Query psy786
Match_columns 176
No_of_seqs 182 out of 1627
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 20:41:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mos_A Transketolase, TK; thia 100.0 1.8E-36 6E-41 269.3 17.3 163 10-175 78-240 (616)
2 3rim_A Transketolase, TK; TPP, 100.0 1.1E-35 3.7E-40 266.6 14.5 165 10-175 88-267 (700)
3 3kom_A Transketolase; rossmann 100.0 1.9E-35 6.5E-40 264.2 13.6 165 10-175 71-247 (663)
4 1r9j_A Transketolase; domains, 100.0 4.2E-35 1.4E-39 262.7 15.3 165 10-175 71-248 (673)
5 3l84_A Transketolase; TKT, str 100.0 3E-35 1E-39 261.6 13.5 164 10-175 70-240 (632)
6 3m49_A Transketolase; alpha-be 100.0 8.5E-35 2.9E-39 260.8 14.9 165 10-175 95-271 (690)
7 3uk1_A Transketolase; structur 100.0 8.9E-35 3.1E-39 261.2 14.0 164 10-175 110-285 (711)
8 2e6k_A Transketolase; structur 100.0 1.9E-34 6.3E-39 257.8 13.9 164 10-175 73-248 (651)
9 1gpu_A Transketolase; transfer 100.0 2.7E-34 9.3E-39 257.7 14.2 165 10-175 72-248 (680)
10 1itz_A Transketolase; calvin c 100.0 3.4E-34 1.2E-38 256.9 14.1 165 10-175 81-259 (675)
11 2r8o_A Transketolase 1, TK 1; 100.0 4.9E-34 1.7E-38 255.7 14.8 165 10-175 69-245 (669)
12 2bfd_A 2-oxoisovalerate dehydr 100.0 6.2E-31 2.1E-35 223.2 14.5 161 13-175 116-285 (400)
13 2qtc_A Pyruvate dehydrogenase 100.0 3.9E-30 1.3E-34 235.4 16.5 166 10-175 145-390 (886)
14 1umd_A E1-alpha, 2-OXO acid de 100.0 5.6E-30 1.9E-34 215.2 13.6 162 12-175 97-267 (367)
15 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 1E-28 3.4E-33 219.8 15.7 157 13-175 83-282 (621)
16 1w85_A Pyruvate dehydrogenase 100.0 4.3E-29 1.5E-33 209.8 12.5 157 12-175 104-265 (368)
17 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 1.3E-28 4.3E-33 219.4 13.4 157 13-175 85-287 (629)
18 1qs0_A 2-oxoisovalerate dehydr 100.0 3.3E-28 1.1E-32 206.7 14.4 161 13-175 135-305 (407)
19 2ozl_A PDHE1-A type I, pyruvat 99.9 4.4E-27 1.5E-31 197.4 13.7 158 12-175 95-261 (365)
20 3ahc_A Phosphoketolase, xylulo 99.9 5.7E-25 1.9E-29 199.1 13.7 161 10-175 120-318 (845)
21 2yic_A 2-oxoglutarate decarbox 99.9 2.4E-23 8.2E-28 190.3 6.8 125 51-175 243-382 (868)
22 2xt6_A 2-oxoglutarate decarbox 99.9 1E-22 3.5E-27 190.0 7.6 170 6-175 423-627 (1113)
23 1v5e_A Pyruvate oxidase; oxido 99.9 3E-22 1E-26 177.1 9.9 117 50-175 410-537 (590)
24 1ozh_A ALS, acetolactate synth 99.9 2.3E-22 7.8E-27 177.0 6.4 117 49-175 416-541 (566)
25 2jgd_A 2-oxoglutarate dehydrog 99.9 1.3E-21 4.6E-26 179.8 11.7 169 6-175 258-454 (933)
26 1t9b_A Acetolactate synthase, 99.9 5E-22 1.7E-26 178.2 8.3 117 49-175 509-635 (677)
27 1q6z_A BFD, BFDC, benzoylforma 99.9 3.9E-22 1.3E-26 174.0 7.4 113 53-175 401-523 (528)
28 2iht_A Carboxyethylarginine sy 99.9 5E-22 1.7E-26 175.0 7.6 116 50-175 433-559 (573)
29 2uz1_A Benzaldehyde lyase; thi 99.8 1.1E-21 3.7E-26 172.5 8.3 118 50-175 416-544 (563)
30 2vbi_A Pyruvate decarboxylase; 99.8 7.2E-22 2.4E-26 173.7 6.9 117 50-175 406-531 (566)
31 4feg_A Pyruvate oxidase; carba 99.8 9.8E-22 3.3E-26 174.2 7.6 117 50-175 417-544 (603)
32 2wvg_A PDC, pyruvate decarboxy 99.8 1.3E-21 4.5E-26 172.1 8.3 118 49-175 409-539 (568)
33 2pgn_A Cyclohexane-1,2-dione h 99.8 4.2E-22 1.4E-26 176.1 5.1 116 50-175 421-545 (589)
34 3eya_A Pyruvate dehydrogenase 99.8 1.4E-21 4.9E-26 171.3 8.4 116 50-175 403-527 (549)
35 1ybh_A Acetolactate synthase, 99.8 1.1E-21 3.6E-26 173.5 7.6 116 50-175 423-556 (590)
36 2vbf_A Branched-chain alpha-ke 99.8 1E-21 3.5E-26 172.9 7.0 118 49-175 421-549 (570)
37 2nxw_A Phenyl-3-pyruvate decar 99.8 1.1E-21 3.9E-26 172.5 7.2 116 50-175 419-540 (565)
38 1ovm_A Indole-3-pyruvate decar 99.8 1.2E-21 4.2E-26 171.6 6.3 117 49-175 404-530 (552)
39 2vk8_A Pyruvate decarboxylase 99.8 7.7E-22 2.6E-26 173.3 4.6 122 49-175 409-540 (563)
40 2pan_A Glyoxylate carboligase; 99.8 2.5E-21 8.7E-26 171.8 7.8 117 50-175 439-578 (616)
41 2c31_A Oxalyl-COA decarboxylas 99.8 1.5E-20 5.2E-25 165.3 9.9 116 49-175 422-545 (568)
42 2q28_A Oxalyl-COA decarboxylas 99.8 2.4E-20 8.2E-25 163.9 8.4 116 49-175 417-542 (564)
43 2x7j_A 2-succinyl-5-enolpyruvy 99.8 8.7E-21 3E-25 168.1 4.9 114 51-175 453-578 (604)
44 3hww_A 2-succinyl-5-enolpyruvy 99.8 3.8E-20 1.3E-24 162.6 7.7 113 51-175 415-537 (556)
45 3lq1_A 2-succinyl-5-enolpyruvy 99.8 1.4E-19 4.6E-24 159.7 6.4 110 54-175 437-558 (578)
46 2c42_A Pyruvate-ferredoxin oxi 99.5 1.3E-14 4.3E-19 137.1 9.8 97 76-175 953-1068(1231)
47 2o1s_A 1-deoxy-D-xylulose-5-ph 96.1 0.041 1.4E-06 48.6 10.7 101 57-172 372-475 (621)
48 2r8o_A Transketolase 1, TK 1; 95.4 0.13 4.5E-06 45.9 11.0 102 58-172 414-517 (669)
49 3mos_A Transketolase, TK; thia 95.4 0.16 5.4E-06 45.0 11.3 101 58-172 367-469 (616)
50 3kom_A Transketolase; rossmann 95.4 0.11 3.7E-06 46.4 10.3 102 58-172 415-518 (663)
51 2e6k_A Transketolase; structur 95.2 0.14 4.6E-06 45.6 10.5 102 58-172 409-512 (651)
52 2ozl_B PDHE1-B, pyruvate dehyd 95.0 0.17 5.8E-06 41.4 9.7 99 57-172 73-182 (341)
53 1yd7_A 2-keto acid:ferredoxin 94.8 0.035 1.2E-06 46.5 5.2 106 56-173 74-185 (395)
54 1qs0_B 2-oxoisovalerate dehydr 94.8 0.096 3.3E-06 42.7 7.8 98 57-171 63-171 (338)
55 1itz_A Transketolase; calvin c 94.7 0.16 5.5E-06 45.4 9.5 102 59-172 427-530 (675)
56 3m49_A Transketolase; alpha-be 94.6 0.28 9.6E-06 44.0 10.7 102 58-172 439-542 (690)
57 2o1x_A 1-deoxy-D-xylulose-5-ph 94.5 0.13 4.5E-06 45.5 8.3 100 57-172 375-477 (629)
58 1gpu_A Transketolase; transfer 94.5 0.19 6.6E-06 44.9 9.5 101 59-172 422-525 (680)
59 3l84_A Transketolase; TKT, str 94.3 0.28 9.4E-06 43.6 10.0 101 58-172 394-496 (632)
60 1r9j_A Transketolase; domains, 94.3 0.37 1.3E-05 43.0 10.8 101 59-172 415-517 (673)
61 1ybh_A Acetolactate synthase, 94.2 0.1 3.5E-06 45.6 7.0 105 57-173 61-169 (590)
62 1w85_B Pyruvate dehydrogenase 94.0 0.27 9.3E-06 39.7 8.7 98 57-171 61-169 (324)
63 1ik6_A Pyruvate dehydrogenase; 93.9 0.38 1.3E-05 39.8 9.6 98 57-171 109-217 (369)
64 1ozh_A ALS, acetolactate synth 93.6 0.22 7.4E-06 43.3 7.9 104 58-173 60-167 (566)
65 2uz1_A Benzaldehyde lyase; thi 93.5 0.24 8E-06 43.0 7.9 104 58-173 53-161 (563)
66 2wvg_A PDC, pyruvate decarboxy 93.4 0.42 1.4E-05 41.4 9.4 106 58-174 53-167 (568)
67 2bfd_B 2-oxoisovalerate dehydr 93.3 0.32 1.1E-05 39.7 8.0 98 57-171 78-187 (342)
68 2iht_A Carboxyethylarginine sy 93.2 0.2 6.9E-06 43.5 7.1 105 58-173 60-168 (573)
69 1umd_B E1-beta, 2-OXO acid deh 93.2 0.6 2.1E-05 37.6 9.4 98 57-171 62-170 (324)
70 1t9b_A Acetolactate synthase, 93.1 0.28 9.6E-06 43.8 8.0 105 58-174 132-240 (677)
71 3eya_A Pyruvate dehydrogenase 93.1 0.25 8.5E-06 42.7 7.4 102 59-173 54-159 (549)
72 2vbi_A Pyruvate decarboxylase; 93.0 0.43 1.5E-05 41.3 8.9 109 57-174 52-167 (566)
73 2nxw_A Phenyl-3-pyruvate decar 92.9 0.26 8.7E-06 42.9 7.2 108 59-174 72-184 (565)
74 2pgn_A Cyclohexane-1,2-dione h 92.9 0.37 1.3E-05 42.0 8.3 103 59-173 56-162 (589)
75 3uk1_A Transketolase; structur 92.9 0.65 2.2E-05 41.8 9.9 100 59-172 461-562 (711)
76 3rim_A Transketolase, TK; TPP, 92.8 0.9 3.1E-05 40.8 10.7 101 59-172 445-549 (700)
77 2pan_A Glyoxylate carboligase; 92.5 0.35 1.2E-05 42.4 7.6 105 58-173 77-185 (616)
78 2q28_A Oxalyl-COA decarboxylas 92.3 0.18 6.2E-06 43.7 5.5 105 59-173 58-166 (564)
79 2c31_A Oxalyl-COA decarboxylas 91.7 0.2 6.7E-06 43.5 5.0 105 59-173 60-168 (568)
80 4feg_A Pyruvate oxidase; carba 91.7 0.19 6.6E-06 44.0 5.0 104 59-173 63-168 (603)
81 2x7j_A 2-succinyl-5-enolpyruvy 91.3 0.38 1.3E-05 42.1 6.5 106 59-174 82-196 (604)
82 2yic_A 2-oxoglutarate decarbox 90.3 2.1 7.2E-05 39.4 10.6 106 57-171 595-707 (868)
83 1v5e_A Pyruvate oxidase; oxido 90.3 0.55 1.9E-05 41.0 6.5 105 56-173 53-161 (590)
84 3lq1_A 2-succinyl-5-enolpyruvy 89.8 0.58 2E-05 40.7 6.3 105 59-173 62-175 (578)
85 2vk8_A Pyruvate decarboxylase 88.9 1.9 6.4E-05 37.2 8.8 107 59-174 55-168 (563)
86 2jgd_A 2-oxoglutarate dehydrog 88.8 2.7 9.2E-05 39.0 10.1 106 56-171 662-775 (933)
87 1ovm_A Indole-3-pyruvate decar 88.8 1.5 5.2E-05 37.7 8.1 107 58-173 55-167 (552)
88 3hww_A 2-succinyl-5-enolpyruvy 88.6 0.38 1.3E-05 41.7 4.1 105 59-173 59-168 (556)
89 2xt6_A 2-oxoglutarate decarbox 88.4 3.3 0.00011 39.1 10.6 107 56-171 839-952 (1113)
90 1q6z_A BFD, BFDC, benzoylforma 86.8 0.54 1.9E-05 40.3 4.0 108 56-174 48-159 (528)
91 2vbf_A Branched-chain alpha-ke 86.7 2.2 7.4E-05 36.9 7.8 109 57-174 74-188 (570)
92 3ibs_A Conserved hypothetical 82.9 12 0.00039 27.4 9.6 92 56-147 91-196 (218)
93 2c42_A Pyruvate-ferredoxin oxi 80.7 5.4 0.00019 38.1 8.3 99 57-171 65-168 (1231)
94 2dko_A Caspase-3; low barrier 75.5 8.8 0.0003 27.3 6.4 56 108-163 18-77 (146)
95 1m72_A Caspase-1; caspase, cys 75.0 7.3 0.00025 30.6 6.4 56 108-163 34-92 (272)
96 1pyo_A Caspase-2; apoptosis, c 73.7 9.1 0.00031 27.9 6.2 57 107-163 34-94 (167)
97 3od5_A Caspase-6; caspase doma 72.9 8.8 0.0003 30.2 6.4 55 108-162 23-81 (278)
98 2l69_A Rossmann 2X3 fold prote 72.6 12 0.00042 24.8 6.0 71 77-163 52-122 (134)
99 2j32_A Caspase-3; Pro-caspase3 72.3 9.6 0.00033 29.5 6.4 56 108-163 18-77 (250)
100 1nw9_B Caspase 9, apoptosis-re 72.1 15 0.00052 28.7 7.6 57 107-163 22-82 (277)
101 2nn3_C Caspase-1; cysteine pro 71.1 10 0.00034 30.5 6.4 56 107-162 61-119 (310)
102 2h54_A Caspase-1; allosteric s 71.0 11 0.00039 27.6 6.2 56 107-162 44-100 (178)
103 3p45_A Caspase-6; protease, hu 70.2 13 0.00044 27.5 6.3 55 108-162 46-104 (179)
104 1qtn_A Caspase-8; apoptosis, d 70.1 12 0.0004 27.2 6.1 56 107-162 24-90 (164)
105 4ehd_A Caspase-3; caspase, apo 69.0 12 0.00041 29.5 6.4 57 107-163 45-105 (277)
106 3sir_A Caspase; hydrolase; 2.6 68.3 10 0.00035 29.5 5.8 55 108-162 22-79 (259)
107 2ql9_A Caspase-7; cysteine pro 67.9 13 0.00043 27.4 5.8 55 108-162 46-104 (173)
108 1f1j_A Caspase-7 protease; cas 65.2 13 0.00043 29.8 5.8 56 108-163 71-130 (305)
109 3h11_B Caspase-8; cell death, 64.0 18 0.0006 28.4 6.4 57 107-163 18-85 (271)
110 4fx5_A VON willebrand factor t 64.0 51 0.0017 27.7 9.7 81 76-170 179-262 (464)
111 2fp3_A Caspase NC; apoptosis, 57.7 26 0.00088 28.1 6.4 55 107-162 62-119 (316)
112 3oes_A GTPase rhebl1; small GT 55.0 49 0.0017 23.4 7.2 34 130-163 150-186 (201)
113 3e4c_A Caspase-1; zymogen, inf 54.3 29 0.00099 27.6 6.2 55 108-162 62-117 (302)
114 1rrk_A Complement factor B; BB 51.6 40 0.0014 27.9 7.0 77 76-163 113-203 (497)
115 3ahc_A Phosphoketolase, xylulo 49.1 80 0.0027 29.0 8.8 103 59-172 503-622 (845)
116 3gxh_A Putative phosphatase (D 48.7 31 0.0011 24.2 5.0 41 132-172 59-103 (157)
117 3ghf_A Septum site-determining 48.1 42 0.0014 22.8 5.4 36 138-173 14-54 (120)
118 1x0u_A Hypothetical methylmalo 47.1 23 0.0008 30.5 4.8 43 76-119 90-140 (522)
119 3hyn_A Putative signal transdu 45.5 24 0.00082 26.3 4.0 36 76-113 80-117 (189)
120 1on3_A Methylmalonyl-COA carbo 44.7 28 0.00097 30.0 5.0 43 76-119 94-144 (523)
121 3pm6_A Putative fructose-bisph 43.1 45 0.0015 26.8 5.6 34 137-173 25-58 (306)
122 1szn_A Alpha-galactosidase; (b 42.9 30 0.001 28.8 4.7 23 152-174 181-203 (417)
123 2f9i_B Acetyl-coenzyme A carbo 42.8 37 0.0013 26.8 5.0 10 153-162 268-277 (285)
124 3ks9_A Mglur1, metabotropic gl 42.2 62 0.0021 27.0 6.7 90 76-169 126-228 (496)
125 2d00_A V-type ATP synthase sub 41.6 76 0.0026 21.1 6.0 33 130-164 12-44 (109)
126 3da8_A Probable 5'-phosphoribo 40.6 77 0.0026 23.8 6.4 70 77-164 14-87 (215)
127 2bzr_A Propionyl-COA carboxyla 39.9 37 0.0013 29.5 4.9 43 76-119 107-157 (548)
128 2kl8_A OR15; structural genomi 39.5 25 0.00086 21.6 2.8 21 145-165 6-26 (85)
129 3iav_A Propionyl-COA carboxyla 38.1 40 0.0014 29.2 4.8 43 76-119 96-146 (530)
130 3h7i_A Ribonuclease H, RNAse H 38.1 62 0.0021 25.9 5.6 42 130-171 110-151 (305)
131 2e4u_A Metabotropic glutamate 38.1 1.4E+02 0.005 25.0 8.5 89 76-168 115-216 (555)
132 4dkx_A RAS-related protein RAB 38.0 1.2E+02 0.004 22.3 7.1 34 129-162 138-174 (216)
133 3av3_A Phosphoribosylglycinami 37.4 1.2E+02 0.004 22.5 7.0 71 77-163 5-79 (212)
134 2q5c_A NTRC family transcripti 36.4 46 0.0016 24.5 4.4 33 130-163 150-182 (196)
135 1n3y_A Integrin alpha-X; alpha 36.1 73 0.0025 22.4 5.5 77 76-161 110-189 (198)
136 1q0p_A Complement factor B; VO 35.9 47 0.0016 23.9 4.5 32 130-163 184-217 (223)
137 3cc1_A BH1870 protein, putativ 35.7 49 0.0017 27.5 5.0 42 132-173 169-217 (433)
138 3qm3_A Fructose-bisphosphate a 35.7 49 0.0017 27.1 4.8 35 137-174 30-64 (357)
139 3tkl_A RAS-related protein RAB 34.9 1.1E+02 0.0038 21.0 7.8 34 130-163 142-178 (196)
140 3sm9_A Mglur3, metabotropic gl 34.7 94 0.0032 25.7 6.6 88 77-168 115-215 (479)
141 1dos_A Aldolase class II; lyas 34.6 53 0.0018 26.9 4.9 35 137-174 27-61 (358)
142 1y7l_A O-acetylserine sulfhydr 34.3 1.4E+02 0.0049 23.1 7.3 43 93-148 73-116 (316)
143 1mkz_A Molybdenum cofactor bio 33.6 1E+02 0.0034 22.0 5.9 35 130-164 31-67 (172)
144 3n6r_B Propionyl-COA carboxyla 33.4 55 0.0019 28.3 5.0 41 76-117 104-152 (531)
145 3q85_A GTP-binding protein REM 33.1 1.1E+02 0.0037 20.4 9.1 35 129-163 129-166 (169)
146 1vrg_A Propionyl-COA carboxyla 32.9 58 0.002 28.1 5.1 43 76-119 97-147 (527)
147 1ml4_A Aspartate transcarbamoy 32.7 1.4E+02 0.0046 23.8 6.9 60 45-106 123-183 (308)
148 4gpa_A Glutamate receptor 4; P 32.7 90 0.0031 24.2 5.9 63 77-146 68-135 (389)
149 3uoa_B Mucosa-associated lymph 32.7 1.5E+02 0.005 24.5 7.3 57 108-164 7-64 (390)
150 1pvv_A Otcase, ornithine carba 32.3 1.7E+02 0.0059 23.3 7.5 57 45-106 124-181 (315)
151 1vlv_A Otcase, ornithine carba 32.2 1.7E+02 0.0058 23.4 7.5 58 45-106 136-194 (325)
152 2is8_A Molybdopterin biosynthe 32.2 1.1E+02 0.0037 21.6 5.8 34 130-163 24-59 (164)
153 1y5e_A Molybdenum cofactor bio 32.1 1.3E+02 0.0046 21.2 7.7 34 130-163 34-69 (169)
154 4hhu_A OR280; engineered prote 32.0 25 0.00084 24.4 2.1 25 140-164 83-107 (170)
155 1duv_G Octase-1, ornithine tra 31.7 1.7E+02 0.0059 23.5 7.5 58 45-106 122-182 (333)
156 2pjk_A 178AA long hypothetical 31.7 1.1E+02 0.0036 22.1 5.7 34 130-163 43-78 (178)
157 1j3l_A Demethylmenaquinone met 31.5 78 0.0027 22.8 4.9 45 107-156 57-103 (164)
158 3iwt_A 178AA long hypothetical 31.4 1.1E+02 0.0037 21.7 5.7 34 130-163 43-78 (178)
159 3kbq_A Protein TA0487; structu 31.3 84 0.0029 22.7 5.1 35 130-164 26-62 (172)
160 2i6u_A Otcase, ornithine carba 31.3 1.6E+02 0.0056 23.3 7.2 58 45-106 117-175 (307)
161 3rag_A Uncharacterized protein 31.1 1.8E+02 0.0061 22.3 8.4 66 76-148 9-76 (242)
162 1z7w_A Cysteine synthase; tran 30.9 1.6E+02 0.0056 22.9 7.2 43 93-148 78-121 (322)
163 2x24_A Acetyl-COA carboxylase; 30.5 52 0.0018 30.0 4.4 43 76-119 120-170 (793)
164 1z0f_A RAB14, member RAS oncog 30.4 1.2E+02 0.0042 20.3 7.9 33 130-162 141-176 (179)
165 1dxh_A Ornithine carbamoyltran 29.8 2.1E+02 0.0072 23.0 7.7 58 45-106 123-182 (335)
166 4ekn_B Aspartate carbamoyltran 29.2 1.3E+02 0.0043 23.9 6.2 60 45-106 119-180 (306)
167 1uas_A Alpha-galactosidase; TI 29.1 78 0.0027 25.4 5.0 46 130-175 113-163 (362)
