 ESYFQSVPGLQIVAC--STPYNAKGLLKSAI-RSNNPVIF 170 (327)
T ss_pred HHHHhcCCCCEEEEe--CCHHHHHHHHHHHH-hCCCcEEE
Confidence 4566665 8888755 38999999999997 46799887
No 238
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=88.55 E-value=5.3 Score=36.25 Aligned_cols=99 Identities=15% Similarity=0.124 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhh--hcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFAS--YYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~--~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~ 135 (176)
++..|+|++++- .++++.+-=.++. ...|.|..++ ...+|+++++.+..+-+ + .+....|.. .
T Consensus 58 a~~~~~GAs~aG-------~ra~t~ts~~Gl~--~~~e~l~~~~~~g~~~~iV~~~~~~~gp~---~--~~~~q~d~~-~ 122 (595)
T TIGR03336 58 AVEVAAGAAWSG-------LRAFCTMKHVGLN--VAADPLMTLAYTGVKGGLVVVVADDPSMH---S--SQNEQDTRH-Y 122 (595)
T ss_pred HHHHHHHHHhcC-------cceEEEccCCchh--hhHHHhhhhhhhcCcCceEEEEccCCCCc---c--chhhHhHHH-H
Confidence 466788988864 3566666666664 3456666555 33677665555542222 1 111122322 4
Q ss_pred HhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEe
Q psy786 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQR 173 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~ 173 (176)
++..+|.++.- .|++|.++...+|++ +.+-|+++-.
T Consensus 123 ~~~~~~~vl~p--~~~qE~~d~~~~Af~lae~~~~PV~v~~ 161 (595)
T TIGR03336 123 AKFAKIPCLEP--STPQEAKDMVKYAFELSEKFGLPVILRP 161 (595)
T ss_pred HHhcCCeEECC--CCHHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 55568886654 489998888888875 3467887643
No 239
>PLN02573 pyruvate decarboxylase
Probab=88.41 E-value=5.9 Score=35.80 Aligned_cols=104 Identities=13% Similarity=0.058 Sum_probs=55.5
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccC-c--cc---ccccHHH
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEP-T--SL---QHQTEVY 132 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~-~--~~---~~~~~~~ 132 (176)
.-+|-|.+.+.. -..+++..|=|.++ ..-++..|...+.|+|++.-. ........ . +. .......
T Consensus 67 ~~mAdgyaR~tg-----~gv~~~t~GpG~~n---~~~gla~A~~d~~Pvl~I~G~-~~~~~~~~~~~~~~~~~~~~~~~~ 137 (578)
T PLN02573 67 GYAADGYARARG-----VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGG-PNSNDYGTNRILHHTIGLPDFSQE 137 (578)
T ss_pred HHHHHHHHHHhC-----CCeEEEecCccHHH---HHHHHHHHHHhCCCEEEEECC-CChhhhhcCceeeeecCCCChHHH
Confidence 335666666542 24566666888776 344688888999996555432 11111110 0 00 0001122
Q ss_pred HHHHhhcCceEEEecCCCHHH----HHHHHHHHHhhCCCcEEEEee
Q psy786 133 RKRLDAFGFNAVVVDGHDVEH----LVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 133 ~~~a~a~G~~~~~vdG~d~~~----l~~al~~a~~~~~~P~lI~~~ 174 (176)
.++++.+--...+|. ++++ +.+|++.|+. .++|+.|++-
T Consensus 138 ~~~~~~itk~s~~v~--~~~~~~~~l~~A~~~A~~-~~gPV~l~iP 180 (578)
T PLN02573 138 LRCFQTVTCYQAVIN--NLEDAHELIDTAISTALK-ESKPVYISVS 180 (578)
T ss_pred HHHhhceEEEEEEeC--CHHHHHHHHHHHHHHHHh-cCCCEEEEee
Confidence 356666544455664 5554 5555555543 4689999873
No 240
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=87.24 E-value=8.7 Score=29.22 Aligned_cols=72 Identities=11% Similarity=0.078 Sum_probs=47.7
Q ss_pred cceEEEEECCCccCCc-hHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHH
Q psy786 76 SYRTYCLVGDGESAEG-SIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHL 154 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G-~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l 154 (176)
.++++++++||+-... ...+....++..++.+.++-+.+ ...-+.++++.-|..++.+. |.+++
T Consensus 107 ~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~-------------~~~~L~~ia~~tgG~~~~~~--~~~~l 171 (183)
T cd01453 107 SREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSA-------------EMHICKEICKATNGTYKVIL--DETHL 171 (183)
T ss_pred ceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEech-------------HHHHHHHHHHHhCCeeEeeC--CHHHH
Confidence 4568888889876432 23344556666777643333321 01347889999999999985 78899
Q ss_pred HHHHHHHH
Q psy786 155 VKVSSFKL 162 (176)
Q Consensus 155 ~~al~~a~ 162 (176)
.+.+.++.
T Consensus 172 ~~~~~~~~ 179 (183)
T cd01453 172 KELLLEHV 179 (183)
T ss_pred HHHHHhcC
Confidence 98887753
No 241
>KOG4166|consensus
Probab=86.83 E-value=1.9 Score=37.74 Aligned_cols=100 Identities=17% Similarity=0.049 Sum_probs=61.3
Q ss_pred HHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhc-
Q psy786 61 VAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAF- 139 (176)
Q Consensus 61 ~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~- 139 (176)
+|-|.|.+.+. ...|++..|-|+.+- ..-+.-|-.-+.|.++|- .+..-+.-..+.+...|+..+-++.
T Consensus 144 aAegYaR~sgK----PGvvlvTSGPGATNv---vtp~ADAlaDg~PlVvft---GQVptsaIGtDAFQEadiVgisRScT 213 (675)
T KOG4166|consen 144 AAEGYARSSGK----PGVVLVTSGPGATNV---VTPLADALADGVPLVVFT---GQVPTSAIGTDAFQEADIVGISRSCT 213 (675)
T ss_pred hhhhhhhhcCC----CcEEEEecCCCcccc---cchhhHHhhcCCcEEEEe---cccchhhcccchhccCCeeeeeeccc
Confidence 46677776642 468999999999972 234777777789954431 2211111111222234555556666
Q ss_pred CceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786 140 GFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR 173 (176)
Q Consensus 140 G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~ 173 (176)
-|++..- |+++|.+.+++|++- ..||+|++.
T Consensus 214 KwNvmVk---dVedlPrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 214 KWNVMVK---DVEDLPRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred eeheeee---cHHHhhHHHHHHhhhhccCCCCCeEeeC
Confidence 4665542 789999999998763 258999985
No 242
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=85.64 E-value=8.9 Score=35.15 Aligned_cols=78 Identities=15% Similarity=0.205 Sum_probs=51.2
Q ss_pred hHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEE
Q psy786 92 SIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVW 170 (176)
Q Consensus 92 ~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~l 170 (176)
...-++.+++-.++| +++|+.-.+++.......-.+.+.++ ..|+. ++.+++= -|..|...+.+.|+++.++|+.
T Consensus 440 Y~r~AiRlaALm~l~-~~~V~THDSIgvGEDGPTHqPiEqLa-~LRaiPN~~V~RP--aD~~Et~~aw~~Al~~~~gPt~ 515 (663)
T COG0021 440 YARPAVRLAALMGLP-VIYVFTHDSIGVGEDGPTHQPVEQLA-SLRAIPNLSVIRP--ADANETAAAWKYALERKDGPTA 515 (663)
T ss_pred hhhHHHHHHHhcCCC-eEEEEecCceecCCCCCCCCcHHHHH-HhhccCCceeEec--CChHHHHHHHHHHHhcCCCCeE
Confidence 345578899999999 66677666665532222222333333 34444 7777753 2678999999999987789987
Q ss_pred EEe
Q psy786 171 IQR 173 (176)
Q Consensus 171 I~~ 173 (176)
|-.
T Consensus 516 Lil 518 (663)
T COG0021 516 LIL 518 (663)
T ss_pred EEE
Confidence 643
No 243
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=85.40 E-value=9.6 Score=34.38 Aligned_cols=102 Identities=16% Similarity=0.004 Sum_probs=55.1
Q ss_pred HHHHHHHHHhchhcCCCcceEEE--EECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYC--LVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~--~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a 136 (176)
.-+|-|.+.... ++.+| ..|-|.++ ..-++..|...+.|+|++--+ -....... ..+...|...++
T Consensus 54 ~~mAdgyar~tg------k~~v~~v~~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~-~~~~~~~~--~~~Qe~d~~~l~ 121 (578)
T PRK06546 54 AFAAAAEAQLTG------KLAVCAGSCGPGNLH---LINGLYDAHRSGAPVLAIASH-IPSAQIGS--GFFQETHPDRLF 121 (578)
T ss_pred HHHHHhHHHhhC------CceEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCC-CCccccCC--CCccccChhhhc
Confidence 345667776543 34444 45777776 334688999999995554321 11111110 111112334566
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEee
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQRG 174 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~ 174 (176)
+.+=-..++|+ +++++.+.+++|++ ...||+.|++-
T Consensus 122 ~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~lP 160 (578)
T PRK06546 122 VECSGYCEMVS--SAEQAPRVLHSAIQHAVAGGGVSVVTLP 160 (578)
T ss_pred ccceeeEeEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 65533344664 66666665655553 23589999863
No 244
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=84.33 E-value=4.2 Score=41.38 Aligned_cols=105 Identities=16% Similarity=0.007 Sum_probs=58.6
Q ss_pred HHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhc
Q psy786 60 SVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAF 139 (176)
Q Consensus 60 ~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~ 139 (176)
-+|.|.|.+... -..++|..|-|..+ ..-++..|..-+.|+|++.-+ .......... ....|-..+++.+
T Consensus 353 fmAdGyAR~Tgk----pgV~i~TsGPG~tN---~l~av~eA~~d~vPlLvItgd-~p~~~~~~ga--~Q~iDq~~lf~pv 422 (1655)
T PLN02980 353 FHALGYARGSLK----PAVVITSSGTAVSN---LLPAVVEASQDFVPLLLLTAD-RPPELQDAGA--NQAINQVNHFGSF 422 (1655)
T ss_pred HHHHHHHHHhCC----CEEEEEeCcHHHHH---HHHHHHHHhhcCCCEEEEeCC-CCHHHhcCCC--CcccchhhHHHhh
Confidence 367788876531 23455556777776 455789999999996555433 2222111111 1123445566666
Q ss_pred CceEEEec-CCC-------HHHHHHHHHHHHhhCCCcEEEEee
Q psy786 140 GFNAVVVD-GHD-------VEHLVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 140 G~~~~~vd-G~d-------~~~l~~al~~a~~~~~~P~lI~~~ 174 (176)
--..++|. -.+ ++.+.+|++.|....+||+.|++-
T Consensus 423 tK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 423 VRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred hheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 54455552 223 144566666664333589999863
No 245
>PRK13685 hypothetical protein; Provisional
Probab=83.24 E-value=25 Score=29.24 Aligned_cols=83 Identities=14% Similarity=0.029 Sum_probs=50.7
Q ss_pred ceEEEEECCCccCCch-------HHHHHHHhhhcCCCcEEEEEecCCCccccCccc---ccccHHHHHHHhhcCceEEEe
Q psy786 77 YRTYCLVGDGESAEGS-------IWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---QHQTEVYRKRLDAFGFNAVVV 146 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~-------~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---~~~~~~~~~~a~a~G~~~~~v 146 (176)
..+|+++-||.-..|. ..++...+...++++-++-+-+..-++....+. ........++|+.-|..++.+
T Consensus 194 ~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~~ 273 (326)
T PRK13685 194 PARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYTA 273 (326)
T ss_pred CCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEEc
Confidence 4578899999876442 235566777888885444443211111111111 122346788999999999998
Q ss_pred cCCCHHHHHHHHHHH
Q psy786 147 DGHDVEHLVKVSSFK 161 (176)
Q Consensus 147 dG~d~~~l~~al~~a 161 (176)
+ |.+++.+++++.
T Consensus 274 ~--~~~~L~~if~~I 286 (326)
T PRK13685 274 A--SLEELRAVYATL 286 (326)
T ss_pred C--CHHHHHHHHHHH
Confidence 5 777887777665
No 246
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=82.20 E-value=22 Score=27.69 Aligned_cols=98 Identities=15% Similarity=-0.012 Sum_probs=60.9
Q ss_pred CcccchhHHHHHHHHHhchh-cCCCcceEEEEECCCccC-CchHHH--HHHHhhhcCCCcEEEEEecCCCccccCccccc
Q psy786 52 TGSLGQGLSVAAGMAYVGKY-FDKASYRTYCLVGDGESA-EGSIWE--ALHFASYYKLDNLCVIFDINRLGQSEPTSLQH 127 (176)
Q Consensus 52 ~g~~G~~l~~AvG~A~a~~~-~~~~~~~vv~~~GDG~~~-~G~~~e--al~~a~~~~lp~liiV~~nn~~~~~~~~~~~~ 127 (176)
.|..|.+..-|+|.|+-.=. ....+.+|+.++-||... .+.... +-.+|+..++++ +.|.--. .
T Consensus 86 ~g~ag~~TadAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~i-ytIgiG~------~----- 153 (191)
T cd01455 86 FCWSGDHTVEATEFAIKELAAKEDFDEAIVIVLSDANLERYGIQPKKLADALAREPNVNA-FVIFIGS------L----- 153 (191)
T ss_pred cCccCccHHHHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEE-EEEEecC------C-----
Confidence 34445666677777763311 122346788899999964 332333 246677888874 3332211 0
Q ss_pred ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh
Q psy786 128 QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 128 ~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~ 163 (176)
.......+++.-|.+++++. |.++|.+.+++.+.
T Consensus 154 d~~~l~~iA~~tgG~~F~A~--d~~~L~~iy~~I~~ 187 (191)
T cd01455 154 SDEADQLQRELPAGKAFVCM--DTSELPHIMQQIFT 187 (191)
T ss_pred CHHHHHHHHhCCCCcEEEeC--CHHHHHHHHHHHHH
Confidence 12345677888899999995 77899988887763
No 247
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=79.93 E-value=25 Score=32.10 Aligned_cols=104 Identities=16% Similarity=0.074 Sum_probs=62.2
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCC-CccccCcccccccHHHHH
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINR-LGQSEPTSLQHQTEVYRK 134 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~-~~~~~~~~~~~~~~~~~~ 134 (176)
.+++-.|.|+|.. .-++|+++- ..|.+=..=+-+--.+.++|| ++|++|-.+ .+.++++... ..|++-
T Consensus 368 QHAVT~AAGlA~~------G~kPvvaIY--STFLQRAYDQliHDvaiqnLP-V~faIDRAGivG~DG~TH~G--~fDls~ 436 (627)
T COG1154 368 QHAVTFAAGLAAE------GMKPVVAIY--STFLQRAYDQLIHDVAIQNLP-VTFAIDRAGIVGADGPTHQG--LFDLSF 436 (627)
T ss_pred HHHHHHHHHHHhC------CCCCEEEEe--cHHHHHHHHHHHHHHHhccCC-eEEEEecCcccCCCCCcccc--HHHHHH
Confidence 3444444455443 246888886 445432233445566778999 566677444 4555554332 245553
Q ss_pred HHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 135 RLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 135 ~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
+.---|+....- .|.+|++..+..|+...++|+.|.
T Consensus 437 l~~iPnmvi~aP--~de~el~~ml~ta~~~~~gP~AiR 472 (627)
T COG1154 437 LRCIPNMVIMAP--RDEEELRQMLYTALAQDDGPVAIR 472 (627)
T ss_pred HhcCCCcEEecC--CCHHHHHHHHHHHHhcCCCCeEEE
Confidence 333335655433 489999999999987666898764
No 248
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=79.38 E-value=7.7 Score=34.76 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=29.9
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEE
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCV 110 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~lii 110 (176)
.-+|-|.+.+... -..+++..|-|.++ ..-++..|...+.|+|++
T Consensus 60 ~~aAdgyar~tg~----~~v~~vt~GpG~~N---~l~~i~~A~~~~~Pvl~I 104 (568)
T PRK07449 60 GFLALGLAKASKR----PVAVIVTSGTAVAN---LYPAVIEAGLTGVPLIVL 104 (568)
T ss_pred HHHHHHHHHhhCC----CEEEEECCccHHHh---hhHHHHHHhhcCCcEEEE
Confidence 4467787776531 23455555887776 345799999999996555
No 249
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=79.29 E-value=6.9 Score=29.58 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=37.7
Q ss_pred cHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 129 TEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 129 ~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.+..+--|++||.+++-++|.+-+.+.+.++.-+++-.||..|+-.+
T Consensus 20 TTHV~LtARAfGA~gil~~~e~De~v~esv~dVv~rwGG~F~v~~~~ 66 (179)
T COG1303 20 TTHVALTARAFGADGILLDGEEDEKVVESVEDVVERWGGPFFVKFGV 66 (179)
T ss_pred hhhhhhhhHhhCCceEEEcCcccHHHHHHHHHHHHhcCCCEEEEEcc
Confidence 45667789999999999988766788888888887778998877543
No 250
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=79.21 E-value=23 Score=26.13 Aligned_cols=71 Identities=17% Similarity=0.116 Sum_probs=39.3
Q ss_pred cceEEEEECCCccCCchH--HHHHHHhhhcCCCcEEEEEecCCCccccCcc-cccccHHHHHHHhhcCceEEEec
Q psy786 76 SYRTYCLVGDGESAEGSI--WEALHFASYYKLDNLCVIFDINRLGQSEPTS-LQHQTEVYRKRLDAFGFNAVVVD 147 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~--~eal~~a~~~~lp~liiV~~nn~~~~~~~~~-~~~~~~~~~~~a~a~G~~~~~vd 147 (176)
.+.+|+++.||.-..|.. .+....+.+.++++..|-+-+.. ....+.. .......+..+++.-|..++.+.
T Consensus 102 ~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~ig~~~-~~~~~~~~~~~~~~~l~~la~~tgG~~~~~~ 175 (180)
T cd01467 102 KERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVGKSG-SGPKPDGSTILDEDSLVEIADKTGGRIFRAL 175 (180)
T ss_pred CCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecCCC-CCcCCCCcccCCHHHHHHHHHhcCCEEEEec
Confidence 357899999997765532 23344555667775445444322 1111100 01122346778888888888874
No 251
>PRK13683 hypothetical protein; Provisional
Probab=79.19 E-value=2.9 Score=28.15 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 148 GHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 148 G~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
-.|.++++.-+++|+ ++..|.+||.+|
T Consensus 22 ~edA~alYq~I~~am-~sg~P~llELtC 48 (87)
T PRK13683 22 AEDAEALYQQIRQAM-RSGNPRLLELTC 48 (87)
T ss_pred HHHHHHHHHHHHHHH-hcCCCcEEEEEe
Confidence 347889999999998 568899999998
No 252
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=79.03 E-value=9.8 Score=28.38 Aligned_cols=141 Identities=19% Similarity=0.240 Sum_probs=73.7
Q ss_pred hHHHHHHHHcCC-----CCHHHHhhh-hhcCCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEE
Q psy786 10 TNRSKAWAEAGL-----FPVSELKNL-RKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLV 83 (176)
Q Consensus 10 ~~~ya~l~~~G~-----~~~e~l~~~-r~~~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~ 83 (176)
-..|..+-..|. +|=+.|.+. +.. ..+ |.++.+..+--- -++++..|+.+|-+ ++.+.+.
T Consensus 8 eav~e~mkdagIdfa~slPC~~lk~ll~lv----eed--p~i~~i~vtREE--eg~GIcAGa~lAGk------k~ailmQ 73 (172)
T COG4032 8 EAVYEAMKDAGIDFACSLPCDNLKNLLPLV----EED--PEIPEIPVTREE--EGVGICAGAYLAGK------KPAILMQ 73 (172)
T ss_pred HHHHHHHHHcCCcEEEeccHHHHHhHHHHH----hcC--CCcccccccchh--cceeeehhhhhcCC------CcEEEEe
Confidence 346777777773 455555443 222 222 223334332222 23446788888865 3555554
Q ss_pred CCCccCCchHHHHHH-HhhhcCCCcEEEEEecCCC-ccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHH
Q psy786 84 GDGESAEGSIWEALH-FASYYKLDNLCVIFDINRL-GQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFK 161 (176)
Q Consensus 84 GDG~~~~G~~~eal~-~a~~~~lp~liiV~~nn~~-~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a 161 (176)
--|=-+ +..+|. +-..+++|.+.+ +.-.++ ...-+.+...+ .-..++.+..+++.+++. .++|-.+.++.+
T Consensus 74 nsGlGN---siNal~SL~~ty~iPl~ml-~ShRG~~~E~i~AQVpmG-r~~~kiLe~~~lpt~t~~--~p~Ea~~li~~~ 146 (172)
T COG4032 74 NSGLGN---SINALASLYVTYKIPLLML-ASHRGVLKEGIEAQVPMG-RALPKILEGLELPTYTII--GPEEALPLIENA 146 (172)
T ss_pred ccCcch---HHHHHHHHHHHhccchhhh-hhccchhhcCCccccccc-hhhHHHHhhcCCcccccC--CHHHHHHHHHHH
Confidence 333222 223343 334789995544 443443 22222222222 235678899999999886 677755555555
Q ss_pred Hh---hCCCcEEE
Q psy786 162 LQ---KAIGCVWI 171 (176)
Q Consensus 162 ~~---~~~~P~lI 171 (176)
.. +..+|+.+
T Consensus 147 ~~~a~~~s~pv~v 159 (172)
T COG4032 147 ILDAFENSRPVAV 159 (172)
T ss_pred HHHHHHcCCceEE
Confidence 43 34566543
No 253
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=76.93 E-value=5.9 Score=36.00 Aligned_cols=52 Identities=35% Similarity=0.313 Sum_probs=36.7
Q ss_pred HHHHHHhhhc--CCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHH
Q psy786 94 WEALHFASYY--KLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLV 155 (176)
Q Consensus 94 ~eal~~a~~~--~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~ 155 (176)
..+|.-+.|| |+| |+++++|.+-..+. + -.+.++.||++.+.||++.|.+..
T Consensus 405 ~~aLED~~RhGqKlP-L~VlvDnGsTeEDi--------p-A~~~~k~Ygi~ivVVDHH~Pde~v 458 (715)
T COG1107 405 NFALEDAHRHGQKLP-LLVLVDNGSTEEDI--------P-AIKQLKAYGIDIVVVDHHYPDEAV 458 (715)
T ss_pred HHHHHHHHhcCCccc-eEEEEcCCCccccc--------H-HHHHHHhcCCCEEEEcCCCCcchh
Confidence 4467778886 599 66777765533221 2 245789999999999999887655
No 254
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=76.09 E-value=41 Score=28.70 Aligned_cols=103 Identities=18% Similarity=0.207 Sum_probs=58.2
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~ 135 (176)
..+++.++|++++-. +..-...|.|-.. .+|.+..|+-..+|+++++.+ ........ .......|+...
T Consensus 57 ~~a~s~v~GA~~aGa------r~~TaTSg~Gl~L---m~E~l~~a~~~~~P~Vi~~~~-R~~ps~g~-p~~~dq~D~~~~ 125 (365)
T COG0674 57 IGAISAVIGASYAGA------RAFTATSGQGLLL---MAEALGLAAGTETPLVIVVAQ-RPLPSTGL-PIKGDQSDLMAA 125 (365)
T ss_pred HHHHHHHHHHHhhCc------ceEeecCCccHHH---HHHHHHHHHhccCCeEEEEec-cCcCCCcc-cccccHHHHHHH
Confidence 556888999998753 3445555666665 578899999999995444443 44332221 111112344433
Q ss_pred HhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEE
Q psy786 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQ 172 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~ 172 (176)
-.+ ||.-+... |++|...-.-+|+. +..-|+++-
T Consensus 126 r~~-g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~ 162 (365)
T COG0674 126 RDT-GFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVL 162 (365)
T ss_pred Hcc-CceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEe
Confidence 233 88777654 55554443334432 246787653
No 255
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=74.44 E-value=50 Score=31.91 Aligned_cols=106 Identities=11% Similarity=0.068 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCch---HHHHHHH-hhhc--CCCcEEEEEecCCCccccCcccccccH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGS---IWEALHF-ASYY--KLDNLCVIFDINRLGQSEPTSLQHQTE 130 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~---~~eal~~-a~~~--~lp~liiV~~nn~~~~~~~~~~~~~~~ 130 (176)
.-++.++|+|+..+ ...+|+=+==|.|..|. +-+-++. +++| ..+ +++.+- .+|...++.+.....+
T Consensus 658 a~~G~~~G~a~~g~-----~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sg-lv~~~p-~G~~g~g~~hsS~~~E 730 (929)
T TIGR00239 658 SVLGFEYGYATTSP-----RTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSG-LVMLLP-HGYEGQGPEHSSGRLE 730 (929)
T ss_pred HHHHHHHhHHhcCC-----CCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccC-eEEEec-CcCCCCCchhhccCHH
Confidence 34667899998764 33434333333343221 2232444 3444 345 444333 4455443333333334
Q ss_pred HHHHHHhhcCceEEEecCCCHHHHHHHHH-HHHhhCCCcEEE
Q psy786 131 VYRKRLDAFGFNAVVVDGHDVEHLVKVSS-FKLQKAIGCVWI 171 (176)
Q Consensus 131 ~~~~~a~a~G~~~~~vdG~d~~~l~~al~-~a~~~~~~P~lI 171 (176)
.+-+++.--|++++... ++.+....|+ +|+...+.|+++
T Consensus 731 ~~lql~~~~gl~Vv~ps--tpad~~~lLrrqa~r~~~~Pvi~ 770 (929)
T TIGR00239 731 RFLQLAAEQNMQVCVPT--TPAQVFHILRRQALRGMRRPLVV 770 (929)
T ss_pred HHHHHhCCCCCEEEecC--CHHHHHHHHHHHHHhCCCCCEEE
Confidence 45555555688888764 8999999999 577434899875
No 256
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=72.49 E-value=7.3 Score=29.20 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=41.6
Q ss_pred eEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEec---CCCHHHH
Q psy786 78 RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVD---GHDVEHL 154 (176)
Q Consensus 78 ~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vd---G~d~~~l 154 (176)
.++.++-|+.-.+ ...+-+......++| +++++| .+-... ... -..|..++.+.+|++++.+. +...+++
T Consensus 80 D~ii~VvDa~~l~-r~l~l~~ql~e~g~P-~vvvlN--~~D~a~--~~g-~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L 152 (156)
T PF02421_consen 80 DLIIVVVDATNLE-RNLYLTLQLLELGIP-VVVVLN--KMDEAE--RKG-IEIDAEKLSERLGVPVIPVSARTGEGIDEL 152 (156)
T ss_dssp SEEEEEEEGGGHH-HHHHHHHHHHHTTSS-EEEEEE--THHHHH--HTT-EEE-HHHHHHHHTS-EEEEBTTTTBTHHHH
T ss_pred CEEEEECCCCCHH-HHHHHHHHHHHcCCC-EEEEEe--CHHHHH--HcC-CEECHHHHHHHhCCCEEEEEeCCCcCHHHH
Confidence 4777777887654 333333444568999 555565 211111 111 12467888899999999875 4455666
Q ss_pred HHH
Q psy786 155 VKV 157 (176)
Q Consensus 155 ~~a 157 (176)
.++
T Consensus 153 ~~~ 155 (156)
T PF02421_consen 153 KDA 155 (156)
T ss_dssp HHH
T ss_pred Hhh
Confidence 554
No 257
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=71.53 E-value=39 Score=25.14 Aligned_cols=73 Identities=11% Similarity=0.097 Sum_probs=43.2
Q ss_pred ceEEEEECCCccCCchH------HHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCC
Q psy786 77 YRTYCLVGDGESAEGSI------WEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHD 150 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~------~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d 150 (176)
+++++++.||.-..|.. .+....+..+++++ +++.-..... ...-..++|+.-|.+++.++.-+
T Consensus 99 ~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v--~~I~~~~~~~--------~~~~l~~iA~~tgG~~~~~~d~~ 168 (178)
T cd01451 99 RPLIVVITDGRANVGPDPTADRALAAARKLRARGISA--LVIDTEGRPV--------RRGLAKDLARALGGQYVRLPDLS 168 (178)
T ss_pred ceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcE--EEEeCCCCcc--------CccHHHHHHHHcCCeEEEcCcCC
Confidence 57999999998765431 22233445566663 3333221110 12346788999999999996555
Q ss_pred HHHHHHHHH
Q psy786 151 VEHLVKVSS 159 (176)
Q Consensus 151 ~~~l~~al~ 159 (176)
..++..+++
T Consensus 169 ~~~~~~~~~ 177 (178)
T cd01451 169 ADAIASAVR 177 (178)
T ss_pred HHHHHHHhh
Confidence 566665543
No 258
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=71.28 E-value=54 Score=29.93 Aligned_cols=95 Identities=21% Similarity=0.192 Sum_probs=56.9
Q ss_pred chhHHHHHHHHHhchhc----CCCcceEEEEECCCccCCch---------HHHHHHHhh---hcCCCcEEEEEecCCCcc
Q psy786 56 GQGLSVAAGMAYVGKYF----DKASYRTYCLVGDGESAEGS---------IWEALHFAS---YYKLDNLCVIFDINRLGQ 119 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~----~~~~~~vv~~~GDG~~~~G~---------~~eal~~a~---~~~lp~liiV~~nn~~~~ 119 (176)
|.+.|.+-|+..|.+.+ ....+++++++-||..+.+. ..+++..|. ..+++ +++++-...