168 2o3a_A UPF0106 protein AF_0751 28.9 68 0.0023 23.5 4.0 43 129-172 21-63 (178)
169 3c8o_A Regulator of ribonuclea 28.6 77 0.0026 22.7 4.4 45 106-155 57-103 (162)
170 3aon_B V-type sodium ATPase su 28.2 81 0.0028 21.2 4.2 31 131-163 12-42 (115)
171 2pqm_A Cysteine synthase; OASS 28.1 2.2E+02 0.0076 22.4 9.2 41 95-148 91-132 (343)
172 1z08_A RAS-related protein RAB 27.2 1.4E+02 0.0048 19.8 7.8 33 130-162 132-167 (170)
173 2yy8_A ATRM56, UPF0106 protein 27.0 45 0.0015 24.9 2.9 45 129-173 18-62 (201)
174 3t5g_A GTP-binding protein RHE 26.9 1.5E+02 0.0051 20.0 8.2 34 129-162 131-167 (181)
175 3k4i_A Uncharacterized protein 26.7 1.2E+02 0.0042 23.2 5.5 46 106-156 83-130 (244)
176 2efe_B Small GTP-binding prote 26.7 1.5E+02 0.0051 20.0 7.9 33 130-162 138-173 (181)
177 3k8x_A Acetyl-COA carboxylase; 26.5 82 0.0028 28.5 5.0 43 76-119 104-154 (758)
178 2pju_A Propionate catabolism o 26.5 74 0.0025 24.0 4.2 31 131-163 163-193 (225)
179 3dz8_A RAS-related protein RAB 26.1 1.6E+02 0.0056 20.2 7.2 33 130-162 149-184 (191)
180 2hup_A RAS-related protein RAB 26.0 1.7E+02 0.0059 20.5 8.1 41 129-169 154-199 (201)
181 1to3_A Putative aldolase YIHT; 25.8 2.4E+02 0.0082 22.1 8.3 78 93-171 144-227 (304)
182 2y8e_A RAB-protein 6, GH09086P 25.7 1.5E+02 0.0052 19.8 6.8 33 130-162 140-175 (179)
183 2qtc_A Pyruvate dehydrogenase 25.5 2.4E+02 0.0082 25.9 8.0 97 60-168 580-680 (886)
184 4g6u_B EC869 CDII; beta-augmen 25.3 48 0.0016 24.4 2.7 65 104-170 106-170 (177)
185 1x0u_A Hypothetical methylmalo 25.2 1.2E+02 0.004 26.1 5.6 43 76-119 324-374 (522)
186 3h11_A CAsp8 and FADD-like apo 25.0 1.3E+02 0.0044 23.4 5.4 45 108-162 45-89 (272)
187 2fg5_A RAB-22B, RAS-related pr 24.7 1.8E+02 0.006 20.1 6.9 34 129-162 148-184 (192)
188 3o1l_A Formyltetrahydrofolate 24.7 2.6E+02 0.0088 22.0 9.3 70 75-163 105-178 (302)
189 2a9k_A RAS-related protein RAL 24.4 1.7E+02 0.0057 19.7 8.3 34 129-162 143-179 (187)
190 4ep1_A Otcase, ornithine carba 24.3 2.1E+02 0.0073 23.1 6.7 57 45-106 148-205 (340)
191 1uuy_A CNX1, molybdopterin bio 24.3 1.8E+02 0.0061 20.4 5.8 32 132-163 30-68 (167)
192 2g6b_A RAS-related protein RAB 23.9 1.7E+02 0.0058 19.6 7.5 34 130-163 137-173 (180)
193 2pcn_A S-adenosylmethionine:2- 23.8 86 0.0029 22.4 3.9 26 130-155 74-101 (161)
194 2w37_A Ornithine carbamoyltran 23.8 2.2E+02 0.0077 23.1 6.8 58 45-106 145-203 (359)
195 3u9r_B MCC beta, methylcrotony 23.7 94 0.0032 27.0 4.7 43 76-119 120-170 (555)
196 1vi4_A Regulator of ribonuclea 23.7 87 0.003 22.8 3.9 26 130-155 79-106 (174)
197 1pix_A Glutaconyl-COA decarbox 23.5 70 0.0024 28.0 3.9 43 76-119 104-154 (587)
198 1jlj_A Gephyrin; globular alph 23.4 2E+02 0.0067 20.9 5.9 34 130-163 37-75 (189)
199 3hut_A Putative branched-chain 23.4 1.9E+02 0.0064 22.1 6.2 28 78-107 72-99 (358)
200 4e1o_A HDC, histidine decarbox 23.2 2.3E+02 0.0078 23.3 7.0 40 132-171 201-245 (481)
201 3hg3_A Alpha-galactosidase A; 23.2 1.2E+02 0.0041 25.2 5.1 40 133-172 125-170 (404)
202 2gf9_A RAS-related protein RAB 23.1 1.9E+02 0.0063 19.8 8.2 33 130-162 148-183 (189)
203 2x5n_A SPRPN10, 26S proteasome 22.9 1.1E+02 0.0038 22.1 4.5 32 79-110 110-141 (192)
204 1q5x_A Regulator of RNAse E ac 22.8 94 0.0032 22.1 3.9 26 130-155 76-103 (161)
205 3fwz_A Inner membrane protein 22.8 1.7E+02 0.0059 19.4 5.7 11 79-89 9-19 (140)
206 2bme_A RAB4A, RAS-related prot 22.7 1.8E+02 0.0063 19.6 7.9 33 130-162 136-171 (186)
207 3h6g_A Glutamate receptor, ion 22.6 49 0.0017 26.2 2.6 88 77-168 70-167 (395)
208 3q72_A GTP-binding protein RAD 22.5 1.7E+02 0.0059 19.3 8.9 34 130-163 127-163 (166)
209 3ehd_A Uncharacterized conserv 22.5 1.6E+02 0.0056 21.0 5.2 34 78-114 72-106 (162)
210 2i4r_A V-type ATP synthase sub 21.9 1.3E+02 0.0046 19.7 4.3 32 130-163 18-50 (102)
211 2z1d_A Hydrogenase expression/ 21.8 3.3E+02 0.011 22.3 7.3 97 59-163 127-242 (372)
212 3tbh_A O-acetyl serine sulfhyd 21.7 2.9E+02 0.01 21.6 7.2 43 93-148 83-126 (334)
213 3c5c_A RAS-like protein 12; GD 21.7 2E+02 0.0069 19.8 8.2 32 130-161 148-180 (187)
214 1nxj_A Probable S-adenosylmeth 21.6 84 0.0029 23.1 3.5 26 130-155 105-132 (183)
215 3gd5_A Otcase, ornithine carba 21.6 2.6E+02 0.0089 22.3 6.7 29 75-106 155-183 (323)
216 1shu_X Anthrax toxin receptor 21.4 2E+02 0.0069 19.6 7.7 73 76-162 103-178 (182)
217 3csu_A Protein (aspartate carb 21.3 2E+02 0.0068 22.9 5.9 61 44-106 121-183 (310)
218 2fu5_C RAS-related protein RAB 21.2 2E+02 0.0067 19.4 7.3 33 130-162 134-169 (183)
219 1kao_A RAP2A; GTP-binding prot 21.0 1.8E+02 0.0062 19.0 8.2 31 130-160 129-159 (167)
220 1ijb_A VON willebrand factor; 21.0 2.3E+02 0.0078 20.1 7.1 74 76-162 115-192 (202)
221 4djt_A GTP-binding nuclear pro 20.7 2.3E+02 0.0077 19.9 7.5 34 130-163 138-174 (218)
222 3noj_A 4-carboxy-4-hydroxy-2-o 20.6 1.7E+02 0.0059 22.3 5.2 45 107-156 84-130 (238)
223 3gf3_A Glutaconyl-COA decarbox 20.1 1.3E+02 0.0046 26.2 5.0 43 76-119 105-155 (588)
224 3lrk_A Alpha-galactosidase 1; 20.0 1.3E+02 0.0045 25.6 4.8 42 133-174 135-186 (479)
No 1
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=1.8e-36 Score=269.28 Aligned_cols=163 Identities=60% Similarity=0.977 Sum_probs=152.0
Q ss_pred hHHHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccC
Q psy786 10 TNRSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESA 89 (176)
Q Consensus 10 ~~~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~ 89 (176)
+.||++|...|++++|+|.+||++++.++|||++..|+++.++|+||+++|+|+|+|+|.|+++.++++|||++|||+++
T Consensus 78 ~~ly~~~~l~G~~~~~~l~~~r~~~s~l~ghp~~~~~~~d~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~ 157 (616)
T 3mos_A 78 PILYAVWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELS 157 (616)
T ss_dssp HHHHHHHHHTTSSCGGGGGGTTCTTCSCCSSCCTTSTTCSSCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGG
T ss_pred HHHHHHHHHcCCCCHHHHHHhccCCCCCCCCCCCCCCcccccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 46899999999999999999999999999999998899999999999999999999999987666678999999999999
Q ss_pred CchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcE
Q psy786 90 EGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCV 169 (176)
Q Consensus 90 ~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~ 169 (176)
+|++||++++|++++||++++|+|||+|++++++......+++.+++++|||++++|||+|++++.++++++ .++|+
T Consensus 158 eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~---~~~P~ 234 (616)
T 3mos_A 158 EGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA---KHQPT 234 (616)
T ss_dssp SHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBCTTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC---CSSCE
T ss_pred cCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCCcccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc---CCCCE
Confidence 999999999999999999999999999999988777666789999999999999999999999999999765 47999
Q ss_pred EEEeee
Q psy786 170 WIQRGC 175 (176)
Q Consensus 170 lI~~~~ 175 (176)
||++++
T Consensus 235 lI~v~T 240 (616)
T 3mos_A 235 AIIAKT 240 (616)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 999875
No 2
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.1e-35 Score=266.57 Aligned_cols=165 Identities=27% Similarity=0.366 Sum_probs=151.8
Q ss_pred hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhc------------CCC
Q psy786 10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYF------------DKA 75 (176)
Q Consensus 10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~------------~~~ 75 (176)
+.||++|+..|+ ++.|+|.+||++++.++|||++. +|++++++|++|+++|.|+|+|+|.|++ +..
T Consensus 88 ~~lYa~l~l~G~~~~~~~l~~fr~~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~ 167 (700)
T 3rim_A 88 LTLYIQLYLGGFGLELSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPF 167 (700)
T ss_dssp HHHHHHHHHTTSSCCHHHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTT
T ss_pred HHHHHHHHHhCCCCCHHHHHHhhcCCCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCC
Confidence 468999999999 99999999999999999999974 8999999999999999999999999864 245
Q ss_pred cceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEe-cCCCHHHH
Q psy786 76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVV-DGHDVEHL 154 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v-dG~d~~~l 154 (176)
+++|+|++|||++++|++||++++|+.++||++++|+|||+|++++++.... ..++.+++++|||++++| ||+|++++
T Consensus 168 ~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~si~~~~~~~~-~~~~~~~~~a~G~~~~~V~DG~D~~al 246 (700)
T 3rim_A 168 DHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTNIAL-CEDTAARYRAYGWHVQEVEGGENVVGI 246 (700)
T ss_dssp CCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHHTCEEEEEECTTCHHHH
T ss_pred CCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEECCCcccccchhhcc-chhHHHHHHHcCCeEEEECCCCCHHHH
Confidence 7899999999999999999999999999999999999999999998877554 578999999999999999 99999999
Q ss_pred HHHHHHHHhhCCCcEEEEeee
Q psy786 155 VKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 155 ~~al~~a~~~~~~P~lI~~~~ 175 (176)
.+|+++|.+..++|+||++++
T Consensus 247 ~~Al~~A~~~~~~P~lI~~~T 267 (700)
T 3rim_A 247 EEAIANAQAVTDRPSFIALRT 267 (700)
T ss_dssp HHHHHHHHHCCSSCEEEEEEC
T ss_pred HHHHHHHHHcCCCCEEEEEEE
Confidence 999999975468999999875
No 3
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=1.9e-35 Score=264.21 Aligned_cols=165 Identities=27% Similarity=0.364 Sum_probs=145.9
Q ss_pred hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCC----C-----cce
Q psy786 10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDK----A-----SYR 78 (176)
Q Consensus 10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~----~-----~~~ 78 (176)
+.||++|+..|+ ++.|+|.+||++++.++|||++. +|+++.++|+||+++|.|+|+|+|.|+++. + +++
T Consensus 71 ~~lYa~l~l~G~~~~~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~ 150 (663)
T 3kom_A 71 MLLYSLLHLTGYDLSIEDIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHH 150 (663)
T ss_dssp HHHHHHHHHHTCSCCHHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCC
T ss_pred HHHHHHHHHhCCCCCHHHHHhhccCCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCe
Confidence 569999999999 99999999999999999999975 789999999999999999999999985431 1 689
Q ss_pred EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEE-EecCCCHHHHHHH
Q psy786 79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAV-VVDGHDVEHLVKV 157 (176)
Q Consensus 79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~vdG~d~~~l~~a 157 (176)
|+|++|||++++|+++|++++|++++||++++|+|||+|+++++++... .+|+.+++++|||+++ +|||+|++++.+|
T Consensus 151 v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~a 229 (663)
T 3kom_A 151 TYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNISIDGDTKGWF-SDNTPERFRAYGWHVIENVDGHDFVAIEKA 229 (663)
T ss_dssp EEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-----CGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHH
T ss_pred EEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCcccccchhhhc-chhHHHHHHHCCCeEEEEEcCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999998877654 4789999999999999 8999999999999
Q ss_pred HHHHHhhCCCcEEEEeee
Q psy786 158 SSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 158 l~~a~~~~~~P~lI~~~~ 175 (176)
+++|.+..++|+||++++
T Consensus 230 l~~A~~~~~~P~lI~~~T 247 (663)
T 3kom_A 230 INEAHSQQQKPTLICCKT 247 (663)
T ss_dssp HHHHHHCSSSCEEEEEEC
T ss_pred HHHHHhcCCCCEEEEEec
Confidence 999964368999999875
No 4
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=4.2e-35 Score=262.68 Aligned_cols=165 Identities=31% Similarity=0.374 Sum_probs=151.7
Q ss_pred hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcC---------CCcce
Q psy786 10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFD---------KASYR 78 (176)
Q Consensus 10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~---------~~~~~ 78 (176)
+.||++|+..|+ ++.|+|.+||++++.++|||++. +|++..++|+||+++|.|+|+|+|.|+++ ..+++
T Consensus 71 ~~lYa~l~l~G~~~~~~~l~~~r~~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~ 150 (673)
T 1r9j_A 71 ALQYALLHMAGYNLTMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHY 150 (673)
T ss_dssp HHHHHHHHHHTCSCCHHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCC
T ss_pred HHHHHHHHHcCCCCCHHHHHhhccCCCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCE
Confidence 469999999999 99999999999999999999985 78999999999999999999999988542 14789
Q ss_pred EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEE-EecC-CCHHHHHH
Q psy786 79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAV-VVDG-HDVEHLVK 156 (176)
Q Consensus 79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~vdG-~d~~~l~~ 156 (176)
|+|++|||++++|++||++++|++++||++++|+|||+|++++++.... ..|+.+++++|||+++ +||| +|++++.+
T Consensus 151 v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~ 229 (673)
T 1r9j_A 151 TYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDGSTSLSF-TEQCHQKYVAMGFHVIEVKNGDTDYEGLRK 229 (673)
T ss_dssp EEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHHTTCEEEEESCTTTCHHHHHH
T ss_pred EEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCCccccchhhcc-CHhHHHHHHHCCCeEEEEeCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999998887665 5789999999999999 8999 99999999
Q ss_pred HHHHHHhhCCCcEEEEeee
Q psy786 157 VSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 157 al~~a~~~~~~P~lI~~~~ 175 (176)
|+++|.+..++|++|++++
T Consensus 230 Al~~A~~~~~~P~lI~~~T 248 (673)
T 1r9j_A 230 ALAEAKATKGKPKMIVQTT 248 (673)
T ss_dssp HHHHHHHCCSSCEEEEEEC
T ss_pred HHHHHHHcCCCCEEEEEec
Confidence 9999975468999999875
No 5
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=3e-35 Score=261.63 Aligned_cols=164 Identities=30% Similarity=0.466 Sum_probs=150.7
Q ss_pred hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcC------CCcceEEEE
Q psy786 10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFD------KASYRTYCL 82 (176)
Q Consensus 10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~------~~~~~vv~~ 82 (176)
+.+|++|+..|+ ++.|+|.+||++++.++|||++.+|+++.++|+||+++|.|+|+|+|.++++ ..+++|||+
T Consensus 70 ~~lYa~l~l~G~~~~~~~l~~~r~~~s~~~ghp~~~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v 149 (632)
T 3l84_A 70 ALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCL 149 (632)
T ss_dssp HHHHHHHHHHTCSCCHHHHTTTTCTTCSSCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEE
T ss_pred HHHHHHHHHhCCCCCHHHHHHHhcCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEE
Confidence 568999999999 9999999999999999999998889999999999999999999999998542 236889999
Q ss_pred ECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHH
Q psy786 83 VGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKL 162 (176)
Q Consensus 83 ~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~ 162 (176)
+|||++++|+++|++++|++++||++++|+|||+|+++++++... .+|+.+++++|||++++|||+|++++.+|+++|.