T Consensus 473 gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~--~~vId~g~~-- 548 (584)
T PRK13406 473 GGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLP--ALVIDTSPR-- 548 (584)
T ss_pred CCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCe--EEEEecCCC--
Confidence 45566666665554321 12236789999999987542 133333333 34455 444443221
Q ss_pred ccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHH
Q psy786 120 SEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKL 162 (176)
Q Consensus 120 ~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~ 162 (176)
......++|+..|.+++...--+.+.+.++++.++
T Consensus 549 --------~~~~~~~LA~~~gg~y~~l~~~~a~~~~~~v~~~~ 583 (584)
T PRK13406 549 --------PQPQARALAEAMGARYLPLPRADAGRLSQAVRAAT 583 (584)
T ss_pred --------CcHHHHHHHHhcCCeEEECCCCCHHHHHHHHHhhc
Confidence 11245789999999999986567888888777653
No 259
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=71.09 E-value=19 Score=31.00 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=36.9
Q ss_pred cceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEec-----CCC
Q psy786 76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVD-----GHD 150 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vd-----G~d 150 (176)
+..++.+.|-|++.+ -.++......+- -++|+.|..|+- .++++++.+|.++..++ .-|
T Consensus 55 ~~~~~ll~gsGt~am---EAav~sl~~pgd--kVLv~~nG~FG~-----------R~~~ia~~~g~~v~~~~~~wg~~v~ 118 (383)
T COG0075 55 NGDVVLLSGSGTLAM---EAAVASLVEPGD--KVLVVVNGKFGE-----------RFAEIAERYGAEVVVLEVEWGEAVD 118 (383)
T ss_pred CCcEEEEcCCcHHHH---HHHHHhccCCCC--eEEEEeCChHHH-----------HHHHHHHHhCCceEEEeCCCCCCCC
Confidence 346777777777642 112222222222 344555555432 46677777777766553 236
Q ss_pred HHHHHHHHH
Q psy786 151 VEHLVKVSS 159 (176)
Q Consensus 151 ~~~l~~al~ 159 (176)
++++.++|+
T Consensus 119 p~~v~~~L~ 127 (383)
T COG0075 119 PEEVEEALD 127 (383)
T ss_pred HHHHHHHHh
Confidence 677766665
No 260
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=68.71 E-value=49 Score=26.27 Aligned_cols=93 Identities=23% Similarity=0.257 Sum_probs=49.0
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~ 135 (176)
|..++..+|+|.|.++ .+.++||+.=|-.-+. ...++|..+.....+ =||+-+ ...+ +
T Consensus 52 g~~~~ttiaLaaAAr~---TgGR~vCIvp~~~~~~-~~~~~l~~~~~~~~v--Efvvg~-------------~~e~---~ 109 (218)
T PF07279_consen 52 GGAISTTIALAAAARQ---TGGRHVCIVPDEQSLS-EYKKALGEAGLSDVV--EFVVGE-------------APEE---V 109 (218)
T ss_pred CCchHhHHHHHHHHHh---cCCeEEEEcCChhhHH-HHHHHHhhccccccc--eEEecC-------------CHHH---H
Confidence 5567778888888774 3568999987755432 234444433333322 122210 0112 2
Q ss_pred Hhhc-CceEEEecCCCHHHHH-HHHHHHHhhCCCcEEE
Q psy786 136 LDAF-GFNAVVVDGHDVEHLV-KVSSFKLQKAIGCVWI 171 (176)
Q Consensus 136 a~a~-G~~~~~vdG~d~~~l~-~al~~a~~~~~~P~lI 171 (176)
...| |++...||.+ .++.. +.|+.+--..+|-+++
T Consensus 110 ~~~~~~iDF~vVDc~-~~d~~~~vl~~~~~~~~GaVVV 146 (218)
T PF07279_consen 110 MPGLKGIDFVVVDCK-REDFAARVLRAAKLSPRGAVVV 146 (218)
T ss_pred HhhccCCCEEEEeCC-chhHHHHHHHHhccCCCceEEE
Confidence 2223 7777788764 45555 7776653223454443
No 261
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=68.57 E-value=21 Score=28.49 Aligned_cols=57 Identities=11% Similarity=0.166 Sum_probs=38.2
Q ss_pred cEEEEEecCCCccccCcc-cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh
Q psy786 107 NLCVIFDINRLGQSEPTS-LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 107 ~liiV~~nn~~~~~~~~~-~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~ 163 (176)
-+.+|++|..|.-..... .......+++.++.+|+++....--+.+++.+++++..+
T Consensus 9 g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~ 66 (241)
T smart00115 9 GLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAE 66 (241)
T ss_pred cEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHh
Confidence 377888888885211111 011124677788888999987754678999999988754
No 262
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=68.34 E-value=57 Score=25.68 Aligned_cols=78 Identities=17% Similarity=0.089 Sum_probs=43.0
Q ss_pred CcceEEEEECCCccCCch-HH-HHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh-----cCceEEEec
Q psy786 75 ASYRTYCLVGDGESAEGS-IW-EALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA-----FGFNAVVVD 147 (176)
Q Consensus 75 ~~~~vv~~~GDG~~~~G~-~~-eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a-----~G~~~~~vd 147 (176)
..++||-+.|||--+.|. -. .+-..+...+ ++| |++.|........ .++....+. -|.-++.+.
T Consensus 115 ~~RrVIDvSGDG~~N~G~~p~~~ard~~~~~G---itI----NgL~I~~~~~~~~--~~L~~yy~~~VIgGpgAFV~~a~ 185 (205)
T PF06707_consen 115 CWRRVIDVSGDGPNNQGPRPVTSARDAAVAAG---ITI----NGLAILDDDPFGG--ADLDAYYRRCVIGGPGAFVETAR 185 (205)
T ss_pred CceEEEEECCCCCCCCCCCccHHHHHHHHHCC---eEE----eeeEecCCCCCcc--ccHHHHHhhhcccCCCceEEEcC
Confidence 468999999999999883 22 1222222222 222 5555543322111 133333333 344444554
Q ss_pred CCCHHHHHHHHHHHHh
Q psy786 148 GHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 148 G~d~~~l~~al~~a~~ 163 (176)
+.+++.+|+++.+.
T Consensus 186 --~~~df~~AirrKL~ 199 (205)
T PF06707_consen 186 --GFEDFAEAIRRKLI 199 (205)
T ss_pred --CHHHHHHHHHHHHH
Confidence 78899999988764
No 263
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=67.15 E-value=18 Score=29.51 Aligned_cols=45 Identities=11% Similarity=-0.051 Sum_probs=36.5
Q ss_pred HHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 130 EVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.-+..+++.+|++.......++++..+.+++.+ ....|++|.+.+
T Consensus 53 ~~~~~~~~~lG~~~~~~~~~~~~~~~~~l~~~l-~~g~pv~~~~D~ 97 (317)
T PF14399_consen 53 DFEENLLERLGIKYEWREFSSPDEAWEELKEAL-DAGRPVIVWVDM 97 (317)
T ss_pred HHHHHHHHHCCceEEEEecCCHHHHHHHHHHHH-hCCCceEEEecc
Confidence 446678889999988666679999999999998 467899988654
No 264
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=65.60 E-value=47 Score=26.02 Aligned_cols=69 Identities=23% Similarity=0.184 Sum_probs=39.5
Q ss_pred ceEEEEECCCccCCchHHHHHHHhhhcC-CC--cEEEEEec-CCCccccCcccccccHHHHHHHhhcCceEEEecC---C
Q psy786 77 YRTYCLVGDGESAEGSIWEALHFASYYK-LD--NLCVIFDI-NRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDG---H 149 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~~eal~~a~~~~-lp--~liiV~~n-n~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG---~ 149 (176)
+.+|.+.|-||-. |++.-|.+-+ +| +..++.|+ +.|+ -++|+.+|++...++- .
T Consensus 2 ki~VlaSG~GSNl-----qaiida~~~~~~~a~i~~Visd~~~A~~--------------lerA~~~gIpt~~~~~k~~~ 62 (200)
T COG0299 2 KIAVLASGNGSNL-----QAIIDAIKGGKLDAEIVAVISDKADAYA--------------LERAAKAGIPTVVLDRKEFP 62 (200)
T ss_pred eEEEEEeCCcccH-----HHHHHHHhcCCCCcEEEEEEeCCCCCHH--------------HHHHHHcCCCEEEeccccCC
Confidence 3577777777754 4555555422 32 33344443 2222 3467888888776642 2
Q ss_pred CHHHHHHHHHHHHhh
Q psy786 150 DVEHLVKVSSFKLQK 164 (176)
Q Consensus 150 d~~~l~~al~~a~~~ 164 (176)
+.+++.+++.++++.
T Consensus 63 ~r~~~d~~l~~~l~~ 77 (200)
T COG0299 63 SREAFDRALVEALDE 77 (200)
T ss_pred CHHHHHHHHHHHHHh
Confidence 356677777777743
No 265
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=63.46 E-value=24 Score=28.01 Aligned_cols=57 Identities=12% Similarity=0.204 Sum_probs=38.3
Q ss_pred cEEEEEecCCCcc-ccCc-ccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh
Q psy786 107 NLCVIFDINRLGQ-SEPT-SLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 107 ~liiV~~nn~~~~-~~~~-~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~ 163 (176)
-+.+|++|..|.- .... ........+++.++.+|+++....--+.+++.+++++..+
T Consensus 10 g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~nlt~~~~~~~l~~f~~ 68 (243)
T cd00032 10 GLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVEVKNNLTAEEILEELKEFAS 68 (243)
T ss_pred CEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHh
Confidence 3678888888753 1111 1111124677888889999987754678999999988753
No 266
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=61.52 E-value=43 Score=27.81 Aligned_cols=69 Identities=23% Similarity=0.457 Sum_probs=36.1
Q ss_pred HHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEE
Q psy786 65 MAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAV 144 (176)
Q Consensus 65 ~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~ 144 (176)
.+++.+++..++..++.++|-|.... +....++..+.+. -+.|++-+. .....+.+.++.+|++..
T Consensus 116 sala~~~La~~~~~~l~viGaG~QA~---~~~~a~~~~~~i~-~v~v~~r~~----------~~~~~~~~~~~~~~~~v~ 181 (313)
T PF02423_consen 116 SALAARYLARPDARTLGVIGAGVQAR---WHLRALAAVRPIK-EVRVYSRSP----------ERAEAFAARLRDLGVPVV 181 (313)
T ss_dssp HHHHHHHHS-TT--EEEEE--SHHHH---HHHHHHHHHS--S-EEEEE-SSH----------HHHHHHHHHHHCCCTCEE
T ss_pred HHHHHHHhCcCCCceEEEECCCHHHH---HHHHHHHHhCCce-EEEEEccCh----------hHHHHHHHhhccccccce
Confidence 34555666666778999999998763 3333444555555 455555111 112355555555888888
Q ss_pred Eec
Q psy786 145 VVD 147 (176)
Q Consensus 145 ~vd 147 (176)
.++
T Consensus 182 ~~~ 184 (313)
T PF02423_consen 182 AVD 184 (313)
T ss_dssp EES
T ss_pred ecc
Confidence 886
No 267
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.28 E-value=54 Score=23.75 Aligned_cols=73 Identities=18% Similarity=0.065 Sum_probs=41.8
Q ss_pred HHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEE--EecCCCH-HHHHHHHHHHHhhCCCcEEEE
Q psy786 96 ALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAV--VVDGHDV-EHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 96 al~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~--~vdG~d~-~~l~~al~~a~~~~~~P~lI~ 172 (176)
.+...+.++.. -|++|.--+... .+-....+.+.++..|+.+. .|-+.++ ++-.+++++|++...+|+|-.
T Consensus 20 D~~~iaa~GFk---siI~nRPDgEe~---~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~eaegPVlay 93 (130)
T COG3453 20 DIASIAALGFK---SIICNRPDGEEP---GQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDEAEGPVLAY 93 (130)
T ss_pred HHHHHHHhccc---eecccCCCCCCC---CCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHHHhCCCEEee
Confidence 35555555543 344544433332 22233566778888888765 4444222 334456778887788999876
Q ss_pred ee
Q psy786 173 RG 174 (176)
Q Consensus 173 ~~ 174 (176)
-|
T Consensus 94 Cr 95 (130)
T COG3453 94 CR 95 (130)
T ss_pred ec
Confidence 43
No 268
>KOG1201|consensus
Probab=59.29 E-value=1.1e+02 Score=25.67 Aligned_cols=80 Identities=30% Similarity=0.329 Sum_probs=49.7
Q ss_pred cceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcC-ceEEEecCCCHHHH
Q psy786 76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFG-FNAVVVDGHDVEHL 154 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G-~~~~~vdG~d~~~l 154 (176)
.+.++.++|-|+-. | -.-++.+|.+.. .++++|=|.-+. .+..+..+..| .+++.||-.|.+|+
T Consensus 37 ~g~~vLITGgg~Gl-G-r~ialefa~rg~---~~vl~Din~~~~----------~etv~~~~~~g~~~~y~cdis~~eei 101 (300)
T KOG1201|consen 37 SGEIVLITGGGSGL-G-RLIALEFAKRGA---KLVLWDINKQGN----------EETVKEIRKIGEAKAYTCDISDREEI 101 (300)
T ss_pred cCCEEEEeCCCchH-H-HHHHHHHHHhCC---eEEEEeccccch----------HHHHHHHHhcCceeEEEecCCCHHHH
Confidence 46799999988754 2 233577776654 455566554332 23333444335 77889998899999
Q ss_pred HHHHHHHHhhCCCcEEE
Q psy786 155 VKVSSFKLQKAIGCVWI 171 (176)
Q Consensus 155 ~~al~~a~~~~~~P~lI 171 (176)
++..++-. +.-||+-|
T Consensus 102 ~~~a~~Vk-~e~G~V~I 117 (300)
T KOG1201|consen 102 YRLAKKVK-KEVGDVDI 117 (300)
T ss_pred HHHHHHHH-HhcCCceE
Confidence 98776653 44455444
No 269
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=59.23 E-value=1.4e+02 Score=28.88 Aligned_cols=102 Identities=8% Similarity=0.011 Sum_probs=55.3
Q ss_pred hHHHHHHHHHhchhcCCCcceEE--EEECCCccC-CchHHHHHHHh-hhcC--CCcEEEEEecCCCccccCcccccccHH
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTY--CLVGDGESA-EGSIWEALHFA-SYYK--LDNLCVIFDINRLGQSEPTSLQHQTEV 131 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv--~~~GDG~~~-~G~~~eal~~a-~~~~--lp~liiV~~nn~~~~~~~~~~~~~~~~ 131 (176)
-++.++|+|+... ...+| .-+||=... +-.+-+-++.+ .+|+ .+ +++.+- .+|...++.+... .
T Consensus 657 ~~G~~~G~a~~g~-----~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~sg-lv~~~p-~G~~g~g~~hsS~---~ 726 (924)
T PRK09404 657 VLGFEYGYSTAEP-----NTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSG-LVMLLP-HGYEGQGPEHSSA---R 726 (924)
T ss_pred HHHHHHHHHhcCC-----CCceEEEEeccccccchHHHHHHHHHHHHHHhcCccC-eEEEec-CcCCCCChhhhcc---C
Confidence 3667889988754 22234 445554431 01133345554 4443 45 444333 3444333222222 2
Q ss_pred HHHHHhh---cCceEEEecCCCHHHHHHHHHHHHhhC-CCcEEE
Q psy786 132 YRKRLDA---FGFNAVVVDGHDVEHLVKVSSFKLQKA-IGCVWI 171 (176)
Q Consensus 132 ~~~~a~a---~G~~~~~vdG~d~~~l~~al~~a~~~~-~~P~lI 171 (176)
++.++.. -|++++... ++.+....|++++.+. ++|+++
T Consensus 727 ~E~~l~~~~~~gl~Vv~ps--tpad~~~lLr~q~~r~~r~Pvv~ 768 (924)
T PRK09404 727 LERFLQLCAEDNMQVCNPT--TPAQYFHLLRRQALRPFRKPLVV 768 (924)
T ss_pred HHHHHHhCCCCCCEEEecC--CHHHHHHHHHHHHhhCCCCCEEE
Confidence 3344433 388888764 8999999999865344 589875
No 270
>PRK06852 aldolase; Validated
Probab=54.20 E-value=44 Score=27.92 Aligned_cols=69 Identities=14% Similarity=-0.036 Sum_probs=37.2
Q ss_pred HHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecC------CCHHHHHHHHHHHHhhC-CCcEE
Q psy786 98 HFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDG------HDVEHLVKVSSFKLQKA-IGCVW 170 (176)
Q Consensus 98 ~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG------~d~~~l~~al~~a~~~~-~~P~l 170 (176)
.-|.+|++|++.+++-- +-.+..... .......++++.-+|.+.++++= .|++.+.++++ .. +.|+|
T Consensus 161 ~ea~~~GlPll~~~ypr-G~~i~~~~~-~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~----~~g~vpVv 234 (304)
T PRK06852 161 YEAHKHGLIAVLWIYPR-GKAVKDEKD-PHLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVL----AAGRTKVV 234 (304)
T ss_pred HHHHHhCCcEEEEeecc-CcccCCCcc-HHHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHH----hCCCCcEE
Confidence 44568999976666542 222221111 01112445677778988888851 24555555443 33 56777
Q ss_pred EE
Q psy786 171 IQ 172 (176)
Q Consensus 171 I~ 172 (176)
|-
T Consensus 235 ia 236 (304)
T PRK06852 235 CA 236 (304)
T ss_pred Ee
Confidence 63
No 271
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=53.93 E-value=1.7e+02 Score=29.25 Aligned_cols=100 Identities=9% Similarity=-0.001 Sum_probs=52.6
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
++++++|++.+- .++...+.-.++. .+.|.|..++-..+|+++.| -+..+.... ........|+ ..++
T Consensus 63 A~~av~GA~~aG-------ara~T~TSs~GL~--LM~e~l~~~ag~~~P~Vi~v-a~R~~~~~~-~~i~~dh~Dv-~~~R 130 (1165)
T TIGR02176 63 AAGAVHGALQTG-------ALTTTFTASQGLL--LMIPNMYKIAGELLPCVFHV-SARAIAAHA-LSIFGDHQDV-MAAR 130 (1165)
T ss_pred HHHHHHhHhhcC-------CCEEEecChhHHH--HHHHHHHHHHhccCCEEEEE-ecCCCCCCC-CccCCCchHH-HHhh
Confidence 456677866642 3455555544444 35777866665689954444 333332211 1111112344 3457
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEE
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWI 171 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI 171 (176)
.-||-.+.. .+++|..+-.-.|.. +.+.|+++
T Consensus 131 ~~G~ivl~s--~svQEa~D~al~A~~lAe~~~~Pvi~ 165 (1165)
T TIGR02176 131 QTGFAMLAS--SSVQEVMDLALVAHLATIEARVPFMH 165 (1165)
T ss_pred cCCeEEEeC--CCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 778855544 377776655444432 35678764
No 272
>PRK10490 sensor protein KdpD; Provisional
Probab=53.80 E-value=65 Score=30.85 Aligned_cols=76 Identities=12% Similarity=0.050 Sum_probs=44.8
Q ss_pred cceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHH
Q psy786 76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEH 153 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~ 153 (176)
++..||+.|+-... -..-.+...|.+.+.+..++-++............. .-.+..++|+.+|.++..+.|.|+.+
T Consensus 251 eriLV~v~~~~~~~-~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~-~l~~~~~lA~~lGa~~~~~~~~dva~ 326 (895)
T PRK10490 251 DAILLCIGHNTGSE-KLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRR-AILSALRLAQELGAETATLSDPAEEK 326 (895)
T ss_pred CeEEEEECCCcchH-HHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHH-HHHHHHHHHHHcCCEEEEEeCCCHHH
Confidence 45667776664433 245556678888898966665654432211111111 11233469999999988888877653
No 273
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=53.17 E-value=72 Score=27.22 Aligned_cols=87 Identities=13% Similarity=0.068 Sum_probs=47.9
Q ss_pred cceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEe-----cCCC
Q psy786 76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVV-----DGHD 150 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v-----dG~d 150 (176)
+..++.++|+|.|.- +..+-+-+.|++.+--.++.+..........-...++++.++...+.+-+ -|+.