T Consensus 150 ~GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A~ 228 (632)
T 3l84_A 150 CGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEGDVGLAF-NENVKMRFEAQGFEVLSINGHDYEEINKALEQAK 228 (632)
T ss_dssp EEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHHH
T ss_pred ECCcchhhccHHHHHHHHHHcCCCcEEEEEECCCcccccchhhhc-ChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998776554 4789999999999999999999999999999996
Q ss_pred hhCCCcEEEEeee
Q psy786 163 QKAIGCVWIQRGC 175 (176)
Q Consensus 163 ~~~~~P~lI~~~~ 175 (176)
..++|+||++++
T Consensus 229 -~~~~P~lI~v~T 240 (632)
T 3l84_A 229 -KSTKPCLIIAKT 240 (632)
T ss_dssp -TCSSCEEEEEEC
T ss_pred -hCCCCEEEEEee
Confidence 478999999875
No 6
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=8.5e-35 Score=260.75 Aligned_cols=165 Identities=28% Similarity=0.403 Sum_probs=150.2
Q ss_pred hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCC-CCCccccCCcccchhHHHHHHHHHhchhcCC---------Ccce
Q psy786 10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTP-RLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK---------ASYR 78 (176)
Q Consensus 10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~-~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~---------~~~~ 78 (176)
+.||++|+..|+ +|.|+|.+||++++.++|||++ .+|++++++|+||+++|.|+|+|+|.|+++. .+++
T Consensus 95 ~~lYa~l~l~G~~~~~~~l~~~rq~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~ 174 (690)
T 3m49_A 95 MLLYSLLHLSGYDVTMDDLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHY 174 (690)
T ss_dssp HHHHHHHHHTTSSCCHHHHTTTTCTTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCC
T ss_pred HHHHHHHHHHCCCCCHHHHHhhccCCCCCCCCCCCCCCCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCe
Confidence 458999999999 9999999999999999999997 4899999999999999999999999985421 2688
Q ss_pred EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEe-cCCCHHHHHHH
Q psy786 79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVV-DGHDVEHLVKV 157 (176)
Q Consensus 79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v-dG~d~~~l~~a 157 (176)
|+|++|||++++|+++|++++|++++||++++|+|||+|+++++++... .+|+.+++++|||++++| ||+|++++.+|
T Consensus 175 v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~v~DG~d~~~l~~A 253 (690)
T 3m49_A 175 TYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSF-SESVEDRYKAYGWQVIRVEDGNDIEAIAKA 253 (690)
T ss_dssp EEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHHHTCEEEEESCTTCHHHHHHH
T ss_pred EEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCeecccchhhcc-chhHHHHHHHcCCcEEEEecCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999998876554 478999999999999999 99999999999
Q ss_pred HHHHHhhCCCcEEEEeee
Q psy786 158 SSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 158 l~~a~~~~~~P~lI~~~~ 175 (176)
+++|.+..++|+||++++
T Consensus 254 l~~a~~~~~~P~lI~v~T 271 (690)
T 3m49_A 254 IEEAKADEKRPTLIEVRT 271 (690)
T ss_dssp HHHHHHCCSSCEEEEEEC
T ss_pred HHHHHhcCCCCEEEEEEe
Confidence 999964368999999875
No 7
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=8.9e-35 Score=261.19 Aligned_cols=164 Identities=29% Similarity=0.396 Sum_probs=149.7
Q ss_pred hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCC---------Ccce
Q psy786 10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDK---------ASYR 78 (176)
Q Consensus 10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~---------~~~~ 78 (176)
+.||++|+..|+ ++.|+|.+||++++.++|||+.. +|+++.++|+||+++|.|+|+|+|.|+++. .+++
T Consensus 110 ~~lYa~l~l~G~~~~~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~ 189 (711)
T 3uk1_A 110 MLLYSLLHLTGYDLPIEELKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHH 189 (711)
T ss_dssp HHHHHHHHHHTCSCCHHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCC
T ss_pred HHHHHHHHHhCCCCCHHHHHhhccccCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCe
Confidence 569999999999 99999999999999999999875 689999999999999999999999985421 1679
Q ss_pred EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEE-ecCCCHHHHHHH
Q psy786 79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVV-VDGHDVEHLVKV 157 (176)
Q Consensus 79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~-vdG~d~~~l~~a 157 (176)
|||++|||++++|+++|++++|++++||++++|+|||+|+++++++... .+|+.+++++|||++++ |||+|++++.+|
T Consensus 190 vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~A 268 (711)
T 3uk1_A 190 TYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWF-HDDTPKRFEAYGWNVIPNVNGHDVDAIDAA 268 (711)
T ss_dssp EEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHH
T ss_pred EEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCcccccchhhhc-CCCHHHHHHHcCCcEEEEeCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999998776654 47899999999999998 899999999999
Q ss_pred HHHHHhhCCCcEEEEeee
Q psy786 158 SSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 158 l~~a~~~~~~P~lI~~~~ 175 (176)
+++|. ..++|+||++++
T Consensus 269 l~~A~-~~~~P~lI~v~T 285 (711)
T 3uk1_A 269 IAKAK-RSDKPSLICCKT 285 (711)
T ss_dssp HHHHT-TCSSCEEEEEEC
T ss_pred HHHHH-hCCCCEEEEEcc
Confidence 99996 468999999875
No 8
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=1.9e-34 Score=257.78 Aligned_cols=164 Identities=32% Similarity=0.414 Sum_probs=150.0
Q ss_pred hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcC---------CCcce
Q psy786 10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFD---------KASYR 78 (176)
Q Consensus 10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~---------~~~~~ 78 (176)
+.||++|+..|+ +|+|+|.+||++++.++|||++. +|++.+++|+||+++|.|+|+|+|.++++ ..+++
T Consensus 73 ~~lYa~l~l~G~~~~~~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~ 152 (651)
T 2e6k_A 73 MLLYAVLHLTGYDLPLEELKSFRQWGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHY 152 (651)
T ss_dssp HHHHHHHHHTTCSCCHHHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCC
T ss_pred HHHHHHHHHhCCCCCHHHHHHhhccCCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCE
Confidence 458999999999 99999999999999889999965 68999999999999999999999987532 14789
Q ss_pred EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEE-EecCCCHHHHHHH
Q psy786 79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAV-VVDGHDVEHLVKV 157 (176)
Q Consensus 79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~vdG~d~~~l~~a 157 (176)
|||++|||++++|+++|++++|++++||++++|+|||+|++++++.... ..|+.+++++|||+++ +|||+|++++.++
T Consensus 153 v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~a 231 (651)
T 2e6k_A 153 TYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRISIDGPTDLAF-TEDVLARYRAYGWQTLRVEDVNDLEALRKA 231 (651)
T ss_dssp EEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECCEETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTCHHHHHHH
T ss_pred EEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCCccccccccccc-CccHHHHHHhCCCeEEEEeCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999998876655 5789999999999999 9999999999999
Q ss_pred HHHHHhhCCCcEEEEeee
Q psy786 158 SSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 158 l~~a~~~~~~P~lI~~~~ 175 (176)
+++|++ .++|+||++++
T Consensus 232 l~~a~~-~~~P~lI~~~t 248 (651)
T 2e6k_A 232 IKLAKL-DERPTLIAVRS 248 (651)
T ss_dssp HHHHHH-SSSCEEEEEEC
T ss_pred HHHHHH-CCCCEEEEEEe
Confidence 999975 78999999875
No 9
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=2.7e-34 Score=257.71 Aligned_cols=165 Identities=31% Similarity=0.420 Sum_probs=150.4
Q ss_pred hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcC----C-----CcceE
Q psy786 10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFD----K-----ASYRT 79 (176)
Q Consensus 10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~----~-----~~~~v 79 (176)
+.||++|+..|+ ++.|+|.+||++++.++|||++..|++..++|+||+++|.|+|+|+|.++++ + .+++|
T Consensus 72 ~~lYa~~~l~G~~~~~~~l~~~r~~g~~~~ghp~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v 151 (680)
T 1gpu_A 72 ALLYSMLHLTGYDLSIEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYT 151 (680)
T ss_dssp HHHHHHHHHTTCSCCHHHHTTTTCTTCSCCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCE
T ss_pred HHHHHHHHHhCCCCCHHHHHhhcccCCCCCCCCCccCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeE
Confidence 568999999999 9999999999999988999998778999999999999999999999988542 1 26799
Q ss_pred EEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEE-EecCC-CHHHHHHH
Q psy786 80 YCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAV-VVDGH-DVEHLVKV 157 (176)
Q Consensus 80 v~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~vdG~-d~~~l~~a 157 (176)
||++|||++++|++||++++|++++||++++|+|||+|++++++.... .+++.+++++|||+++ +|||+ |++++.++
T Consensus 152 v~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~a 230 (680)
T 1gpu_A 152 YVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISF-DEDVAKRYEAYGWEVLYVENGNEDLAGIAKA 230 (680)
T ss_dssp EEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHHTCEEEEESCTTTCHHHHHHH
T ss_pred EEEECCCccchhhHHHHHHHHHHhCCCcEEEEEECCCceEeccccccc-CccHHHHHHhcCCeEEEEecCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999998776554 4689999999999999 99999 99999999
Q ss_pred HHHHHhhCCCcEEEEeee
Q psy786 158 SSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 158 l~~a~~~~~~P~lI~~~~ 175 (176)
+++|++..++|+||++++
T Consensus 231 l~~A~~~~~~P~lI~~~T 248 (680)
T 1gpu_A 231 IAQAKLSKDKPTLIKMTT 248 (680)
T ss_dssp HHHHHHCTTSCEEEEEEC
T ss_pred HHHHHHCCCCCEEEEEEe
Confidence 999975468999999875
No 10
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=3.4e-34 Score=256.93 Aligned_cols=165 Identities=26% Similarity=0.344 Sum_probs=150.3
Q ss_pred hHHHHHHHHcCC--CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcC---------CCcc
Q psy786 10 TNRSKAWAEAGL--FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFD---------KASY 77 (176)
Q Consensus 10 ~~~ya~l~~~G~--~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~---------~~~~ 77 (176)
+.||++|+..|+ +|.|+|.+||++++.++|||++. +|++.+++|+||+++|.|+|+|+|.++++ .+++
T Consensus 81 ~~lYa~l~l~G~~~~~~~~l~~~r~~~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~ 160 (675)
T 1itz_A 81 MLQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDH 160 (675)
T ss_dssp HHHHHHHHHHTCTTCCHHHHTTTTSTTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCC
T ss_pred HHHHHHHHHcCCCCCCHHHHHhcccCCCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCC
Confidence 458999999999 99999999999999889999975 78999999999999999999999987532 1578
Q ss_pred eEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEE-EecCC-CHHHHH
Q psy786 78 RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAV-VVDGH-DVEHLV 155 (176)
Q Consensus 78 ~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~vdG~-d~~~l~ 155 (176)
+|||++|||++++|++||++++|++++||++++|+|||+|++++++.... ..|+.+++++|||+++ +|||+ |++++.
T Consensus 161 ~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~ 239 (675)
T 1itz_A 161 YTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAF-TEDVSTRFEALGWHTIWVKNGNTGYDDIR 239 (675)
T ss_dssp CEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTTCHHHHH
T ss_pred EEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCCChhhhc-ChhHHHHHHhCCCEEEEEecCCCCHHHHH
Confidence 99999999999999999999999999999999999999999998776654 6789999999999999 89999 999999
Q ss_pred HHHHHHHhhCCCcEEEEeee
Q psy786 156 KVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 156 ~al~~a~~~~~~P~lI~~~~ 175 (176)
+|+++|++..++|+||++++
T Consensus 240 ~al~~a~~~~~~P~lI~~~T 259 (675)
T 1itz_A 240 AAIKEAKAVTDKPTLIKVTT 259 (675)
T ss_dssp HHHHHHHHCCSSCEEEEEEC
T ss_pred HHHHHHHHCCCCeEEEEEee
Confidence 99999975468999999875
No 11
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=4.9e-34 Score=255.72 Aligned_cols=165 Identities=27% Similarity=0.370 Sum_probs=149.4
Q ss_pred hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcC----C-----Ccce
Q psy786 10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFD----K-----ASYR 78 (176)
Q Consensus 10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~----~-----~~~~ 78 (176)
+.||++++..|+ ++.|+|.+||++++.++|||++. +|++..++|+||+++|.|+|+|+|.++++ . .+++
T Consensus 69 ~~lYa~~~l~G~~~~~~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~ 148 (669)
T 2r8o_A 69 MLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHY 148 (669)
T ss_dssp HHHHHHHHHHTCSCCHHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCC
T ss_pred HHHHHHHHHcCCCCCHHHHHHhhcCCCCCCCCCCccCCCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCe
Confidence 458999999999 99999999999999889999864 78999999999999999999999987532 1 3679
Q ss_pred EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEE-EecCCCHHHHHHH
Q psy786 79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAV-VVDGHDVEHLVKV 157 (176)
Q Consensus 79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~vdG~d~~~l~~a 157 (176)
|||++|||++++|++||++++|++++||++++|+|||+|++++++.... ..++.+++++|||+++ +|||+|++++.++
T Consensus 149 v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~a 227 (669)
T 2r8o_A 149 TYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYGWHVIRDIDGHDAASIKRA 227 (669)
T ss_dssp EEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHH
T ss_pred EEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCCcEecccccccc-CccHHHHHHHCCCeEEeEECCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999998776544 4689999999999999 9999999999999
Q ss_pred HHHHHhhCCCcEEEEeee
Q psy786 158 SSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 158 l~~a~~~~~~P~lI~~~~ 175 (176)
+++|++..++|+||++++
T Consensus 228 l~~a~~~~~~P~lI~~~T 245 (669)
T 2r8o_A 228 VEEARAVTDKPSLLMCKT 245 (669)
T ss_dssp HHHHHHCCSSCEEEEEEC
T ss_pred HHHHHhcCCCCEEEEEEe
Confidence 999975468999999875
No 12
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.97 E-value=6.2e-31 Score=223.18 Aligned_cols=161 Identities=18% Similarity=0.172 Sum_probs=137.5
Q ss_pred HHHHHHcCCCCHHHHhhhhhc------CCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCC
Q psy786 13 SKAWAEAGLFPVSELKNLRKI------DSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDG 86 (176)
Q Consensus 13 ya~l~~~G~~~~e~l~~~r~~------~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG 86 (176)
+.+++.+|+.+.+.|..|+.. |+.+++|+......+...+|+||+++|.|+|+|+|.++. +.+++|||++|||
T Consensus 116 ~~~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~AvG~AlA~~~~-~~~~~vv~~~GDG 194 (400)
T 2bfd_A 116 AGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRA-NANRVVICYFGEG 194 (400)
T ss_dssp HHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHHHH-TCCCCEEEEEETT
T ss_pred HHHHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccccCccccCccccccccHHHHHHHhhhhh-CCCCeEEEEECch
Confidence 467888999888888888764 456777765432235567899999999999999999864 4578999999999
Q ss_pred ccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh--
Q psy786 87 ESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK-- 164 (176)
Q Consensus 87 ~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~-- 164 (176)
++++|.++|+|++|++++|| +++|++||+|++++++....+.+++.+++++|||++++|||+|++++.+++++|+++
T Consensus 195 a~~~G~~~Eal~~A~~~~lp-vi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar 273 (400)
T 2bfd_A 195 AASEGDAHAGFNFAATLECP-IIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAV 273 (400)
T ss_dssp GGGSHHHHHHHHHHHHTTCC-EEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred hhhcChHHHHHHHHHHHCcC-EEEEEECCceeeeecccccCCCCCHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 777888899999988776666678999999999999999999999999999999862
Q ss_pred -CCCcEEEEeee
Q psy786 165 -AIGCVWIQRGC 175 (176)
Q Consensus 165 -~~~P~lI~~~~ 175 (176)
.++|+|||++|
T Consensus 274 ~~~~P~lIe~~t 285 (400)
T 2bfd_A 274 AENQPFLIEAMT 285 (400)
T ss_dssp HHTCCEEEEEEC
T ss_pred hCCCCEEEEEEe
Confidence 57999999876
No 13
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=99.97 E-value=3.9e-30 Score=235.36 Aligned_cols=166 Identities=23% Similarity=0.250 Sum_probs=148.5
Q ss_pred hHHHHHHHHcCCCCHHHHhhhhhc--CCCCCCCCCCC-CCc-cccCCcccchhHHHHHHHHHhchhc------CCCcceE
Q psy786 10 TNRSKAWAEAGLFPVSELKNLRKI--DSDLEGHPTPR-LNF-IDVGTGSLGQGLSVAAGMAYVGKYF------DKASYRT 79 (176)
Q Consensus 10 ~~~ya~l~~~G~~~~e~l~~~r~~--~~~l~~~~~~~-~~~-~~~~~g~~G~~l~~AvG~A~a~~~~------~~~~~~v 79 (176)
+.+|+.++..|+++.|+|.+||+. +.++++||+|. .|+ +.+++|+||++++.|+|+|++++++ ++.+++|
T Consensus 145 p~~Ya~~~l~Gr~~~e~l~~fRq~~~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v 224 (886)
T 2qtc_A 145 PGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTV 224 (886)
T ss_dssp HHHHHHHHHTTSSCHHHHTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCE
T ss_pred HHHHHHHHHhCCCCHHHHHhccCCCCCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhcccccccCCCCEE
Confidence 458999999999999999999997 45899999986 675 8899999999999999999999863 4567899
Q ss_pred EEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc-cccHHHHHHHhhcCceEEEe------------
Q psy786 80 YCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ-HQTEVYRKRLDAFGFNAVVV------------ 146 (176)
Q Consensus 80 v~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~~v------------ 146 (176)
||++|||++++|++||++++|++++|+++++|+|||.+++++++... ....++.++++++||++++|
T Consensus 225 ~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~ 304 (886)
T 2qtc_A 225 YAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRK 304 (886)
T ss_dssp EEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHH
T ss_pred EEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcccCCCccccccccHHHHHHHHhCCCCEEEEecchhHHHHHcc
Confidence 99999999999999999999999999999999999999999887653 23578999999999999988
Q ss_pred ---------------------------------------------------------cCCCHHHHHHHHHHHHhhCCCcE
Q psy786 147 ---------------------------------------------------------DGHDVEHLVKVSSFKLQKAIGCV 169 (176)
Q Consensus 147 ---------------------------------------------------------dG~d~~~l~~al~~a~~~~~~P~ 169 (176)
||||++++.+|+++|.+...+|+
T Consensus 305 ~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~~~~~Pt 384 (886)
T 2qtc_A 305 DTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQETKGKAT 384 (886)
T ss_dssp CSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHHCCSSCE
T ss_pred CCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHHHcCCCCE
Confidence 69999999999999975556999
Q ss_pred EEEeee
Q psy786 170 WIQRGC 175 (176)
Q Consensus 170 lI~~~~ 175 (176)
+|++++
T Consensus 385 lI~~~T 390 (886)
T 2qtc_A 385 VILAHT 390 (886)
T ss_dssp EEEEEC
T ss_pred EEEEee
Confidence 999875
No 14
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.97 E-value=5.6e-30 Score=215.22 Aligned_cols=162 Identities=19% Similarity=0.199 Sum_probs=138.3
Q ss_pred HHHHHHHcCCCCHHHHhhhhh------cCCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECC
Q psy786 12 RSKAWAEAGLFPVSELKNLRK------IDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGD 85 (176)
Q Consensus 12 ~ya~l~~~G~~~~e~l~~~r~------~~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GD 85 (176)
.|++++.+|+.+.+.|..|++ .|+.+++|+......+...+|++|+++|.|+|+|++.|+ .+++++|||++||
T Consensus 97 ~~~~~~~~G~~~~~~l~~~~g~~~g~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~-~~~~~~vv~i~GD 175 (367)
T 1umd_A 97 DHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKL-LRTGQVAVCTFGD 175 (367)
T ss_dssp THHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHH-TTCCCCEEEEEET
T ss_pred HHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHHHHH-hCCCCeEEEEEcc
Confidence 699999999988999999987 456677786432233445789999999999999999885 4567899999999
Q ss_pred CccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh-
Q psy786 86 GESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK- 164 (176)
Q Consensus 86 G~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~- 164 (176)
|++++|.++|+|++|+++++| +++|++||+|+++++.....+.+++.+++++||+++++|||+|+.++.+++++|+++
T Consensus 176 Ga~~~G~~~Eal~~A~~~~lp-vi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a 254 (367)
T 1umd_A 176 GATSEGDWYAGINFAAVQGAP-AVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERA 254 (367)
T ss_dssp GGGGSHHHHHHHHHHHHTTCS-EEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHH
T ss_pred cccccCcHHHHHHHHHHhCcC-EEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999899999999999999 777788888999887655555678999999999999999999999999999888762
Q ss_pred --CCCcEEEEeee
Q psy786 165 --AIGCVWIQRGC 175 (176)
Q Consensus 165 --~~~P~lI~~~~ 175 (176)
.++|+|||+.|
T Consensus 255 ~~~~gP~lIe~~t 267 (367)
T 1umd_A 255 RRGEGPSLVELRV 267 (367)
T ss_dssp HTTCCCEEEEEEC
T ss_pred HhcCCCEEEEEEe
Confidence 47999999876
No 15
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=99.96 E-value=1e-28 Score=219.80 Aligned_cols=157 Identities=24% Similarity=0.330 Sum_probs=126.6
Q ss_pred HHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCc
Q psy786 13 SKAWAEAGLFPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEG 91 (176)
Q Consensus 13 ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G 91 (176)
|+.++.+|+ .+++.++|++++ +.|||++. .++..+++|+||+++|+|+|+|+|.++ .+++++|||++|||++++|
T Consensus 83 y~~~~l~G~--~~~~~~~r~~~g-~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~-~~~~~~Vv~v~GDG~~~~G 158 (621)