T Consensus 178 ~~d~~l~vg~G~FH~------lg~~i~~~~~v~~~dP~s~~~~~~~~~~~~~l~~R~~~i~~a~~a~~~giiv~tk~gQ~ 251 (347)
T COG1736 178 DADAVLYVGSGRFHP------LGLAIRTEKPVFAIDPYSGKVREEDPEADRFLRKRYAAISKALDAKSFGIIVSTKGGQR 251 (347)
T ss_pred ccceEEEEcCCccCh------hhcccccCCcEEEEcCCCCceeecchhhhHHHHHHHHHHHHHhcCCeEEEEEecccccC
Confidence 357999999999862 22333356775555444444443332222222356778888876655422 2555
Q ss_pred HHHHHHHHHHHHhhCCCc
Q psy786 151 VEHLVKVSSFKLQKAIGC 168 (176)
Q Consensus 151 ~~~l~~al~~a~~~~~~P 168 (176)
-.++.+-+.+.+....++
T Consensus 252 r~~~~~~l~k~~~~~g~~ 269 (347)
T COG1736 252 RLEVARELVKLLKEAGKE 269 (347)
T ss_pred cHHHHHHHHHHHHHcCCc
Confidence 555555555555444443
No 274
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=52.77 E-value=78 Score=22.21 Aligned_cols=81 Identities=11% Similarity=-0.112 Sum_probs=41.6
Q ss_pred CCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCc
Q psy786 89 AEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGC 168 (176)
Q Consensus 89 ~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P 168 (176)
.+|...||+..|++..-.++|.+..++.-.........+..+++.+.... .+=...+|.++.+.. .+...+....=|
T Consensus 2 f~gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~-~fv~w~~dv~~~eg~--~la~~l~~~~~P 78 (116)
T cd02991 2 YQGTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT-RMLFWACSVAKPEGY--RVSQALRERTYP 78 (116)
T ss_pred CcCcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc-CEEEEEEecCChHHH--HHHHHhCCCCCC
Confidence 35667789999987665555556555432222222334455666666653 232224454455532 233444333457
Q ss_pred EEEE
Q psy786 169 VWIQ 172 (176)
Q Consensus 169 ~lI~ 172 (176)
.++-
T Consensus 79 ~~~~ 82 (116)
T cd02991 79 FLAM 82 (116)
T ss_pred EEEE
Confidence 6543
No 275
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=52.00 E-value=92 Score=25.97 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=26.3
Q ss_pred HHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEe
Q psy786 65 MAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFD 113 (176)
Q Consensus 65 ~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~ 113 (176)
.+++.+++..++.+++.++|-|..... ..+++.. ..++. -+.|++
T Consensus 116 salaa~~La~~~~~~lgiiG~G~qA~~-~l~al~~--~~~~~-~v~V~~ 160 (325)
T TIGR02371 116 GGVAAKYLARKDSSVLGIIGAGRQAWT-QLEALSR--VFDLE-EVSVYC 160 (325)
T ss_pred HHHHHHHhCCCCCCEEEEECCCHHHHH-HHHHHHh--cCCCC-EEEEEC
Confidence 344445555567789999999987642 2344432 33444 445554
No 276
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=51.80 E-value=6.9 Score=33.90 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=16.9
Q ss_pred cccCCcccchhHHHHHHHHH
Q psy786 48 IDVGTGSLGQGLSVAAGMAY 67 (176)
Q Consensus 48 ~~~~~g~~G~~l~~AvG~A~ 67 (176)
...+.|+||+++|.|+|+++
T Consensus 412 ~~~g~g~mG~glp~aiGa~~ 431 (432)
T TIGR00173 412 ANRGASGIDGTLSTALGIAL 431 (432)
T ss_pred ecCchhhHHHHHHHHHHhhc
Confidence 34467999999999999986
No 277
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=50.80 E-value=1.3e+02 Score=24.34 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=24.6
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEE
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVW 170 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~l 170 (176)
+..+++++-|| .|..+++-.+.|+..++.-++
T Consensus 110 ~~~~fDyIi~D--sPAGIE~G~~~A~~~Ad~AiV 141 (272)
T COG2894 110 KAMDFDYIIID--SPAGIEQGFKNAVYFADEAIV 141 (272)
T ss_pred HhcCCCEEEec--CcchHHHHHHhhhhccceEEE
Confidence 34789999998 899999999998865555443
No 278
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=49.77 E-value=1.5e+02 Score=24.51 Aligned_cols=55 Identities=7% Similarity=-0.080 Sum_probs=33.3
Q ss_pred CCcceEEEEECCCccCCchHHHHHHHhhhcC-CCc-EEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEec
Q psy786 74 KASYRTYCLVGDGESAEGSIWEALHFASYYK-LDN-LCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVD 147 (176)
Q Consensus 74 ~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~-lp~-liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vd 147 (176)
.+.+.+|.+.|.|+-. ++|-.+.+.+ +|. +++|+-|+. +..++|+.+|++++.++
T Consensus 92 ~~~kiavl~Sg~g~nl-----~al~~~~~~~~l~~~i~~visn~~--------------~~~~~A~~~gIp~~~~~ 148 (289)
T PRK13010 92 QRPKVVIMVSKFDHCL-----NDLLYRWRMGELDMDIVGIISNHP--------------DLQPLAVQHDIPFHHLP 148 (289)
T ss_pred CCeEEEEEEeCCCccH-----HHHHHHHHCCCCCcEEEEEEECCh--------------hHHHHHHHcCCCEEEeC
Confidence 3446677777776654 4566655433 442 333444332 34578999999998764
No 279
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=49.71 E-value=75 Score=26.26 Aligned_cols=43 Identities=16% Similarity=-0.052 Sum_probs=29.3
Q ss_pred cceEEEEECCCccCCchH--------HHHHHHhhhcCCCcEEEEEecCCCcc
Q psy786 76 SYRTYCLVGDGESAEGSI--------WEALHFASYYKLDNLCVIFDINRLGQ 119 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~--------~eal~~a~~~~lp~liiV~~nn~~~~ 119 (176)
+++|+++.-|..+..|.. ..++..|.+.++| +|++++..+..+
T Consensus 119 G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~~lP-lV~l~dSgGaRm 169 (285)
T TIGR00515 119 GMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALEDNCP-LIIFSASGGARM 169 (285)
T ss_pred CEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHcCCC-EEEEEcCCCccc
Confidence 467888888866665543 2345677788999 666778777654
No 280
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=49.53 E-value=1.6e+02 Score=25.66 Aligned_cols=85 Identities=11% Similarity=0.075 Sum_probs=43.0
Q ss_pred ceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEec------CCCcc--ccCcccccccHHHHHHHhhcCceEEEe--
Q psy786 77 YRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDI------NRLGQ--SEPTSLQHQTEVYRKRLDAFGFNAVVV-- 146 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~n------n~~~~--~~~~~~~~~~~~~~~~a~a~G~~~~~v-- 146 (176)
..|++++|..+... .......+..+++|.+-.--.+ ..|.. .+...+.....-+.++.+.|||+.+.+
T Consensus 104 ~~V~aVIG~~~S~~--s~ava~~~~~~~IP~Is~~sts~~Ls~~~~~~~ffRt~psd~~qa~ai~~ll~~~~W~~Vaii~ 181 (458)
T cd06375 104 LAIAGVIGGSYSSV--SIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVA 181 (458)
T ss_pred CCeEEEEcCCCchH--HHHHHHHhhhccccceeeccCChhhcccccCCCeEEecCCcHHHHHHHHHHHHHCCCeEEEEEE
Confidence 46999999988863 3344556778899954331111 11111 000001011123456677788887743
Q ss_pred cCCC-HHHHHHHHHHHHh
Q psy786 147 DGHD-VEHLVKVSSFKLQ 163 (176)
Q Consensus 147 dG~d-~~~l~~al~~a~~ 163 (176)
+.++ -....++++++++
T Consensus 182 ~~~~yG~~~~~~~~~~~~ 199 (458)
T cd06375 182 SEGDYGETGIEAFEQEAR 199 (458)
T ss_pred eCchHHHHHHHHHHHHHH
Confidence 2122 2345555555543
No 281
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=49.10 E-value=71 Score=24.04 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=32.5
Q ss_pred HHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786 130 EVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI 171 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI 171 (176)
+.+.++.+.+|++.+.++|...+++...+.+.......+++|
T Consensus 89 ~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~I 130 (169)
T PF02739_consen 89 PYIKELLEALGIPVLEVPGYEADDVIATLAKKASEEGFEVII 130 (169)
T ss_dssp HHHHHHHHHTTSEEEEETTB-HHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHCCCCEecCCCCcHHHHHHHHHhhhccCCCEEEE
Confidence 456678889999999999999999999998876555556554
No 282
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=48.14 E-value=1.1e+02 Score=29.35 Aligned_cols=75 Identities=19% Similarity=0.183 Sum_probs=46.4
Q ss_pred cceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHH
Q psy786 76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVE 152 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~ 152 (176)
++..+|+.|+..... ..-.+-.+|.+.+.|-.++-+++-....... .....-...-++|+.+|.+..++.|.|..
T Consensus 249 e~ilvcI~~~~~~e~-liR~a~RlA~~~~a~~~av~v~~~~~~~~~~-~~~~~l~~~~~Lae~lGae~~~l~~~dv~ 323 (890)
T COG2205 249 ERILVCISGSPGSEK-LIRRAARLASRLHAKWTAVYVETPELHRLSE-KEARRLHENLRLAEELGAEIVTLYGGDVA 323 (890)
T ss_pred ceEEEEECCCCchHH-HHHHHHHHHHHhCCCeEEEEEeccccccccH-HHHHHHHHHHHHHHHhCCeEEEEeCCcHH
Confidence 678888888766543 4566777888889885444445433322111 11111123457899999999999776653
No 283
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=47.66 E-value=1.2e+02 Score=25.80 Aligned_cols=59 Identities=7% Similarity=-0.037 Sum_probs=30.4
Q ss_pred HHhhhcCCCcEEEEEecCCCccccCcccccc---cHHHHHHHhhcCceEEEec-CCCHHHHHHH
Q psy786 98 HFASYYKLDNLCVIFDINRLGQSEPTSLQHQ---TEVYRKRLDAFGFNAVVVD-GHDVEHLVKV 157 (176)
Q Consensus 98 ~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~---~~~~~~~a~a~G~~~~~vd-G~d~~~l~~a 157 (176)
.-|.+|++|++.+++- .+-.+......... ....+.++.-+|.+.+++. -.|.+++.++
T Consensus 186 ~ea~~~GlPlv~~~Yp-RG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v 248 (348)
T PRK09250 186 EEAHELGLATVLWSYL-RNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAI 248 (348)
T ss_pred HHHHHhCCCEEEEecc-cCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHh
Confidence 4566899997666554 22233322110100 1123455666788888874 2244555554
No 284
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=47.63 E-value=72 Score=21.37 Aligned_cols=32 Identities=13% Similarity=0.117 Sum_probs=26.4
Q ss_pred HHHHHHHhhcCceEEEecCCCHHHHHHHHHHH
Q psy786 130 EVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFK 161 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a 161 (176)
....+.++.+|.+.+.+++....++.++++++
T Consensus 65 ~~vk~~akk~~ip~~~~~~~~~~~l~~~l~~~ 96 (97)
T PF10087_consen 65 WKVKKAAKKYGIPIIYSRSRGVSSLERALERL 96 (97)
T ss_pred HHHHHHHHHcCCcEEEECCCCHHHHHHHHHhh
Confidence 45678889999999999878888888888764
No 285
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=46.97 E-value=1.6e+02 Score=24.10 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=55.9
Q ss_pred cchhHHHHHHHHHhchhc------CCCcceEEEEECCCccCC----chHHHHHHHhhhcC-CCcEEEEEecCCCccccCc
Q psy786 55 LGQGLSVAAGMAYVGKYF------DKASYRTYCLVGDGESAE----GSIWEALHFASYYK-LDNLCVIFDINRLGQSEPT 123 (176)
Q Consensus 55 ~G~~l~~AvG~A~a~~~~------~~~~~~vv~~~GDG~~~~----G~~~eal~~a~~~~-lp~liiV~~nn~~~~~~~~ 123 (176)
.|...|.+-|+..+...+ +...+++++++-||=.+. +.-.|++..|.... .++.++|+|-..-..
T Consensus 150 ~GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~~~~---- 225 (261)
T COG1240 150 TGGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEGSEV---- 225 (261)
T ss_pred CCCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCCccc----
Confidence 355566666655553321 223567899999998652 22355565555432 333344455332111
Q ss_pred ccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHH
Q psy786 124 SLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSF 160 (176)
Q Consensus 124 ~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~ 160 (176)
...-..++|+.+|.+++..+....+.+..+.+.
T Consensus 226 ----~~g~~~~iA~~~Gg~~~~L~~l~~~~i~~~~r~ 258 (261)
T COG1240 226 ----RLGLAEEIARASGGEYYHLDDLSDDSIVSAVRQ 258 (261)
T ss_pred ----cccHHHHHHHHhCCeEEecccccchHHHHHHHh
Confidence 112346789999999999975555666666654
No 286
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=46.95 E-value=1.8e+02 Score=24.77 Aligned_cols=87 Identities=14% Similarity=0.076 Sum_probs=44.4
Q ss_pred ceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEE-----Eec-CCCcc--ccCcccccccHHHHHHHhhcCceEEEe--
Q psy786 77 YRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVI-----FDI-NRLGQ--SEPTSLQHQTEVYRKRLDAFGFNAVVV-- 146 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV-----~~n-n~~~~--~~~~~~~~~~~~~~~~a~a~G~~~~~v-- 146 (176)
..|++++|..+... .......+..+++|.+..- +.| ..|.. .+...+.....-+.++.+.|||+.+-+
T Consensus 102 ~~V~aVIG~~~S~~--s~ava~v~~~~~IP~IS~~ats~~Ls~~~~~~~ffRt~p~D~~qa~ai~~li~~~~w~~Vaii~ 179 (403)
T cd06361 102 PRIKAVIGAGYSEI--SMAVSRMLNLQLIPQVSYASTAEILSDKIRFPSFLRTVPSDFYQTKAMAHLIKKSGWNWVGIII 179 (403)
T ss_pred CCeEEEECCCcchH--HHHHHHHhccCCcceEecCcCCcccCCcccCCCeeECCCchHhHHHHHHHHHHHcCCcEEEEEE
Confidence 46999999998764 3333445667788854321 111 11110 000001111233566677789987743
Q ss_pred -cCCCHHHHHHHHHHHHhhC
Q psy786 147 -DGHDVEHLVKVSSFKLQKA 165 (176)
Q Consensus 147 -dG~d~~~l~~al~~a~~~~ 165 (176)
|+.--+...+++++++++.
T Consensus 180 ~~d~yG~~~~~~f~~~~~~~ 199 (403)
T cd06361 180 TDDDYGRSALETFIIQAEAN 199 (403)
T ss_pred ecCchHHHHHHHHHHHHHHC
Confidence 2222345666666666443
No 287
>KOG1184|consensus
Probab=46.69 E-value=59 Score=29.27 Aligned_cols=105 Identities=16% Similarity=0.065 Sum_probs=56.7
Q ss_pred HHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc--ccccccHH---HHHHH
Q psy786 62 AAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT--SLQHQTEV---YRKRL 136 (176)
Q Consensus 62 AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~--~~~~~~~~---~~~~a 136 (176)
|=|.|..+- =.-.|...|=|++. ....+.-+-..++|++.||--=|.-...++. .......| +.+++
T Consensus 58 ADGYAR~~G-----i~a~VtTfgVGeLS---AlNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~ 129 (561)
T KOG1184|consen 58 ADGYARSKG-----IGACVTTFGVGELS---ALNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMF 129 (561)
T ss_pred hcchhhhcC-----ceEEEEEeccchhh---hhcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHH
Confidence 445555433 13567777888875 3334556667899976665322221111110 11122233 34444
Q ss_pred hhcCceEEEe-cCCC-HHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 137 DAFGFNAVVV-DGHD-VEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 137 ~a~G~~~~~v-dG~d-~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
+-.-....-+ |+.| ++++.++++.++ ...+|+-|.+-|
T Consensus 130 k~vsc~~a~I~~~e~A~~~ID~aI~~~~-~~~rPVYi~iP~ 169 (561)
T KOG1184|consen 130 KKVTCYTAMINDIEDAPEQIDKAIRTAL-KESKPVYIGVPA 169 (561)
T ss_pred HhhhhHHhhhcCHhhhHHHHHHHHHHHH-HhcCCeEEEeec
Confidence 4433333334 3333 577888999887 467999888743
No 288
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=46.46 E-value=1.3e+02 Score=22.82 Aligned_cols=85 Identities=13% Similarity=-0.014 Sum_probs=45.4
Q ss_pred eEEEEECCCccCCchHHHHHHHhhhc-CCCcEEEEEecCCCccccCcccccccHHHHHHHhhc-CceEEEecCCCHHHHH
Q psy786 78 RTYCLVGDGESAEGSIWEALHFASYY-KLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAF-GFNAVVVDGHDVEHLV 155 (176)
Q Consensus 78 ~vv~~~GDG~~~~G~~~eal~~a~~~-~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~-G~~~~~vdG~d~~~l~ 155 (176)
++|.+++|..++- ..+.+.....+. .+.+-+-++....|+- .+..+.+..++. ..+.+.+.---.++..
T Consensus 2 r~V~vtld~~~~~-al~~aa~~l~~~~~p~l~l~~~~~~el~~--------~~~~~~~~~~aia~ADii~~smlF~ed~v 72 (164)
T PF11965_consen 2 RFVIVTLDEHYNS-ALYRAAARLNRDHCPGLELSVFAAAELER--------DPEALEECEAAIARADIIFGSMLFIEDHV 72 (164)
T ss_pred EEEEEeCchhhhH-HHHHHHHHHhhccCCCeEEEEEeHHHhhc--------ChHHHHHHHHHHHhCCEEEeehhhhHHHH
Confidence 5889999999985 344444444444 3333344554443332 233444444444 4555544211245666
Q ss_pred HHHHHHHhhC--CCcEEE
Q psy786 156 KVSSFKLQKA--IGCVWI 171 (176)
Q Consensus 156 ~al~~a~~~~--~~P~lI 171 (176)
+++..+++.. +.|++|
T Consensus 73 ~~l~~~L~~~r~~~~a~i 90 (164)
T PF11965_consen 73 RPLLPALEARRDHCPAMI 90 (164)
T ss_pred HHHHHHHHHHHccCCEEE
Confidence 6777777533 567655
No 289
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=46.05 E-value=1.6e+02 Score=23.79 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=42.7
Q ss_pred CcceEEEEECCCccCCc--hHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----cccccHHHHHHHhhcCceEEEecC
Q psy786 75 ASYRTYCLVGDGESAEG--SIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----LQHQTEVYRKRLDAFGFNAVVVDG 148 (176)
Q Consensus 75 ~~~~vv~~~GDG~~~~G--~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----~~~~~~~~~~~a~a~G~~~~~vdG 148 (176)
+.+++++++.||.-..+ ...+.+..+.+.+++ ++.+.-.+........ .......+.++|+.=|.+++.++.
T Consensus 163 p~rk~iIllTDG~~~~~~~~~~~~~~~~~~~~v~--vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~~~~ 240 (296)
T TIGR03436 163 PGRKALIVISDGGDNRSRDTLERAIDAAQRADVA--IYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFYVNS 240 (296)
T ss_pred CCCeEEEEEecCCCcchHHHHHHHHHHHHHcCCE--EEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCeEecccC
Confidence 35788999999976432 123444455566665 3333222110000000 001235678899999998876643
Q ss_pred CCHHHHHHHHHHH
Q psy786 149 HDVEHLVKVSSFK 161 (176)
Q Consensus 149 ~d~~~l~~al~~a 161 (176)
.+ +.++++++
T Consensus 241 ~~---l~~~f~~i 250 (296)
T TIGR03436 241 ND---LDGAFAQI 250 (296)
T ss_pred cc---HHHHHHHH
Confidence 44 44444444
No 290
>PF05209 MinC_N: Septum formation inhibitor MinC, N-terminal domain; InterPro: IPR007874 In Escherichia coli FtsZ (P0A9A6 from SWISSPROT) assembles into a Z ring at midcell. Its assembly at polar sites is prevented by the min system. MinC P18196 from SWISSPROT, a component of this system, is an inhibitor of FtsZ assembly that is positioned within the cell by interaction with the MinDE proteins. MinC is an oligomer, probably a dimer []. The C-terminal half of MinC is the most conserved and interacts with MinD. The N-terminal half is thought to interact with FtsZ. MinC rapidly oscillates between the poles of the cell to destabilise FtsZ filaments that have formed before they mature into polar Z rings; GO: 0051302 regulation of cell division; PDB: 3GHF_A 1HF2_C.
Probab=46.00 E-value=62 Score=21.93 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=26.2
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHhh-----CCCcEEEEee
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQK-----AIGCVWIQRG 174 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~~-----~~~P~lI~~~ 174 (176)
.++.-.+.++..|++++.+++.+-+++ .+.|++|++.
T Consensus 12 ~~~l~vl~l~~~d~~~l~~~L~~ki~~ap~FF~~~pvvldl~ 53 (99)
T PF05209_consen 12 NFTLLVLRLRSADLDELLQALDEKIAQAPDFFKNAPVVLDLS 53 (99)
T ss_dssp TTEEEEEEECSS-HHHHHHHHHHHHHHTHHHCTTTEEEEEEE
T ss_pred ceeEEEEEeCCCCHHHHHHHHHHHHHhChHhHcCCCeEEehh
Confidence 456667777667888888888877654 3579888864
No 291
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=45.81 E-value=1.1e+02 Score=21.94 Aligned_cols=70 Identities=14% Similarity=0.027 Sum_probs=39.5
Q ss_pred cceEEEEECCCccCCch-HHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHH
Q psy786 76 SYRTYCLVGDGESAEGS-IWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHL 154 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~-~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l 154 (176)
..+.+.++.||...... ..+.+..+.+.+.++..+.+-.. .....+.++++.=|..++.++ +.+++
T Consensus 99 ~~~~iillTDG~~~~~~~~~~~~~~~~~~~i~i~~i~~g~~-----------~~~~~l~~ia~~~gG~~~~~~--~~~~~ 165 (171)
T cd01461 99 SVPQIILLTDGEVTNESQILKNVREALSGRIRLFTFGIGSD-----------VNTYLLERLAREGRGIARRIY--ETDDI 165 (171)
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHhcCCCceEEEEEeCCc-----------cCHHHHHHHHHcCCCeEEEec--ChHHH
Confidence 45799999999864321 12333333334566433333210 112346677888888888885 67676
Q ss_pred HHHH
Q psy786 155 VKVS 158 (176)
Q Consensus 155 ~~al 158 (176)
.+-+
T Consensus 166 ~~~~ 169 (171)
T cd01461 166 ESQL 169 (171)
T ss_pred HHHh
Confidence 6543
No 292
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=45.69 E-value=95 Score=21.14 Aligned_cols=26 Identities=23% Similarity=0.004 Sum_probs=16.3
Q ss_pred chHHHHHHHhhhcCCCcEEEEEecCC
Q psy786 91 GSIWEALHFASYYKLDNLCVIFDINR 116 (176)
Q Consensus 91 G~~~eal~~a~~~~lp~liiV~~nn~ 116 (176)
|.+.|++..|...+-++++.+..++.
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c 29 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDE 29 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCc
Confidence 45667777777777675555555443
No 293
>PRK07589 ornithine cyclodeaminase; Validated
Probab=44.58 E-value=1.6e+02 Score=24.95 Aligned_cols=26 Identities=35% Similarity=0.652 Sum_probs=18.8
Q ss_pred HHHhchhcCCCcceEEEEECCCccCC
Q psy786 65 MAYVGKYFDKASYRTYCLVGDGESAE 90 (176)
Q Consensus 65 ~A~a~~~~~~~~~~vv~~~GDG~~~~ 90 (176)
.+++.+++..++..+++++|=|....
T Consensus 117 sala~~~Lar~da~~l~iiGaG~QA~ 142 (346)
T PRK07589 117 SALAAKYLARPDSRTMALIGNGAQSE 142 (346)
T ss_pred HHHHHHHhccCCCcEEEEECCcHHHH
Confidence 34555556666788999999998763
No 294
>PLN02522 ATP citrate (pro-S)-lyase
Probab=44.44 E-value=1.5e+02 Score=27.40 Aligned_cols=84 Identities=17% Similarity=0.132 Sum_probs=48.5
Q ss_pred CCcceEEEEECC-CccCCchHHHHHHHhhhcCCCcEEEEEecCCCcc-------ccCccccc-c----cHHHHHHHhhcC
Q psy786 74 KASYRTYCLVGD-GESAEGSIWEALHFASYYKLDNLCVIFDINRLGQ-------SEPTSLQH-Q----TEVYRKRLDAFG 140 (176)
Q Consensus 74 ~~~~~vv~~~GD-G~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~-------~~~~~~~~-~----~~~~~~~a~a~G 140 (176)
+++-++|++.|+ |.-.+-.+.|++.-+. .+-|++.++. +.... ..++.... . ...+...++..|
T Consensus 220 Dp~Tk~IvlygEiGg~~e~~f~ea~~~a~-~~KPVVa~ka--Grsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aG 296 (608)
T PLN02522 220 IPQIKMIVVLGELGGRDEYSLVEALKQGK-VSKPVVAWVS--GTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAG 296 (608)
T ss_pred CCCCCEEEEEEecCchhHHHHHHHHHHhc-CCCCEEEEec--cCCCccCccccccccccccccCCCccHHHHHHHHHHCC
Confidence 456679999999 7776544555444333 5678655543 22210 01111111 1 134666777778
Q ss_pred ceEEEecCCCHHHHHHHHHHHHhh
Q psy786 141 FNAVVVDGHDVEHLVKVSSFKLQK 164 (176)
Q Consensus 141 ~~~~~vdG~d~~~l~~al~~a~~~ 164 (176)
+. .++ +++|+.++++++++.
T Consensus 297 v~--vv~--s~~El~~~~~~~~~~ 316 (608)
T PLN02522 297 AI--VPT--SFEALEAAIKETFEK 316 (608)
T ss_pred Ce--EeC--CHHHHHHHHHHHHHH
Confidence 75 444 899999999988763
No 295
>PRK09482 flap endonuclease-like protein; Provisional
Probab=44.35 E-value=1.7e+02 Score=23.73 Aligned_cols=42 Identities=19% Similarity=0.326 Sum_probs=31.6
Q ss_pred HHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786 130 EVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI 171 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI 171 (176)
+-+.++.+++|++.+..+|...+++...+.........+++|
T Consensus 87 ~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~I 128 (256)
T PRK09482 87 PAIRAAFEELGIDSWHADGNEADDLIATLAVKVAQAGHQATI 128 (256)
T ss_pred HHHHHHHHhCCCCEeccCCcCHHHHHHHHHHHHHHCCCeEEE
Confidence 456788999999999999888889988887655444445544
No 296
>KOG3432|consensus
Probab=43.25 E-value=1.2e+02 Score=21.55 Aligned_cols=82 Identities=10% Similarity=0.197 Sum_probs=42.8
Q ss_pred cceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhc----CceEEEecCCCH
Q psy786 76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAF----GFNAVVVDGHDV 151 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~----G~~~~~vdG~d~ 151 (176)
.+..++++||=..-.|.....+.-....+-|+.++| +- .....++.+-++.| .+..+-++-+
T Consensus 6 ~~~liavIgDEDT~tGfLlaGvg~v~~~r~~Nf~vv-~~-----------~Tt~~eiedaF~~f~~RdDIaIiLInq~-- 71 (121)
T KOG3432|consen 6 KRTLIAVIGDEDTVTGFLLAGVGEVNENREPNFLVV-DS-----------KTTVEEIEDAFKSFTARDDIAIILINQF-- 71 (121)
T ss_pred cCcEEEEeccccceeeeeeecccccccCCCCCEEEE-ec-----------cCCHHHHHHHHHhhccccCeEEEEEhHH--
Confidence 467899999998877754333332233345554443 31 11123444444444 4556666422
Q ss_pred HHHHHHHHHHHh--hCCCcEEEEe
Q psy786 152 EHLVKVSSFKLQ--KAIGCVWIQR 173 (176)
Q Consensus 152 ~~l~~al~~a~~--~~~~P~lI~~ 173 (176)
+.+-++..++ ...-|.++|+
T Consensus 72 --~Ae~iR~~vD~h~~~vPAvLeI 93 (121)
T KOG3432|consen 72 --IAEMIRDRVDAHTQAVPAVLEI 93 (121)
T ss_pred --HHHHHHHHHHhccccCCeeEEe
Confidence 2233333433 2357888886
No 297
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=42.44 E-value=1.4e+02 Score=24.44 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=36.8
Q ss_pred CcceEEEEECCCccCCchHHHHHHHhhhcC-CCc-EEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCC--C
Q psy786 75 ASYRTYCLVGDGESAEGSIWEALHFASYYK-LDN-LCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGH--D 150 (176)
Q Consensus 75 ~~~~vv~~~GDG~~~~G~~~eal~~a~~~~-lp~-liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~--d 150 (176)
+.+.+|.+.|-|+-. +++-.+.+.+ +|. +..|+-|+ ++...+|+.+|++++.++-. +
T Consensus 84 ~~ki~vl~Sg~g~nl-----~~l~~~~~~g~l~~~i~~visn~--------------~~~~~~A~~~gIp~~~~~~~~~~ 144 (280)
T TIGR00655 84 LKRVAILVSKEDHCL-----GDLLWRWYSGELDAEIALVISNH--------------EDLRSLVERFGIPFHYIPATKDN 144 (280)
T ss_pred CcEEEEEEcCCChhH-----HHHHHHHHcCCCCcEEEEEEEcC--------------hhHHHHHHHhCCCEEEcCCCCcc
Confidence 446677777776654 4555554433 432 23333333 23455789999999877521 2
Q ss_pred HHHHHHHHHHHH
Q psy786 151 VEHLVKVSSFKL 162 (176)
Q Consensus 151 ~~~l~~al~~a~ 162 (176)
.++....+.+.+
T Consensus 145 ~~~~e~~~~~~l 156 (280)
T TIGR00655 145 RVEHEKRQLELL 156 (280)
T ss_pred hhhhHHHHHHHH
Confidence 233444444444
No 298
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=42.26 E-value=57 Score=27.19 Aligned_cols=43 Identities=16% Similarity=0.067 Sum_probs=29.8
Q ss_pred cceEEEEECCCccCCchH--------HHHHHHhhhcCCCcEEEEEecCCCcc
Q psy786 76 SYRTYCLVGDGESAEGSI--------WEALHFASYYKLDNLCVIFDINRLGQ 119 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~--------~eal~~a~~~~lp~liiV~~nn~~~~ 119 (176)
+++|+++.-|-+|+.|.. ..++..|.+.++| +|++.+..+-.+
T Consensus 132 Gr~v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~rlP-lV~l~~SGGARm 182 (296)
T CHL00174 132 GIPVALGVMDFQFMGGSMGSVVGEKITRLIEYATNESLP-LIIVCASGGARM 182 (296)
T ss_pred CEEEEEEEECCcccccCcCHHHHHHHHHHHHHHHHcCCC-EEEEECCCCccc
Confidence 467888888887776644 3345677788899 566677666554
No 299
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=41.50 E-value=1.3e+02 Score=21.56 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=37.1
Q ss_pred eEEEEECCCccCCch-HHHHHH----HhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHH
Q psy786 78 RTYCLVGDGESAEGS-IWEALH----FASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVE 152 (176)
Q Consensus 78 ~vv~~~GDG~~~~G~-~~eal~----~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~ 152 (176)
+.+.++.||.-..+. .++.+. .+...+++ ++++--. . .....-+.++|+.-+..++.++ |..
T Consensus 98 ~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~--i~~i~~g-----~----~~~~~~l~~ia~~~~g~~~~~~--~~~ 164 (170)
T cd01465 98 NRILLATDGDFNVGETDPDELARLVAQKRESGIT--LSTLGFG-----D----NYNEDLMEAIADAGNGNTAYID--NLA 164 (170)
T ss_pred eEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeE--EEEEEeC-----C----CcCHHHHHHHHhcCCceEEEeC--CHH
Confidence 567788999865432 123222 22234444 3322211 0 1112346778887788888886 888
Q ss_pred HHHHH
Q psy786 153 HLVKV 157 (176)
Q Consensus 153 ~l~~a 157 (176)
++.++
T Consensus 165 ~~~~~ 169 (170)
T cd01465 165 EARKV 169 (170)
T ss_pred HHHhh
Confidence 88764
No 300
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=41.31 E-value=2e+02 Score=23.61 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=31.0
Q ss_pred CcceEEEEECCCccCCchHHHHHHHhhhc-CCCc-EEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEec
Q psy786 75 ASYRTYCLVGDGESAEGSIWEALHFASYY-KLDN-LCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVD 147 (176)
Q Consensus 75 ~~~~vv~~~GDG~~~~G~~~eal~~a~~~-~lp~-liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vd 147 (176)
+.+.+|...|.|+- .|+|--+... +++. ++.|+-|+. +...+|+.+|++++.++
T Consensus 89 ~~ri~vl~Sg~gsn-----l~al~~~~~~~~~~~~i~~visn~~--------------~~~~lA~~~gIp~~~~~ 144 (286)
T PRK06027 89 RKRVVILVSKEDHC-----LGDLLWRWRSGELPVEIAAVISNHD--------------DLRSLVERFGIPFHHVP 144 (286)
T ss_pred CcEEEEEEcCCCCC-----HHHHHHHHHcCCCCcEEEEEEEcCh--------------hHHHHHHHhCCCEEEec
Confidence 44667777777554 4566655433 2332 333333332 44567899999998764
No 301
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=40.48 E-value=2.1e+02 Score=24.76 Aligned_cols=32 Identities=6% Similarity=0.160 Sum_probs=22.7
Q ss_pred ceEEEEECCCccCCchHHHHHHHhhhcCCCcEEE
Q psy786 77 YRTYCLVGDGESAEGSIWEALHFASYYKLDNLCV 110 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~lii 110 (176)
..|++++|..+... .......+..+++|.+..
T Consensus 102 ~~V~aviG~~~S~~--t~ava~i~~~~~iP~Is~ 133 (463)
T cd06376 102 EKVVGVIGASASSV--SIMVANILRLFQIPQISY 133 (463)
T ss_pred CCeEEEECCCCchH--HHHHHHHhccccCccccc
Confidence 46999999998863 344455677889996543
No 302
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=39.48 E-value=1.4e+02 Score=24.18 Aligned_cols=90 Identities=22% Similarity=0.208 Sum_probs=50.0
Q ss_pred cceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHH-HHHhhcCceEEEecCC-----
Q psy786 76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYR-KRLDAFGFNAVVVDGH----- 149 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~-~~a~a~G~~~~~vdG~----- 149 (176)
+.-+-..++|-++.++...|.+..-.+.+.. +-++.|-+.-... +.. ..+..+.. ..++.++.+++-|.|.
T Consensus 110 ~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~-v~ilaDV~~kh~~-~l~-~~~~~~~~~~a~~~~~aDaviVtG~~TG~~ 186 (254)
T PF03437_consen 110 NVFVGAYVTDEGIIEGCAGELLRYRKRLGAD-VKILADVHVKHSS-PLA-TRDLEEAAKDAVERGGADAVIVTGKATGEP 186 (254)
T ss_pred cCEEceecccCccccccHHHHHHHHHHcCCC-eEEEeeechhhcc-cCC-CCCHHHHHHHHHHhcCCCEEEECCcccCCC
Confidence 3457778899999888888877777777777 4455543321111 111 11122222 3335667888877664
Q ss_pred -CHHHHHHHHHHHHhhCCCcEEEE
Q psy786 150 -DVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 150 -d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
+++++.+ ++++ ...|+||=
T Consensus 187 ~~~~~l~~-vr~~---~~~PVlvG 206 (254)
T PF03437_consen 187 PDPEKLKR-VREA---VPVPVLVG 206 (254)
T ss_pred CCHHHHHH-HHhc---CCCCEEEe
Confidence 3444432 3333 23788763
No 303
>PLN02808 alpha-galactosidase
Probab=39.37 E-value=79 Score=27.36 Aligned_cols=43 Identities=12% Similarity=0.064 Sum_probs=32.9
Q ss_pred HHHHhhcCceEEEecCC-----CHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 133 RKRLDAFGFNAVVVDGH-----DVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 133 ~~~a~a~G~~~~~vdG~-----d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
++.+...|++++++|+. +..+-+.++++|+.+..+|++..++.
T Consensus 139 A~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpi~~slc~ 186 (386)
T PLN02808 139 AKTFASWGIDYLKYDNCENTGTSPQERYPKMSKALLNSGRPIFFSLCE 186 (386)
T ss_pred HHHHHHhCCCEEeecCcCCCCccHHHHHHHHHHHHHHhCCCeEEEecC
Confidence 34555789999999853 35677888999998888998887653
No 304
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=39.23 E-value=63 Score=26.81 Aligned_cols=14 Identities=14% Similarity=-0.007 Sum_probs=9.3
Q ss_pred CHHHHHHHHHHHHh
Q psy786 150 DVEHLVKVSSFKLQ 163 (176)
Q Consensus 150 d~~~l~~al~~a~~ 163 (176)
++.++++.|.+.++
T Consensus 265 ~~~e~r~~l~~~L~ 278 (292)
T PRK05654 265 HRRELRDTLASLLA 278 (292)
T ss_pred CHHHHHHHHHHHHH
Confidence 56677777766664
No 305
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=39.20 E-value=2.6e+02 Score=24.34 Aligned_cols=85 Identities=12% Similarity=-0.003 Sum_probs=44.3
Q ss_pred ceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEec------CCCcc--ccCcccccccHHHHHHHhhcCceEEEe--
Q psy786 77 YRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDI------NRLGQ--SEPTSLQHQTEVYRKRLDAFGFNAVVV-- 146 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~n------n~~~~--~~~~~~~~~~~~~~~~a~a~G~~~~~v-- 146 (176)
.++++++|..+... .......+..+++|.+-.-..+ ..|.. .+.........-+.++.+.|+|+.+.+
T Consensus 102 ~~vvavIG~~~S~~--s~~va~i~~~~~IP~Is~~sts~~lsd~~~yp~ffRt~psd~~q~~ai~~li~~f~W~~Vaiv~ 179 (469)
T cd06365 102 RKSVAVIGGPSWAL--SATIATLLGLYKFPQLTYGPFDPLLSDRVQFPSLYQMAPKDTSLPLGMVSLMLHFSWTWVGLVI 179 (469)
T ss_pred CceEEEEcCCccHH--HHHHHHHhhhhcccceeeccCCccccchhhCCcceEecCCchhHHHHHHHHHHhcCCeEEEEEE
Confidence 56899999988763 3333455667899965331111 11110 000001111234567778899987752
Q ss_pred -cCCCHHHHHHHHHHHHh
Q psy786 147 -DGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 147 -dG~d~~~l~~al~~a~~ 163 (176)
|...-....+++.++++
T Consensus 180 ~d~~yg~~~~~~~~~~~~ 197 (469)
T cd06365 180 SDDDRGEQFLSDLREEMQ 197 (469)
T ss_pred ecChhHHHHHHHHHHHHH
Confidence 32223445556666654
No 306
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=39.15 E-value=1e+02 Score=26.26 Aligned_cols=80 Identities=20% Similarity=0.213 Sum_probs=53.4
Q ss_pred cceEEEEECCCccCCchHHHHHHHhhh--cCCCcEE--EEEecCCCccccC--c--c------cccc---cHHHHHHHhh
Q psy786 76 SYRTYCLVGDGESAEGSIWEALHFASY--YKLDNLC--VIFDINRLGQSEP--T--S------LQHQ---TEVYRKRLDA 138 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~~eal~~a~~--~~lp~li--iV~~nn~~~~~~~--~--~------~~~~---~~~~~~~a~a 138 (176)
+-..+.+.=|-.+..| ..+-|..+.. -++|+|. ||++ .|++... . . ..+. -.++.++++.
T Consensus 152 GA~aISVLTd~~~F~G-s~e~L~~vr~~~v~lPvLrKDFIID--~yQI~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~ 228 (338)
T PLN02460 152 GAACLSVLTDEKYFQG-SFENLEAIRNAGVKCPLLCKEFIVD--AWQIYYARSKGADAILLIAAVLPDLDIKYMLKICKS 228 (338)
T ss_pred CCcEEEEecCcCcCCC-CHHHHHHHHHcCCCCCEeeccccCC--HHHHHHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHH
Confidence 4568889999998887 4566877776 3799654 4443 2332110 0 0 0011 2467889999
Q ss_pred cCceEE-EecCCCHHHHHHHHHH
Q psy786 139 FGFNAV-VVDGHDVEHLVKVSSF 160 (176)
Q Consensus 139 ~G~~~~-~vdG~d~~~l~~al~~ 160 (176)
+|+... +| ||.+|+..|++.
T Consensus 229 LGme~LVEV--H~~~ElerAl~~ 249 (338)
T PLN02460 229 LGMAALIEV--HDEREMDRVLGI 249 (338)
T ss_pred cCCeEEEEe--CCHHHHHHHHhc
Confidence 999988 67 699999988864
No 307
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=39.08 E-value=99 Score=25.36 Aligned_cols=66 Identities=11% Similarity=-0.012 Sum_probs=31.5
Q ss_pred HHhhhcCCCcEEEEEecCCCccccCcccccccHHH----HHHHhhcCceEEEec-CCCHHHHHHHHHHHHhhCCCcEEE
Q psy786 98 HFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVY----RKRLDAFGFNAVVVD-GHDVEHLVKVSSFKLQKAIGCVWI 171 (176)
Q Consensus 98 ~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~----~~~a~a~G~~~~~vd-G~d~~~l~~al~~a~~~~~~P~lI 171 (176)
.-|.+|++|.+.+++--+. .+... .....++ ++++.-+|.+.++++ -.|++. ++++++.+..|++|
T Consensus 137 ~~a~~~Gmp~v~~~YpRg~-~~~~~---~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e~----F~~vv~~~~vpVvi 207 (265)
T COG1830 137 EDAHELGMPLVAWAYPRGP-AIKDE---YHRDADLVGYAARLAAELGADIIKTKYTGDPES----FRRVVAACGVPVVI 207 (265)
T ss_pred HHHHHcCCceEEEEeccCC-ccccc---ccccHHHHHHHHHHHHHhcCCeEeecCCCChHH----HHHHHHhCCCCEEE
Confidence 4555799997766653221 11110 0011222 235566677777764 113333 33443334466665
No 308
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=39.02 E-value=58 Score=24.45 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=26.1
Q ss_pred HHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh
Q psy786 131 VYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 131 ~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~ 163 (176)
...++|+.+|++++.++ ...+.++.|+.+|+.
T Consensus 134 ~~~~~A~~~gl~~v~i~-sg~esi~~Al~eA~~ 165 (176)
T PF06506_consen 134 VVCRLARKLGLPGVLIE-SGEESIRRALEEALR 165 (176)
T ss_dssp HHHHHHHHTTSEEEESS---HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEE-ecHHHHHHHHHHHHH
Confidence 45688999999999996 358899999999974
No 309
>KOG1185|consensus
Probab=38.90 E-value=1.8e+02 Score=26.29 Aligned_cols=43 Identities=14% Similarity=0.031 Sum_probs=25.1
Q ss_pred HHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEE
Q psy786 65 MAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCV 110 (176)
Q Consensus 65 ~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~lii 110 (176)
+|-|..|+.+.-...+++.|-|-.. ...++.-|.....|++++
T Consensus 66 AA~A~gyLt~kpGV~lVvsGPGl~h---al~gv~NA~~n~wPll~I 108 (571)
T KOG1185|consen 66 AASAYGYLTGKPGVLLVVSGPGLTH---ALAGVANAQMNCWPLLLI 108 (571)
T ss_pred HHHHhhhhcCCCeEEEEecCChHHH---HHHHhhhhhhccCcEEEE
Confidence 3333334433345566667777765 344577777778895444
No 310
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=38.12 E-value=65 Score=28.90 Aligned_cols=43 Identities=14% Similarity=0.075 Sum_probs=27.2
Q ss_pred cceEEEEECCCccCCchH--------HHHHHHhhhcCCCcEEEEEecCCCcc
Q psy786 76 SYRTYCLVGDGESAEGSI--------WEALHFASYYKLDNLCVIFDINRLGQ 119 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~--------~eal~~a~~~~lp~liiV~~nn~~~~ 119 (176)
+++|+++.-|.++.-|.. ..++..|.+.++| +|.+++..+-.+
T Consensus 81 Gr~v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~lP-lV~l~dSgGarm 131 (512)
T TIGR01117 81 GRLVYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMGAP-VVGLNDSGGARI 131 (512)
T ss_pred CEEEEEEEECCcccccCCCHHHHHHHHHHHHHHHHcCCC-EEEEecCCCCCc
Confidence 467777778877765543 2344566677788 566666666544
No 311
>PLN02229 alpha-galactosidase
Probab=38.05 E-value=76 Score=27.86 Aligned_cols=42 Identities=7% Similarity=-0.005 Sum_probs=33.0
Q ss_pred HHHHhhcCceEEEecCC-----CHHHHHHHHHHHHhhCCCcEEEEee
Q psy786 133 RKRLDAFGFNAVVVDGH-----DVEHLVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 133 ~~~a~a~G~~~~~vdG~-----d~~~l~~al~~a~~~~~~P~lI~~~ 174 (176)
++.+...|++++++|+. +..+-+.++++|+.+..+|.+..++
T Consensus 169 A~~fA~WGVDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~SlC 215 (427)
T PLN02229 169 ADIFASWGVDYLKYDNCYNLGIKPIERYPPMRDALNATGRSIFYSLC 215 (427)
T ss_pred HHHHHHcCCCEEEecCCCCCCcchhHHHHHHHHHHHhhCCCcEEEec
Confidence 45566789999999853 4567788999999888889888764
No 312
>PRK08227 autoinducer 2 aldolase; Validated
Probab=37.77 E-value=1.2e+02 Score=24.80 Aligned_cols=65 Identities=8% Similarity=-0.077 Sum_probs=33.4
Q ss_pred HHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 98 HFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 98 ~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
..|.+|++|++. ++- .+-.+..... -....++++.-+|.+.++++ -+. +.+++.++..+.|++|-
T Consensus 134 ~ea~~~G~Plla-~~p-rG~~~~~~~~---~ia~aaRiaaELGADiVK~~--y~~---~~f~~vv~a~~vPVvia 198 (264)
T PRK08227 134 DAGLRYGMPVMA-VTA-VGKDMVRDAR---YFSLATRIAAEMGAQIIKTY--YVE---EGFERITAGCPVPIVIA 198 (264)
T ss_pred HHHHHhCCcEEE-Eec-CCCCcCchHH---HHHHHHHHHHHHcCCEEecC--CCH---HHHHHHHHcCCCcEEEe
Confidence 456689999554 331 1111111000 01123456666788888885 122 45555555456787764
No 313
>PRK14976 5'-3' exonuclease; Provisional
Probab=37.52 E-value=2.3e+02 Score=23.21 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=27.8
Q ss_pred HHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh
Q psy786 130 EVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~ 163 (176)
+.+.++.+++|++++.++|...+++..++.....
T Consensus 93 ~~i~~~l~~~gi~~~~~~g~EADDviatla~~~~ 126 (281)
T PRK14976 93 PLLKKILKLAGIKWEEQPGYEADDLIGSLAKKLS 126 (281)
T ss_pred HHHHHHHHHCCCCEEecCCcCHHHHHHHHHHHHH
Confidence 4566788999999999998888888888866543
No 314
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=37.40 E-value=2.5e+02 Score=24.35 Aligned_cols=57 Identities=11% Similarity=0.131 Sum_probs=33.0
Q ss_pred EEEEECCCccCCchHHHHHHH-hhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHH
Q psy786 79 TYCLVGDGESAEGSIWEALHF-ASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHL 154 (176)
Q Consensus 79 vv~~~GDG~~~~G~~~eal~~-a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l 154 (176)
.|+....|-... ++.. |+..+++.++++-+ +- +..-.+..++||.+++.+++ +.++.
T Consensus 136 ~VV~aSsGN~G~-----alA~~a~~~G~~~~IvvP~-~~------------~~~K~~~ira~GAeVv~v~~-~~~~a 193 (404)
T cd06447 136 SIAVGSTGNLGL-----SIGIMAAALGFKVTVHMSA-DA------------KQWKKDKLRSKGVTVVEYET-DYSKA 193 (404)
T ss_pred EEEEECccHHHH-----HHHHHHHHcCCCEEEEECC-CC------------cHHHHHHHHHCCCEEEEECC-CHHHH
Confidence 455555555543 3444 44688995444422 21 23345678899999998874 44443
No 315
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=37.13 E-value=42 Score=26.15 Aligned_cols=46 Identities=20% Similarity=-0.016 Sum_probs=29.1
Q ss_pred cceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc
Q psy786 76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS 124 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~ 124 (176)
|..+|.+.|||+.. +...+.-..-+..+.| ++-+|.-.|-.+..+.
T Consensus 2 Dt~~v~~SGDgGw~-~~d~~~a~~l~~~G~~--VvGvdsl~Yfw~~rtP 47 (192)
T PF06057_consen 2 DTLAVFFSGDGGWR-DLDKQIAEALAKQGVP--VVGVDSLRYFWSERTP 47 (192)
T ss_pred CEEEEEEeCCCCch-hhhHHHHHHHHHCCCe--EEEechHHHHhhhCCH
Confidence 56799999999997 3444433344566777 3555655666654443
No 316
>PRK06823 ornithine cyclodeaminase; Validated
Probab=36.83 E-value=2.2e+02 Score=23.68 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=37.3
Q ss_pred HHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEE
Q psy786 65 MAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAV 144 (176)
Q Consensus 65 ~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~ 144 (176)
.+++.+++..++..+++++|=|..... ..++ ++..+++. -+.|++-+. .....+.+.++..|++..
T Consensus 116 sala~~~La~~d~~~l~iiG~G~qA~~-~~~a--~~~v~~i~-~v~v~~r~~----------~~a~~~~~~~~~~~~~v~ 181 (315)
T PRK06823 116 GRIVARLLAPQHVSAIGIVGTGIQARM-QLMY--LKNVTDCR-QLWVWGRSE----------TALEEYRQYAQALGFAVN 181 (315)
T ss_pred HHHHHHHhcCCCCCEEEEECCcHHHHH-HHHH--HHhcCCCC-EEEEECCCH----------HHHHHHHHHHHhcCCcEE
Confidence 344555666668889999999987642 2333 33334554 445544111 011234444555567666
Q ss_pred Eec
Q psy786 145 VVD 147 (176)
Q Consensus 145 ~vd 147 (176)
.++
T Consensus 182 ~~~ 184 (315)
T PRK06823 182 TTL 184 (315)
T ss_pred EEC
Confidence 564
No 317
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=36.43 E-value=4.1e+02 Score=25.81 Aligned_cols=106 Identities=8% Similarity=-0.055 Sum_probs=59.3
Q ss_pred HHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhc-
Q psy786 61 VAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAF- 139 (176)
Q Consensus 61 ~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~- 139 (176)
.|+|.+++.- +.+-.+.+.... .|......+-++.+.-++.++++++....+.........-....+.. ++++.
T Consensus 590 ~AAG~a~a~~--G~g~iPf~~tfs--~F~~~R~~Dqir~a~~~~~~~vlig~T~gg~tlg~dG~THQ~~esla-l~RaIP 664 (896)
T PRK13012 590 IAAATSYSVH--GLPMLPFYIYYS--MFGFQRVGDLIWAAADQRARGFLLGATAGRTTLGGEGLQHQDGHSHL-LASTIP 664 (896)
T ss_pred HHHHhhHHhc--CCCcEEEEEehH--HHHHHHHHHHHHHHHhcccCCeEEEEeCcccccCCCCCCCcchHhHH-HHHhCC
Confidence 5666666642 111123333333 44333566767777777777677877777765543211112223443 55554
Q ss_pred CceEEEecCCCHHHHHHHHHHHHhh-----CCCcEEEEe
Q psy786 140 GFNAVVVDGHDVEHLVKVSSFKLQK-----AIGCVWIQR 173 (176)
Q Consensus 140 G~~~~~vdG~d~~~l~~al~~a~~~-----~~~P~lI~~ 173 (176)
++.++.= .|..|+..+++.++++ .++|+.|-.
T Consensus 665 N~~V~~P--ADa~E~a~iv~~al~~m~~~~~~~p~YIrL 701 (896)
T PRK13012 665 NCRAYDP--AFAYELAVIVDDGMRRMLEEQEDVFYYLTV 701 (896)
T ss_pred CCEEEeC--CCHHHHHHHHHHHHHHHHhccCCCeEEEEe
Confidence 6666643 3788899999887743 256766543
No 318
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=36.31 E-value=2e+02 Score=22.43 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=7.5
Q ss_pred HHHhhcCceEEEe
Q psy786 134 KRLDAFGFNAVVV 146 (176)
Q Consensus 134 ~~a~a~G~~~~~v 146 (176)
++|+.+|++++..
T Consensus 43 ~~A~~~gIp~~~~ 55 (207)
T PLN02331 43 EYARENGIPVLVY 55 (207)
T ss_pred HHHHHhCCCEEEe
Confidence 4556666666544
No 319
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=35.94 E-value=2e+02 Score=22.08 Aligned_cols=85 Identities=14% Similarity=0.141 Sum_probs=46.0
Q ss_pred ceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCcc--ccCc------ccccccHHHHHHHhhcCceEEEe--
Q psy786 77 YRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQ--SEPT------SLQHQTEVYRKRLDAFGFNAVVV-- 146 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~--~~~~------~~~~~~~~~~~~a~a~G~~~~~v-- 146 (176)
..+.+++|..+... .......+..+++|.+-+-.......- ..+. .......-+.++.+.+||+.+.+
T Consensus 70 ~~v~aiiG~~~s~~--~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~l~~~~w~~v~~v~ 147 (298)
T cd06269 70 RGVVAVIGPSSSSS--AEAVASLLGALHIPQISYSATSPLLSDKEQFPSFLRTVPSDSSQAQAIVDLLKHFGWTWVGLVY 147 (298)
T ss_pred CceEEEECCCCchH--HHHHHHHhccCCCcEEecccCchhhcChhhCCCeEecCCCcHHHHHHHHHHHHHCCCeEEEEEE
Confidence 46999999987763 233345666789995544333222211 0000 00001133566778889987743
Q ss_pred c-CCCHHHHHHHHHHHHh
Q psy786 147 D-GHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 147 d-G~d~~~l~~al~~a~~ 163 (176)
+ .....++.+.+++.++
T Consensus 148 ~~~~~~~~~~~~~~~~~~ 165 (298)
T cd06269 148 SDDDYGRRLLELLEEELE 165 (298)
T ss_pred ecchhhHHHHHHHHHHHH
Confidence 3 2224566677766654
No 320
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=35.76 E-value=43 Score=29.03 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=23.1
Q ss_pred HHHHHhhcCceEEEecCCCHHHHHHHHHH
Q psy786 132 YRKRLDAFGFNAVVVDGHDVEHLVKVSSF 160 (176)
Q Consensus 132 ~~~~a~a~G~~~~~vdG~d~~~l~~al~~ 160 (176)
+...++-+||++..||..|++++++++++
T Consensus 118 f~~tl~~~Gi~v~fvd~~d~~~~~~aI~~ 146 (426)
T COG2873 118 FSHTLKRLGIEVRFVDPDDPENFEAAIDE 146 (426)
T ss_pred HHHHHHhcCcEEEEeCCCCHHHHHHHhCc
Confidence 45557889999999998888888877754
No 321
>PLN02692 alpha-galactosidase
Probab=35.68 E-value=82 Score=27.53 Aligned_cols=42 Identities=17% Similarity=0.125 Sum_probs=32.2
Q ss_pred HHHHhhcCceEEEecCC-----CHHHHHHHHHHHHhhCCCcEEEEee
Q psy786 133 RKRLDAFGFNAVVVDGH-----DVEHLVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 133 ~~~a~a~G~~~~~vdG~-----d~~~l~~al~~a~~~~~~P~lI~~~ 174 (176)
++.+...|++++++|+- ++.+-+.++.+|+.+..+|.+..++
T Consensus 163 A~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~SlC 209 (412)
T PLN02692 163 AKTFASWGIDYLKYDNCNNDGSKPTVRYPVMTRALMKAGRPIFFSLC 209 (412)
T ss_pred HHHHHhcCCCEEeccccCCCCcchhHHHHHHHHHHHHhCCCeEEEec
Confidence 45566789999999843 3456788899999888899887764
No 322
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=35.58 E-value=2e+02 Score=25.44 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=15.9
Q ss_pred HHHHhhhcCCCcEEEEEecCCCc
Q psy786 96 ALHFASYYKLDNLCVIFDINRLG 118 (176)
Q Consensus 96 al~~a~~~~lp~liiV~~nn~~~ 118 (176)
+-..|...++| +++|+|..+++
T Consensus 103 TA~lAk~l~~P-VvLVid~~~~s 124 (451)
T COG1797 103 TADLAKLLGAP-VVLVVDASGLS 124 (451)
T ss_pred HHHHHHHhCCC-EEEEEeCcchh
Confidence 45688899999 66777755543
No 323
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=35.12 E-value=3.4e+02 Score=24.57 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=19.4
Q ss_pred EEEEECCCccCCchHHHHHHHhhhcCCCcEEE
Q psy786 79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCV 110 (176)
Q Consensus 79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~lii 110 (176)
+-..+|-|+.++ . -+-.+|...+||+|++
T Consensus 87 ~tsSiGPGA~Nm--v-TaAalA~~NrlPvLll 115 (617)
T COG3962 87 VTSSIGPGAANM--V-TAAALAHVNRLPVLLL 115 (617)
T ss_pred EecccCCcHHHH--H-HHHHHHHhhcCceEee
Confidence 334579999884 2 3456777788996655
No 324
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=34.97 E-value=2.1e+02 Score=22.08 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=30.4
Q ss_pred ceEEEEECCCccCCchHHHHHHHhhhcCCCc-EEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEec
Q psy786 77 YRTYCLVGDGESAEGSIWEALHFASYYKLDN-LCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVD 147 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~-liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vd 147 (176)
+.+|.+.|+|+... ...+++ .+.+++. +++|+-|+.- ....++|+..|++++.++
T Consensus 3 ki~vl~sg~gs~~~-~ll~~~---~~~~~~~~I~~vvs~~~~------------~~~~~~a~~~gIp~~~~~ 58 (200)
T PRK05647 3 RIVVLASGNGSNLQ-AIIDAC---AAGQLPAEIVAVISDRPD------------AYGLERAEAAGIPTFVLD 58 (200)
T ss_pred eEEEEEcCCChhHH-HHHHHH---HcCCCCcEEEEEEecCcc------------chHHHHHHHcCCCEEEEC
Confidence 47888889998865 233332 2222332 2333343320 113567888899988754
No 325
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=34.08 E-value=1.2e+02 Score=22.78 Aligned_cols=44 Identities=11% Similarity=0.094 Sum_probs=25.5
Q ss_pred HHHHHHHhhcCceEEEec--CC-------CHHHHHHHHHHHHhhCCCcEEEEe
Q psy786 130 EVYRKRLDAFGFNAVVVD--GH-------DVEHLVKVSSFKLQKAIGCVWIQR 173 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vd--G~-------d~~~l~~al~~a~~~~~~P~lI~~ 173 (176)
.+....++..|++.+.+. .. +.+.+.++++..++..+.|++|+=
T Consensus 46 ~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC 98 (164)
T PF03162_consen 46 QDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHC 98 (164)
T ss_dssp HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-
T ss_pred HHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCCCCCCEEEEe
Confidence 345557788888877552 11 356777788776666788999873
No 326
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=32.96 E-value=3e+02 Score=23.13 Aligned_cols=84 Identities=13% Similarity=-0.018 Sum_probs=43.0
Q ss_pred ceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCC------CccccCcccccccHHHHHHHhhcCceEEEe--cC
Q psy786 77 YRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINR------LGQSEPTSLQHQTEVYRKRLDAFGFNAVVV--DG 148 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~------~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v--dG 148 (176)
..|.+++|..+... ..-....+.++++|.+..-..+.. |..-..+. .....-+..+.+.|+|+-+.+ +.