T 2o1s_A 83 YPHKILTGR--RDKIGTIRQKGG-LHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEK-EGKNRRTVCVIGDGAITAG 158 (621)
T ss_dssp HHHHHTTTT--GGGGGGTTSTTS-CCSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHH-HTSCCCEEEEEETTGGGSH
T ss_pred HHHHHHhCC--HhhhhcccccCC-CCCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHH-hCCCCeEEEEEchhhhhcc
Confidence 999999997 688889999985 78999875 466667899999999999999999885 4567899999999999999
Q ss_pred hHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccc----------------------------------cHHH-----
Q psy786 92 SIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQ----------------------------------TEVY----- 132 (176)
Q Consensus 92 ~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~----------------------------------~~~~----- 132 (176)
+++|+|++|+++++| +++|+|||+|+++++++.... ..++
T Consensus 159 ~~~EaL~~A~~~~~p-li~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~ 237 (621)
T 2o1s_A 159 MAFEAMNHAGDIRPD-MLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMV 237 (621)
T ss_dssp HHHHHHHHHHHHCCS-EEEEEEECC-------------------------------------------------------
T ss_pred HHHHHHHHHHhhCCC-EEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHHHHHHHHHHHhhhcc
Confidence 999999999999998 678899999999876542110 0122
Q ss_pred --HHHHhhcCceEE-EecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 133 --RKRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 133 --~~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.+++++|||+++ +|||+|++++.+++++|+ ..++|++|++++
T Consensus 238 ~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~-~~~gP~lI~v~t 282 (621)
T 2o1s_A 238 VPGTLFEELGFNYIGPVDGHDVLGLITTLKNMR-DLKGPQFLHIMT 282 (621)
T ss_dssp -CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHH-HSCSEEEEEEEC
T ss_pred ChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHH-HcCCCEEEEEEE
Confidence 578999999999 999999999999999997 468999999875
No 16
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.96 E-value=4.3e-29 Score=209.84 Aligned_cols=157 Identities=20% Similarity=0.185 Sum_probs=129.7
Q ss_pred HHHHHHHcCCCCHHHHhhhhhc--CCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccC
Q psy786 12 RSKAWAEAGLFPVSELKNLRKI--DSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESA 89 (176)
Q Consensus 12 ~ya~l~~~G~~~~e~l~~~r~~--~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~ 89 (176)
.+.++...|..+.+.+..+... |+ ..|++ .++..++|+||+++|+|+|+|+|.++ .+++++|||++|||+++
T Consensus 104 ~~~~~~~~G~~~~~~~~el~G~~~G~--~~h~~---~~~~~~~g~lG~~lp~AvG~A~A~~~-~~~~~~vv~i~GDGa~~ 177 (368)
T 1w85_A 104 DVPQIIWHGLPLYQAFLFSRGHFHGN--QIPEG---VNVLPPQIIIGAQYIQAAGVALGLKM-RGKKAVAITYTGDGGTS 177 (368)
T ss_dssp CHHHHHHTTCCHHHHHHHHHTCGGGG--CCCTT---CCBCCCCCSTTHHHHHHHHHHHHHHH-TTCSCCEEEEEETGGGG
T ss_pred hHHHHHhcCCCHHHHHHHHCCCCCCC--CCCcc---cccCCCccccCccccHHHHHHHHhHh-hCCCCeEEEEEchhhhh
Confidence 4667788897666666565432 32 22322 24556789999999999999999985 45678999999999999
Q ss_pred CchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh---CC
Q psy786 90 EGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK---AI 166 (176)
Q Consensus 90 ~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~---~~ 166 (176)
+|.++|+|++|++++|| +++|++||+|+++++.....+.+++.+++++|||++++|||+|++++.+++++|+++ .+
T Consensus 178 ~G~~~Eal~~A~~~~lp-vi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~ 256 (368)
T 1w85_A 178 QGDFYEGINFAGAFKAP-AIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGE 256 (368)
T ss_dssp SHHHHHHHHHHHHTTCC-EEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTS
T ss_pred hcHHHHHHHHHHHHCcC-EEEEEEcCCccceeccccccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999 777888889999887666666678999999999999999999999999999999862 47
Q ss_pred CcEEEEeee
Q psy786 167 GCVWIQRGC 175 (176)
Q Consensus 167 ~P~lI~~~~ 175 (176)
+|+|||+.|
T Consensus 257 gP~lIe~~t 265 (368)
T 1w85_A 257 GPTLIETLC 265 (368)
T ss_dssp CCEEEEEEC
T ss_pred CCEEEEEEe
Confidence 999999976
No 17
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=99.96 E-value=1.3e-28 Score=219.44 Aligned_cols=157 Identities=18% Similarity=0.237 Sum_probs=132.1
Q ss_pred HHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCc
Q psy786 13 SKAWAEAGLFPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEG 91 (176)
Q Consensus 13 ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G 91 (176)
|+.+...|+ .+++..+|++++ +.|||++. .++..+++|+||+++|+|+|+|+|.++ .+++++|||++|||++++|
T Consensus 85 y~~~~l~G~--~~~~~~~r~~~g-~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~AlA~k~-~~~~~~Vv~v~GDG~~~~G 160 (629)
T 2o1x_A 85 YAHKILTGR--RDQMADIKKEGG-ISGFTKVSESEHDAITVGHASTSLTNALGMALARDA-QGKDFHVAAVIGDGSLTGG 160 (629)
T ss_dssp HHHHHTTTT--GGGGGGTTSTTS-CCSSCCGGGCTTCCSCCSSSSCHHHHHHHHHHHHHH-HTCCCCEEEEEETTGGGSH
T ss_pred HHHHHHhCc--HhHHhCcccCCC-CCCCCCCCCCCCCCcCCCcccccHhHHHHHHHHHHH-hCCCCeEEEEEchhhhhcc
Confidence 888999997 577889999985 68998864 566778999999999999999999875 4567899999999999999
Q ss_pred hHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccc--------------------------c---------HHH----
Q psy786 92 SIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQ--------------------------T---------EVY---- 132 (176)
Q Consensus 92 ~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~--------------------------~---------~~~---- 132 (176)
+++|+|++|+++++| +++|+|||+|+++++++.... . .++
T Consensus 161 ~~~EaL~~A~~~~~p-li~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~ 239 (629)
T 2o1x_A 161 MALAALNTIGDMGRK-MLIVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHF 239 (629)
T ss_dssp HHHHHHHHHHHHCCS-EEEEEEECSBSSSBCCSSHHHHC-----------------------------------------
T ss_pred HHHHHHHHHHhhCCC-EEEEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhh
Confidence 999999999999999 678899999999876542100 0 132
Q ss_pred ---H--HHHhhcCceEE-EecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 133 ---R--KRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 133 ---~--~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
. +++++|||+++ +|||+|++++.+++++|+ ..++|++|++++
T Consensus 240 ~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~-~~~~P~lI~v~t 287 (629)
T 2o1x_A 240 FDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLV-DLDGPTILHIVT 287 (629)
T ss_dssp ----CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHT-TSSSEEEEEEEC
T ss_pred cCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHH-hcCCCEEEEEEE
Confidence 3 78999999999 999999999999999996 468999999875
No 18
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.95 E-value=3.3e-28 Score=206.65 Aligned_cols=161 Identities=19% Similarity=0.188 Sum_probs=127.1
Q ss_pred HHHHHHcCCCCHHHHhhhhhc------CCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCC
Q psy786 13 SKAWAEAGLFPVSELKNLRKI------DSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDG 86 (176)
Q Consensus 13 ya~l~~~G~~~~e~l~~~r~~------~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG 86 (176)
+..++..|+.+.+.|..+... |...+.|......++...+|+||+++|+|+|+|+|.++ .+++++|||++|||
T Consensus 135 ~~~~l~~g~~~~~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~-~~~~~~vv~i~GDG 213 (407)
T 1qs0_A 135 QSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAI-KGDTKIASAWIGDG 213 (407)
T ss_dssp HHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHH-TTCCCCEEEEEETG
T ss_pred hHHHHhcCCCHHHHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHH-hCCCCEEEEEECCc
Confidence 345556786555555554321 21222232211224455789999999999999999985 45678999999999
Q ss_pred ccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccccc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh-
Q psy786 87 ESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK- 164 (176)
Q Consensus 87 ~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~- 164 (176)
++++|.++|+|++|++|+|| +++|++||+|+++++..... ..+++++++++|||++++|||+|++++.+++++|++.
T Consensus 214 a~~~G~~~Eal~~A~~~~lp-vi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~a 292 (407)
T 1qs0_A 214 ATAESDFHTALTFAHVYRAP-VILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERA 292 (407)
T ss_dssp GGGSHHHHHHHHHHHHHTCC-EEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred hhhcChHHHHHHHHHHHCcC-EEEEEECCCcceeeccccccCCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999 88889999999988766544 4578999999999999999999999999999999863
Q ss_pred --CCCcEEEEeee
Q psy786 165 --AIGCVWIQRGC 175 (176)
Q Consensus 165 --~~~P~lI~~~~ 175 (176)
.++|+|||+.|
T Consensus 293 r~~~gP~lIe~~t 305 (407)
T 1qs0_A 293 RRGLGPSLIEWVT 305 (407)
T ss_dssp HTTSCCEEEEEEC
T ss_pred HhcCCCEEEEEEe
Confidence 57999999976
No 19
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.94 E-value=4.4e-27 Score=197.36 Aligned_cols=158 Identities=23% Similarity=0.260 Sum_probs=124.7
Q ss_pred HHHHHHHcCCCCHHHHhhhhhc--CC----CCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECC
Q psy786 12 RSKAWAEAGLFPVSELKNLRKI--DS----DLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGD 85 (176)
Q Consensus 12 ~ya~l~~~G~~~~e~l~~~r~~--~~----~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GD 85 (176)
.+.++..+|+.+.+.+..|... |. +-..|. ....+...+|+||+++|+|+|+|+|.++ .+++++|||++||
T Consensus 95 ~~~~~~~~G~~~~~i~~e~~g~~~g~~~g~gg~~H~--~~~~~~~~~g~~G~~lp~A~G~A~A~~~-~~~~~~vv~~~GD 171 (365)
T 2ozl_A 95 AHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHM--YAKNFYGGNGIVGAQVPLGAGIALACKY-NGKDEVCLTLYGD 171 (365)
T ss_dssp CHHHHHHTTCCHHHHHHHHTTCTTSTTTTSSCTTCC--CBTTBCCCCCSTTTHHHHHHHHHHHHHH-HTCCCCEEEEEET
T ss_pred HHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCCCc--CccccCCCcchhhhhhHHHHHHHHHHHh-cCCCceEEEEECc
Confidence 6788899997766666666332 10 111222 1124455679999999999999999985 3567899999999
Q ss_pred CccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh-
Q psy786 86 GESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK- 164 (176)
Q Consensus 86 G~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~- 164 (176)
|++++|.++|+|++|+.|+|| +++|++||+|+++++.......++|.+ +++|+++++|||+|++++.+++++|+++
T Consensus 172 Ga~~~G~~~Ealn~A~~~~lp-vi~vv~NN~~g~~t~~~~~~~~~~~~~--ra~g~p~~~VdG~D~~av~~a~~~A~~~~ 248 (365)
T 2ozl_A 172 GAANQGQIFEAYNMAALWKLP-CIFICENNRYGMGTSVERAAASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYC 248 (365)
T ss_dssp TGGGCHHHHHHHHHHHHTTCC-EEEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCEEEEETTCHHHHHHHHHHHHHHH
T ss_pred hhhhccHHHHHHHHHHHHCcC-EEEEEECCCcccCCCcccccCCCCHHH--HhCCCCEEEEeCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999 667789999999876554444456665 7999999999999999999999999853
Q ss_pred --CCCcEEEEeee
Q psy786 165 --AIGCVWIQRGC 175 (176)
Q Consensus 165 --~~~P~lI~~~~ 175 (176)
.++|+|||+.|
T Consensus 249 r~~~gP~lIe~~t 261 (365)
T 2ozl_A 249 RSGKGPILMELQT 261 (365)
T ss_dssp HTTCCCEEEEEEC
T ss_pred HhCCCCEEEEEEe
Confidence 47999999976
No 20
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=99.92 E-value=5.7e-25 Score=199.14 Aligned_cols=161 Identities=19% Similarity=0.234 Sum_probs=138.1
Q ss_pred hHHHHHHHHcCCCCH---------HHHhh-hhhcCC--CCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcc
Q psy786 10 TNRSKAWAEAGLFPV---------SELKN-LRKIDS--DLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASY 77 (176)
Q Consensus 10 ~~~ya~l~~~G~~~~---------e~l~~-~r~~~~--~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~ 77 (176)
+.||+.|+..|.++. |+|.+ ||++.. +++|||.+.+|+++.++|++|++++.|+|+|+..+ +.
T Consensus 120 p~lYa~l~l~G~~~~~~p~~s~d~e~Lk~lfrqfs~~gg~pgHp~~~tpGve~~tG~LGqGls~AvG~A~~~~-----~~ 194 (845)
T 3ahc_A 120 PAGTSQSYVDGTYTEYYPNITKDEAGLQKFFRQFSYPGGIPSHFAPETPGSIHEGGELGYALSHAYGAVMNNP-----SL 194 (845)
T ss_dssp HHHHHHHHHHTHHHHHCTTSCSSHHHHHHHHHHBTCTTSBCSSCCTTSTTCSCCCSSTTCHHHHHHHHHTTCT-----TC
T ss_pred HHHHHHHHHcCCCccccccccccHHHHHHHHHhccCCCCCCCCCCCCCCCeecCCCCccchHhHHhhhhhcCC-----CC
Confidence 579999999998653 77877 788831 29999998899999999999999999999997554 77
Q ss_pred eEEEEECCCccCCch---HHHHHHHhhhcCCCcEEEEEecCCCccccCcccc-cccHHHHHHHhhcCceEE-EecC-C--
Q psy786 78 RTYCLVGDGESAEGS---IWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ-HQTEVYRKRLDAFGFNAV-VVDG-H-- 149 (176)
Q Consensus 78 ~vv~~~GDG~~~~G~---~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~-~vdG-~-- 149 (176)
+|+|++|||+.++|. .||+..++..+++.+|+.|+|+|++++++++... .+..++.+++++|||+++ .||| +
T Consensus 195 ~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N~~~i~g~t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~ 274 (845)
T 3ahc_A 195 FVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNE 274 (845)
T ss_dssp EEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEECSBSSSSBCHHHHSCHHHHHHHHHHTTEEEEEEECSSSSC
T ss_pred eEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECCCCcCCCCccccccCcHHHHHHHHHCCCEEeEEeCCCCCc
Confidence 999999999999999 9999999999999999999999999999988643 356889999999999999 9999 8
Q ss_pred CHHHHHHHHHHHHh--------------h--CCCc--EEEEeee
Q psy786 150 DVEHLVKVSSFKLQ--------------K--AIGC--VWIQRGC 175 (176)
Q Consensus 150 d~~~l~~al~~a~~--------------~--~~~P--~lI~~~~ 175 (176)
|++++.+++++|++ . .++| .+|.++.
T Consensus 275 D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT 318 (845)
T 3ahc_A 275 DHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFRT 318 (845)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEC
Confidence 99999988764441 1 2579 8887764
No 21
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=99.88 E-value=2.4e-23 Score=190.30 Aligned_cols=125 Identities=19% Similarity=0.151 Sum_probs=107.3
Q ss_pred CCcccchhHHHHHHHHHhchhcCC---------CcceEEEEECCCcc-CCchHHHHHHHhhhcCCC--cEEEEEecCCCc
Q psy786 51 GTGSLGQGLSVAAGMAYVGKYFDK---------ASYRTYCLVGDGES-AEGSIWEALHFASYYKLD--NLCVIFDINRLG 118 (176)
Q Consensus 51 ~~g~~G~~l~~AvG~A~a~~~~~~---------~~~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp--~liiV~~nn~~~ 118 (176)
..++||+++|.|+|+|+|.++.+. .+..+||++|||+| ++|.++|+|++|+.++|| .+++|++||+|+
T Consensus 243 n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g 322 (868)
T 2yic_A 243 NPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIG 322 (868)
T ss_dssp CCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCB
T ss_pred CCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcc
Confidence 467899999999999999886421 45789999999997 899999999999999999 567777788999
Q ss_pred cccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEeee
Q psy786 119 QSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQRGC 175 (176)
Q Consensus 119 ~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~~~ 175 (176)
++++.....+.+++.+++++|||++++|||+|++++.+++++|+++ .++|+|||+.|
T Consensus 323 ~st~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~t 382 (868)
T 2yic_A 323 FTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLC 382 (868)
T ss_dssp TTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred cccCccccccccCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9987554444455678999999999999999999999999999863 47999999976
No 22
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=99.87 E-value=1e-22 Score=190.04 Aligned_cols=170 Identities=18% Similarity=0.117 Sum_probs=125.7
Q ss_pred CCCChHHHHHHHHcCCCCHHHHhhhhhc--CC------CCCCCCCCC----C--------CccccCCcccchhHHHHHHH
Q psy786 6 IPFRTNRSKAWAEAGLFPVSELKNLRKI--DS------DLEGHPTPR----L--------NFIDVGTGSLGQGLSVAAGM 65 (176)
Q Consensus 6 ~~~~~~~ya~l~~~G~~~~e~l~~~r~~--~~------~l~~~~~~~----~--------~~~~~~~g~~G~~l~~AvG~ 65 (176)
|+||.-+....-.+|+.+.+.|..|... +. ....|.... . -.+...+++||+++|.|+|+
T Consensus 423 m~hRg~~~~La~~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~A~G~ 502 (1113)
T 2xt6_A 423 MPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGL 502 (1113)
T ss_dssp CCSTTHHHHHHHTTCCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHH
T ss_pred ccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHH
Confidence 4688876666666897655555555221 11 001111000 0 01223468899999999999
Q ss_pred HHhchhcCC---------CcceEEEEECCCcc-CCchHHHHHHHhhhcCCC--cEEEEEecCCCccccCcccccccHHHH
Q psy786 66 AYVGKYFDK---------ASYRTYCLVGDGES-AEGSIWEALHFASYYKLD--NLCVIFDINRLGQSEPTSLQHQTEVYR 133 (176)
Q Consensus 66 A~a~~~~~~---------~~~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp--~liiV~~nn~~~~~~~~~~~~~~~~~~ 133 (176)
|+|.++.+. .+..++|++|||+| ++|.+||++++|+.++|| .+++|++||+|++++++....+..++.
T Consensus 503 A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gist~~~~~~s~~~~~ 582 (1113)
T 2xt6_A 503 VRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCT 582 (1113)
T ss_dssp HHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCSSSSTT
T ss_pred HHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccccCccccccccCHH
Confidence 999986432 46789999999996 899999999999999999 677778889999998755343334566
Q ss_pred HHHhhcCceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEeee
Q psy786 134 KRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQRGC 175 (176)
Q Consensus 134 ~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~~~ 175 (176)
+++++|||++++|||+|++++.+|+++|+++ .++|+|||+.|
T Consensus 583 ~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~t 627 (1113)
T 2xt6_A 583 DVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLC 627 (1113)
T ss_dssp GGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred HHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 7899999999999999999999999999862 37999999976
No 23
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.87 E-value=3e-22 Score=177.09 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=101.9
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc---
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ--- 126 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~--- 126 (176)
.++|+||+++|.|+|++++.+ +++|||++|||+|+++ +++|++|+++++|++++|+|||+|++.+..+..
T Consensus 410 ~~~g~mG~~l~~AiGaala~~-----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~~~ 482 (590)
T 1v5e_A 410 PLFATMGIAIPGGLGAKNTYP-----DRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNK 482 (590)
T ss_dssp CSSCCTTCHHHHHHHHHHHCT-----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSSCC
T ss_pred CCCCcccChHHHHHHHHHhCC-----CCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHhcC
Confidence 468999999999999999976 6799999999999974 588999999999999999999999998653321
Q ss_pred ------cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh--CCCcEEEEeee
Q psy786 127 ------HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK--AIGCVWIQRGC 175 (176)
Q Consensus 127 ------~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~--~~~P~lI~~~~ 175 (176)
...+||.+++++||+++++|+ +++++.+++++|++. .++|+|||+.+
T Consensus 483 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~~gp~liev~~ 537 (590)
T 1v5e_A 483 NLFGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKAGHTVVIDCKI 537 (590)
T ss_dssp SCCCCCCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCccccCCCCCHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHHhcCCCCCEEEEEEe
Confidence 234799999999999999997 899999999999853 28999999875
No 24
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=99.86 E-value=2.3e-22 Score=177.01 Aligned_cols=117 Identities=18% Similarity=0.183 Sum_probs=101.6
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---- 124 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---- 124 (176)
..++|+||+++|.|+|++++.+ +++|+|++|||+|++ .+++|++|+++++|++++|+|||+|++.+..+
T Consensus 416 ~~g~g~mG~~l~~AiGaala~~-----~~~vv~i~GDG~~~~--~~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~ 488 (566)
T 1ozh_A 416 SNGQQTMGVALPWAIGAWLVNP-----ERKVVSVSGDGGFLQ--SSMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKY 488 (566)
T ss_dssp CCTTCCTTCHHHHHHHHHHHST-----TSEEEEEEEHHHHHH--HTTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHH
T ss_pred CCCcccccchHHHHHHHHHhCC-----CCCEEEEEcChHHhc--cHHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhc
Confidence 3467999999999999999986 689999999999997 45789999999999999999999999876432
Q ss_pred -----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 -----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 -----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
......||.+++++||+++++|+ +++++.+++++|+ ..++|+|||+.+
T Consensus 489 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-~~~gp~liev~~ 541 (566)
T 1ozh_A 489 QRLSGVEFGPMDFKAYAESFGAKGFAVE--SAEALEPTLRAAM-DVDGPAVVAIPV 541 (566)
T ss_dssp SSCCSCBCCCCCHHHHHHTTTSEEEECC--SGGGHHHHHHHHH-HSSSCEEEEEEB
T ss_pred CCCccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 22334789999999999999997 7899999999997 478999999875
No 25
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=99.86 E-value=1.3e-21 Score=179.80 Aligned_cols=169 Identities=14% Similarity=0.077 Sum_probs=116.3
Q ss_pred CCCChHHHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCC-C---------Cc------cccCCcccchhHHHHHHHHHhc
Q psy786 6 IPFRTNRSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPR-L---------NF------IDVGTGSLGQGLSVAAGMAYVG 69 (176)
Q Consensus 6 ~~~~~~~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~-~---------~~------~~~~~g~~G~~l~~AvG~A~a~ 69 (176)
|+||.-+....-.+|+.+.+.|..|.....+..+-.+.. + ++ +.+..+++|+++|+|+|+|+|.