T Consensus 65 ~~V~aviGp~~S~~--~~a~a~va~~~~iP~Is~~a~~~~lt~~~~y~~f~r~~-~~~~~~~~~~~~~~~w~~vaii~~~ 141 (382)
T cd06371 65 GYASAFVGPVNPGY--CEAAALLAKEWDKALFSWGCVNYELDDVRSYPTFARTL-PSPSRVLFTVLRYFRWAHVAIVSSP 141 (382)
T ss_pred CCceEEECCCCchH--HHHHHHHHHhcCceEEecccCchhhcCcccCCCceecC-CCcHHHHHHHHHHCCCeEEEEEEec
Confidence 35889999888763 444567788999996543322211 11100000 000122455678888876633 21
Q ss_pred CC-HHHHHHHHHHHHh
Q psy786 149 HD-VEHLVKVSSFKLQ 163 (176)
Q Consensus 149 ~d-~~~l~~al~~a~~ 163 (176)
++ -..+.+.+.++++
T Consensus 142 ~~~~~~~~~~l~~~l~ 157 (382)
T cd06371 142 QDIWVETAQKLASALR 157 (382)
T ss_pred ccchHHHHHHHHHHHH
Confidence 22 2234555555553
No 327
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=32.94 E-value=2.4e+02 Score=21.98 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=31.2
Q ss_pred HhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEE
Q psy786 99 FASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVW 170 (176)
Q Consensus 99 ~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~l 170 (176)
.|.+.+++. ++++..+. ...-.+..+.+|.+++.+++ +.++..+..++..++..+..+
T Consensus 68 ~a~~~g~~~-~v~~p~~~------------~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~a~~~~~~~~~~~~ 125 (244)
T cd00640 68 AAARLGLKC-TIVMPEGA------------SPEKVAQMRALGAEVVLVPG-DFDDAIALAKELAEEDPGAYY 125 (244)
T ss_pred HHHHcCCCE-EEEECCCC------------CHHHHHHHHHCCCEEEEECC-CHHHHHHHHHHHHHhCCCCEe
Confidence 444678884 44444332 12234577889999988875 344444444443322234443
No 328
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=32.88 E-value=1.3e+02 Score=23.05 Aligned_cols=27 Identities=11% Similarity=0.162 Sum_probs=16.9
Q ss_pred cEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEE
Q psy786 107 NLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVV 145 (176)
Q Consensus 107 ~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~ 145 (176)
+.++|++||. ....+..++.+|++++.
T Consensus 63 i~v~vvSNn~------------e~RV~~~~~~l~v~fi~ 89 (175)
T COG2179 63 IKVVVVSNNK------------ESRVARAAEKLGVPFIY 89 (175)
T ss_pred CEEEEEeCCC------------HHHHHhhhhhcCCceee
Confidence 3556666654 23445667888888873
No 329
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=32.21 E-value=2.5e+02 Score=25.81 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=33.2
Q ss_pred cceEEEEECCCccCCc-----hHHHHHHHhhh---cCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEe
Q psy786 76 SYRTYCLVGDGESAEG-----SIWEALHFASY---YKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVV 146 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G-----~~~eal~~a~~---~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v 146 (176)
.+.+++++.||..+.+ ...+++..|.. .+++ +++++-.. + .....-..++|+..|.+++.+
T Consensus 564 ~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~~~i~--~~vIdt~~-~-------~~~~~~~~~lA~~~gg~y~~l 632 (633)
T TIGR02442 564 GRPLLVVITDGRANVADGGEPPTDDARTIAAKLAARGIL--FVVIDTES-G-------FVRLGLAEDLARALGGEYVRL 632 (633)
T ss_pred CceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHhcCCe--EEEEeCCC-C-------CcchhHHHHHHHhhCCeEEec
Confidence 4678889999987642 11233333333 3444 34444222 1 011223567888888888765
No 330
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=32.20 E-value=3.1e+02 Score=23.16 Aligned_cols=84 Identities=14% Similarity=0.090 Sum_probs=45.2
Q ss_pred EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEec-CCCH--HH-H
Q psy786 79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVD-GHDV--EH-L 154 (176)
Q Consensus 79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vd-G~d~--~~-l 154 (176)
+++.+ |+.|.+...+.-..|+++++. .+++++|-- . .-.. +.++ -+.+-+|....-+| ++|+ .. .
T Consensus 66 TlvT~--GgiQSNh~r~tAavA~~lGl~-~v~ile~~~----~-~y~~--ngn~-Ll~~l~G~~~~~~~~~~d~~~~~~~ 134 (323)
T COG2515 66 TLVTY--GGIQSNHVRQTAAVAAKLGLK-CVLILENIE----A-NYLL--NGNL-LLSKLMGAEVRAVDAGTDIGINASA 134 (323)
T ss_pred EEEEe--cccchhHHHHHHHHHHhcCCc-EEEEEeccc----c-cccc--ccch-hhhhhcCceEEEecCCCChhhchhh
Confidence 55544 777776677767777888998 777777544 0 0000 1122 24456777777774 5565 22 2
Q ss_pred HHHHHHHHhhCCCcEEEEe
Q psy786 155 VKVSSFKLQKAIGCVWIQR 173 (176)
Q Consensus 155 ~~al~~a~~~~~~P~lI~~ 173 (176)
....++..++-.+|.+|-.
T Consensus 135 ~~~~e~~~~~g~kpyvIp~ 153 (323)
T COG2515 135 EELAEEVRKQGGKPYVIPE 153 (323)
T ss_pred HHHHHHHHhcCCCCcEecc
Confidence 2222222223356766643
No 331
>PRK07328 histidinol-phosphatase; Provisional
Probab=31.92 E-value=1.7e+02 Score=23.45 Aligned_cols=65 Identities=18% Similarity=0.102 Sum_probs=40.4
Q ss_pred HHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEE-ecCCCHHHHHHHHHHHHh
Q psy786 94 WEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVV-VDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 94 ~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~-vdG~d~~~l~~al~~a~~ 163 (176)
-+.+..+++.+.. +=+|.+++.- +.....+..++.++++.+|.+... -|.|+++++...+++|++
T Consensus 180 ~~il~~~~~~g~~---lEiNt~~~r~--~~~~~yp~~~il~~~~~~g~~itigSDAH~~~~vg~~~~~a~~ 245 (269)
T PRK07328 180 EEALDVIAAAGLA---LEVNTAGLRK--PVGEIYPSPALLRACRERGIPVVLGSDAHRPEEVGFGFAEALA 245 (269)
T ss_pred HHHHHHHHHcCCE---EEEEchhhcC--CCCCCCCCHHHHHHHHHcCCCEEEeCCCCCHHHHhccHHHHHH
Confidence 3445666666643 3345444322 223345567899999999998543 277889988766665543
No 332
>PLN03231 putative alpha-galactosidase; Provisional
Probab=31.50 E-value=1.2e+02 Score=25.99 Aligned_cols=42 Identities=7% Similarity=-0.013 Sum_probs=31.0
Q ss_pred HHHHHhhcCceEEEecCC-----CHHHHHHHHHHHHhhCCCcEEEEe
Q psy786 132 YRKRLDAFGFNAVVVDGH-----DVEHLVKVSSFKLQKAIGCVWIQR 173 (176)
Q Consensus 132 ~~~~a~a~G~~~~~vdG~-----d~~~l~~al~~a~~~~~~P~lI~~ 173 (176)
.++.+...|+.++++|.. ...+-+.++++|+.+..+|++..+
T Consensus 168 ~a~~fA~WGVDylK~D~c~~~~~~~~~~y~~m~~AL~~tGRpIv~Sl 214 (357)
T PLN03231 168 LYDQYASWGIDFIKHDCVFGAENPQLDEILTVSKAIRNSGRPMIYSL 214 (357)
T ss_pred HHHHHHHhCCCEEeecccCCCCcccHHHHHHHHHHHHHhCCCeEEEe
Confidence 456667789999999842 223446689999988888988765
No 333
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=31.02 E-value=2.7e+02 Score=24.03 Aligned_cols=85 Identities=8% Similarity=0.083 Sum_probs=44.7
Q ss_pred CcceEEEEECCCccCCchHHHHHHHhh-----hcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEe-cC
Q psy786 75 ASYRTYCLVGDGESAEGSIWEALHFAS-----YYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVV-DG 148 (176)
Q Consensus 75 ~~~~vv~~~GDG~~~~G~~~eal~~a~-----~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v-dG 148 (176)
.+-.|++.+|.=+-.+..+.+++.... ..-+...++|+|-.......+.........+++.++-.|.++..+ |
T Consensus 183 ~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~~~R~~s~yta~tiAEYfrd~G~dVll~~D- 261 (369)
T cd01134 183 SDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYNVALMAD- 261 (369)
T ss_pred CCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc-
Confidence 455666777776655434555443211 111344566665333221111011111235677777789998865 6
Q ss_pred CCHHHHHHHHHHH
Q psy786 149 HDVEHLVKVSSFK 161 (176)
Q Consensus 149 ~d~~~l~~al~~a 161 (176)
+.....+|+++-
T Consensus 262 -s~tR~A~A~REI 273 (369)
T cd01134 262 -STSRWAEALREI 273 (369)
T ss_pred -ChhHHHHHHHHH
Confidence 666777777765
No 334
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=30.91 E-value=1.1e+02 Score=24.98 Aligned_cols=35 Identities=11% Similarity=0.252 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCceEEEe--cCCCHHHHHHHHHHHHhh
Q psy786 130 EVYRKRLDAFGFNAVVV--DGHDVEHLVKVSSFKLQK 164 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~v--dG~d~~~l~~al~~a~~~ 164 (176)
.-+++.....|++..++ =|+|++++.++++.|.++
T Consensus 24 ~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r 60 (255)
T COG1058 24 AFLADELTELGVDLARITTVGDNPDRIVEALREASER 60 (255)
T ss_pred HHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhC
Confidence 34677778889887743 478999999999999754
No 335
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=30.88 E-value=2e+02 Score=20.52 Aligned_cols=71 Identities=13% Similarity=0.029 Sum_probs=38.4
Q ss_pred HHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEec--CCCH-HHHHHHHHHHHhhCCCcEEEEe
Q psy786 97 LHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVD--GHDV-EHLVKVSSFKLQKAIGCVWIQR 173 (176)
Q Consensus 97 l~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vd--G~d~-~~l~~al~~a~~~~~~P~lI~~ 173 (176)
+.....+++. .|+|+..-+-..... ......+.++..|+.++.+. ...+ ++-..++.++++..++|+|++=
T Consensus 20 ~~~L~~~Gik---tVIdlR~~~E~~~~p---~~~~~~~~a~~~gl~y~~iPv~~~~~~~~~v~~f~~~~~~~~~pvL~HC 93 (135)
T TIGR01244 20 AAQAAQLGFK---TVINNRPDREEESQP---DFAQIKAAAEAAGVTYHHQPVTAGDITPDDVETFRAAIGAAEGPVLAYC 93 (135)
T ss_pred HHHHHHCCCc---EEEECCCCCCCCCCC---CHHHHHHHHHHCCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Confidence 4444555544 666766533221111 11233456677888887652 2211 2334566677766689999874
No 336
>PLN03013 cysteine synthase
Probab=30.55 E-value=3.5e+02 Score=23.76 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=30.7
Q ss_pred eEEEEECCCccCCchHHHHHH-HhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCC
Q psy786 78 RTYCLVGDGESAEGSIWEALH-FASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGH 149 (176)
Q Consensus 78 ~vv~~~GDG~~~~G~~~eal~-~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~ 149 (176)
.+|+-.-.|-+.. ++. .|..++++. ++|+.++- ...-.+..++||.+++.+++.
T Consensus 176 ~~VVeaSSGN~G~-----ALA~~a~~~G~~~-~VvvP~~~------------s~~K~~~ira~GAeVi~v~~~ 230 (429)
T PLN03013 176 SVLVEPTSGNTGI-----GLAFIAASRGYRL-ILTMPASM------------SMERRVLLKAFGAELVLTDPA 230 (429)
T ss_pred cEEEEECCcHHHH-----HHHHHHHHcCCCE-EEEECCCC------------cHHHHHHHHHcCCEEEEECCC
Confidence 3444444454432 343 445688994 44444321 233456788999999988643
No 337
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=30.40 E-value=3.6e+02 Score=23.35 Aligned_cols=32 Identities=9% Similarity=0.241 Sum_probs=22.2
Q ss_pred ceEEEEECCCccCCchHHHHHHHhhhcCCCcEEE
Q psy786 77 YRTYCLVGDGESAEGSIWEALHFASYYKLDNLCV 110 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~lii 110 (176)
..|++++|..+... .......+..+++|.+..
T Consensus 116 ~~V~aiiGp~~S~~--~~ava~~~~~~~iP~Is~ 147 (472)
T cd06374 116 KPIVGVIGPGSSSV--AIQVQNLLQLFNIPQIAY 147 (472)
T ss_pred CCeEEEECCCcchH--HHHHHHHhhhhccccccc
Confidence 46999999888763 333455777889996543
No 338
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=30.24 E-value=1.4e+02 Score=21.58 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=25.7
Q ss_pred HHHHHHHhhcCceEEE--ecCCCHHHHHHHHHHHHh
Q psy786 130 EVYRKRLDAFGFNAVV--VDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~--vdG~d~~~l~~al~~a~~ 163 (176)
.-+.+..+.+|++... +-.+|.+++.++++++++
T Consensus 30 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~ 65 (144)
T TIGR00177 30 PLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVD 65 (144)
T ss_pred HHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHh
Confidence 4567788888987763 235689999999998864
No 339
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=30.10 E-value=2e+02 Score=26.33 Aligned_cols=44 Identities=14% Similarity=0.109 Sum_probs=32.1
Q ss_pred cceEEEEECCCccCCchH--------HHHHHHhhhcCCCcEEEEEecCCCccc
Q psy786 76 SYRTYCLVGDGESAEGSI--------WEALHFASYYKLDNLCVIFDINRLGQS 120 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~--------~eal~~a~~~~lp~liiV~~nn~~~~~ 120 (176)
+++|+++.-|.++.-|.. ...+.+|.++++| +|.++|..+-.+.
T Consensus 128 Gr~V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~lP-lV~l~DSgGarl~ 179 (569)
T PLN02820 128 GRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCRLP-CIYLVDSGGANLP 179 (569)
T ss_pred CEEEEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCC-EEEEEeCCCcCCc
Confidence 478999999977765543 2345678889999 7777888886653
No 340
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=29.86 E-value=2.8e+02 Score=21.85 Aligned_cols=84 Identities=17% Similarity=0.124 Sum_probs=44.7
Q ss_pred CcceEEEEECCCccCCchHHHHHHHhhh----cCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEe-cCC
Q psy786 75 ASYRTYCLVGDGESAEGSIWEALHFASY----YKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVV-DGH 149 (176)
Q Consensus 75 ~~~~vv~~~GDG~~~~G~~~eal~~a~~----~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v-dG~ 149 (176)
++..+|++.|-|++.-. .=|...+.. .+-..+++|-..+.... ..-+.++++.++...... +..
T Consensus 17 ~~~~~v~I~G~~G~GKT--~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~---------~~~~~~i~~~l~~~~~~~~~~~ 85 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKT--TLARQVARDLRIKNRFDGVIWVSLSKNPSL---------EQLLEQILRQLGEPDSSISDPK 85 (287)
T ss_dssp TSSEEEEEEESTTSSHH--HHHHHHHCHHHHCCCCTEEEEEEEES-SCC---------HHHHHHHHHHHTCC-STSSCCS
T ss_pred CCeEEEEEEcCCcCCcc--eeeeeccccccccccccccccccccccccc---------cccccccccccccccccccccc
Confidence 46789999999998742 222333322 23344555444333222 122445666666554333 334
Q ss_pred CHHHHHHHHHHHHhhCCCcEEE
Q psy786 150 DVEHLVKVSSFKLQKAIGCVWI 171 (176)
Q Consensus 150 d~~~l~~al~~a~~~~~~P~lI 171 (176)
+.+++.+.+.+.+. ++++||
T Consensus 86 ~~~~~~~~l~~~L~--~~~~Ll 105 (287)
T PF00931_consen 86 DIEELQDQLRELLK--DKRCLL 105 (287)
T ss_dssp SHHHHHHHHHHHHC--CTSEEE
T ss_pred ccccccccchhhhc--ccccee
Confidence 67777777777763 235544
No 341
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=29.81 E-value=1.4e+02 Score=24.46 Aligned_cols=66 Identities=17% Similarity=0.206 Sum_probs=33.8
Q ss_pred EECCCccCCchHHHHHHHhhhcCCCcEEEEEecCC--Cccc-------cCcccccccHHHHHHHhhcCceEEEec
Q psy786 82 LVGDGESAEGSIWEALHFASYYKLDNLCVIFDINR--LGQS-------EPTSLQHQTEVYRKRLDAFGFNAVVVD 147 (176)
Q Consensus 82 ~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~--~~~~-------~~~~~~~~~~~~~~~a~a~G~~~~~vd 147 (176)
+..||.+..-...+-+..|.++++.+++.|-+.+. .... .+.....-..++.++++.+|++++.+|
T Consensus 36 ~~~~g~~~~~~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiD 110 (313)
T cd02874 36 VDADGTLTGLPDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLINNILALAKKYGYDGVNID 110 (313)
T ss_pred EcCCCCCCCCCCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEe
Confidence 44555543222234455666778886655544331 1100 000001112467778888899888775
No 342
>PHA02567 rnh RnaseH; Provisional
Probab=29.44 E-value=1.6e+02 Score=24.72 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=30.0
Q ss_pred HHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786 132 YRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI 171 (176)
Q Consensus 132 ~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI 171 (176)
+.++.+++|+.++.++|...+++..++.........+++|
T Consensus 112 i~el~~~~gi~~l~~~g~EADDvIgTLA~k~~~~g~~VvI 151 (304)
T PHA02567 112 VDEIKENMPYKVMKIDKAEADDIIAVLTKKFSAEGRPVLI 151 (304)
T ss_pred HHHHHHHCCCCEEEeCCccHHHHHHHHHHHHHhCCCcEEE
Confidence 3456778899999999988999999887765433446655
No 343
>smart00594 UAS UAS domain.
Probab=29.30 E-value=2e+02 Score=19.98 Aligned_cols=82 Identities=13% Similarity=-0.142 Sum_probs=38.2
Q ss_pred cCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCC
Q psy786 88 SAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIG 167 (176)
Q Consensus 88 ~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~ 167 (176)
|-.|...+++..|.+.+=++++.+..+..-....-....+..+.+.+..+. .+=...+|-++.+.. .+.+.+....=
T Consensus 11 f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg~--~l~~~~~~~~~ 87 (122)
T smart00594 11 FYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEGQ--RVSQFYKLDSF 87 (122)
T ss_pred eeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhHH--HHHHhcCcCCC
Confidence 445567788888887765544444432211110111223444556665554 233334555555542 23333322234
Q ss_pred cEEEE
Q psy786 168 CVWIQ 172 (176)
Q Consensus 168 P~lI~ 172 (176)
|.++-
T Consensus 88 P~~~~ 92 (122)
T smart00594 88 PYVAI 92 (122)
T ss_pred CEEEE
Confidence 66543
No 344
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=29.20 E-value=3.3e+02 Score=22.54 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=31.4
Q ss_pred CCccccCCcccchhHHHHHHHHHhch-hcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCC
Q psy786 45 LNFIDVGTGSLGQGLSVAAGMAYVGK-YFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLD 106 (176)
Q Consensus 45 ~~~~~~~~g~~G~~l~~AvG~A~a~~-~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp 106 (176)
+|.++..+| .+.+.-.++.=.+..+ ..+.-++..|+++||+.-.- ....-+..+++++..
T Consensus 118 vPVINa~~g-~~~HPtQ~LaDl~Ti~e~~g~l~g~~va~vGD~~~~~-v~~Sl~~~~a~~g~~ 178 (301)
T TIGR00670 118 VPVINAGDG-SNQHPTQTLLDLYTIYEEFGRLDGLKIALVGDLKYGR-TVHSLAEALTRFGVE 178 (301)
T ss_pred CCEEeCCCC-CCCCcHHHHHHHHHHHHHhCCCCCCEEEEEccCCCCc-HHHHHHHHHHHcCCE
Confidence 455554443 2334444443333221 12334568999999985321 344446666677765
No 345
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=29.16 E-value=1.7e+02 Score=23.31 Aligned_cols=63 Identities=13% Similarity=0.090 Sum_probs=40.7
Q ss_pred HHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEe-cCCCHHHHHHHHHHHH
Q psy786 95 EALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVV-DGHDVEHLVKVSSFKL 162 (176)
Q Consensus 95 eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v-dG~d~~~l~~al~~a~ 162 (176)
+.+..++..+.. +=+|.+++ ..+.....+...+.++++.+|.+...- |.|.++++..-+++|+
T Consensus 189 ~il~~~~~~g~~---lEiNt~g~--r~~~~~~yP~~~il~~~~~~g~~itlgSDAH~~~~vg~~~~~a~ 252 (253)
T TIGR01856 189 RILKLVASQGKA---LEFNTSGL--RKPLEEAYPSKELLNLAKELGIPLVLGSDAHGPGDVGLSYHKAK 252 (253)
T ss_pred HHHHHHHHcCCE---EEEEcHhh--cCCCCCCCCCHHHHHHHHHcCCCEEecCCCCCHHHHhhhHHHhh
Confidence 444555666643 33454433 223334556678889999999985532 7789999988888775
No 346
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=29.16 E-value=1.9e+02 Score=19.68 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=17.6
Q ss_pred cceEEEEECCCccCCchHHHHHHHhhhcCCC
Q psy786 76 SYRTYCLVGDGESAEGSIWEALHFASYYKLD 106 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp 106 (176)
+..+|++.-.|... ...+.+..|.+.+.+
T Consensus 54 ~d~vi~is~sg~~~--~~~~~~~~ak~~g~~ 82 (131)
T PF01380_consen 54 DDLVIIISYSGETR--ELIELLRFAKERGAP 82 (131)
T ss_dssp TEEEEEEESSSTTH--HHHHHHHHHHHTTSE
T ss_pred cceeEeeeccccch--hhhhhhHHHHhcCCe
Confidence 34566666566555 355667777777766
No 347
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=29.15 E-value=68 Score=29.14 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=25.6
Q ss_pred Hh-hcCceEE-EecCCCHHHHHHHHHHHHhhCCCcE
Q psy786 136 LD-AFGFNAV-VVDGHDVEHLVKVSSFKLQKAIGCV 169 (176)
Q Consensus 136 a~-a~G~~~~-~vdG~d~~~l~~al~~a~~~~~~P~ 169 (176)
++ -+|-+.+ +||=+|.+++++|++++++..-.|.