T Consensus 258 ~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~~p~A~G~A~A~ 337 (933)
T 2jgd_A 258 MAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRAR 337 (933)
T ss_dssp CCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccccCHHHHHHHHH
Confidence 467776655554589776666666643211111101100 0 01 1245678999999999999998
Q ss_pred hhcC----CCcceEEEEECCCcc-CCchHHHHHHHhhhcCCC---cEEEEEecCCCcccc-CcccccccHHHHHHHhhcC
Q psy786 70 KYFD----KASYRTYCLVGDGES-AEGSIWEALHFASYYKLD---NLCVIFDINRLGQSE-PTSLQHQTEVYRKRLDAFG 140 (176)
Q Consensus 70 ~~~~----~~~~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp---~liiV~~nn~~~~~~-~~~~~~~~~~~~~~a~a~G 140 (176)
++.+ +.+..+||++|||++ ++|+++|+|++|+.+++| ++++ ++||+|++++ +........++.+++++||
T Consensus 338 ~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~v-v~nN~~~ist~~~~~~~~~~~~~~~a~a~g 416 (933)
T 2jgd_A 338 LDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRI-VINNQVGFTTSNPLDARSTPYCTDIGKMVQ 416 (933)
T ss_dssp HTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEE-EEECC---------------CGGGGGGTTT
T ss_pred HhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEE-EEeCCccccCCCHHhcccchhHHHHHHHcC
Confidence 8643 256789999999998 899999999999999999 6555 5578899998 7776555566788999999
Q ss_pred ceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEeee
Q psy786 141 FNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQRGC 175 (176)
Q Consensus 141 ~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~~~ 175 (176)
|++++|||+|++++.+++++|+++ ..+|+|||+.|
T Consensus 417 ~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~t 454 (933)
T 2jgd_A 417 APIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVC 454 (933)
T ss_dssp CCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEee
Confidence 999999999999999999999853 36899999876
No 26
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=99.86 E-value=5e-22 Score=178.22 Aligned_cols=117 Identities=18% Similarity=0.145 Sum_probs=100.9
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---- 124 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---- 124 (176)
..++|+||+++|.|+|++++.+ +++|||++|||+|++ .+++|++|+++++|+++||+|||+|++.+..+
T Consensus 509 sg~~G~mG~~lpaAiGaalA~p-----~~~Vv~i~GDGsf~~--~~~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~~~~~ 581 (677)
T 1t9b_A 509 SGGLGTMGYGLPAAIGAQVAKP-----ESLVIDIDGDASFNM--TLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFY 581 (677)
T ss_dssp CCSSCCTTCHHHHHHHHHHHCT-----TSEEEEEEEHHHHHH--HGGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHS
T ss_pred CCCcchhhchHHHHHHHHHhCC-----CCeEEEEEeehHHhc--cHHHHHHHHHhCCCeEEEEEeCCCchhhhhhhhhhc
Confidence 3467999999999999999976 789999999999996 45679999999999999999999999865321
Q ss_pred ------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 ------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 ------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.....+||.+++++||+++++|+ +++++.+++++|+ ..++|+|||+.+
T Consensus 582 ~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~-~~~gp~lIev~~ 635 (677)
T 1t9b_A 582 EHRYSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFV-STKGPVLLEVEV 635 (677)
T ss_dssp TTCCCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHH-HCSSCEEEEEEB
T ss_pred CCCcccCcCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHH-HCCCcEEEEEEe
Confidence 11234689999999999999996 8999999999997 468999999875
No 27
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=99.86 E-value=3.9e-22 Score=174.03 Aligned_cols=113 Identities=24% Similarity=0.311 Sum_probs=99.1
Q ss_pred cccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc-------
Q psy786 53 GSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL------- 125 (176)
Q Consensus 53 g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~------- 125 (176)
|+||+++|.|+|++++.+ +++|||++|||+|+++ +++|++|+++++|++++|+|||+|++.+..+.
T Consensus 401 g~~G~~l~~A~G~a~a~~-----~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~ 473 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAEP-----ERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENV 473 (528)
T ss_dssp CCTTSHHHHHHHHHHHCT-----TSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCSC
T ss_pred ccccchHHHHHHHHHhCC-----CCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHhHHHHHHhcCCCc
Confidence 999999999999999986 6789999999999975 67899999999999999999999998654311
Q ss_pred ---ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 ---QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 ---~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.....|+.+++++||+++++|+ +.+++.+++++++ ..++|+|||+.+
T Consensus 474 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~-~~~gp~liev~~ 523 (528)
T 1q6z_A 474 PGLDVPGIDFRALAKGYGVQALKAD--NLEQLKGSLQEAL-SAKGPVLIEVST 523 (528)
T ss_dssp CSCBCCCCCHHHHHHHHTCEEEEES--SHHHHHHHHHHHH-TCSSCEEEEEEB
T ss_pred ccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH-HCCCcEEEEEEe
Confidence 1135689999999999999997 7899999999997 468999999975
No 28
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=99.85 E-value=5e-22 Score=174.98 Aligned_cols=116 Identities=18% Similarity=0.179 Sum_probs=101.4
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----- 124 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----- 124 (176)
.++|+||+++|.|+|++++.+ +++|||++|||+|+++ +++|++|+++++|++++|+|||+|++.+..+
T Consensus 433 ~g~g~mG~~l~~AiGaa~a~~-----~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~~~~~~~~~~~ 505 (573)
T 2iht_A 433 AGCSSFGYGIPAAIGAQMARP-----DQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHH 505 (573)
T ss_dssp SSSCCTTCHHHHHHHHHHHST-----TSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHS
T ss_pred CCCcccccHHHHHHHHHHhCC-----CCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchhhHHHHHHhcC
Confidence 467999999999999999986 6799999999999974 5789999999999999999999999876421
Q ss_pred ------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 ------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 ------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.....+|+.+++++||+++++|+ +.+++.+++++|+ ..++|+|||+.+
T Consensus 506 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~-~~~gp~liev~~ 559 (573)
T 2iht_A 506 RSHDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKGA-ELGRPFLIEVPV 559 (573)
T ss_dssp SCCGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHHH-TSSSCEEEEEEB
T ss_pred CCcCccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEC
Confidence 22334689999999999999996 8999999999997 478999999975
No 29
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=99.85 E-value=1.1e-21 Score=172.45 Aligned_cols=118 Identities=21% Similarity=0.210 Sum_probs=101.0
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----- 124 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----- 124 (176)
.++|+||+++|.|+|++++.+ +++++|+|++|||+|+++ +++|++|+++++|++++|+|||+|++.+..+
T Consensus 416 ~g~g~~G~~l~~AiGaa~a~~---~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~ 490 (563)
T 2uz1_A 416 GYLGSMGVGFGTALGAQVADL---EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVG 490 (563)
T ss_dssp CTTCCTTTHHHHHHHHHHHHH---HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTC
T ss_pred CCCccccChHHHHHHHHHHhh---CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcC
Confidence 457999999999999999983 126899999999999975 5689999999999999999999999876421
Q ss_pred --cc----cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 --LQ----HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 --~~----~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.. ....|+.+++++||+++++|+ +++++.+++++|++ .++|+|||+.+
T Consensus 491 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~-~~gp~liev~~ 544 (563)
T 2uz1_A 491 PNRVTGTRLENGSYHGVAAAFGADGYHVD--SVESFSAALAQALA-HNRPACINVAV 544 (563)
T ss_dssp TTCCCSCBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH-SSSCEEEEEEC
T ss_pred CCcccCCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHH-CCCCEEEEEEe
Confidence 11 134699999999999999996 89999999999974 78999999875
No 30
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=99.85 E-value=7.2e-22 Score=173.71 Aligned_cols=117 Identities=14% Similarity=0.099 Sum_probs=101.8
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---- 125 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---- 125 (176)
.++|+||+++|.|+|++++.+ +++|||++|||+|++ .+++|++|+++++|++++|+|||+|++.+..+.
T Consensus 406 ~~~g~mG~~l~~A~G~ala~~-----~~~vv~~~GDG~~~~--~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~ 478 (566)
T 2vbi_A 406 MQWGHIGWSVPSAFGNAMGSQ-----DRQHVVMVGDGSFQL--TAQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYN 478 (566)
T ss_dssp TTTCCTTTHHHHHHHHHHTCT-----TSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGG
T ss_pred CcccchhhHHHHHHHHHHhCC-----CCcEEEEEcchHHHh--hHHHHHHHHHhCCCcEEEEEECCcceEEEeeccCCcc
Confidence 468999999999999999976 689999999999996 457799999999999999999999999875432
Q ss_pred ccccHHHHHHHhhcCc-----eEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 QHQTEVYRKRLDAFGF-----NAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 ~~~~~~~~~~a~a~G~-----~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.....||.+++++||+ ++++|+ +++++.++++++++..++|+|||+.+
T Consensus 479 ~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~~~~~gp~liev~~ 531 (566)
T 2vbi_A 479 YIKNWDYAGLMEVFNAGEGHGLGLKAT--TPKELTEAIARAKANTRGPTLIECQI 531 (566)
T ss_dssp CCCCCCTTTHHHHHHTTTCCCEEEEEC--SHHHHHHHHHHHHHCCSSCEEEEEEC
T ss_pred CCCCCCHHHHHHHcCCCCCCccEEEeC--CHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 2234689999999999 999997 89999999999974338999999875
No 31
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.85 E-value=9.8e-22 Score=174.18 Aligned_cols=117 Identities=19% Similarity=0.187 Sum_probs=99.8
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccC-------
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEP------- 122 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~------- 122 (176)
...|+||+++|.|+|++++.+ +++|||++|||+|+++ +++|++|+++++|+++||+||++|++...
T Consensus 417 ~~~g~~G~~l~~A~Gaala~~-----~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~~~~~~~~~~~ 489 (603)
T 4feg_A 417 NLFATMGVGIPGAIAAKLNYP-----ERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQ 489 (603)
T ss_dssp CSSCCTTCHHHHHHHHHHHCT-----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCS
T ss_pred cccccccchhHHHhhHHHhCC-----CCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHHHHHHHHHhcC
Confidence 357999999999999999986 6899999999999874 67799999999999999999999997321
Q ss_pred ---cccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh-hCCCcEEEEeee
Q psy786 123 ---TSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ-KAIGCVWIQRGC 175 (176)
Q Consensus 123 ---~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~-~~~~P~lI~~~~ 175 (176)
.......+|+.+++++||+++++|+ +++++.+++++|++ ..++|+|||+.+
T Consensus 490 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~~~~~gP~lIev~~ 544 (603)
T 4feg_A 490 NDFIGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAKAIAQHEPVLIDAVI 544 (603)
T ss_dssp SCCCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred CCcccCcCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1122345789999999999999997 78899999999973 468999999875
No 32
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=99.85 E-value=1.3e-21 Score=172.10 Aligned_cols=118 Identities=15% Similarity=0.102 Sum_probs=102.1
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc---
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL--- 125 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~--- 125 (176)
..++|+||+++|.|+|++++.+ +++|+|++|||+|++ .+++|+++.++++|++++|+|||+|++.+..+.
T Consensus 409 ~~~~g~~G~~l~~A~G~ala~~-----~~~vv~i~GDGs~~~--~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~ 481 (568)
T 2wvg_A 409 EMQWGHIGWSVPAAFGYAVGAP-----ERRNILMVGDGSFQL--TAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPY 481 (568)
T ss_dssp CTTTCCTTTHHHHHHHHHHHCT-----TSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGG
T ss_pred CCCcchhhhHHHHHHHHHHhCC-----CCcEEEEEcChhHhc--cHHHHHHHHHcCCCcEEEEEECCcceEeeeeccCCC
Confidence 3468999999999999999986 689999999999996 467799999999999999999999998865432
Q ss_pred -ccccHHHHHHHhhcCc---------eEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 -QHQTEVYRKRLDAFGF---------NAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 -~~~~~~~~~~a~a~G~---------~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
....+||.+++++||+ ++++|+ +.+++.++++++++..++|+|||+.+
T Consensus 482 ~~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v~--~~~el~~al~~a~~~~~gp~liev~~ 539 (568)
T 2wvg_A 482 NNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAK--TGGELAEAIKVALANTDGPTLIECFI 539 (568)
T ss_dssp GCCCCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHHCCSSCEEEEEEC
T ss_pred cCCCCCCHHHHHHHhCCCcccccCCcceEEeC--CHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 2234689999999999 899996 89999999999985338999999875
No 33
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=99.85 E-value=4.2e-22 Score=176.06 Aligned_cols=116 Identities=17% Similarity=0.195 Sum_probs=101.1
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----- 124 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----- 124 (176)
.++|+||+++|.|+|++++.+ +++|||++|||+|+++ +++|++|+++++|++++|+|||+|++.+..+
T Consensus 421 ~g~g~mG~~l~~AiGaala~~-----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~ 493 (589)
T 2pgn_A 421 MAEGILGCGFPMALGAQLAEP-----NSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGANWTLMNHQFG 493 (589)
T ss_dssp TTTCCTTCHHHHHHHHHHHCT-----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHHS
T ss_pred CCcchhhhHHHHHHHHHHhCC-----CCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCcccchHHHHhhcC
Confidence 367999999999999999986 6899999999999974 5889999999999999999999999876432
Q ss_pred ----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 ----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 ----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
......||.+++++||+++++|+ +++++.+++++|++ .++|+|||+.+
T Consensus 494 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~-~~gp~liev~~ 545 (589)
T 2pgn_A 494 QNNWTEFMNPDWVGIAKAFGAYGESVR--ETGDIAGALQRAID-SGKPALIEIPV 545 (589)
T ss_dssp SCCSCBCCCCCHHHHHHHHTCEEEECT--TTCCHHHHHHHHHH-HCSCEEEEEEC
T ss_pred CCccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh-CCCCEEEEEEe
Confidence 22235799999999999999997 78899999999974 58999999875
No 34
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=99.85 E-value=1.4e-21 Score=171.30 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=99.0
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---- 125 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---- 125 (176)
.+.|+||+++|.|+|++++.+ +++|||++|||+|+++ +++|++++++++|++++|+|||+|++....+.
T Consensus 403 ~~~g~mG~~l~~AiGaala~~-----~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~~~~~ 475 (549)
T 3eya_A 403 FNHGSMANAMPQALGAQATEP-----ERQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGY 475 (549)
T ss_dssp TTTCCTTCHHHHHHHHHHHST-----TSCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCCCC---------
T ss_pred CCCchhhhHHHHHHHHHHhCC-----CCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHhcCC
Confidence 467999999999999999986 6899999999999864 57899999999999999999999987543221
Q ss_pred -----ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 -----QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 -----~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
....+||.+++++||+++++|+ +++++.+++++++ ..++|+|||+.+
T Consensus 476 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~-~~~gp~liev~~ 527 (549)
T 3eya_A 476 LTDGTELHDTNFARIAEACGITGIRVE--KASEVDEALQRAF-SIDGPVLVDVVV 527 (549)
T ss_dssp ---CCBCCCCCHHHHHHHTTSEEEEEC--SGGGHHHHHHHHH-HSSSCEEEEEEB
T ss_pred CCcCCcCCCCCHHHHHHHcCCcEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 1234699999999999999996 8899999999997 468999999975
No 35
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=99.85 E-value=1.1e-21 Score=173.45 Aligned_cols=116 Identities=19% Similarity=0.139 Sum_probs=99.7
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----- 124 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----- 124 (176)
.++|+||+++|.|+|++++.+ +++|||++|||+|+++ +++|++|+++++|++++|+|||+|++.+..+
T Consensus 423 g~~G~~G~~l~~AiGaala~~-----~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~ 495 (590)
T 1ybh_A 423 GGLGAMGFGLPAAIGASVANP-----DAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYK 495 (590)
T ss_dssp CSSCCTTCHHHHHHHHHHHCT-----TSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHST
T ss_pred CCcccccchHHHHHHHHHhCC-----CCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchHHHHHHHHhcC
Confidence 457999999999999999986 6899999999999974 5689999999999999999999999864321
Q ss_pred -----cc--c------ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 -----LQ--H------QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 -----~~--~------~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.. . ...||.+++++||+++++|+ +++++.+++++|+ ..++|+|||+.+
T Consensus 496 ~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-~~~gp~liev~~ 556 (590)
T 1ybh_A 496 ANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTML-DTPGPYLLDVIC 556 (590)
T ss_dssp TCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHH-HSSSCEEEEEEC
T ss_pred CccccccccccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 11 1 13689999999999999996 8999999999997 468999999875
No 36
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=99.84 E-value=1e-21 Score=172.88 Aligned_cols=118 Identities=20% Similarity=0.240 Sum_probs=100.4
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---- 124 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---- 124 (176)
..++|+||+++|.|+|++++.+ +++|||++|||+|++ .+++|++|+++++|++++|+|||+|++.+...
T Consensus 421 ~~~~g~mG~~l~~A~Gaala~~-----~~~vv~~~GDG~~~~--~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~ 493 (570)
T 2vbf_A 421 QPLWGSIGYTFPAALGSQIADK-----ESRHLLFIGDGSLQL--TVQELGLSIREKLNPICFIINNDGYTVEREIHGPTQ 493 (570)
T ss_dssp CTTTCCTTTHHHHHHHHHHHCT-----TSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTC
T ss_pred CccchhhhhhHHHHHHHHHhCC-----CCcEEEEEcchhhhc--CHHHHHHHHHcCCCCEEEEEECCchHHHHHHhccCC
Confidence 3478999999999999999986 689999999999996 46779999999999999999999999865322
Q ss_pred --cccccHHHHHHHhhcCce-----EEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 --LQHQTEVYRKRLDAFGFN-----AVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 --~~~~~~~~~~~a~a~G~~-----~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.....+||.+++++||++ +++|+ +++++.++++++....++|+|||+.+
T Consensus 494 ~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~~~~~~p~liev~~ 549 (570)
T 2vbf_A 494 SYNDIPMWNYSKLPETFGATEDRVVSKIVR--TENEFVSVMKEAQADVNRMYWIELVL 549 (570)
T ss_dssp GGGCCCCCCGGGHHHHTTCCTTTEEEEEEC--BHHHHHHHHHHHHHCTTSEEEEEEEC
T ss_pred CccCCCCCCHHHHHHHcCCCcCCcceEEec--CHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 112346899999999998 88996 89999999998533568999999875
No 37
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=99.84 E-value=1.1e-21 Score=172.54 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=100.3
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----- 124 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----- 124 (176)
.++|+||+++|.|+|+|++.+ +++|||++|||+|+ +.+++|++|+++++|++++|+|||+|++....+
T Consensus 419 ~~~g~mG~~l~~A~G~ala~~-----~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~ 491 (565)
T 2nxw_A 419 GYYAGMGFGVPAGIGAQCVSG-----GKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRTFQPESAF 491 (565)
T ss_dssp TTTCCTTCHHHHHHHHHHHTT-----TCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCHHHHHHCTTCGG
T ss_pred CccccccccchHHHHHHHhCC-----CCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCcEEeeecccCCC
Confidence 457999999999999999976 67999999999999 467889999999999999999999999864322
Q ss_pred cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcE-EEEeee
Q psy786 125 LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCV-WIQRGC 175 (176)
Q Consensus 125 ~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~-lI~~~~ 175 (176)
......||.+++++||+++++|+ +++++.++++++++ .++|. |||+.+
T Consensus 492 ~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~-~~gp~~liev~~ 540 (565)
T 2nxw_A 492 NDLDDWRFADMAAGMGGDGVRVR--TRAELKAALDKAFA-TRGRFQLIEAMI 540 (565)
T ss_dssp GBCCCCCHHHHTGGGTSEEEEEC--BHHHHHHHHHHHHH-CCSSCEEEEEEC
T ss_pred CcCCCCCHHHHHHHcCCCEEEeC--CHHHHHHHHHHHHh-cCCCeEEEEEEc
Confidence 12235689999999999999997 89999999999974 57887 999875
No 38
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=99.84 E-value=1.2e-21 Score=171.61 Aligned_cols=117 Identities=16% Similarity=0.086 Sum_probs=100.7
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---- 124 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---- 124 (176)
..++|+||+++|.|+|++++.+ +++|||++|||+|++ .+++|+++.++++|++++|+|||+|++.....