T Consensus 400 ~e~~iG~PhVytVd~~n~~~v~~Avk~il~~~v~Py 435 (559)
T PF15024_consen 400 AEEFIGEPHVYTVDINNSTEVEAAVKAILATPVEPY 435 (559)
T ss_pred HHhhCCCCeEEEEcCCCHHHHHHHHHHHHhcCCCCc
Confidence 44 4676554 8998999999999999986544453
No 348
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=28.67 E-value=98 Score=25.20 Aligned_cols=79 Identities=22% Similarity=0.238 Sum_probs=51.5
Q ss_pred cceEEEEECCCccCCchHHHHHHHh-hhcCCCcEE--EEEecCCCccccC--cc--------ccc---ccHHHHHHHhhc
Q psy786 76 SYRTYCLVGDGESAEGSIWEALHFA-SYYKLDNLC--VIFDINRLGQSEP--TS--------LQH---QTEVYRKRLDAF 139 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~~eal~~a-~~~~lp~li--iV~~nn~~~~~~~--~~--------~~~---~~~~~~~~a~a~ 139 (176)
+.-.+.+.=|-.+..| ..|-|..+ ..-.+|+|. ||++ .|++... .. ... ...++.+.++.+
T Consensus 79 GAa~iSVLTd~~~F~G-s~e~L~~v~~~v~~PvL~KDFiiD--~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~L 155 (254)
T COG0134 79 GAAAISVLTDPKYFQG-SFEDLRAVRAAVDLPVLRKDFIID--PYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHEL 155 (254)
T ss_pred CCeEEEEecCccccCC-CHHHHHHHHHhcCCCeeeccCCCC--HHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHc
Confidence 3568888899998887 56777666 356799654 3443 2222110 00 001 124678889999
Q ss_pred CceEE-EecCCCHHHHHHHHH
Q psy786 140 GFNAV-VVDGHDVEHLVKVSS 159 (176)
Q Consensus 140 G~~~~-~vdG~d~~~l~~al~ 159 (176)
|+.+. +| ||.+|+.+|++
T Consensus 156 Gm~~LVEV--h~~eEl~rAl~ 174 (254)
T COG0134 156 GMEVLVEV--HNEEELERALK 174 (254)
T ss_pred CCeeEEEE--CCHHHHHHHHh
Confidence 99988 66 69999998886
No 349
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=28.60 E-value=2.9e+02 Score=25.36 Aligned_cols=86 Identities=8% Similarity=0.081 Sum_probs=47.9
Q ss_pred CCcceEEEEECCCccCCchHHHHHHHhh-----hcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEe-c
Q psy786 74 KASYRTYCLVGDGESAEGSIWEALHFAS-----YYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVV-D 147 (176)
Q Consensus 74 ~~~~~vv~~~GDG~~~~G~~~eal~~a~-----~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v-d 147 (176)
+.+-.|++.+|.=+-.+..+.+++.... +--+...++|+|-.+.....+.........+++.++-.|.++.-+ |
T Consensus 252 ~adivVyvg~GERg~E~~e~l~ef~~l~dp~~g~~~m~RTvlVanTSn~Pv~aR~~s~ytgiTiAEYfRd~G~~Vllm~D 331 (586)
T PRK04192 252 DADIVIYVGCGERGNEMTEVLEEFPELIDPKTGRPLMERTVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVLLMAD 331 (586)
T ss_pred CCCEEEEEEcCcChHHHHHHHHHHHhhcccccccccceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEec
Confidence 3466677777777665545555554321 122445667766433221111111112345677788889998855 6
Q ss_pred CCCHHHHHHHHHHH
Q psy786 148 GHDVEHLVKVSSFK 161 (176)
Q Consensus 148 G~d~~~l~~al~~a 161 (176)
+..-..+|+++-
T Consensus 332 --StSR~AeAlREI 343 (586)
T PRK04192 332 --STSRWAEALREI 343 (586)
T ss_pred --ChHHHHHHHHHH
Confidence 666777777765
No 350
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=28.59 E-value=1.6e+02 Score=20.91 Aligned_cols=35 Identities=11% Similarity=0.136 Sum_probs=25.3
Q ss_pred HHHHHHHhhcCceEEE--ecCCCHHHHHHHHHHHHhh
Q psy786 130 EVYRKRLDAFGFNAVV--VDGHDVEHLVKVSSFKLQK 164 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~--vdG~d~~~l~~al~~a~~~ 164 (176)
.-+.++.+.+|++... +-.+|++++.+++++++++
T Consensus 22 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~ 58 (133)
T cd00758 22 PALEALLEDLGCEVIYAGVVPDDADSIRAALIEASRE 58 (133)
T ss_pred HHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhc
Confidence 3456677888887663 3346899999999988753
No 351
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=28.52 E-value=2.1e+02 Score=20.77 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=25.7
Q ss_pred HHHHHHHhhcCceEEE--ecCCCHHHHHHHHHHHHh
Q psy786 130 EVYRKRLDAFGFNAVV--VDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~--vdG~d~~~l~~al~~a~~ 163 (176)
.-+.++++.+|++... +-.+|++++.++++++.+
T Consensus 23 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~ 58 (152)
T cd00886 23 PALVELLEEAGHEVVAYEIVPDDKDEIREALIEWAD 58 (152)
T ss_pred HHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHh
Confidence 3467788889987663 234699999999998874
No 352
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=28.34 E-value=3.2e+02 Score=25.08 Aligned_cols=86 Identities=8% Similarity=0.099 Sum_probs=47.3
Q ss_pred CCcceEEEEECCCccCCchHHHHHHH-----hhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEe-c
Q psy786 74 KASYRTYCLVGDGESAEGSIWEALHF-----ASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVV-D 147 (176)
Q Consensus 74 ~~~~~vv~~~GDG~~~~G~~~eal~~-----a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v-d 147 (176)
+.+-.|++.+|.=+-.+-.+.|++.- ....-+...++|+|-.+.....+.........+++.++-.|.++.-+ |
T Consensus 247 ~adivVyvg~GERG~E~~e~le~f~~l~dp~~g~~~m~RTvlVanTSn~p~~aR~~s~ytg~TiAEYfRD~G~~Vllm~D 326 (578)
T TIGR01043 247 DADIVVYIGCGERGNEMTDVLEEFPELKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMAD 326 (578)
T ss_pred CCCEEEEEEeccChHHHHHHHHHhHhhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEec
Confidence 34667777788776654344444421 11222445667766333222111111112345777888889999855 6
Q ss_pred CCCHHHHHHHHHHH
Q psy786 148 GHDVEHLVKVSSFK 161 (176)
Q Consensus 148 G~d~~~l~~al~~a 161 (176)
+..-..+|+++.
T Consensus 327 --S~sR~AeAlREI 338 (578)
T TIGR01043 327 --STSRWAEAMREI 338 (578)
T ss_pred --ChhHHHHHHHHH
Confidence 677777777775
No 353
>KOG0025|consensus
Probab=27.92 E-value=1.3e+02 Score=25.33 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=23.4
Q ss_pred HHHHHHhhcCceEEEe--cCCCHHHHHHHHHH
Q psy786 131 VYRKRLDAFGFNAVVV--DGHDVEHLVKVSSF 160 (176)
Q Consensus 131 ~~~~~a~a~G~~~~~v--dG~d~~~l~~al~~ 160 (176)
...++++++|++.+.| |-.|.+++.+-|+.
T Consensus 176 ~ViQlaka~GiktinvVRdR~~ieel~~~Lk~ 207 (354)
T KOG0025|consen 176 AVIQLAKALGIKTINVVRDRPNIEELKKQLKS 207 (354)
T ss_pred HHHHHHHHhCcceEEEeecCccHHHHHHHHHH
Confidence 4568999999999965 55678888887764
No 354
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=27.78 E-value=3.9e+02 Score=22.82 Aligned_cols=31 Identities=10% Similarity=0.173 Sum_probs=21.8
Q ss_pred ceEEEEECCCccCCchHHHHHHHhhhcCCCcEE
Q psy786 77 YRTYCLVGDGESAEGSIWEALHFASYYKLDNLC 109 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~li 109 (176)
..|++++|..+... .......+..+++|.+.
T Consensus 102 ~~v~aviG~~~S~~--~~av~~~~~~~~ip~Is 132 (452)
T cd06362 102 KPVAGVIGASYSSV--SIQVANLLRLFKIPQIS 132 (452)
T ss_pred CCeEEEECCCCCch--HHHHHHHhccccCcccc
Confidence 46999999887763 33345567788999543
No 355
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=27.61 E-value=3.8e+02 Score=22.64 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=22.1
Q ss_pred ceEEEEECCCccCCchHHHHHHHhhhcCCCcEE
Q psy786 77 YRTYCLVGDGESAEGSIWEALHFASYYKLDNLC 109 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~li 109 (176)
..|++++|..+... .......+.++++|.+.
T Consensus 106 ~~V~aIiGp~~S~~--~~av~~i~~~~~vp~is 136 (410)
T cd06363 106 PRVVAVIGPDSSTL--ALTVAPLFSFFLIPQIS 136 (410)
T ss_pred CCeEEEECCCccHH--HHHHHHHhccccccccc
Confidence 56999999887653 44446677788998543
No 356
>KOG3107|consensus
Probab=27.25 E-value=1e+02 Score=26.87 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=13.6
Q ss_pred ceEEEEECCCccCCchHHHHHHHhhhcCCC
Q psy786 77 YRTYCLVGDGESAEGSIWEALHFASYYKLD 106 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~~eal~~a~~~~lp 106 (176)
+.++|++||| +|+-..|.+++.|
T Consensus 424 K~~yvvIgdG-------~eee~aAK~ln~P 446 (468)
T KOG3107|consen 424 KVVYVVIGDG-------VEEEQAAKALNMP 446 (468)
T ss_pred ceEEEEecCc-------HHHHHHHHhhCCc
Confidence 5566777766 2334455666666
No 357
>PRK09372 ribonuclease activity regulator protein RraA; Provisional
Probab=26.96 E-value=1.4e+02 Score=22.44 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=14.7
Q ss_pred HHHHHHhhcCceEEEecC--CCHHHHH
Q psy786 131 VYRKRLDAFGFNAVVVDG--HDVEHLV 155 (176)
Q Consensus 131 ~~~~~a~a~G~~~~~vdG--~d~~~l~ 155 (176)
..+..|+..|+.++.+|| .|.+++.
T Consensus 77 ~~~~~a~~~G~~G~VidG~vRD~~~i~ 103 (159)
T PRK09372 77 NLAELAVDNGWEGIVVYGCVRDVDELA 103 (159)
T ss_pred HHHHHHHHcCCeEEEecccccCHHHHh
Confidence 345556667777776665 3444443
No 358
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=26.93 E-value=4.1e+02 Score=23.23 Aligned_cols=54 Identities=13% Similarity=0.258 Sum_probs=33.7
Q ss_pred HHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh
Q psy786 97 LHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 97 l~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~ 163 (176)
-..+++.++.+. +++=+++.+-. -...+..+|.+.+.|+| +.++..+.++++.+
T Consensus 142 aaya~rag~~v~-Vl~P~g~vs~~-----------k~~q~~~~ga~~i~v~G-~fDda~~~vk~~~~ 195 (411)
T COG0498 142 AAYAARAGLKVF-VLYPKGKVSPG-----------KLAQMLTLGAHVIAVDG-NFDDAQELVKEAAN 195 (411)
T ss_pred HHHhccCCCeEE-EEecCCCCCHH-----------HHHHHHhcCCEEEEEcC-cHHHHHHHHHHHHh
Confidence 456778888843 43332322221 12345677889999987 67777777777764
No 359
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=26.87 E-value=87 Score=24.20 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=23.4
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEe
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQR 173 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~ 173 (176)
++|+. .|+ +.+++.++++++. +.+.++|||-
T Consensus 46 S~Gi~--~v~--~~~el~~ai~~~~-~~~~~vlVEe 76 (203)
T PF07478_consen 46 SIGIS--KVH--NEEELEEAIEKAF-KYDDDVLVEE 76 (203)
T ss_dssp TTTEE--EES--SHHHHHHHHHHHT-TTHSEEEEEE
T ss_pred cEEEE--EcC--CHHHHHHHHHHHh-hhcceEEEEe
Confidence 45654 464 8999999999987 4567888874
No 360
>PF08042 PqqA: PqqA family; InterPro: IPR011725 This entry describes a very small protein, coenzyme PQQ biosynthesis protein A, which is smaller than 25 amino acids in many species. It is proposed to serve as a peptide precursor of coenzyme pyrrolo-quinoline-quinone (PQQ), with Glu and Tyr of a conserved motif Glu-Xxx-Xxx-Xxx-Tyr becoming part of the product [].; GO: 0018189 pyrroloquinoline quinone biosynthetic process
Probab=26.85 E-value=44 Score=16.20 Aligned_cols=11 Identities=0% Similarity=-0.103 Sum_probs=8.8
Q ss_pred CCcEEEEeeeC
Q psy786 166 IGCVWIQRGCC 176 (176)
Q Consensus 166 ~~P~lI~~~~~ 176 (176)
.+|.++|+||.
T Consensus 4 ~~P~~~e~~~g 14 (20)
T PF08042_consen 4 TKPKFVEIRVG 14 (20)
T ss_pred cCCceEEeeee
Confidence 47999999873
No 361
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=26.84 E-value=1.6e+02 Score=21.86 Aligned_cols=81 Identities=12% Similarity=0.159 Sum_probs=46.1
Q ss_pred CcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc-ccccHHHH-HHHhhcC------ceEEEe
Q psy786 75 ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL-QHQTEVYR-KRLDAFG------FNAVVV 146 (176)
Q Consensus 75 ~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~-~~~~~~~~-~~a~a~G------~~~~~v 146 (176)
.|..++++-.+-+.+. ...+.+..+..+++| +++++| .++..... ......+. ++.+.++ ++.+.+
T Consensus 94 ~D~ailvVda~~g~~~-~~~~~l~~~~~~~~p-~ivvlN----K~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~ 167 (188)
T PF00009_consen 94 ADIAILVVDANDGIQP-QTEEHLKILRELGIP-IIVVLN----KMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPI 167 (188)
T ss_dssp SSEEEEEEETTTBSTH-HHHHHHHHHHHTT-S-EEEEEE----TCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEE
T ss_pred cccceeeeeccccccc-ccccccccccccccc-eEEeee----eccchhhhHHHHHHHHHHHhccccccCccccceEEEE
Confidence 3667888887766554 567778899999999 666665 22221100 00011222 3434443 346665
Q ss_pred ---cCCCHHHHHHHHHHH
Q psy786 147 ---DGHDVEHLVKVSSFK 161 (176)
Q Consensus 147 ---dG~d~~~l~~al~~a 161 (176)
.|...++|.+++.+.
T Consensus 168 Sa~~g~gi~~Ll~~l~~~ 185 (188)
T PF00009_consen 168 SALTGDGIDELLEALVEL 185 (188)
T ss_dssp BTTTTBTHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 367788888777654
No 362
>TIGR01935 NOT-MenG RraA famliy. This model was initially classified as a "hypothetical equivalog" expressing the tentative hypothesis that all members might have the same function as the E. coli enzyme. Considering the second clade of enterobacterial sequences within this family, that appears to be less tenable. The function of these sequences outside of the narrow RraA equivalog model (TIGR02998) remains obscure. All of these were initially annotated as MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error in the case of the E. coli protein.
Probab=26.71 E-value=1.4e+02 Score=22.24 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=12.6
Q ss_pred HHHHHhhcCceEEEecC--CCHHHH
Q psy786 132 YRKRLDAFGFNAVVVDG--HDVEHL 154 (176)
Q Consensus 132 ~~~~a~a~G~~~~~vdG--~d~~~l 154 (176)
.+..|+..|+.++.+|| .|.+++
T Consensus 74 ~~~~a~~~G~~G~VidG~vRD~~~i 98 (150)
T TIGR01935 74 LAVLAEENGWEGVIVNGCVRDVAEL 98 (150)
T ss_pred HHHHHHHCCCEEEEEeecccCHHHH
Confidence 34455666666666665 344444
No 363
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=26.64 E-value=1.4e+02 Score=21.44 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=26.3
Q ss_pred HHHHHHHhhcCceEEE--ecCCCHHHHHHHHHHHHhh
Q psy786 130 EVYRKRLDAFGFNAVV--VDGHDVEHLVKVSSFKLQK 164 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~--vdG~d~~~l~~al~~a~~~ 164 (176)
.-+.+.++.+|++... +=.+|++++.+++++++++
T Consensus 20 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~ 56 (144)
T PF00994_consen 20 PFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDR 56 (144)
T ss_dssp HHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhcc
Confidence 4567788889998763 3234999999999888754
No 364
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=26.30 E-value=73 Score=26.09 Aligned_cols=42 Identities=14% Similarity=0.076 Sum_probs=27.8
Q ss_pred HHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 130 EVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
.++.+++.+.=++.=+.+..+.+.+..|.+.|- +...|++++
T Consensus 50 ~e~~kia~AL~INIGTL~~~~~~~m~~A~~~An-~~~~PvvLD 91 (265)
T COG2145 50 EEFAKIADALLINIGTLSAERIQAMRAAIKAAN-ESGKPVVLD 91 (265)
T ss_pred HHHHHhccceEEeeccCChHHHHHHHHHHHHHH-hcCCCEEec
Confidence 466777777655544555555667777777663 567899886
No 365
>PLN02735 carbamoyl-phosphate synthase
Probab=26.20 E-value=4.4e+02 Score=26.16 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=45.0
Q ss_pred cceEEEEECCCccCCchHHH-------HHHHhhhcCCCcEEEEEecCCCccccCcc--c-----ccccHHHHHHHhhcCc
Q psy786 76 SYRTYCLVGDGESAEGSIWE-------ALHFASYYKLDNLCVIFDINRLGQSEPTS--L-----QHQTEVYRKRLDAFGF 141 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~~e-------al~~a~~~~lp~liiV~~nn~~~~~~~~~--~-----~~~~~~~~~~a~a~G~ 141 (176)
+++-|.++|=|..+-|...| ++..+.+.++. ++++|+|.-..++... + ....+++.++++-.+.
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~--tI~v~~npetvstd~~~aD~~y~~pl~~e~vl~i~~~e~~ 650 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYE--TIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERP 650 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHHHcCCe--EEEEeCCCccccCCcccCCeEEEEeCCHHHHHHHHHHhCC
Confidence 56788889999988775445 67777777765 5667777766553321 1 1234566677777777
Q ss_pred eEEEe
Q psy786 142 NAVVV 146 (176)
Q Consensus 142 ~~~~v 146 (176)
+++.+
T Consensus 651 d~Vi~ 655 (1102)
T PLN02735 651 DGIIV 655 (1102)
T ss_pred CEEEE
Confidence 76654
No 366
>TIGR01204 bioW 6-carboxyhexanoate--CoA ligase. Alternate name: pimeloyl-CoA synthase.
Probab=26.20 E-value=2e+02 Score=23.08 Aligned_cols=75 Identities=12% Similarity=0.025 Sum_probs=42.9
Q ss_pred hHHHHHHHhhh-cCCCcEE---EEEecCCCcc--ccCcc-cccccHHHHHHHhhcCceEEEecCC-CHHHHHHHHHHHHh
Q psy786 92 SIWEALHFASY-YKLDNLC---VIFDINRLGQ--SEPTS-LQHQTEVYRKRLDAFGFNAVVVDGH-DVEHLVKVSSFKLQ 163 (176)
Q Consensus 92 ~~~eal~~a~~-~~lp~li---iV~~nn~~~~--~~~~~-~~~~~~~~~~~a~a~G~~~~~vdG~-d~~~l~~al~~a~~ 163 (176)
.+.|||.+|.. ...|-++ .+-||-.|.. ..... .....+++.....-.|..++.|++. |++++.+-|
T Consensus 150 r~~eAlaLAsKV~~~pgvvAElC~SDDP~YtTGYVA~~~~gY~RI~~lK~~G~~~GGRvffv~~~~~l~~~i~yL----- 224 (232)
T TIGR01204 150 RTVEALALAFKVLFCPAVVAELCWSDDPDYVTGYVSGKEIGYVRITPLKEKGDELGGRVFFVSRKNELSEYIHCL----- 224 (232)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCCeeEEEEeCCCCeEeCccccccCCCCCCEEEEEeCCCCHHHHHHHH-----
Confidence 57899999885 3465333 3445555532 11111 1222345565556779999999863 444444333
Q ss_pred hCCCcEEEE
Q psy786 164 KAIGCVWIQ 172 (176)
Q Consensus 164 ~~~~P~lI~ 172 (176)
.+.|+||+
T Consensus 225 -E~~pvLI~ 232 (232)
T TIGR01204 225 -EQKPILIE 232 (232)
T ss_pred -hcCcEEeC
Confidence 35888874
No 367
>PRK01322 6-carboxyhexanoate--CoA ligase; Provisional
Probab=26.15 E-value=2.1e+02 Score=23.12 Aligned_cols=76 Identities=20% Similarity=0.120 Sum_probs=43.5
Q ss_pred hHHHHHHHhhhcC-CCcEE---EEEecCCCcc--ccCcc-cccccHHHHHHHhhcCceEEEecCC-CHHHHHHHHHHHHh
Q psy786 92 SIWEALHFASYYK-LDNLC---VIFDINRLGQ--SEPTS-LQHQTEVYRKRLDAFGFNAVVVDGH-DVEHLVKVSSFKLQ 163 (176)
Q Consensus 92 ~~~eal~~a~~~~-lp~li---iV~~nn~~~~--~~~~~-~~~~~~~~~~~a~a~G~~~~~vdG~-d~~~l~~al~~a~~ 163 (176)
.+.|||.+|..-- .|-++ .+-||-.|.. ..... .....++++....-.|..++.|++. |++++.+ -+
T Consensus 157 r~~eAlaLAsKV~~~pgivAElC~SDDP~YtTGYVA~~~~gY~RI~~mK~~G~~~GGRvffv~~~~~~~~~i~----yL- 231 (242)
T PRK01322 157 RTVDALALASKVIAHPGVIAELCWSDDPDYTTGYVATKKLGYHRITNLKEEGTPYGGRIFFVDDSIDLEELIS----YL- 231 (242)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCCeeEEEEeCCCCeEeCccccccCCCCCCEEEEEeCccCHHHHHH----HH-
Confidence 5788999888532 44333 3446555532 21111 1223345666667789999999864 4333332 22
Q ss_pred hCCCcEEEEe
Q psy786 164 KAIGCVWIQR 173 (176)
Q Consensus 164 ~~~~P~lI~~ 173 (176)
.+.|+||+.
T Consensus 232 -E~~pVLI~~ 240 (242)
T PRK01322 232 -ENKPVLIVY 240 (242)
T ss_pred -hcCcEEEEe
Confidence 368999874
No 368
>PRK06988 putative formyltransferase; Provisional
Probab=26.13 E-value=3.3e+02 Score=22.56 Aligned_cols=71 Identities=8% Similarity=-0.061 Sum_probs=36.8
Q ss_pred EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHH
Q psy786 79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVS 158 (176)
Q Consensus 79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al 158 (176)
-|+++|.+.+.. ...++| ...+..++.+ +.+..-. .. ......+.++|+..|++++..+..+-+++.+.+
T Consensus 4 kIvf~Gs~~~a~-~~L~~L---~~~~~~i~~V-vt~~d~~----~~-~~~~~~v~~~A~~~gip~~~~~~~~~~~~~~~l 73 (312)
T PRK06988 4 RAVVFAYHNVGV-RCLQVL---LARGVDVALV-VTHEDNP----TE-NIWFGSVAAVAAEHGIPVITPADPNDPELRAAV 73 (312)
T ss_pred EEEEEeCcHHHH-HHHHHH---HhCCCCEEEE-EcCCCCC----cc-CcCCCHHHHHHHHcCCcEEccccCCCHHHHHHH
Confidence 367888888753 244444 3345554444 4322100 00 111245788999999998864322223444444
Q ss_pred H
Q psy786 159 S 159 (176)
Q Consensus 159 ~ 159 (176)
+
T Consensus 74 ~ 74 (312)
T PRK06988 74 A 74 (312)
T ss_pred H
Confidence 3
No 369
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=26.09 E-value=3.3e+02 Score=24.28 Aligned_cols=90 Identities=10% Similarity=0.140 Sum_probs=49.4
Q ss_pred ceEEEEECCCccCCchH-----HHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcC--ceEEEecCC
Q psy786 77 YRTYCLVGDGESAEGSI-----WEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFG--FNAVVVDGH 149 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~-----~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G--~~~~~vdG~ 149 (176)
..++.+-|=|++..|.. ......|..+++| +++|++....++....... .-+.+.++.-+ +.++-++.-
T Consensus 318 ~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~~P-VILV~~~~~g~i~~~~~~i---~G~~~~l~~~~i~i~GVIlN~v 393 (476)
T PRK06278 318 YDYYIIEGVMGAFTGALNKKNPYSGAEIAKALGFP-VYIVSSCSKSGIEGAFVES---MAYYSLLKKMGVKVEGIILNKV 393 (476)
T ss_pred CCEEEEECCCCcccccCCCCccccHHHHHHHhCCC-EEEEEcCCCChHHHHHHHH---HHHHHHHhcCCCcEEEEEEECC
Confidence 45888889888877621 2345788899999 5666765554432100000 00122332224 344544433
Q ss_pred CHHHHHHHHHHHHhhCCCcEE
Q psy786 150 DVEHLVKVSSFKLQKAIGCVW 170 (176)
Q Consensus 150 d~~~l~~al~~a~~~~~~P~l 170 (176)
..+...+-+++++++..-|+|
T Consensus 394 ~~~~~~~~~~~~le~~gvpVL 414 (476)
T PRK06278 394 YNMEIFEKVKKIAENSNINLI 414 (476)
T ss_pred CcHHHHHHHHHHHHhcCCCEE
Confidence 344566666777766566766
No 370
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=25.98 E-value=2.1e+02 Score=19.06 Aligned_cols=32 Identities=19% Similarity=0.071 Sum_probs=22.0
Q ss_pred HHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh
Q psy786 131 VYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 131 ~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~ 163 (176)
+...-++..|++.+.+. ++++++.+++++.++
T Consensus 8 ~~v~gFrLaGv~~~~~~-~~~ee~~~~l~~l~~ 39 (95)
T PF01990_consen 8 DTVLGFRLAGVEGVYVN-TDPEEAEEALKELLK 39 (95)
T ss_dssp HHHHHHHHTTSEEEEES-HSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCccCC-CCHHHHHHHHHHHhc
Confidence 45556677788887773 367788888877763
No 371
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=25.98 E-value=1.1e+02 Score=26.93 Aligned_cols=37 Identities=14% Similarity=-0.047 Sum_probs=29.1
Q ss_pred hhcCceEEEe-cCCCHHHHHHHHHHHHhhCCCcEEEEeeeC
Q psy786 137 DAFGFNAVVV-DGHDVEHLVKVSSFKLQKAIGCVWIQRGCC 176 (176)
Q Consensus 137 ~a~G~~~~~v-dG~d~~~l~~al~~a~~~~~~P~lI~~~~~ 176 (176)
..||.+++.+ .-.+.++..+++++|+ ++|.+++-+|+
T Consensus 347 D~Ygg~GV~~G~e~~~eeW~~~l~~a~---~~~yilQe~v~ 384 (445)
T PF14403_consen 347 DEYGGKGVYIGWETSPEEWEAALEEAA---REPYILQEYVR 384 (445)
T ss_pred cccCCCCeEECCcCCHHHHHHHHHHHh---cCCcEEEEEec
Confidence 4678888876 3468999999999986 35999998875
No 372
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=25.94 E-value=5.8e+02 Score=24.26 Aligned_cols=77 Identities=12% Similarity=-0.027 Sum_probs=43.2
Q ss_pred EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEe---cCCCHHHHH
Q psy786 79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVV---DGHDVEHLV 155 (176)
Q Consensus 79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v---dG~d~~~l~ 155 (176)
++.++=|++-.+- ...-.....+.++| +++++|=-. ... ... ...+..++.+.+|.+++.+ .|...+++.
T Consensus 88 ~vI~VvDat~ler-~l~l~~ql~e~giP-vIvVlNK~D--l~~--~~~-i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~ 160 (772)
T PRK09554 88 LLINVVDASNLER-NLYLTLQLLELGIP-CIVALNMLD--IAE--KQN-IRIDIDALSARLGCPVIPLVSTRGRGIEALK 160 (772)
T ss_pred EEEEEecCCcchh-hHHHHHHHHHcCCC-EEEEEEchh--hhh--ccC-cHHHHHHHHHHhCCCEEEEEeecCCCHHHHH
Confidence 4444457765432 22222334567899 555555211 111 111 1246777888899988865 466778888
Q ss_pred HHHHHHH
Q psy786 156 KVSSFKL 162 (176)
Q Consensus 156 ~al~~a~ 162 (176)
+++.+..