T Consensus 404 ~~~~g~mG~~l~~A~G~a~a~~-----~~~vv~~~GDG~~~~--~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~ 476 (552)
T 1ovm_A 404 QPLWGSIGYTLAAAFGAQTACP-----NRRVIVLTGDGAAQL--TIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQ 476 (552)
T ss_dssp CTTTCCTTHHHHHHHHHHHHCT-----TSCEEEEEEHHHHHH--HTTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTC
T ss_pred chhhHhhhhHHHHHHHHHHhCC-----CCcEEEEECchHHHh--HHHHHHHHHHhCCCCEEEEEECCCCeEEEeeccCCC
Confidence 3468999999999999999976 689999999999986 56789999999999999999999999874321
Q ss_pred --cccccHHHHHHHhhcCc----eEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 --LQHQTEVYRKRLDAFGF----NAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 --~~~~~~~~~~~a~a~G~----~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.....+||.+++++||+ ++++|+ +++++.+++++++ ..++|+|||+.+
T Consensus 477 ~~~~~~~~d~~~~a~a~G~~~~~~~~~v~--~~~~l~~al~~a~-~~~gp~liev~~ 530 (552)
T 1ovm_A 477 RYNDIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEKVA-HHERLSLIEVML 530 (552)
T ss_dssp GGGCCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHHHT-TCSSEEEEEEEC
T ss_pred CcccCCCCCHHHHHHHhCCCcCCCEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEc
Confidence 12234689999999999 999997 8999999999986 468999999875
No 39
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=99.84 E-value=7.7e-22 Score=173.33 Aligned_cols=122 Identities=15% Similarity=0.091 Sum_probs=101.2
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---- 124 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---- 124 (176)
..++|+||+++|.|+|+|++.+. .+.+++|||++|||+|++ .+++|++|+++++|++++|+|||+|++.+...
T Consensus 409 ~~~~g~mG~~l~~A~Gaala~~~-~~~~~~vv~~~GDG~~~~--~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~ 485 (563)
T 2vk8_A 409 QVLWGSIGFTTGATLGAAFAAEE-IDPKKRVILFIGDGSLQL--TVQEISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKA 485 (563)
T ss_dssp CTTTCCTTHHHHHHHHHHHHHHH-HCTTCCEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTC
T ss_pred ccchhhhhhHHHHHHHHHHhCcc-cCCCCCEEEEEcchHhhc--cHHHHHHHHHcCCCcEEEEEECCcchhhhhhhCCCC
Confidence 45789999999999999999873 233478999999999996 46789999999999999999999999864321
Q ss_pred --cccccHHHHHHHhhcCce---EEEecCCCHHHHHHHHH-HHHhhCCCcEEEEeee
Q psy786 125 --LQHQTEVYRKRLDAFGFN---AVVVDGHDVEHLVKVSS-FKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 --~~~~~~~~~~~a~a~G~~---~~~vdG~d~~~l~~al~-~a~~~~~~P~lI~~~~ 175 (176)
.....+||.+++++||++ +++|+ +++++.++++ ++++..++|+|||+++
T Consensus 486 ~~~~~~~~d~~~~a~a~G~~~~~~~~v~--~~~el~~al~~~a~~~~~~p~liev~~ 540 (563)
T 2vk8_A 486 QYNEIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKSFNDNSKIRMIEVML 540 (563)
T ss_dssp GGGCCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTTTTSCSSEEEEEEEC
T ss_pred CcccCCCCCHHHHHHHhCCCCCcEEEec--CHHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 112346899999999999 99997 7999999999 7864334799999875
No 40
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.84 E-value=2.5e-21 Score=171.78 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=99.4
Q ss_pred cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786 50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----- 124 (176)
Q Consensus 50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----- 124 (176)
.++|+||+++|.|+|+|++.+ +++|||++|||+|+++ +++|++|+++++|++++|+|||+|++....+
T Consensus 439 g~~G~~G~~l~~AiGaala~~-----~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~ 511 (616)
T 2pan_A 439 GQAGPLGWTIPAALGVCAADP-----KRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDM 511 (616)
T ss_dssp TTTCCTTCHHHHHHHHHHHCT-----TCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHGGGGTC
T ss_pred CCcccccchHHHHHHHHHhCC-----CCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcC
Confidence 467999999999999999986 6899999999999974 5689999999999999999999999754311
Q ss_pred ---------c--ccc----cHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEeee
Q psy786 125 ---------L--QHQ----TEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQRGC 175 (176)
Q Consensus 125 ---------~--~~~----~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~~~ 175 (176)
. ..+ ..||.+++++||+++++|+ +++++.+++++|+++ .++|+|||+.+
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~lIev~~ 578 (616)
T 2pan_A 512 DYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQYRVPVVVEVIL 578 (616)
T ss_dssp CCSCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEEC--SGGGHHHHHHHHHHHHHHHCSCEEEEEEB
T ss_pred CccccccccccccccCCCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEe
Confidence 0 111 2689999999999999996 789999999999751 58999999875
No 41
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=99.82 E-value=1.5e-20 Score=165.33 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=97.7
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCC-ccccCcc--c
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRL-GQSEPTS--L 125 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~-~~~~~~~--~ 125 (176)
..++|+||+++|.|+|++++ + +++|+|++|||+|++ .+++|+|++++++|+++||+||++| .+...+. .
T Consensus 422 ~g~~g~~G~~l~~AiGaala-~-----~~~vv~i~GDGsf~~--~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~ 493 (568)
T 2c31_A 422 SGTWGVMGIGMGYCVAAAAV-T-----GKPVIAVEGDSAFGF--SGMELETICRYNLPVTVIIMNNGGIYKGNEADPQPG 493 (568)
T ss_dssp STTTTCSSCHHHHHHHHHHH-H-----CSCEEEEEEHHHHHT--TGGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTT
T ss_pred CCCCccccccHHHHHHHHhC-C-----CCcEEEEEcchHhhc--cHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcC
Confidence 45679999999999999998 5 679999999999996 4577999999999999999999985 4432220 0
Q ss_pred -----ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 -----QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 -----~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
....+||.+++++||+++++|+ +++++.+++++|+ ..++|+|||+.+
T Consensus 494 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~liev~~ 545 (568)
T 2c31_A 494 VISCTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAV-ASGKPCLINAMI 545 (568)
T ss_dssp BCCTTBCCCCCHHHHHHTTTCEEEEES--SHHHHHHHHHHHH-HHTSCEEEEEEB
T ss_pred CcccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 1345799999999999999996 8999999999997 468999999975
No 42
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=99.81 E-value=2.4e-20 Score=163.87 Aligned_cols=116 Identities=18% Similarity=0.128 Sum_probs=97.2
Q ss_pred ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCC-ccccCc----
Q psy786 49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRL-GQSEPT---- 123 (176)
Q Consensus 49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~-~~~~~~---- 123 (176)
...+|+||+++|.|+|++++ + +++|+|++|||+|++. +++|.+++++++|++++|+||++| ++....
T Consensus 417 ~g~~g~~G~~l~~AiGaa~a-~-----~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~ 488 (564)
T 2q28_A 417 CGTWGVMGIGMGYAIGASVT-S-----GSPVVAIEGDSAFGFS--GMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGA 488 (564)
T ss_dssp STTTTCTTCHHHHHHHHHHH-H-----CSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSS
T ss_pred CCCCCcccchHHHHHHHhhc-C-----CCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhcc
Confidence 34679999999999999998 5 6799999999999873 467999999999999999999985 554321
Q ss_pred ---cc--ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 124 ---SL--QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 124 ---~~--~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
.. ..+.+||.+++++||+++++|+ +++++.+++++|+ ..++|+|||+.+
T Consensus 489 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~liev~~ 542 (564)
T 2q28_A 489 GAPSPTDLLHHARYDKLMDAFRGVGYNVT--TTDELRHALTTGI-QSRKPTIINVVI 542 (564)
T ss_dssp CCCCTTBCCTTCCGGGGGGGGTCEEEEEC--SHHHHHHHHHHHH-HHTSCEEEEEEB
T ss_pred CCccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence 00 1124689999999999999996 8999999999997 468999999875
No 43
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=99.81 E-value=8.7e-21 Score=168.06 Aligned_cols=114 Identities=11% Similarity=0.027 Sum_probs=96.9
Q ss_pred CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc-----
Q psy786 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----- 125 (176)
Q Consensus 51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----- 125 (176)
+.++||+++|.|+|++++ + +++|||++|||+|+++ +++|++|+++++|++++|+|||+|++......
T Consensus 453 G~~~ig~~l~~AiGaala-~-----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lp~~ivv~NN~~~~i~~~~~~~q~~~ 524 (604)
T 2x7j_A 453 GANGIDGVVSSAMGVCEG-T-----KAPVTLVIGDLSFYHD--LNGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKT 524 (604)
T ss_dssp TTCCSSSHHHHHHHHHHH-H-----TSCEEEEEEHHHHHHT--GGGGHHHHHHCCCEEEEEEECSSCGGGGGSGGGSCHH
T ss_pred CcCCcCcHHHHHHHHHhc-C-----CCcEEEEEccHHHHhH--HHHHHHhhhcCCCeEEEEEeCCCCcccccCCCCccch
Confidence 467899999999999999 4 5789999999999974 46799999999999999999999998543211
Q ss_pred -------ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 126 -------QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 126 -------~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
....+||.+++++||+++++|+ +++++.+++++|+ ..++|+|||+++
T Consensus 525 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-~~~gp~liev~~ 578 (604)
T 2x7j_A 525 HFEDLFGTPTGLDFKHAAALYGGTYSCPA--SWDEFKTAYAPQA-DKPGLHLIEIKT 578 (604)
T ss_dssp HHHHHTTCCCCCCTHHHHHHTTCEEECCS--SHHHHHHHCCCCC-SSCCEEEEEEEC
T ss_pred hhHhhccCCCCCCHHHHHHHcCCeEEecC--CHHHHHHHHHHHH-hCCCCEEEEEEC
Confidence 0124689999999999999997 8999999999887 468999999975
No 44
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=99.80 E-value=3.8e-20 Score=162.56 Aligned_cols=113 Identities=16% Similarity=0.074 Sum_probs=91.2
Q ss_pred CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc------
Q psy786 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS------ 124 (176)
Q Consensus 51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~------ 124 (176)
..|++|+ +|.|+|++++ + +++|||++|||+|++. .++|+|++++++|+++||+||++|++.+..+
T Consensus 415 ~~g~~G~-l~~A~Gaa~a-~-----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~ 485 (556)
T 3hww_A 415 ASGIDGL-LSTAAGVQRA-S-----GKPTLAIVGDLSALYD--LNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSER 485 (556)
T ss_dssp SCCSSSH-HHHHHHHHHH-H-----CCCEEEEEEHHHHHHT--GGGHHHHTTCSSCEEEEEEESCC--------------
T ss_pred ccccccH-HHHHHHHHhc-C-----CCcEEEEEccHHhhhc--chhhHhhcccCCCcEEEEEECCCCCcccCCCCcchhH
Confidence 5677788 9999999998 4 6789999999999864 4679999999999999999999998764321
Q ss_pred c----ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 125 L----QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 125 ~----~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
. ....+||.+++++||+++++|+ +++++.+++++++ ..++|+|||+.+
T Consensus 486 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~-~~~gp~liev~~ 537 (556)
T 3hww_A 486 ERFYLMPQNVHFEHAAAMFELKYHRPQ--NWQELETAFADAW-RTPTTTVIEMVV 537 (556)
T ss_dssp ---CCCCCCCCSHHHHHHTTCEEECCS--SHHHHHHHHHHHT-TSSSEEEEEEEC
T ss_pred HHhccCCCCCCHHHHHHHcCCcEEecC--CHHHHHHHHHHHH-hCCCCEEEEEEC
Confidence 1 1235789999999999999996 8999999999997 468999999975
No 45
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=99.78 E-value=1.4e-19 Score=159.68 Aligned_cols=110 Identities=17% Similarity=0.079 Sum_probs=84.3
Q ss_pred ccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc---c--cc--
Q psy786 54 SLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT---S--LQ-- 126 (176)
Q Consensus 54 ~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~---~--~~-- 126 (176)
.+|+++|.|+|+|++ +++|||++|||+|++ ..++|+||+++++|++++|+||++|++.... + ..
T Consensus 437 G~~g~l~~AiGaa~~-------~~~vv~i~GDGsf~~--~~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~ 507 (578)
T 3lq1_A 437 GIDGVVSSALGASVV-------FQPMFLLIGDLSFYH--DMNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFE 507 (578)
T ss_dssp CSSSHHHHHHHHTTT-------SSSEEEEEEHHHHHH--TGGGGHHHHHTTCCEEEEEECCC------------------
T ss_pred ccccHHHHHHHHhcC-------CCCEEEEEchHHHHh--hHHHHHhhccCCCCeEEEEEECCcCccccccccccccchhh
Confidence 344579999999742 578999999999996 4567999999999999999999999987632 1 00
Q ss_pred -----cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 127 -----HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 127 -----~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
...+||.+++++||+++++|+ +++++.+++++|+ ..++|+|||+.+
T Consensus 508 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-~~~gp~liev~~ 558 (578)
T 3lq1_A 508 SLFGTSTELDFRFAAAFYDADYHEAK--SVDELEEAIDKAS-YHKGLDIIEVKT 558 (578)
T ss_dssp -------CCCTHHHHHHTTCEEEECC--SHHHHHHHHHHHT-TSSSEEEEEEC-
T ss_pred hhccCCCCCCHHHHHHHcCCceEecC--CHHHHHHHHHHHH-hCCCCEEEEEEC
Confidence 123589999999999999996 8999999999997 478999999875
No 46
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.54 E-value=1.3e-14 Score=137.12 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=80.9
Q ss_pred cceEEEEECCC-ccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc----------------cccHHHHHHHhh
Q psy786 76 SYRTYCLVGDG-ESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ----------------HQTEVYRKRLDA 138 (176)
Q Consensus 76 ~~~vv~~~GDG-~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~----------------~~~~~~~~~a~a 138 (176)
+++||++.||| +|++| .++|.++.++++|++++|+||+.|++.+.+... ...+|+.++|++
T Consensus 953 ~~~Vv~i~GDG~~~~mg--~~eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a 1030 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIG--YGGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMT 1030 (1231)
T ss_dssp CCEEEEEEEHHHHHTTT--HHHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT
T ss_pred CCcEEEEeCcHHHHHcc--hHHHHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHH
Confidence 47899999999 88976 356999999999999999999999998754321 123589999999
Q ss_pred cCceEEE-ecC-CCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 139 FGFNAVV-VDG-HDVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 139 ~G~~~~~-vdG-~d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
||+.++. +.- .+++++.+++++|+ ..++|+||++.+
T Consensus 1031 ~G~~~va~~~v~~~~~~l~~al~eAl-~~~GP~lI~v~~ 1068 (1231)
T 2c42_A 1031 YGYVYVATVSMGYSKQQFLKVLKEAE-SFPGPSLVIAYA 1068 (1231)
T ss_dssp TSSSEEEEECTTTCHHHHHHHHHHHH-HSSSCEEEEEEC
T ss_pred CCCCEEEEEeccCCHHHHHHHHHHHH-hcCCCEEEEEee
Confidence 9999985 433 48999999999998 578999999864
No 47
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=96.13 E-value=0.041 Score=48.65 Aligned_cols=101 Identities=14% Similarity=0.047 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHH-HHHHHhhhcCCCcEEEEEecCCCc-cccCcccccccHHHHH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIW-EALHFASYYKLDNLCVIFDINRLG-QSEPTSLQHQTEVYRK 134 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~-eal~~a~~~~lp~liiV~~nn~~~-~~~~~~~~~~~~~~~~ 134 (176)
..++.|.|+|+.- -++++.+.++... ..+ +-++.++..++|+ +++..+.++. ..+++.. +..|+.
T Consensus 372 ~~~~~a~G~A~~G------~rp~~~~~~~F~~---~a~dqi~~~~a~~~~pv-v~~~~~~g~~g~~G~tH~--~~~d~~- 438 (621)
T 2o1s_A 372 HAVTFAAGLAIGG------YKPIVAIYSTFLQ---RAYDQVLHDVAIQKLPV-LFAIDRAGIVGADGQTHQ--GAFDLS- 438 (621)
T ss_dssp HHHHHHHHHHHTT------CEEEEEEETTGGG---GGHHHHHHTTTTTTCCC-EEEEESCBCCCTTCGGGC--BCSHHH-
T ss_pred HHHHHHHHHHHCC------CEEEEEehHhHHH---HHHHHHHHHHHhcCCCE-EEEEECCccCCCCCCccC--chHHHH-
Confidence 3456788888853 3678888877542 344 3466788899995 4555666652 1222222 234555
Q ss_pred HHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 135 RLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 135 ~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
+++.. |+.++.- .|+.|+...++.|++..++|++|-
T Consensus 439 ~~~~iP~l~v~~P--~d~~e~~~~l~~a~~~~~~Pv~i~ 475 (621)
T 2o1s_A 439 YLRCIPEMVIMTP--SDENECRQMLYTGYHYNDGPSAVR 475 (621)
T ss_dssp HTTTSTTCEEECC--SSHHHHHHHHHHHHHCCSSCEEEE
T ss_pred HHhcCCCCEEEec--CCHHHHHHHHHHHHHcCCCCEEEE
Confidence 34444 8988865 389999999999986558998874
No 48
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=95.42 E-value=0.13 Score=45.90 Aligned_cols=102 Identities=13% Similarity=0.054 Sum_probs=65.3
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCcc--ccCcccccccHHHHHH
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQ--SEPTSLQHQTEVYRKR 135 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~--~~~~~~~~~~~~~~~~ 135 (176)
.+++|.|+|+.-. -++++......+. ...+++..++..++|++++ +...+++. .+++. .+..+++-+
T Consensus 414 ~v~~a~GlA~~gG-----~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~-~t~~g~~~G~dG~tH--q~~edla~l 482 (669)
T 2r8o_A 414 MTAIANGISLHGG-----FLPYTSTFLMFVE---YARNAVRMAALMKQRQVMV-YTHDSIGLGEDGPTH--QPVEQVASL 482 (669)
T ss_dssp HHHHHHHHHHHSS-----CEEEEEEEGGGGG---TTHHHHHHHHHTTCCCEEE-EECCSGGGCTTCTTT--CCSSHHHHH
T ss_pred HHHHHHHHHHcCC-----CeEEEeehHHHHH---HHHHHHHHHHhcCCCEEEE-EeCCCcCcCCCCCcc--CCHHHHHHh
Confidence 3567888887521 2466666644433 3456788889999995544 55455543 33333 234555544
Q ss_pred HhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
..--|+.++.= .|..|+..+++.|++..++|++|-
T Consensus 483 r~iP~l~V~~P--ad~~E~~~~l~~a~~~~~~Pv~i~ 517 (669)
T 2r8o_A 483 RVTPNMSTWRP--CDQVESAVAWKYGVERQDGPTALI 517 (669)
T ss_dssp HTSTTCEEECC--SSHHHHHHHHHHHHHCSSSCEEEE
T ss_pred cCCCCCEEEec--CCHHHHHHHHHHHHHhCCCcEEEE
Confidence 33348877754 489999999999996558998874
No 49
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=95.37 E-value=0.16 Score=44.95 Aligned_cols=101 Identities=11% Similarity=0.012 Sum_probs=65.8
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCcc--ccCcccccccHHHHHH
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQ--SEPTSLQHQTEVYRKR 135 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~--~~~~~~~~~~~~~~~~ 135 (176)
.++.|.|+|++-. -+++++..++... ..++.+..++..++|+ +++.+..+++. .++++ .+..+++-+
T Consensus 367 ~v~~a~G~A~~G~-----~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v-~~v~~~~g~~~G~dG~tH--~~~ed~a~l 435 (616)
T 3mos_A 367 MVSIAVGCATRNR-----TVPFCSTFAAFFT---RAFDQIRMAAISESNI-NLCGSHCGVSIGEDGPSQ--MALEDLAMF 435 (616)
T ss_dssp HHHHHHHHHGGGC-----CEEEEEEEGGGGG---GGHHHHHHHHHTTCCE-EEEEESBSGGGCTTCGGG--CBSSHHHHH
T ss_pred HHHHHHHHHHcCC-----CCEEEEehHHHHH---HHHHHHHHHHHhCCCe-EEEEECCCccccCCCCcc--cCHHHHHHh
Confidence 4567788887532 1456678888864 3567788888889994 55666666533 33322 233455544
Q ss_pred HhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
..--|+.++.= .|+.|+..+++.|+ ..++|++|.
T Consensus 436 ~~iP~l~V~~P--~d~~e~~~~l~~a~-~~~gp~~ir 469 (616)
T 3mos_A 436 RSVPTSTVFYP--SDGVATEKAVELAA-NTKGICFIR 469 (616)
T ss_dssp HTSTTEEEECC--CSHHHHHHHHHHHH-TCCSEEEEE
T ss_pred cCCCCCEEEec--CCHHHHHHHHHHHH-hcCCCEEEE
Confidence 44447776643 48999999999997 467897764
No 50
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=95.35 E-value=0.11 Score=46.42 Aligned_cols=102 Identities=9% Similarity=-0.044 Sum_probs=65.2
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCc--cccCcccccccHHHHHH
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLG--QSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~--~~~~~~~~~~~~~~~~~ 135 (176)
.++.|.|+|+.-. -++++.+..+-.. ...+.+..++..++|++ ++....+.+ ..+++. ++..+++-+
T Consensus 415 ~v~~a~GlA~~gG-----~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv-~~~t~~g~g~G~dG~TH--q~~ed~a~l 483 (663)
T 3kom_A 415 MAAIMNGLSLYGG-----IKPYGGTFLVFSD---YSRNAIRMSALMKQPVV-HVMSHDSIGLGEDGPTH--QPIEHVPSL 483 (663)
T ss_dssp HHHHHHHHHHHSS-----CEEEEEEEGGGHH---HHHHHHHHHHHTTCCCE-EEEECCSGGGCTTCTTT--CCSSHHHHH
T ss_pred HHHHHHHHHHcCC-----CEEEEEehHHHHH---HHHHHHHHHHhcCCCEE-EEEeCCccccCCCCCCc--CCHHHHHHH
Confidence 4567889888522 2567776654432 34567878889999954 444444443 334433 233455544
Q ss_pred HhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
..--|+.++.= .|+.|+..+++.|+++.++|++|-
T Consensus 484 r~iPnl~V~~P--ad~~e~~~~l~~A~~~~~~Pv~ir 518 (663)
T 3kom_A 484 RLIPNLSVWRP--ADTIETMIAWKEAVKSKDTPSVMV 518 (663)
T ss_dssp HTSTTCEEECC--CSHHHHHHHHHHHHHCSSCCEEEE
T ss_pred hcCCCcEEEee--CCHHHHHHHHHHHHHhCCCCEEEE
Confidence 44448877744 389999999999986468998874
No 51
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=95.22 E-value=0.14 Score=45.64 Aligned_cols=102 Identities=11% Similarity=0.019 Sum_probs=65.3
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCcc--ccCcccccccHHHHHH
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQ--SEPTSLQHQTEVYRKR 135 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~--~~~~~~~~~~~~~~~~ 135 (176)
.+++|.|+|+.-. -++++....-.+. ..++++..++..++|++ +++...+.+. .+++. .+..|++-+
T Consensus 409 ~~~~a~GlA~~Gg-----~~P~~~t~~~F~~---~~~~air~~a~~~lpvv-~~~t~~g~g~G~dG~tH--q~~edla~l 477 (651)
T 2e6k_A 409 MGAILNGLNLHGG-----YRAYGGTFLVFSD---YMRPAIRLAALMGVPTV-FVFTHDSIALGEDGPTH--QPVEHLMSL 477 (651)
T ss_dssp HHHHHHHHHHHSS-----CEEEEEEEGGGGG---GSHHHHHHHHHHTCCCE-EEEECCSGGGCTTCTTT--CCSSHHHHH
T ss_pred HHHHHHHHHHcCC-----CEEEEEeHHHHHH---HHHHHHHHHHhcCCCEE-EEEECCccccCCCcCcc--ccHHHHHHh
Confidence 3457888887531 2466665532221 34567888899999964 5555566543 33333 334566544
Q ss_pred HhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
..--|+.++.- .|..|+..+++.|++..++|++|-
T Consensus 478 r~iP~l~V~~P--ad~~E~~~~l~~A~~~~~~Pv~i~ 512 (651)
T 2e6k_A 478 RAMPNLFVIRP--ADAYETFYAWLVALRRKEGPTALV 512 (651)
T ss_dssp HTSTTCEEECC--SSHHHHHHHHHHHHHCCSSCEEEE
T ss_pred cCCCCcEEEec--CCHHHHHHHHHHHHHcCCCCEEEE
Confidence 33348887754 389999999999996557898874
No 52
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=94.98 E-value=0.17 Score=41.40 Aligned_cols=99 Identities=8% Similarity=-0.069 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEE-ECCCccCCchHHHHHHHh-h--------hcCCCcEEEEEecCCCccccCcccc
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCL-VGDGESAEGSIWEALHFA-S--------YYKLDNLCVIFDINRLGQSEPTSLQ 126 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~-~GDG~~~~G~~~eal~~a-~--------~~~lp~liiV~~nn~~~~~~~~~~~ 126 (176)
..++.|.|+|+.- -++++.+ .+|.. + ..++.+... + ..++|++++ ......+-.+++..
T Consensus 73 ~~v~~a~G~A~~G------~rp~~~~~f~~F~-~--~a~dqi~~~~a~~~y~~~g~~~~pvv~~-~~~G~~g~~G~tHs- 141 (341)
T 2ozl_B 73 GFAGIAVGAAMAG------LRPICEFMTFNFS-M--QAIDQVINSAAKTYYMSGGLQPVPIVFR-GPNGASAGVAAQHS- 141 (341)
T ss_dssp HHHHHHHHHHHTT------CEEEEECSSGGGG-G--GGHHHHHTTTTTHHHHTTSSCCCCCEEE-EECSCCSSCCGGGC-
T ss_pred HHHHHHHHHHHCC------CEEEEEeccHHHH-H--HHHHHHHHHHHHHHhhccccCCCCEEEE-EcCcCCCCCCcchh-
Confidence 4466788888763 2455553 77776 3 355556543 3 278995544 44433232333331
Q ss_pred cccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 127 HQTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 127 ~~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
. ..+ .+++.. |+.++.- .|+.|....++.|++ .++|++|-
T Consensus 142 ~-~~e--a~l~~iP~l~V~~P--sd~~e~~~~l~~a~~-~~~Pv~i~ 182 (341)
T 2ozl_B 142 Q-CFA--AWYGHCPGLKVVSP--WNSEDAKGLIKSAIR-DNNPVVVL 182 (341)
T ss_dssp C-CCH--HHHHTSTTCEEECC--CSHHHHHHHHHHHHH-SSSCEEEE
T ss_pred h-HHH--HHhccCCCCEEEEe--CCHHHHHHHHHHHHh-cCCCEEEE
Confidence 1 223 344444 8888765 489999999999985 58998864
No 53
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=94.82 E-value=0.035 Score=46.46 Aligned_cols=106 Identities=13% Similarity=0.101 Sum_probs=55.7
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~ 135 (176)
..++.+|+|++++-. +.++...|.|-.. ..+.|..++..++|+++++.+..+.+.........+ +.+..+
T Consensus 74 ~~a~~~a~Gaa~aG~------r~~~~ts~~G~~~---~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~s-d~~~~~ 143 (395)
T 1yd7_A 74 IASIAAAIGASWAGA------KAMTATSGPGFSL---MQENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQG-DIMQAI 143 (395)
T ss_dssp HHHHHHHHHHHHTTC------CEEEEEETTHHHH---HTTTCC----CCCCEEEEEEC----------------------
T ss_pred HHHHHHHHHHHHhCC------cEEEEeCchHHHH---HHHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccchh-HHHHHH
Confidence 355677888888643 4667777877654 345677778889997766666544432111111110 111112
Q ss_pred -Hh--hcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEe
Q psy786 136 -LD--AFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQR 173 (176)
Q Consensus 136 -a~--a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~ 173 (176)
+. .+|+.++... +++|....+..|++ +.+.|+++..
T Consensus 144 ~~~~g~~g~~vl~p~--~~qea~~l~~~A~~lA~~~~~PVi~~~ 185 (395)
T 1yd7_A 144 WGTHGDHSLIVLSPS--TVQEAFDFTIRAFNLSEKYRTPVILLT 185 (395)
T ss_dssp -----CCCCEEECCC--SHHHHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred hccCCCcceEEEeCC--CHHHHHHHHHHHHHHHHHHCCCEEEEc
Confidence 22 3568877664 89998888888874 3468988754
No 54
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=94.81 E-value=0.096 Score=42.70 Aligned_cols=98 Identities=9% Similarity=-0.037 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEE-ECCCccCCchHHHHHH-Hhhh--------cCCCcEEEEEecCCCccccCcccc
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCL-VGDGESAEGSIWEALH-FASY--------YKLDNLCVIFDINRLGQSEPTSLQ 126 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~-~GDG~~~~G~~~eal~-~a~~--------~~lp~liiV~~nn~~~~~~~~~~~ 126 (176)
..++.|.|+|++-. ++++.+ .+++. + ..++.+. .++. +++|++++ ..+.+ +..+++..
T Consensus 63 ~~~~~a~G~A~~G~------rp~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~~~~~~pvv~~-~~~~g-~~~G~th~- 130 (338)
T 1qs0_B 63 GIVGTAVGMGAYGL------RPVVEIQFADYF-Y--PASDQIVSEMARLRYRSAGEFIAPLTLR-MPCGG-GIYGGQTH- 130 (338)
T ss_dssp HHHHHHHHHHHHTC------EEEEECSCGGGC-G--GGHHHHHTTTTTHHHHTTTSSCCCCEEE-EEECC-SSSCCSSS-
T ss_pred HHHHHHHHHHhCCC------EEEEEeccHhHH-H--HHHHHHHHHHHHHhhhcCCCCCCCEEEE-EeCCC-CCCCcccc-
Confidence 45667888888632 455544 77776 3 3556554 3442 35996554 44443 33333222
Q ss_pred cccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786 127 HQTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI 171 (176)
Q Consensus 127 ~~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI 171 (176)
+..|+. ++++. |+.++.- .|+.|....++.|++ .++|++|
T Consensus 131 -s~~d~~-~l~~iP~l~V~~P--sd~~e~~~~l~~A~~-~~~Pv~i 171 (338)
T 1qs0_B 131 -SQSPEA-MFTQVCGLRTVMP--SNPYDAKGLLIASIE-CDDPVIF 171 (338)
T ss_dssp -SCCCHH-HHTTSTTCEEECC--CSHHHHHHHHHHHHH-SSSCEEE
T ss_pred -cccHHH-HHhcCCCCEEEee--CCHHHHHHHHHHHHh-cCCcEEE
Confidence 223443 44555 8988865 389999999999985 4899987
No 55
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=94.69 E-value=0.16 Score=45.35 Aligned_cols=102 Identities=9% Similarity=-0.007 Sum_probs=64.3
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCc--cccCcccccccHHHHHHH
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLG--QSEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~--~~~~~~~~~~~~~~~~~a 136 (176)
+++|.|+|+.-. .-++++.+....+. ..++++..++..++|++++ ....+.+ ..+++. .+..+++-+.
T Consensus 427 v~~a~GlA~~G~----~~~P~~~t~~~F~~---~~~~~ir~~a~~~lpvv~~-~t~~g~g~G~dG~tH--q~~edla~lr 496 (675)
T 1itz_A 427 GAICNGIALHSP----GFVPYCATFFVFTD---YMRGAMRISALSEAGVIYV-MTHDSIGLGEDGPTH--QPIEHLVSFR 496 (675)
T ss_dssp HHHHHHHHTTCT----TCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEE-EECCSGGGCTTCTTT--CCSSHHHHHH
T ss_pred HHHHHHHHhcCC----CCEEEEEEHHHHHH---HHHHHHHHHHhcCCCEEEE-EECCccccCCCCCCc--CcHHHHHHhc
Confidence 457778876530 13567776644442 3567788899999995544 4444444 333333 2345555443
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
.--|+.++.= .|..|+..+++.|++..++|++|-
T Consensus 497 ~iP~l~V~~P--ad~~e~~~~l~~a~~~~~~Pv~i~ 530 (675)
T 1itz_A 497 AMPNILMLRP--ADGNETAGAYKVAVLNRKRPSILA 530 (675)
T ss_dssp SSSSCEEECC--CSHHHHHHHHHHHHHCTTSCEEEE
T ss_pred cCCCeEEEEC--CCHHHHHHHHHHHHHhCCCcEEEE
Confidence 3347776643 489999999999996558998873
No 56
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=94.56 E-value=0.28 Score=43.98 Aligned_cols=102 Identities=13% Similarity=0.025 Sum_probs=62.7
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCc--cccCcccccccHHHHHH
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLG--QSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~--~~~~~~~~~~~~~~~~~ 135 (176)
.++.|.|+|+.-- -++++..+.--+. ....++..++..++|+ ++++...+++ ..+++. .+..+++-+
T Consensus 439 mv~~A~GlA~~gG-----~~P~~~tf~~Fs~---f~~~air~~al~~lpV-v~v~~~~gigvG~dG~TH--q~ied~a~l 507 (690)
T 3m49_A 439 MGAAMNGIALHGG-----LKTYGGTFFVFSD---YLRPAIRLAALMQLPV-TYVFTHDSIAVGEDGPTH--EPIEQLAAL 507 (690)
T ss_dssp HHHHHHHHHHHSS-----CEEEEEEEGGGGG---GGHHHHHHHHHHTCCC-EEEEECCSGGGCTTCGGG--CCSSHHHHH
T ss_pred HHHHHHHHHHcCC-----CEEEEEecHHHHH---HHHHHHHHHHhcCCCc-EEEEECCCcCCCCCCCcc--CCHHHHHHH
Confidence 3567888888521 2456654322221 1234577788899995 5556655553 344433 233455543
Q ss_pred HhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
..--|+.++.= .|+.|+..+++.|++..++|++|-
T Consensus 508 r~iPnl~V~~P--ad~~E~~~~l~~Ai~~~~~Pv~ir 542 (690)
T 3m49_A 508 RAMPNVSVIRP--ADGNESVAAWRLALESTNKPTALV 542 (690)
T ss_dssp HTSTTCEEECC--SSHHHHHHHHHHHHHCSSSCEEEE
T ss_pred hcCCCCEEEee--CCHHHHHHHHHHHHHcCCCCEEEE
Confidence 33348887743 389999999999986557898874
No 57
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=94.48 E-value=0.13 Score=45.50 Aligned_cols=100 Identities=18% Similarity=0.137 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHH-HHHHHhhhcCCCcEEEEEecCCC-ccccCcccccccHHHHH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIW-EALHFASYYKLDNLCVIFDINRL-GQSEPTSLQHQTEVYRK 134 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~-eal~~a~~~~lp~liiV~~nn~~-~~~~~~~~~~~~~~~~~ 134 (176)
..++.|.|+|++- -++++.+..+.. + ..+ +-++.++..++|++ ++..+.++ +-.+++... ..|++
T Consensus 375 ~~~~~a~G~A~~G------~rp~~~~~~~F~--~-~a~dqi~~~~a~~~~pvv-~~~~~~g~~g~dG~tH~~--~~d~a- 441 (629)
T 2o1x_A 375 VAVTTAAGMALQG------MRPVVAIYSTFL--Q-RAYDQVLHDVAIEHLNVT-FCIDRAGIVGADGATHNG--VFDLS- 441 (629)
T ss_dssp HHHHHHHHHHHTT------CEEEEEEEHHHH--G-GGHHHHHHTTTTTTCCCE-EEEESBBCCCTTCTTTCB--CSHHH-
T ss_pred HHHHHHHHHHHcC------CEEEEEecHHHH--H-HHHHHHHHHHhhcCCCEE-EEEECCccCCCCCcccCc--cHHHH-
Confidence 3455788888753 356777776643 2 334 33567888999954 44565554 222332222 24544
Q ss_pred HHhh-cCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 135 RLDA-FGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 135 ~a~a-~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
+++. -|+.++.- .|+.|+...++.|++ .++|++|-
T Consensus 442 ~~r~iP~l~v~~P--~d~~e~~~~~~~a~~-~~~Pv~i~ 477 (629)
T 2o1x_A 442 FLRSIPGVRIGLP--KDAAELRGMLKYAQT-HDGPFAIR 477 (629)
T ss_dssp HTTTSTTCEEECC--SSHHHHHHHHHHHHH-SSSCEEEE
T ss_pred HHHccCCcEEEec--CCHHHHHHHHHHHHh-CCCCEEEE
Confidence 4444 48887755 389999999999985 57898874
No 58
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=94.48 E-value=0.19 Score=44.89 Aligned_cols=101 Identities=12% Similarity=0.033 Sum_probs=63.0
Q ss_pred HHHHHHHHHhchhcCCCcc-eEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCc--cccCcccccccHHHHHH
Q psy786 59 LSVAAGMAYVGKYFDKASY-RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLG--QSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~-~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~--~~~~~~~~~~~~~~~~~ 135 (176)
++.|.|+|+.-. -+ +++....+-+. ..++++..++..++|+++ ++...+.+ ..+++. .+..+++-+
T Consensus 422 vg~a~GlA~~Gg-----~~~P~~~~f~~F~~---~~~~air~~a~~~lpvv~-v~t~~g~g~G~dG~tH--q~~edla~l 490 (680)
T 1gpu_A 422 GAIMNGISAFGA-----NYKPYGGTFLNFVS---YAAGAVRLSALSGHPVIW-VATHDSIGVGEDGPTH--QPIETLAHF 490 (680)
T ss_dssp HHHHHHHHHHCT-----TCEEEEEEEHHHHG---GGHHHHHHHHHHTCCCEE-EEECCSGGGCTTCTTT--CCSSHHHHH
T ss_pred HHHHHHHHhcCC-----CceEEEeehHHHHH---HHHHHHHHHHhcCCCEEE-EEeCCccccCCCCCcc--CCHHHHHHh
Confidence 457888887521 24 56655533322 346678888899999554 45444544 334443 234555544
Q ss_pred HhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
..--|+.++.= .|+.|+..+++.|++..++|++|-
T Consensus 491 r~iP~l~V~~P--ad~~e~~~~l~~A~~~~~~Pv~i~ 525 (680)
T 1gpu_A 491 RSLPNIQVWRP--ADGNEVSAAYKNSLESKHTPSIIA 525 (680)
T ss_dssp HTSSSCEEECC--CSHHHHHHHHHHHHHCSSCCEEEE
T ss_pred cCCCCCEEEec--CCHHHHHHHHHHHHHhCCCcEEEE
Confidence 43348877643 489999999999996558998874
No 59
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=94.29 E-value=0.28 Score=43.59 Aligned_cols=101 Identities=18% Similarity=0.053 Sum_probs=64.5
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCc--cccCcccccccHHHHHH
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLG--QSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~--~~~~~~~~~~~~~~~~~ 135 (176)
.++.|.|+|+.-- -++++.+..+ |.+ ...+.+..++..++|+ +++....+.+ ..+++. .+..+++-+
T Consensus 394 ~v~~a~GlA~~gG-----~~P~~~~f~~--F~~-~~~~~ir~~a~~~~pv-~~~~t~~g~g~G~dG~TH--q~~ed~a~l 462 (632)
T 3l84_A 394 MAAINNAFARYGI-----FLPFSATFFI--FSE-YLKPAARIAALMKIKH-FFIFTHDSIGVGEDGPTH--QPIEQLSTF 462 (632)
T ss_dssp HHHHHHHHHHHSS-----CEEEEEEEGG--GHH-HHHHHHHHHHHHTCCC-EEEEECCSGGGCTTCGGG--SCSSHHHHH
T ss_pred HHHHHHHHHHcCC-----CEEEEEecHH--HHH-HHHHHHHHHhccCCCE-EEEEECCCcCCCCCCCCC--CCHhHHHHH
Confidence 3567888887621 2467776543 332 3566777788899995 4555444443 334433 233455544
Q ss_pred HhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
..--|+.++.= .|+.|+..+++.|++ .++|++|-
T Consensus 463 r~iP~l~V~~P--~d~~e~~~~l~~A~~-~~~Pv~ir 496 (632)
T 3l84_A 463 RAMPNFLTFRP--ADGVENVKAWQIALN-ADIPSAFV 496 (632)
T ss_dssp HHSSSCEEECC--SSHHHHHHHHHHHHH-CSSCEEEE
T ss_pred hcCCCCEEEec--CCHHHHHHHHHHHHh-CCCCEEEE
Confidence 33348887754 389999999999985 78998774
No 60
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=94.27 E-value=0.37 Score=43.02 Aligned_cols=101 Identities=9% Similarity=-0.013 Sum_probs=63.9
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCc--cccCcccccccHHHHHHH
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLG--QSEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~--~~~~~~~~~~~~~~~~~a 136 (176)
+++|.|+|+.-. -++++.+...-+. ...+++..++..++|++ ++....+++ ..+++. .+..+++-+.