T Consensus 161 ~~I~~~~ 167 (772)
T PRK09554 161 LAIDRHQ 167 (772)
T ss_pred HHHHHhh
Confidence 8877654
No 373
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=25.40 E-value=2.5e+02 Score=19.84 Aligned_cols=31 Identities=6% Similarity=-0.032 Sum_probs=21.0
Q ss_pred HHHHHHhhcCceEEEec---CCCHHHHHHHHHHH
Q psy786 131 VYRKRLDAFGFNAVVVD---GHDVEHLVKVSSFK 161 (176)
Q Consensus 131 ~~~~~a~a~G~~~~~vd---G~d~~~l~~al~~a 161 (176)
+..++++.++++++.+. |.+.+++...+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 161 (164)
T cd04175 128 QGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQ 161 (164)
T ss_pred HHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence 44567788889888774 56677766666543
No 374
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=25.30 E-value=3.6e+02 Score=25.17 Aligned_cols=87 Identities=11% Similarity=0.115 Sum_probs=50.5
Q ss_pred hchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEe-
Q psy786 68 VGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVV- 146 (176)
Q Consensus 68 a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v- 146 (176)
+++++-+.+..++..+-|.+-.+-...=.+.. -+.+.| +++.+| ..-.. +...-..|..++-+.+|++++..
T Consensus 73 ar~~ll~~~~D~ivnVvDAtnLeRnLyltlQL-lE~g~p-~ilaLN--m~D~A---~~~Gi~ID~~~L~~~LGvPVv~tv 145 (653)
T COG0370 73 ARDFLLEGKPDLIVNVVDATNLERNLYLTLQL-LELGIP-MILALN--MIDEA---KKRGIRIDIEKLSKLLGVPVVPTV 145 (653)
T ss_pred HHHHHhcCCCCEEEEEcccchHHHHHHHHHHH-HHcCCC-eEEEec--cHhhH---HhcCCcccHHHHHHHhCCCEEEEE
Confidence 33333333345788888998776433322222 356888 555554 22222 12222467889999999999843
Q ss_pred --cCCCHHHHHHHHHHH
Q psy786 147 --DGHDVEHLVKVSSFK 161 (176)
Q Consensus 147 --dG~d~~~l~~al~~a 161 (176)
.|...+++.+++-+.
T Consensus 146 A~~g~G~~~l~~~i~~~ 162 (653)
T COG0370 146 AKRGEGLEELKRAIIEL 162 (653)
T ss_pred eecCCCHHHHHHHHHHh
Confidence 567777777666544
No 375
>KOG0369|consensus
Probab=25.04 E-value=1.1e+02 Score=28.89 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=15.2
Q ss_pred CCccCCchHHHHHHHhhhcCCCc
Q psy786 85 DGESAEGSIWEALHFASYYKLDN 107 (176)
Q Consensus 85 DG~~~~G~~~eal~~a~~~~lp~ 107 (176)
||-.. ...|++.++.+|++|+
T Consensus 167 pgPit--t~~EA~eF~k~yG~Pv 187 (1176)
T KOG0369|consen 167 PGPIT--TVEEALEFVKEYGLPV 187 (1176)
T ss_pred CCCcc--cHHHHHHHHHhcCCcE
Confidence 44444 3678888999999983
No 376
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=24.81 E-value=3.4e+02 Score=24.96 Aligned_cols=86 Identities=6% Similarity=0.061 Sum_probs=50.0
Q ss_pred CCcceEEEEECCCccCCchHHHHHHHhh-------hcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEe
Q psy786 74 KASYRTYCLVGDGESAEGSIWEALHFAS-------YYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVV 146 (176)
Q Consensus 74 ~~~~~vv~~~GDG~~~~G~~~eal~~a~-------~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v 146 (176)
+.|-.|++.+|+=+-.+..+.|.+.... .-.+...++|++-.......+.........+++.++-.|.++.-+
T Consensus 251 ~aDviVyvg~GERG~Em~evle~fp~l~dp~~g~~~~~m~rtvlVa~tsd~p~~~R~~s~ytg~tiAEYfRD~G~~Vll~ 330 (591)
T TIGR01042 251 NSDAIVYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMM 330 (591)
T ss_pred CcCEEEEEEEeechHHHHHHHHHhHhhcccccccccccccceEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 4467888888888877656666653322 122445666665433221111111122345677888889998855
Q ss_pred -cCCCHHHHHHHHHHH
Q psy786 147 -DGHDVEHLVKVSSFK 161 (176)
Q Consensus 147 -dG~d~~~l~~al~~a 161 (176)
| +..-..+|+++-
T Consensus 331 ~D--S~tR~AeAlREI 344 (591)
T TIGR01042 331 AD--STSRWAEALREI 344 (591)
T ss_pred ec--ChHHHHHHHHHH
Confidence 6 666777777765
No 377
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=24.66 E-value=2.5e+02 Score=21.98 Aligned_cols=43 Identities=16% Similarity=0.019 Sum_probs=30.4
Q ss_pred HHHHHHhhcCceEEEecCC---CHHHHHHHHHHHHhhCCCcEEEEe
Q psy786 131 VYRKRLDAFGFNAVVVDGH---DVEHLVKVSSFKLQKAIGCVWIQR 173 (176)
Q Consensus 131 ~~~~~a~a~G~~~~~vdG~---d~~~l~~al~~a~~~~~~P~lI~~ 173 (176)
.+.+.+...|.+.+.|-|+ +.+.+.+.++...+..+.|++++.
T Consensus 15 ~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilfp 60 (205)
T TIGR01769 15 KIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILFP 60 (205)
T ss_pred HHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEEC
Confidence 4566677788899988654 567777777665433578999874
No 378
>PLN02569 threonine synthase
Probab=24.64 E-value=4.6e+02 Score=23.35 Aligned_cols=50 Identities=8% Similarity=0.092 Sum_probs=30.4
Q ss_pred HhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHH
Q psy786 99 FASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFK 161 (176)
Q Consensus 99 ~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a 161 (176)
.++..+++.+++|-+ +.. ...-....++||.+++.|+| +.++..+..++.
T Consensus 205 yaa~~Gl~~~I~vP~-~~~-----------~~~k~~qi~a~GA~Vi~v~g-~~d~a~~~a~e~ 254 (484)
T PLN02569 205 YCAAAGIPSIVFLPA-DKI-----------SIAQLVQPIANGALVLSIDT-DFDGCMRLIREV 254 (484)
T ss_pred HHHhcCCeEEEEEcC-CCC-----------CHHHHHHHHhcCCEEEEECC-CHHHHHHHHHHH
Confidence 456789996555532 211 11234466789999999986 566665555554
No 379
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=24.38 E-value=2.9e+02 Score=20.52 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=24.7
Q ss_pred HHHHHHHhhcCceEEE--ecCCCHHHHHHHHHHHHh
Q psy786 130 EVYRKRLDAFGFNAVV--VDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~--vdG~d~~~l~~al~~a~~ 163 (176)
.-++.+.+.+|++... +-.+|.+++.++++++++
T Consensus 25 ~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~ 60 (163)
T TIGR02667 25 QYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIA 60 (163)
T ss_pred HHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHh
Confidence 3456677888887663 334589999999998863
No 380
>PRK12487 ribonuclease activity regulator protein RraA; Reviewed
Probab=24.13 E-value=2.5e+02 Score=21.20 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=13.6
Q ss_pred HHHHHhhcCceEEEecC--CCHHHHH
Q psy786 132 YRKRLDAFGFNAVVVDG--HDVEHLV 155 (176)
Q Consensus 132 ~~~~a~a~G~~~~~vdG--~d~~~l~ 155 (176)
.+..|+..|+.++.+|| .|.+++.
T Consensus 78 ~a~~a~~~G~aG~VidG~vRD~~~i~ 103 (163)
T PRK12487 78 IAQSALDNGWEGIVINGCVRDVGALS 103 (163)
T ss_pred HHHHHHHCCCeEEEEeecccCHHHHh
Confidence 44556666666666665 3444443
No 381
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=24.11 E-value=3.5e+02 Score=22.61 Aligned_cols=31 Identities=3% Similarity=0.067 Sum_probs=21.3
Q ss_pred ceEEEEECCCccCCchHHHHHHHhhhcCCCcEE
Q psy786 77 YRTYCLVGDGESAEGSIWEALHFASYYKLDNLC 109 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~li 109 (176)
..|++++|..+... ..-....+.++++|.+.
T Consensus 71 ~~V~AiiGp~~S~~--~~av~~i~~~~~iP~Is 101 (384)
T cd06393 71 LGVVAIFGPSQGSC--TNAVQSICNALEVPHIQ 101 (384)
T ss_pred cCcEEEECCCChHH--HHHHHHHHhccCCCeEe
Confidence 46999999987763 22334566789999554
No 382
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=24.01 E-value=4.3e+02 Score=25.52 Aligned_cols=51 Identities=18% Similarity=0.079 Sum_probs=27.6
Q ss_pred EEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786 108 LCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI 171 (176)
Q Consensus 108 liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI 171 (176)
-++|+||+. .++..++++.+|+++++-..+ ...-..++..+++.++++.++
T Consensus 294 EViVVDDgS------------~D~t~~la~~~~v~yI~R~~n-~~gKAGnLN~aL~~a~GEyIa 344 (852)
T PRK11498 294 NIWILDDGG------------REEFRQFAQEVGVKYIARPTH-EHAKAGNINNALKYAKGEFVA 344 (852)
T ss_pred EEEEEeCCC------------ChHHHHHHHHCCcEEEEeCCC-CcchHHHHHHHHHhCCCCEEE
Confidence 466777654 244566777778877754321 122233455555555566544
No 383
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=23.98 E-value=1.6e+02 Score=24.52 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=29.8
Q ss_pred cceEEEEECCCccCCchH--------HHHHHHhhhcC-----CCcEEEEEecCCCcc
Q psy786 76 SYRTYCLVGDGESAEGSI--------WEALHFASYYK-----LDNLCVIFDINRLGQ 119 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~--------~eal~~a~~~~-----lp~liiV~~nn~~~~ 119 (176)
.++|+++.=|++++-|.. ..++..|.+.+ +| +|++++-.+-.+
T Consensus 67 Gr~v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~P-vV~l~dSGGaRl 122 (301)
T PRK07189 67 GRPVVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTA-VLLLFETGGVRL 122 (301)
T ss_pred CEEEEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCC-EEEEecCCCcCc
Confidence 468899999988876654 23456677788 88 666677666443
No 384
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=23.85 E-value=4.8e+02 Score=22.54 Aligned_cols=87 Identities=11% Similarity=0.124 Sum_probs=51.8
Q ss_pred CcceEEEEECCC-ccCCchHHHHHHHhhhcCCCcEEEEEecCCC-------------ccc-----cCcccccccHHHHHH
Q psy786 75 ASYRTYCLVGDG-ESAEGSIWEALHFASYYKLDNLCVIFDINRL-------------GQS-----EPTSLQHQTEVYRKR 135 (176)
Q Consensus 75 ~~~~vv~~~GDG-~~~~G~~~eal~~a~~~~lp~liiV~~nn~~-------------~~~-----~~~~~~~~~~~~~~~ 135 (176)
+++.||.+ +=| ++..-....++..|.+.++.|+.++.+.--. .+. ++.....+...|..+
T Consensus 135 Pdk~VVF~-avGFETTaP~~A~~i~~a~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHVs~I~G~~~y~~l 213 (369)
T TIGR00075 135 PDRKVVFF-AIGFETTAPTTASTLLSAKAEDINNFFFLSAHRLVPPAVEALLENPAVQIDAFLAPGHVSTIIGAKPYAPI 213 (369)
T ss_pred CCCeEEEE-ecCchhccHHHHHHHHHHHHcCCCcEEEEEeccccHHHHHHHHcCCCCCccEEEecCEEEEEeccchhHHH
Confidence 35544444 322 2222234455667777889988776653321 111 011112334578889
Q ss_pred HhhcCceEEEecCCCHHHHHHHHHHHHh
Q psy786 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~l~~al~~a~~ 163 (176)
++-|+.+.+ |.|..+.++-.++..-++
T Consensus 214 ~~~y~~P~V-VaGFEp~DiL~~i~~ll~ 240 (369)
T TIGR00075 214 AEKYKIPIV-IAGFEPVDILQAIYMLLK 240 (369)
T ss_pred HHHcCCCeE-EeccCHHHHHHHHHHHHH
Confidence 999999877 468899988888877764
No 385
>PLN02618 tryptophan synthase, beta chain
Probab=23.75 E-value=4.9e+02 Score=22.66 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=35.7
Q ss_pred HHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHH-HhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhc
Q psy786 61 VAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALH-FASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAF 139 (176)
Q Consensus 61 ~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~-~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~ 139 (176)
.+++.++..+..+ .+.+|+-+|-|-. | -++. .|+..+++.++++-. +. +.. + ..+ ..+.+.|
T Consensus 106 ~a~~~~l~A~~~g--~~~vIaesgaGNh--G---~AlA~aaa~~Gl~~~I~m~~-~~--~~~----~--~~n-v~~mr~l 168 (410)
T PLN02618 106 NAVAQALLAKRLG--KKRIIAETGAGQH--G---VATATVCARFGLECIVYMGA-QD--MER----Q--ALN-VFRMRLL 168 (410)
T ss_pred HHHHHHHHHHHcC--CCEEEEEcCcHHH--H---HHHHHHHHHcCCcEEEEEcC-Cc--hhh----h--hhh-HHHHHHC
Confidence 3555555444222 3456666655442 2 2344 445789995444322 21 111 1 112 2468899
Q ss_pred CceEEEe
Q psy786 140 GFNAVVV 146 (176)
Q Consensus 140 G~~~~~v 146 (176)
|.+++.|
T Consensus 169 GA~Vi~v 175 (410)
T PLN02618 169 GAEVRPV 175 (410)
T ss_pred CCEEEEE
Confidence 9999999
No 386
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=23.64 E-value=2.4e+02 Score=19.47 Aligned_cols=36 Identities=14% Similarity=-0.001 Sum_probs=23.0
Q ss_pred cceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEec
Q psy786 76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDI 114 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~n 114 (176)
+..++++.--|... ...+++..|.+.+.| ++.|.++
T Consensus 48 ~dl~I~iS~SG~t~--~~~~~~~~a~~~g~~-vi~iT~~ 83 (120)
T cd05710 48 KSVVILASHSGNTK--ETVAAAKFAKEKGAT-VIGLTDD 83 (120)
T ss_pred CcEEEEEeCCCCCh--HHHHHHHHHHHcCCe-EEEEECC
Confidence 34567776666666 367778888888877 4444443
No 387
>TIGR02998 RraA_entero regulator of ribonuclease activity A. THIS PROTEIN IS _NOT_ MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error .
Probab=23.61 E-value=2.5e+02 Score=21.09 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=9.5
Q ss_pred HHHHHhhcCceEEEecC
Q psy786 132 YRKRLDAFGFNAVVVDG 148 (176)
Q Consensus 132 ~~~~a~a~G~~~~~vdG 148 (176)
.+..|+.-||.++.+||
T Consensus 78 la~~a~~~G~aGvVidG 94 (161)
T TIGR02998 78 LAQLAANNGWEGIVVYG 94 (161)
T ss_pred HHHHHHHCCCeEEEEee
Confidence 34455555666666654
No 388
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=23.50 E-value=4.2e+02 Score=22.28 Aligned_cols=29 Identities=24% Similarity=0.187 Sum_probs=21.0
Q ss_pred cceEEEEECCCccCCchHHHHHHHhhhcCCCc
Q psy786 76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDN 107 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~ 107 (176)
....++++||| .++...-+..++..++.+
T Consensus 152 ~g~k~a~vGDg---NNv~nSl~~~~a~~G~dv 180 (310)
T COG0078 152 KGLKLAYVGDG---NNVANSLLLAAAKLGMDV 180 (310)
T ss_pred cCcEEEEEcCc---chHHHHHHHHHHHhCCeE
Confidence 45899999999 234555566777888883
No 389
>PRK06110 hypothetical protein; Provisional
Probab=23.30 E-value=4.3e+02 Score=21.79 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=26.4
Q ss_pred HHHHHh-hhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHH
Q psy786 95 EALHFA-SYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHL 154 (176)
Q Consensus 95 eal~~a-~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l 154 (176)
.++..+ ++.+++..++ +..+. ...-.+..++||.+++.+++ +.++.
T Consensus 83 ~alA~~a~~~G~~~~iv-vp~~~------------~~~k~~~i~~~GA~V~~~~~-~~~~~ 129 (322)
T PRK06110 83 QSVAFAARRHGLAATIV-VPHGN------------SVEKNAAMRALGAELIEHGE-DFQAA 129 (322)
T ss_pred HHHHHHHHHcCCCEEEE-EcCCC------------CHHHHHHHHHcCCEEEEECC-CHHHH
Confidence 345444 4678994444 33221 11223567999999998864 44443
No 390
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=23.19 E-value=1.7e+02 Score=25.05 Aligned_cols=34 Identities=12% Similarity=0.081 Sum_probs=26.4
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEe
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQR 173 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~ 173 (176)
..|++..+.| .+.+.+..+++.| +..+.|++|++
T Consensus 25 ~~yAVgAfNv--~n~e~~~Avi~AA-Ee~~sPvIlq~ 58 (357)
T TIGR01520 25 NNFAIPAINC--TSSSTINAALEAA-ADVKSPIIIQF 58 (357)
T ss_pred CCceEEEEEe--CCHHHHHHHHHHH-HHhCCCEEEEc
Confidence 4556666666 4898999888877 67899999986
No 391
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=23.12 E-value=2.9e+02 Score=21.26 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=38.0
Q ss_pred HHHhhhcCCCcEEEEEecC-CCccccCcc------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHH
Q psy786 97 LHFASYYKLDNLCVIFDIN-RLGQSEPTS------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKL 162 (176)
Q Consensus 97 l~~a~~~~lp~liiV~~nn-~~~~~~~~~------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~ 162 (176)
..+..++..+ |++++.|| .|.-++... .+.-.....++.+.++.+++.++|.+..+=+....+|+
T Consensus 107 ~~~i~~~r~D-L~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~~~~v~i~~~~y~eR~~~~~~aV 178 (187)
T COG3172 107 QALIAEYRFD-LTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENNIPFVVIEGEDYLERYLQAVEAV 178 (187)
T ss_pred HHHHhhcccc-eEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhCCcEEEEcCCCHHHHHHHHHHHH
Confidence 3456677777 55556555 343333211 11112456788889999999999877655444333444
No 392
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=22.98 E-value=1.7e+02 Score=24.23 Aligned_cols=56 Identities=18% Similarity=-0.007 Sum_probs=0.0
Q ss_pred CcceEEEEECCCccCCchH--------HHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 75 ASYRTYCLVGDGESAEGSI--------WEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 75 ~~~~vv~~~GDG~~~~G~~--------~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
...++++.+=|.+|+.|.. ..++..|...|+|.+++ ..++...-+...-++.++++
T Consensus 120 ~G~pvv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f-------~aSGGARMQEg~lSLMQMak 183 (294)
T COG0777 120 NGLPVVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDKLPLVLF-------SASGGARMQEGILSLMQMAK 183 (294)
T ss_pred CCeEEEEEEEeccccccchhHHHHHHHHHHHHHHHHhCCCEEEE-------ecCcchhHhHHHHHHHHHHH
No 393
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=22.87 E-value=5e+02 Score=22.39 Aligned_cols=70 Identities=19% Similarity=0.153 Sum_probs=44.9
Q ss_pred HHHHHHHhhhcCCCcEEEEEecCCCc-------------cc-----cCcccccccHHHHHHHhhcCceEEEecCCCHHHH
Q psy786 93 IWEALHFASYYKLDNLCVIFDINRLG-------------QS-----EPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHL 154 (176)
Q Consensus 93 ~~eal~~a~~~~lp~liiV~~nn~~~-------------~~-----~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l 154 (176)
...++..|.+.++.|+.++...--.- ++ ++.....+...|..+++-|+.+.+ |.|..+.++
T Consensus 147 ~A~~i~~A~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHVstI~G~~~y~~l~~~y~~P~V-VaGFEp~Di 225 (364)
T PRK15062 147 TAATLLQAKAEGLKNFSVLSSHKLVPPAMRALLEDPELRIDGFIAPGHVSTIIGTEPYEFLAEEYGIPVV-VAGFEPLDI 225 (364)
T ss_pred HHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHcCCCCCccEEEecCEeEEEeccchhHHHHHHcCCCeE-EeccCHHHH
Confidence 34445557788999987766533211 11 011122344678889999999977 468899888
Q ss_pred HHHHHHHHh
Q psy786 155 VKVSSFKLQ 163 (176)
Q Consensus 155 ~~al~~a~~ 163 (176)
-.++-..++
T Consensus 226 L~ai~~lv~ 234 (364)
T PRK15062 226 LQSILMLVR 234 (364)
T ss_pred HHHHHHHHH
Confidence 888877765
No 394
>PF05941 Chordopox_A20R: Chordopoxvirus A20R protein; InterPro: IPR010267 This family consists of several Chordopoxvirus A20R proteins. The A20R protein is required for DNA replication, is associated with the processive form of the viral DNA polymerase, and directly interacts with the viral proteins encoded by the D4R, D5R, and H5R open reading frames. A20R may contribute to the assembly or stability of the multiprotein DNA replication complex [].
Probab=22.65 E-value=2.1e+02 Score=24.25 Aligned_cols=61 Identities=16% Similarity=0.038 Sum_probs=41.2
Q ss_pred cCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEE-----EecCCC--HHHHHHHHHHHHh
Q psy786 103 YKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAV-----VVDGHD--VEHLVKVSSFKLQ 163 (176)
Q Consensus 103 ~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-----~vdG~d--~~~l~~al~~a~~ 163 (176)
-++..+-||.-+|.|-++.-.....++.++-+.+.+.|+++. +|+-.+ -++-+.+++.++.
T Consensus 121 ~di~FlRFv~f~~~wilED~fS~~~~p~~~L~~a~~~Gl~~~p~l~i~V~~~~~F~~~dY~~l~~~f~ 188 (334)
T PF05941_consen 121 PDIEFLRFVYFKNRWILEDAFSKYSSPIEILKLASEEGLNVVPYLRIRVEEDTIFTEEDYDALEAYFL 188 (334)
T ss_pred CCceEEEEEEEcCeEEEeeeccccCCHHHHHHHHHHHhhccCceEEEEEccCcccchhHHHHHHHHHH
Confidence 377888889999999887655555557788888888876533 454212 1456667777664
No 395
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=22.53 E-value=4e+02 Score=21.23 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=25.5
Q ss_pred HHHHhhcCceEEEecCC----------CHHHHHHHHHHHHhh-CCCcEEEEeee
Q psy786 133 RKRLDAFGFNAVVVDGH----------DVEHLVKVSSFKLQK-AIGCVWIQRGC 175 (176)
Q Consensus 133 ~~~a~a~G~~~~~vdG~----------d~~~l~~al~~a~~~-~~~P~lI~~~~ 175 (176)
.+.....|..++.++.. ++++..+.++.|++. .+...+|-+|+
T Consensus 91 v~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ART 144 (238)
T PF13714_consen 91 VRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIART 144 (238)
T ss_dssp HHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEE
T ss_pred HHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEec
Confidence 44555668777777323 567777777777652 23337777776
No 396
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=22.45 E-value=3.3e+02 Score=20.75 Aligned_cols=11 Identities=27% Similarity=0.410 Sum_probs=7.6
Q ss_pred cceEEEEECCC
Q psy786 76 SYRTYCLVGDG 86 (176)
Q Consensus 76 ~~~vv~~~GDG 86 (176)
+-.|.+++-|.
T Consensus 22 ~~~V~~l~R~~ 32 (233)
T PF05368_consen 22 GFSVRALVRDP 32 (233)
T ss_dssp TGCEEEEESSS
T ss_pred CCCcEEEEecc
Confidence 34677777776
No 397
>PF10750 DUF2536: Protein of unknown function (DUF2536); InterPro: IPR019686 This entry represents proteins with unknown function appears to be restricted to Bacillus spp.
Probab=22.32 E-value=2.3e+02 Score=18.23 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHhhCCCcEEEEee
Q psy786 149 HDVEHLVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 149 ~d~~~l~~al~~a~~~~~~P~lI~~~ 174 (176)
+|..+|++.+.+.++ .+++.++++.
T Consensus 18 ~~l~~LEkkIneqIe-~NkailL~V~ 42 (68)
T PF10750_consen 18 NDLQTLEKKINEQIE-HNKAILLEVH 42 (68)
T ss_pred chHHHHHHHHHHHHh-cCceEEEEEE
Confidence 489999999999884 7889988874
No 398
>PHA02031 putative DnaG-like primase
Probab=22.26 E-value=1e+02 Score=25.27 Aligned_cols=74 Identities=16% Similarity=0.126 Sum_probs=39.0
Q ss_pred ceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEE--e-cCCCHHH
Q psy786 77 YRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVV--V-DGHDVEH 153 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~--v-dG~d~~~ 153 (176)
..+|+..|=.=.. |=+....++.-+.+++.+|...-+... .....+++..+|.++.. + +|.||++
T Consensus 183 ~naVA~LGTALT~-----~q~~~L~r~~~~~Vil~fDgD~AG~~A-------a~ra~~~l~~~~~~v~vv~lP~g~DPDd 250 (266)
T PHA02031 183 VFAVALLGTRLRD-----RLAAILLQQTCPRVLIFLDGDPAGVDG-------SAGAMRRLRPLLIEGQVIITPDGFDPKD 250 (266)
T ss_pred ceEEECCcccCCH-----HHHHHHHhcCCCCEEEEeCCCHHHHHH-------HHHHHHHHHHcCCceEEEECCCCCChHH
Confidence 3577777543332 123344454346677777754444321 12233455566665443 3 6999998
Q ss_pred HHH-HHHHHH
Q psy786 154 LVK-VSSFKL 162 (176)
Q Consensus 154 l~~-al~~a~ 162 (176)
+.+ .+++++
T Consensus 251 ~ir~~i~eal 260 (266)
T PHA02031 251 LEREQIRELL 260 (266)
T ss_pred HHHHHHHHHH
Confidence 654 334443
No 399
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=22.25 E-value=4.6e+02 Score=21.74 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=26.3
Q ss_pred HhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEe
Q psy786 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQR 173 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~ 173 (176)
|-..|.+.+-.|-.++++++++++.. ..++.+++|+
T Consensus 204 Al~agaDiImLDNm~~e~~~~av~~l--~~~~~~~lEa 239 (280)
T COG0157 204 ALEAGADIIMLDNMSPEELKEAVKLL--GLAGRALLEA 239 (280)
T ss_pred HHHcCCCEEEecCCCHHHHHHHHHHh--ccCCceEEEE
Confidence 33458888888888888888888764 3456777775
No 400
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=22.08 E-value=2.6e+02 Score=19.09 Aligned_cols=37 Identities=11% Similarity=0.062 Sum_probs=23.5
Q ss_pred cceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecC
Q psy786 76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDIN 115 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn 115 (176)
+..++++.--|... ...+++..|.+.+.| ++.|.++.
T Consensus 48 ~d~vi~iS~sG~t~--~~~~~~~~a~~~g~~-vi~iT~~~ 84 (128)
T cd05014 48 GDVVIAISNSGETD--ELLNLLPHLKRRGAP-IIAITGNP 84 (128)
T ss_pred CCEEEEEeCCCCCH--HHHHHHHHHHHCCCe-EEEEeCCC
Confidence 34566666666665 367778888888877 44444443
No 401
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=22.04 E-value=3.5e+02 Score=20.37 Aligned_cols=33 Identities=30% Similarity=0.417 Sum_probs=18.7
Q ss_pred hHHHHHHHHHhchhcCCCcc-eEEEEECCCccCCc
Q psy786 58 GLSVAAGMAYVGKYFDKASY-RTYCLVGDGESAEG 91 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~-~vv~~~GDG~~~~G 91 (176)
+.+..-++..+...+. +++ ..|.++-||.-..+
T Consensus 116 ~T~l~~aL~~a~~~l~-~~~~~~iillTDG~~~~~ 149 (206)
T cd01456 116 WTPLAAALAEAAAYVD-PGRVNVVVLITDGEDTCG 149 (206)
T ss_pred cChHHHHHHHHHHHhC-CCCcceEEEEcCCCccCC
Confidence 3444445555544443 334 67888888876644
No 402
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=21.99 E-value=2.8e+02 Score=24.40 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=27.9
Q ss_pred ceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCC
Q psy786 77 YRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRL 117 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~ 117 (176)
..++.+-|=|++..|........|..+++| +++|++....
T Consensus 78 ~d~~vIEG~gGl~dg~~~s~adla~~l~~P-viLVv~~~~g 117 (433)
T PRK13896 78 GDICVVEGVMGLYDGDVSSTAMVAEALDLP-VVLVVDAKAG 117 (433)
T ss_pred CCEEEEECCCccccCCCCCHHHHHHHHCCC-EEEEEcCccc
Confidence 358888898887665423356788899999 6677764443
No 403
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=21.97 E-value=5.4e+02 Score=22.47 Aligned_cols=82 Identities=15% Similarity=0.128 Sum_probs=44.6
Q ss_pred CCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccc-----cCcccccc-cHHHHHHHhhcCceEEEec
Q psy786 74 KASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQS-----EPTSLQHQ-TEVYRKRLDAFGFNAVVVD 147 (176)
Q Consensus 74 ~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~-----~~~~~~~~-~~~~~~~a~a~G~~~~~vd 147 (176)
+++-++|++..++--.-..+.++..-+.+ +-|++++.. +..... .++..... ..-|...++-+|+ ++++
T Consensus 201 D~~t~~I~ly~E~~~~~~~f~~aa~~a~~-~KPVv~~k~--Grs~~g~~aa~sHtgalag~~~~~~a~~~~~Gv--~~~~ 275 (447)
T TIGR02717 201 DPDTKVILLYLEGIKDGRKFLKTAREISK-KKPIVVLKS--GTSEAGAKAASSHTGALAGSDEAYDAAFKQAGV--IRAD 275 (447)
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHcC-CCCEEEEec--CCChhhhhhhhhccccccChHHHHHHHHHHCCe--EEeC
Confidence 45667888888864332235555555555 778544433 222111 12211111 2235566676776 4665
Q ss_pred CCCHHHHHHHHHHHHh
Q psy786 148 GHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 148 G~d~~~l~~al~~a~~ 163 (176)
|++|+.++.+ ++.
T Consensus 276 --~~~el~~~~~-~l~ 288 (447)
T TIGR02717 276 --SIEELFDLAR-LLS 288 (447)
T ss_pred --CHHHHHHHHH-HHh
Confidence 8999998875 444
No 404
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=21.96 E-value=3.1e+02 Score=23.00 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=21.8
Q ss_pred eEEEEECCCccCCchHHHHHHHhhhcCCCcEEE
Q psy786 78 RTYCLVGDGESAEGSIWEALHFASYYKLDNLCV 110 (176)
Q Consensus 78 ~vv~~~GDG~~~~G~~~eal~~a~~~~lp~lii 110 (176)
.|.+++|..+... .......+..+++|.+..
T Consensus 67 ~v~aiiGp~~s~~--~~~va~ia~~~~iP~Is~ 97 (387)
T cd06386 67 KPDLILGPVCEYA--AAPVARLASHWNIPMISA 97 (387)
T ss_pred CCCEEECCCCccH--HHHHHHHHHhCCCcEEcc
Confidence 5789999987763 333456777899995543
No 405
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=21.95 E-value=7.5e+02 Score=24.11 Aligned_cols=120 Identities=8% Similarity=-0.093 Sum_probs=66.4
Q ss_pred CccccCCcccchhHH---HHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCC-cccc
Q psy786 46 NFIDVGTGSLGQGLS---VAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRL-GQSE 121 (176)
Q Consensus 46 ~~~~~~~g~~G~~l~---~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~-~~~~ 121 (176)
|+.....|+--+++- .|.|.+++.. + ...+...+--.-|.....+|-++.++..+.++ ++|.-..+. ....
T Consensus 559 p~R~ie~GIAEqnmv~~~iAAGlA~a~~--G--~g~iPf~~tya~F~~~Ra~Dqir~a~~~~a~v-~lvG~~aG~tTlg~ 633 (889)
T TIGR03186 559 DGQILEEGISEAGAISSWIAAATSYSVH--D--LPMLPFYIYYSMFGFQRIGDLIWAAADQRARG-FLIGATSGKTTLGG 633 (889)
T ss_pred CCcEEEechhhHHHHHHHHHHHHhhhhc--C--CCceEEEEehHHhHhhhHHHHHHHHhhcCCCc-EEEEECCCccCCCC
Confidence 333334555555554 4788888754 1 11233334445564446788899998888884 444544554 3332
Q ss_pred CcccccccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhh-----CCCcEEEEe
Q psy786 122 PTSLQHQTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQK-----AIGCVWIQR 173 (176)
Q Consensus 122 ~~~~~~~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~-----~~~P~lI~~ 173 (176)
.........|++ ++++. |+.++. =.|..|+..+++.++++ .++|+.|-.
T Consensus 634 eG~tHq~~eDia-l~r~iPn~tv~~--PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl 688 (889)
T TIGR03186 634 EGLQHQDGTSHL-AASTVPNCRAWD--PAFAYEVAVIVDEGMREMLERQRDEFYYLTV 688 (889)
T ss_pred CcccccchHhHH-HHhhCCCCEEEe--CCCHHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 111112234444 34443 665553 34788888888887641 357877654
No 406
>COG2098 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.78 E-value=1.1e+02 Score=21.59 Aligned_cols=30 Identities=13% Similarity=-0.016 Sum_probs=21.6
Q ss_pred EEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 144 VVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 144 ~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
..|+-.+.+.|.+|+++++ ...|.++++.+
T Consensus 32 tPvs~~~a~~le~aI~esi--~~QP~v~daeV 61 (116)
T COG2098 32 TPVSPGTAESLEKAIEESI--KVQPFVEDAEV 61 (116)
T ss_pred CcCCccchHHHHHHHHHHH--hcCCceeeEEE
Confidence 3454457889999999987 35788877653
No 407
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=21.69 E-value=4.8e+02 Score=22.27 Aligned_cols=31 Identities=23% Similarity=0.043 Sum_probs=21.5
Q ss_pred EEEecCCCHHHHHHHHHHHHhhC----CCcEEEEe
Q psy786 143 AVVVDGHDVEHLVKVSSFKLQKA----IGCVWIQR 173 (176)
Q Consensus 143 ~~~vdG~d~~~l~~al~~a~~~~----~~P~lI~~ 173 (176)
...+|.+|+.++++.++++++.. ...++|++
T Consensus 43 ~~~~d~dD~~~~y~~l~~~l~~~~~~~~~~v~vDi 77 (379)
T PF09670_consen 43 IVIVDPDDPLECYRKLREVLEKLRDFPGHEVAVDI 77 (379)
T ss_pred EeeCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 34557778999999998888644 23466665
No 408
>smart00475 53EXOc 5'-3' exonuclease.
Probab=21.67 E-value=4.4e+02 Score=21.29 Aligned_cols=33 Identities=21% Similarity=0.412 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCceEEEecCCCHHHHHHHHHHHH
Q psy786 130 EVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKL 162 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~ 162 (176)
+.+.++.+.+|++++.+.|...+++...+....
T Consensus 87 ~~~~~~l~~~gi~~i~~~g~EADD~iatla~~~ 119 (259)
T smart00475 87 PLIKELLDALGIPVLEVEGYEADDVIATLAKKA 119 (259)
T ss_pred HHHHHHHHHCCCCEEeeCCcCHHHHHHHHHHHH
Confidence 456778899999999998888888888876643
No 409
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=21.63 E-value=3.8e+02 Score=23.98 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=18.7
Q ss_pred eEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCC
Q psy786 78 RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINR 116 (176)
Q Consensus 78 ~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~ 116 (176)
.-+.++|-|.+.. ...+.| .+.+.| ++++|+|.
T Consensus 418 ~hiiI~G~G~~G~-~la~~L---~~~g~~--vvvId~d~ 450 (558)
T PRK10669 418 NHALLVGYGRVGS-LLGEKL---LAAGIP--LVVIETSR 450 (558)
T ss_pred CCEEEECCChHHH-HHHHHH---HHCCCC--EEEEECCH
Confidence 3567778888864 233322 345666 35566654
No 410
>PRK13598 hisB imidazoleglycerol-phosphate dehydratase; Provisional
Probab=21.47 E-value=4e+02 Score=20.79 Aligned_cols=23 Identities=22% Similarity=-0.039 Sum_probs=13.2
Q ss_pred cceEEEEECCCccCCchHHHHHHHhh
Q psy786 76 SYRTYCLVGDGESAEGSIWEALHFAS 101 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~~eal~~a~ 101 (176)
++.-|.-.|....-| =|+|..++
T Consensus 85 dk~gI~RyG~a~vPM---DEaLa~~~ 107 (193)
T PRK13598 85 DKRGIKRFSHQIIPM---DEALVLVS 107 (193)
T ss_pred Ccccceeeecceecc---hheeeEEE
Confidence 344566677766654 35665544
No 411
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=21.39 E-value=2.4e+02 Score=21.17 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=25.1
Q ss_pred HHHHHHHhhcCceEEE--ecCCCHHHHHHHHHHHHh
Q psy786 130 EVYRKRLDAFGFNAVV--VDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~--vdG~d~~~l~~al~~a~~ 163 (176)
.-+++..+.+|++... +-++|.+++.++++++++
T Consensus 22 ~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~ 57 (170)
T cd00885 22 AFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASE 57 (170)
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh
Confidence 3566777888987663 335689999999998864
No 412
>PRK08245 hypothetical protein; Validated
Probab=21.35 E-value=2.8e+02 Score=22.13 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=26.5
Q ss_pred EEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecC--CCHHHHHH
Q psy786 108 LCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDG--HDVEHLVK 156 (176)
Q Consensus 108 liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG--~d~~~l~~ 156 (176)
=++|+++.+..- ...-.......++..|+.++.+|| .|.+++.+
T Consensus 89 dVlVid~~g~~~-----~a~~G~~~~~~a~~~G~~G~VidG~vRD~~ei~~ 134 (240)
T PRK08245 89 CVLVVDARGDAR-----AGSFGDILCTRLKKRGVAGLVTDGGVRDSPGIAA 134 (240)
T ss_pred eEEEEECCCCCC-----ccccHHHHHHHHHHCCCeEEEEeeccCCHHHHhh
Confidence 566677655211 111123456678888999988887 46666654
No 413
>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A ....
Probab=21.33 E-value=3.2e+02 Score=20.86 Aligned_cols=57 Identities=19% Similarity=0.309 Sum_probs=37.2
Q ss_pred EEEEEecCCCccccCccc-ccccHHHHHHHhhcCceEEE--ecCCCHHHHHHHHHHHHhh
Q psy786 108 LCVIFDINRLGQSEPTSL-QHQTEVYRKRLDAFGFNAVV--VDGHDVEHLVKVSSFKLQK 164 (176)
Q Consensus 108 liiV~~nn~~~~~~~~~~-~~~~~~~~~~a~a~G~~~~~--vdG~d~~~l~~al~~a~~~ 164 (176)
+.+|+.||.|.-...... ......+.+.++.+|+.... .+--+.+++.+++++..+.
T Consensus 2 ~AliIg~~~y~~~~~L~~~~~D~~~~~~~L~~~gf~~~~~l~~~~t~~~i~~~l~~l~~~ 61 (248)
T PF00656_consen 2 RALIIGVNYYQNPPPLPGAVNDAEAMAEALEKLGFDVENILIDNATRANILKALRELLQR 61 (248)
T ss_dssp EEEEEEESSTSSTCHCTTHHHHHHHHHHHHHHTTEEEEEEEEESSSHHHHHHHHHHHHTS
T ss_pred EEEEEEeeCCCCCCCCCCHHHHHHHHHHHHHHcCCceeeccccchHHHHHHHHHhhhhcc
Confidence 346777788866521111 11123566677888999888 6556788999999888743
No 414
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=21.18 E-value=5.3e+02 Score=22.06 Aligned_cols=66 Identities=6% Similarity=0.117 Sum_probs=36.6
Q ss_pred hHHHHHHHhh-hcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEE
Q psy786 92 SIWEALHFAS-YYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVW 170 (176)
Q Consensus 92 ~~~eal~~a~-~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~l 170 (176)
...+.+.+++ ++++|-+|++=. ..+.. =.+..+.||.+++..+ .+.++-.++-++- .+.++.++
T Consensus 84 NHaQGvA~aa~~lGi~a~IvMP~------------~tp~~-Kv~a~r~~GaeVil~g-~~~dda~~~a~~~-a~~~G~~~ 148 (347)
T COG1171 84 NHAQGVAYAAKRLGIKATIVMPE------------TTPKI-KVDATRGYGAEVILHG-DNFDDAYAAAEEL-AEEEGLTF 148 (347)
T ss_pred cHHHHHHHHHHHhCCCEEEEecC------------CCcHH-HHHHHHhcCCEEEEEC-CCHHHHHHHHHHH-HHHcCCEE
Confidence 3445566655 678995555322 11111 1245689999888764 4665555444433 24566666
Q ss_pred EE
Q psy786 171 IQ 172 (176)
Q Consensus 171 I~ 172 (176)
|+
T Consensus 149 i~ 150 (347)
T COG1171 149 VP 150 (347)
T ss_pred eC
Confidence 64
No 415
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=21.17 E-value=1.8e+02 Score=26.63 Aligned_cols=25 Identities=8% Similarity=0.113 Sum_probs=18.8
Q ss_pred HHHHHhhhcCCCcEEEEEecCCCccc
Q psy786 95 EALHFASYYKLDNLCVIFDINRLGQS 120 (176)
Q Consensus 95 eal~~a~~~~lp~liiV~~nn~~~~~ 120 (176)
..+.++.++++| |++++|..++...
T Consensus 392 rfi~lc~~~~iP-lv~l~D~pGf~~G 416 (569)
T PLN02820 392 HFIELCAQRGIP-LLFLQNITGFMVG 416 (569)
T ss_pred HHHHHHHhcCCC-EEEEEECCCCCCC
Confidence 345677789999 7788898888654
No 416
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=21.15 E-value=2.8e+02 Score=18.86 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=22.6
Q ss_pred cceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEec
Q psy786 76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDI 114 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~n 114 (176)
+..+|++.-.|...+ ..+++..|.+.+.+ ++.|-+|
T Consensus 47 ~d~~I~iS~sG~t~e--~~~~~~~a~~~g~~-vi~iT~~ 82 (126)
T cd05008 47 DTLVIAISQSGETAD--TLAALRLAKEKGAK-TVAITNV 82 (126)
T ss_pred CcEEEEEeCCcCCHH--HHHHHHHHHHcCCe-EEEEECC
Confidence 335666666666663 66777777777777 4444443
No 417
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=21.00 E-value=2.9e+02 Score=23.51 Aligned_cols=68 Identities=16% Similarity=0.018 Sum_probs=40.1
Q ss_pred eEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHH
Q psy786 78 RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKV 157 (176)
Q Consensus 78 ~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~a 157 (176)
.++-.-|||.-....+.-+-..++..++|+... .+-+.+.. .-.+++.+++|++... ++++..++
T Consensus 79 Di~GTGGDg~~T~NiSt~aA~v~A~~Gv~VaKH----Gnrs~sSk-------sGsaDvleaLGv~l~~----~~e~~~~~ 143 (338)
T COG0547 79 DIVGTGGDGANTINISTAAAIVAAAAGVPVAKH----GNRSVSSK-------SGSADVLEALGVNLEL----SPEQAARA 143 (338)
T ss_pred CeecCCCCCCCcccchHHHHHHHHhCCCcEEeE----CCCCCCCC-------CcHHHHHHHcCCCCCC----CHHHHHHH
Confidence 455566788876555555555667788884322 22222211 1126788888886442 67777777
Q ss_pred HHH
Q psy786 158 SSF 160 (176)
Q Consensus 158 l~~ 160 (176)
+++
T Consensus 144 l~~ 146 (338)
T COG0547 144 LEE 146 (338)
T ss_pred HHh
Confidence 655
No 418
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=20.96 E-value=5.9e+02 Score=22.53 Aligned_cols=72 Identities=13% Similarity=0.180 Sum_probs=33.9
Q ss_pred ceEEEEECCCccCCchHHHHHHHhhh---cCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHH
Q psy786 77 YRTYCLVGDGESAEGSIWEALHFASY---YKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEH 153 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~~eal~~a~~---~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~ 153 (176)
..+++++|-++..-... ...+|.. .+..+ .+++...|.+.. ...+...++..|++.+.+. ++.+
T Consensus 241 ~~vI~LVGptGvGKTTT--iaKLA~~L~~~GkkV--glI~aDt~RiaA-------vEQLk~yae~lgipv~v~~--d~~~ 307 (436)
T PRK11889 241 VQTIALIGPTGVGKTTT--LAKMAWQFHGKKKTV--GFITTDHSRIGT-------VQQLQDYVKTIGFEVIAVR--DEAA 307 (436)
T ss_pred CcEEEEECCCCCcHHHH--HHHHHHHHHHcCCcE--EEEecCCcchHH-------HHHHHHHhhhcCCcEEecC--CHHH
Confidence 36888999888764333 2333332 23332 233333333221 1123334444555555442 5555
Q ss_pred HHHHHHHH
Q psy786 154 LVKVSSFK 161 (176)
Q Consensus 154 l~~al~~a 161 (176)
+.++++.+
T Consensus 308 L~~aL~~l 315 (436)
T PRK11889 308 MTRALTYF 315 (436)
T ss_pred HHHHHHHH
Confidence 55555544
No 419
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=20.72 E-value=3.1e+02 Score=19.22 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=13.0
Q ss_pred HHHHHHHhhhcCCC-cEEEEEecCC
Q psy786 93 IWEALHFASYYKLD-NLCVIFDINR 116 (176)
Q Consensus 93 ~~eal~~a~~~~lp-~liiV~~nn~ 116 (176)
+.|.|.+....+-| .+++++|+|.
T Consensus 8 ~n~~l~~i~~~~~~~~~~~~lNd~~ 32 (113)
T PF08353_consen 8 FNEVLDMIASDPGPKSVLIALNDNY 32 (113)
T ss_pred HHHHHHHHHhCCCCceEEEEecCCC
Confidence 44567776554433 2555566554
No 420
>PLN02590 probable tyrosine decarboxylase
Probab=20.66 E-value=6.4e+02 Score=22.83 Aligned_cols=44 Identities=23% Similarity=0.143 Sum_probs=29.3
Q ss_pred HHHHHHhhcCc-----eEEEec--C---CCHHHHHHHHHHHHhhCCCcEEEEee
Q psy786 131 VYRKRLDAFGF-----NAVVVD--G---HDVEHLVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 131 ~~~~~a~a~G~-----~~~~vd--G---~d~~~l~~al~~a~~~~~~P~lI~~~ 174 (176)
.+.+.++-+|+ ..+.+| + -|+++|++++++.++.-..|.+|-..
T Consensus 241 Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaT 294 (539)
T PLN02590 241 SFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICAT 294 (539)
T ss_pred HHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 45667777676 233445 2 38899999998876544578877554
No 421
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=20.64 E-value=4.9e+02 Score=21.44 Aligned_cols=83 Identities=16% Similarity=0.133 Sum_probs=41.8
Q ss_pred CCcceEEEEECCCccCCchHHHHHHHhhh-cCCCcEEEEEecCC-Cccc-cCcccc-----cccHHHHHHHhhcCceEEE
Q psy786 74 KASYRTYCLVGDGESAEGSIWEALHFASY-YKLDNLCVIFDINR-LGQS-EPTSLQ-----HQTEVYRKRLDAFGFNAVV 145 (176)
Q Consensus 74 ~~~~~vv~~~GDG~~~~G~~~eal~~a~~-~~lp~liiV~~nn~-~~~~-~~~~~~-----~~~~~~~~~a~a~G~~~~~ 145 (176)
+++-++|++..++- ..+.. ++...+.. .+-|++++..--.. -+.. .++... .....+...++-+|+ ++
T Consensus 196 Dp~T~~I~lylE~~-~~~~~-~~~~~~~~~~~KPVV~lk~Grs~~~g~~~sHTGala~~~~g~~~~~~aa~rqaGv--i~ 271 (286)
T TIGR01019 196 DPETEAIVMIGEIG-GSAEE-EAADFIKQNMSKPVVGFIAGATAPPGKRMGHAGAIISGGKGTAESKIEALEAAGV--TV 271 (286)
T ss_pred CCCCcEEEEEEecC-CchHH-HHHHHHHhcCCCCEEEEEecCCCCccccccchhhhhcCCCCCHHHHHHHHHHCCC--eE
Confidence 35566777777742 22111 33333333 66785444332111 1110 122111 112335566677776 46
Q ss_pred ecCCCHHHHHHHHHHHH
Q psy786 146 VDGHDVEHLVKVSSFKL 162 (176)
Q Consensus 146 vdG~d~~~l~~al~~a~ 162 (176)
++ |++|+.+.+++++
T Consensus 272 v~--~~~el~d~l~~~~ 286 (286)
T TIGR01019 272 VK--SPSDIGELLAEIL 286 (286)
T ss_pred eC--CHHHHHHHHHHhC
Confidence 65 8999999998763
No 422
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=20.49 E-value=2.3e+02 Score=23.31 Aligned_cols=53 Identities=15% Similarity=0.124 Sum_probs=30.9
Q ss_pred hHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEec
Q psy786 92 SIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVD 147 (176)
Q Consensus 92 ~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vd 147 (176)
...|-+..|...+.+++++ ++.+..+-....+.+ ....-+..+..|+++++||
T Consensus 74 dl~elv~Ya~~KgVgi~lw-~~~~~~~~~~~~~~~--~~~~f~~~~~~Gv~GvKid 126 (273)
T PF10566_consen 74 DLPELVDYAKEKGVGIWLW-YHSETGGNVANLEKQ--LDEAFKLYAKWGVKGVKID 126 (273)
T ss_dssp -HHHHHHHHHHTT-EEEEE-EECCHTTBHHHHHCC--HHHHHHHHHHCTEEEEEEE
T ss_pred CHHHHHHHHHHcCCCEEEE-EeCCcchhhHhHHHH--HHHHHHHHHHcCCCEEeeC
Confidence 3566677888888885444 443432222222222 2455667888999999985
No 423
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=20.21 E-value=2.7e+02 Score=25.01 Aligned_cols=41 Identities=10% Similarity=0.243 Sum_probs=26.3
Q ss_pred cceEEEEECCCccCCch--------HHHHHHHhhhcCCCcEEEEEecCCC
Q psy786 76 SYRTYCLVGDGESAEGS--------IWEALHFASYYKLDNLCVIFDINRL 117 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~--------~~eal~~a~~~~lp~liiV~~nn~~ 117 (176)
+++|.++.-|-...-|. ....+.+|.++++| +++++|..++
T Consensus 314 G~~V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~~lP-lV~lvDs~G~ 362 (512)
T TIGR01117 314 GQSVGIIANQPKVMAGCLDIDSSDKIARFIRFCDAFNIP-IVTFVDVPGF 362 (512)
T ss_pred CEEEEEEEeccccccCCCCHHHHHHHHHHHHHHHHcCCC-EEEEEeCcCc
Confidence 45677777773222221 24456777789999 6777888887
No 424
>KOG0523|consensus
Probab=20.13 E-value=2.4e+02 Score=25.99 Aligned_cols=101 Identities=13% Similarity=0.085 Sum_probs=55.1
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecC-CCccccCcccccccHHHHHHHh
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDIN-RLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn-~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
.++|.|+|-- ++++-++|==+.........+..++-.+.+++.+...+. +.+.++++ +.+..|++ +++
T Consensus 375 v~ia~G~a~~--------g~~~Pf~~tf~~F~trA~dqvr~~a~s~~~v~~v~th~~i~~GeDGPt--h~~iedlA-~fr 443 (632)
T KOG0523|consen 375 VGIANGIACR--------GRTIPFCGTFAAFFTRAFDQVRMGALSQANVIYVATHDSIGLGEDGPT--HQPIEDLA-MFR 443 (632)
T ss_pred HHhhhchhcC--------CCccchhHHHHHHHHHhhhheeehhhccCCcEEEEEeccccccCCCcc--cccHHHHH-HHH
Confidence 3456666642 235566543222222334445555556666454444433 23445544 34456766 455
Q ss_pred hc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 138 AF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 138 a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
+. ++.+.+= .|-.|+..++..|+...+.|.+..
T Consensus 444 siPn~~v~~P--aD~~et~~av~~Aa~~~~~p~i~~ 477 (632)
T KOG0523|consen 444 SIPNMIVFRP--ADGNETENAVATAANTKGTPSIRT 477 (632)
T ss_pred hCCCceEEec--CchHHHHHHHHHHHhcCCCeeEEE
Confidence 55 7777743 266789999999975555576653
No 425
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.03 E-value=1.8e+02 Score=22.23 Aligned_cols=28 Identities=21% Similarity=0.513 Sum_probs=22.5
Q ss_pred HhhcCceEE-EecCCCHHHHHHHHHHHHh
Q psy786 136 LDAFGFNAV-VVDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 136 a~a~G~~~~-~vdG~d~~~l~~al~~a~~ 163 (176)
-+-||++++ -|+|.|.+++.+++++-++
T Consensus 117 ~~rFgfPfI~aVkg~~k~~Il~a~~~Rl~ 145 (176)
T COG3195 117 VERFGFPFIIAVKGNTKDTILAAFERRLD 145 (176)
T ss_pred HHhcCCceEEeecCCCHHHHHHHHHHHhc
Confidence 456799988 5799999999988877664
Done!