T Consensus 415 ~~~a~GlA~~GG-----~~P~~~~~~~F~~---~~~~~ir~~a~~~~pvv-~~~t~~g~g~G~dG~tH--q~~edla~lr 483 (673)
T 1r9j_A 415 CAILNGLDAHDG-----IIPFGGTFLNFIG---YALGAVRLAAISHHRVI-YVATHDSIGVGEDGPTH--QPVELVAALR 483 (673)
T ss_dssp HHHHHHHHHHSS-----CEEEEEEEGGGGG---GGHHHHHHHHHHTCCCE-EEEECCSGGGCTTCTTT--CCSSHHHHHH
T ss_pred HHHHHHHHhcCC-----CEEEEEehHHHHH---HHHHHHHHHHhcCCCEE-EEEECCccCcCCCCccc--CCHHHHHHHc
Confidence 457788877521 2466666544332 35667888899999954 445444444 334433 2344555443
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
.--|+.++.= .|..|+..+++.|++..++|++|-
T Consensus 484 ~iP~l~V~~P--ad~~e~~~~l~~a~~~~~~Pv~i~ 517 (673)
T 1r9j_A 484 AMPNLQVIRP--SDQTETSGAWAVALSSIHTPTVLC 517 (673)
T ss_dssp HSTTCEEECC--SSHHHHHHHHHHHHHCTTCCEEEE
T ss_pred CCCCCEEEeC--CCHHHHHHHHHHHHHhCCCeEEEE
Confidence 3348776643 489999999999996558998874
No 61
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=94.23 E-value=0.1 Score=45.60 Aligned_cols=105 Identities=15% Similarity=0.052 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a 136 (176)
.+.-+|.|.|.+... -..+++..|=|..+ ..-++..|...++|+|++.-+-....+ +. ......|...++
T Consensus 61 ~Aa~~A~Gyar~tg~----p~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~-g~--~~~Q~~d~~~~~ 130 (590)
T 1ybh_A 61 GGVFAAEGYARSSGK----PGICIATSGPGATN---LVSGLADALLDSVPLVAITGQVPRRMI-GT--DAFQETPIVEVT 130 (590)
T ss_dssp HHHHHHHHHHHHHSS----CEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGT-TT--TCTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHCC----CEEEEeccCchHHH---HHHHHHHHHhhCCCEEEEeCcCCcccc-CC--CcccccCHHHHH
Confidence 334477888876531 23455555666665 345788999999996666555332221 11 111123667888
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR 173 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~ 173 (176)
+.+--..+++. +++++.+.+++|+.. ..||+.|++
T Consensus 131 ~~~~k~~~~v~--~~~~i~~~l~~A~~~a~~~~~GPV~l~i 169 (590)
T 1ybh_A 131 RSITKHNYLVM--DVEDIPRIIEEAFFLATSGRPGPVLVDV 169 (590)
T ss_dssp GGGSSEEEECC--CGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred HHHhCeEEecC--CHHHHHHHHHHHHHHHhhCCCceEEEEe
Confidence 88866677775 777787777777752 248999876
No 62
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=93.98 E-value=0.27 Score=39.75 Aligned_cols=98 Identities=10% Similarity=-0.041 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEE-ECCCccCCchHHHHHH-Hhhh--------cCCCcEEEEEecCCCccccCcccc
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCL-VGDGESAEGSIWEALH-FASY--------YKLDNLCVIFDINRLGQSEPTSLQ 126 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~-~GDG~~~~G~~~eal~-~a~~--------~~lp~liiV~~nn~~~~~~~~~~~ 126 (176)
..++.|.|+|++- -++++.+ .++.. + ..++.+. .++. .++|++++ .+ .++.........
T Consensus 61 ~~v~~a~G~A~~G------~rp~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~-~~-~g~~~~~g~~hs 129 (324)
T 1w85_B 61 GIGGLAIGLALQG------FRPVPEIQFFGFV-Y--EVMDSICGQMARIRYRTGGRYHMPITIR-SP-FGGGVHTPELHS 129 (324)
T ss_dssp HHHHHHHHHHHTT------CEEEEBCSSGGGG-G--GTHHHHHTTGGGHHHHTTTSSCCCCEEE-EE-ECSSSCCCTTSS
T ss_pred HHHHHHHHHHhCC------CEEEEEecchhHH-H--HHHHHHHHHHHHHhhhccCCCcCCEEEE-Ee-ccCCCCCCCccc
Confidence 4566788888763 2445544 77765 3 3455564 2443 78995444 44 344332221111
Q ss_pred cccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786 127 HQTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI 171 (176)
Q Consensus 127 ~~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI 171 (176)
..+. .+.++. |+.++.- .|+.|....++.|++ .++|++|
T Consensus 130 --~~~~-a~~~~iP~l~V~~P--sd~~e~~~~l~~a~~-~~~Pv~i 169 (324)
T 1w85_B 130 --DSLE-GLVAQQPGLKVVIP--STPYDAKGLLISAIR-DNDPVIF 169 (324)
T ss_dssp --CCCH-HHHTTSTTCEEECC--SSHHHHHHHHHHHHH-SSSCEEE
T ss_pred --ccHH-HHHccCCCCEEEee--CCHHHHHHHHHHHHH-cCCCEEE
Confidence 1223 455554 7777754 489999999999984 7799887
No 63
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=93.94 E-value=0.38 Score=39.77 Aligned_cols=98 Identities=13% Similarity=-0.062 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEE-ECCCccCCchHHHHHHH-hhhc--------CCCcEEEEEecCCCccccCcccc
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCL-VGDGESAEGSIWEALHF-ASYY--------KLDNLCVIFDINRLGQSEPTSLQ 126 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~-~GDG~~~~G~~~eal~~-a~~~--------~lp~liiV~~nn~~~~~~~~~~~ 126 (176)
..++.|.|+|+.- -++++.+ .+|... ..++.+.. ++.. ++|++++ ....+..-... .
T Consensus 109 ~~v~~a~G~A~~G------~rpv~~~tf~~Fl~---~a~Dqi~~~~a~~~~~~~g~~~~pvv~~-~~~gg~~g~g~---~ 175 (369)
T 1ik6_A 109 GILGFAMGMAMAG------LKPVAEIQFVDFIW---LGADELLNHIAKLRYRSGGNYKAPLVVR-TPVGSGTRGGL---Y 175 (369)
T ss_dssp HHHHHHHHHHHTT------CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEE-EEECC----------
T ss_pred HHHHHHHHHHHCC------CeeEEEecchhHHH---HHHHHHHHHHHHHHHhhCCCCCCCEEEE-EeCCCCCCCCc---c
Confidence 3466788888753 2456654 888663 34454544 4433 9995544 44444221221 1
Q ss_pred cccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786 127 HQTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI 171 (176)
Q Consensus 127 ~~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI 171 (176)
....+ ..++++. |+.++.- .|+.|....++.|++ .++|++|
T Consensus 176 hs~~~-~a~l~~iPnl~V~~P--sd~~e~~~ll~~A~~-~~~Pv~i 217 (369)
T 1ik6_A 176 HSNSP-EAIFVHTPGLVVVMP--STPYNAKGLLKAAIR-GDDPVVF 217 (369)
T ss_dssp ----H-HHHHHTCTTCEEECC--CSHHHHHHHHHHHHH-SSSCEEE
T ss_pred ccccH-HHHHcCCCCcEEEec--CCHHHHHHHHHHHHh-CCCCEEE
Confidence 11223 3455555 8888765 489999999999985 7899887
No 64
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=93.61 E-value=0.22 Score=43.32 Aligned_cols=104 Identities=14% Similarity=0.072 Sum_probs=61.8
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
+.-+|.|.|.+... -..+++..|=|..+ ..-++..|..-++|+|++.-+-....+.. ......|...+++
T Consensus 60 Aa~~A~Gyar~tg~----p~v~~~TsGpG~~N---~~~~l~~A~~~~vPll~itg~~~~~~~~~---~~~Q~~d~~~~~~ 129 (566)
T 1ozh_A 60 AAFMAAAVGRITGK----AGVALVTSGPGCSN---LITGMATANSEGDPVVALGGAVKRADKAK---QVHQSMDTVAMFS 129 (566)
T ss_dssp HHHHHHHHHHHHSS----CEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTC---------CCCHHHHHG
T ss_pred HHHHHHHHHHHHCC----CEEEEEccChHHHH---HHHHHHHHHhcCCCEEEEeCCCccccCCC---CcccccCHHHHHH
Confidence 34467888776531 12344444666666 34578899999999666655543322221 1111246678888
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEe
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQR 173 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~ 173 (176)
.+--..+++. +++++.+.+++|+. ...||+.|++
T Consensus 130 ~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~r~GPV~l~i 167 (566)
T 1ozh_A 130 PVTKYAIEVT--APDALAEVVSNAFRAAEQGRPGSAFVSL 167 (566)
T ss_dssp GGCSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred HHhheEEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 8877677774 66666555555543 2358999986
No 65
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=93.49 E-value=0.24 Score=43.00 Aligned_cols=104 Identities=14% Similarity=-0.013 Sum_probs=61.8
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccccccc-HHHHHHH
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQT-EVYRKRL 136 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~-~~~~~~a 136 (176)
+.-+|.|.|.+... -..+++..|=|..+ ..-++..|...++|+|++.-+-....+.. .. ... .|...++
T Consensus 53 Aa~~A~Gyar~tg~----p~v~~~TsGpG~~N---~~~~l~~A~~~~~Pll~itg~~~~~~~~~-~~--~Q~~~d~~~~~ 122 (563)
T 2uz1_A 53 AGHAAEGYARAGAK----LGVALVTAGGGFTN---AVTPIANAWLDRTPVLFLTGSGALRDDET-NT--LQAGIDQVAMA 122 (563)
T ss_dssp HHHHHHHHHHHHTS----CEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTS-CC--TTCCCCHHHHH
T ss_pred HHHHHHHHHHHhCC----CEEEEEccCccHHH---HHHHHHHHHhcCCCEEEEeCCCCcccCCc-hh--hhhhccHHHHh
Confidence 34467788776531 12344444556665 34578889999999666655533322211 11 112 4667888
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEe
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQR 173 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~ 173 (176)
+.+--..+++. +++++.+.+++|+. ...||+.|++
T Consensus 123 ~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~i 161 (563)
T 2uz1_A 123 APITKWAHRVM--ATEHIPRLVMQAIRAALSAPRGPVLLDL 161 (563)
T ss_dssp GGGCSEEEECC--CGGGHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred hhhhceEEEcC--CHHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 88876677774 66655555555543 2359999986
No 66
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=93.44 E-value=0.42 Score=41.45 Aligned_cols=106 Identities=12% Similarity=-0.008 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc---cc--ccccHHH
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT---SL--QHQTEVY 132 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~---~~--~~~~~~~ 132 (176)
+.-+|.|.|.+.. -..+++..|=|..+ ..-++..|...++|+|++.-+-......... +. .....|.
T Consensus 53 Aa~~A~Gyar~tg-----~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~ 124 (568)
T 2wvg_A 53 CGFSAEGYARAKG-----AAAAVVTYSVGALS---AFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQ 124 (568)
T ss_dssp HHHHHHHHHHHHS-----CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHH
T ss_pred HHHHHHHHHHhhC-----CeEEEEeCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHH
Confidence 3446777776542 23455556777665 4557888999999966665553332221110 00 0011367
Q ss_pred HHHHhhcCceEEEecCCCHHH----HHHHHHHHHhhCCCcEEEEee
Q psy786 133 RKRLDAFGFNAVVVDGHDVEH----LVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 133 ~~~a~a~G~~~~~vdG~d~~~----l~~al~~a~~~~~~P~lI~~~ 174 (176)
.++++.+--..+++. ++++ +.+|++.|... ++|+.|++-
T Consensus 125 ~~~~~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~-~GPV~l~iP 167 (568)
T 2wvg_A 125 LEMAKNITAAAEAIY--TPEEAPAKIDHVIKTALRE-KKPVYLEIA 167 (568)
T ss_dssp HHHHTTSCSCEEEEC--SGGGHHHHHHHHHHHHHHH-TCCEEEEEE
T ss_pred HHHHHhhEeEEEEeC--CHHHHHHHHHHHHHHHHhC-CCCEEEEec
Confidence 888888866677774 5544 55555555533 599999863
No 67
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=93.29 E-value=0.32 Score=39.72 Aligned_cols=98 Identities=9% Similarity=-0.024 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEE-ECCCccCCchHHHHHH-Hhhhc--------CC-CcEEEEEecCCCccccCccc
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCL-VGDGESAEGSIWEALH-FASYY--------KL-DNLCVIFDINRLGQSEPTSL 125 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~-~GDG~~~~G~~~eal~-~a~~~--------~l-p~liiV~~nn~~~~~~~~~~ 125 (176)
..++.|.|+|++- -++++.+ .+++.. ..++.+. .++.+ ++ |++ ++....+ ...+++.
T Consensus 78 ~~v~~a~G~A~~G------~rp~~~~tf~~F~~---~a~dqi~~~~a~~~~~~~g~~~~~pvv-~~~~~~g-~~~G~th- 145 (342)
T 2bfd_B 78 GIVGFGIGIAVTG------ATAIAEIQFADYIF---PAFDQIVNEAAKYRYRSGDLFNCGSLT-IRSPWGC-VGHGALY- 145 (342)
T ss_dssp HHHHHHHHHHHTT------CCEEEECSSGGGCG---GGHHHHHTTGGGHHHHTTTSSCCTTEE-EEEEESC-CSSCGGG-
T ss_pred HHHHHHHHHHHCC------CeeEEEecchhHHH---HHHHHHHHHHHHHHhhhcCCccCCCEE-EEEecCC-CCCCcch-
Confidence 4466788888863 2455543 777743 3555554 44433 44 854 4455433 2233222
Q ss_pred ccccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786 126 QHQTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI 171 (176)
Q Consensus 126 ~~~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI 171 (176)
.+..|+. +.++. |+.++.- .|+.|....++.|++ .++|++|
T Consensus 146 -~~~~d~~-~l~~iP~l~V~~P--sd~~e~~~~l~~a~~-~~~Pv~i 187 (342)
T 2bfd_B 146 -HSQSPEA-FFAHCPGIKVVIP--RSPFQAKGLLLSCIE-DKNPCIF 187 (342)
T ss_dssp -SSCCCHH-HHHTSTTCEEECC--SSHHHHHHHHHHHHH-SSSCEEE
T ss_pred -hhHhHHH-HHhcCCCcEEEee--CCHHHHHHHHHHHHh-cCCcEEE
Confidence 2223443 34555 8887755 489999999999985 4899887
No 68
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=93.22 E-value=0.2 Score=43.54 Aligned_cols=105 Identities=10% Similarity=0.071 Sum_probs=62.1
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
+.-+|.|.|.+... -..+++..|=|..+ ..-++..|...++|+|++.-+-....+. .. ......|...+++
T Consensus 60 Aa~~A~Gyar~tg~----p~v~~~TsGpG~~N---~~~~v~~A~~~~~Pll~itg~~~~~~~~-~~-~~~Q~~d~~~~~~ 130 (573)
T 2iht_A 60 AGVAADVLARITGR----PQACWATLGPGMTN---LSTGIATSVLDRSPVIALAAQSESHDIF-PN-DTHQCLDSVAIVA 130 (573)
T ss_dssp HHHHHHHHHHHHCS----CEEEEECTTHHHHH---HHHHHHHHHHHTCCEEEEEEESCGGGCC-TT-TSTTCCCHHHHHG
T ss_pred HHHHHHHHHHHHCC----CEEEEEccCchHHH---HHHHHHHHHhhCCCEEEEcccCcccccC-Cc-CccccCCHHHHHH
Confidence 34477788776531 12344444555554 4557889999999966665553332222 10 1111236778888
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEe
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQR 173 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~ 173 (176)
.+--...++. +++++.+.+++|++ ...||+.|++
T Consensus 131 ~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~i 168 (573)
T 2iht_A 131 PMSKYAVELQ--RPHEITDLVDSAVNAAMTEPVGPSFISL 168 (573)
T ss_dssp GGSSEEEECC--SGGGHHHHHHHHHHHHTBSSCCCEEEEE
T ss_pred hHhhEEEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 8876677774 66666555555553 2348999986
No 69
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=93.17 E-value=0.6 Score=37.65 Aligned_cols=98 Identities=12% Similarity=-0.004 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEE-ECCCccCCchHHHHHHH-hhh--------cCCCcEEEEEecCCCccccCcccc
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCL-VGDGESAEGSIWEALHF-ASY--------YKLDNLCVIFDINRLGQSEPTSLQ 126 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~-~GDG~~~~G~~~eal~~-a~~--------~~lp~liiV~~nn~~~~~~~~~~~ 126 (176)
..++.|.|+|++-. ++++.+ .++.. + ..++.+.. ++. .++|++++ .. .++........+
T Consensus 62 ~~v~~a~G~A~~G~------~p~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~-~~-~g~~~~~g~~hs 130 (324)
T 1umd_B 62 AIVGAALGMAAHGL------RPVAEIQFADYI-F--PGFDQLVSQVAKLRYRSGGQFTAPLVVR-MP-SGGGVRGGHHHS 130 (324)
T ss_dssp HHHHHHHHHHHHTC------EEEEECSSGGGC-G--GGHHHHHHTTTTHHHHTTTSSCCCCEEE-EE-ECSSSSCGGGSS
T ss_pred HHHHHHHHHHHCCC------EEEEEeccHhHH-H--HHHHHHHHHHHHHHhhcCCCCcCCEEEE-Ec-CCCCCCCCCccc
Confidence 34667888888632 455544 77765 3 35565643 343 68995544 44 344332222111
Q ss_pred cccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786 127 HQTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI 171 (176)
Q Consensus 127 ~~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI 171 (176)
..+. .+++.. |+.++.- .|+.|....++.|++ .++|++|
T Consensus 131 --~~~~-a~~~~iP~~~V~~P--~d~~e~~~~l~~a~~-~~~Pv~i 170 (324)
T 1umd_B 131 --QSPE-AHFVHTAGLKVVAV--STPYDAKGLLKAAIR-DEDPVVF 170 (324)
T ss_dssp --CCCH-HHHHTSTTCEEEEC--CSHHHHHHHHHHHHH-CSSCEEE
T ss_pred --hhHH-HHHhcCCCCEEEEe--CCHHHHHHHHHHHHh-cCCCEEE
Confidence 2233 455555 8887765 489999999999984 6799887
No 70
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=93.14 E-value=0.28 Score=43.77 Aligned_cols=105 Identities=13% Similarity=-0.028 Sum_probs=64.7
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
+.-+|.|.|.+... -..++|..|=|.++ ..-++..|..-++|+|++.-+-....+.. ..+...|...+++
T Consensus 132 Aa~aAdGyAr~tGk----pgvv~~TsGpG~~N---~~~gia~A~~d~vPllvItG~~~~~~~g~---~a~Q~~Dq~~i~~ 201 (677)
T 1t9b_A 132 AGHMAEGYARASGK----PGVVLVTSGPGATN---VVTPMADAFADGIPMVVFTGQVPTSAIGT---DAFQEADVVGISR 201 (677)
T ss_dssp HHHHHHHHHHHHSS----CEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTTTS---CCTTCCCHHHHTG
T ss_pred HHHHHHHHHHHHCC----CEEEEECCChHHHH---HHHHHHHHHHcCCCEEEEeCCCChhhcCC---CCccccCHHHHhh
Confidence 34467888876531 23455555666665 34578899999999666655533322221 1111235667888
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG 174 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~ 174 (176)
.+--..+++. +++++.+.+++|+.. ..||++|++-
T Consensus 202 ~~tk~~~~v~--~~~~i~~~i~~A~~~A~~grpGPV~l~lP 240 (677)
T 1t9b_A 202 SCTKWNVMVK--SVEELPLRINEAFEIATSGRPGPVLVDLP 240 (677)
T ss_dssp GGSSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred hheeEEEEcC--CHHHHHHHHHHHHHHHhhCCCceEEEEcC
Confidence 8866666774 677777777777642 3589999863
No 71
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=93.09 E-value=0.25 Score=42.73 Aligned_cols=102 Identities=12% Similarity=-0.027 Sum_probs=60.4
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA 138 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a 138 (176)
.-+|.|.|.+... -..+++..|=|.++ ..-++..|..-++|+|++.-+-....+ +. ......|..++++.
T Consensus 54 a~~A~GyAr~tg~----~~v~~~TsGpG~~N---~~~gi~~A~~~~vPvl~itg~~~~~~~-~~--~~~Q~~d~~~~~~~ 123 (549)
T 3eya_A 54 AFAAGAEAQLSGE----LAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAHIPSSEI-GS--GYFQETHPQELFRE 123 (549)
T ss_dssp HHHHHHHHHHHSS----CEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEESCGGGT-TS--CCTTCCCHHHHTST
T ss_pred HHHHHHHHHHhCC----CEEEEeCCCCcHhh---hHHHHHHHHhhCCCEEEEeCCCchhhc-CC--CCCCccCHHHHHhh
Confidence 3467787776531 23445555777776 345799999999996666544322111 11 11112356778888
Q ss_pred cCceEEEecCCCHHH----HHHHHHHHHhhCCCcEEEEe
Q psy786 139 FGFNAVVVDGHDVEH----LVKVSSFKLQKAIGCVWIQR 173 (176)
Q Consensus 139 ~G~~~~~vdG~d~~~----l~~al~~a~~~~~~P~lI~~ 173 (176)
+--...++. ++++ +.+|++.|.. .++|+.|++
T Consensus 124 ~tk~~~~v~--~~~~~~~~i~~A~~~A~~-~~GPV~l~i 159 (549)
T 3eya_A 124 CSHYCELVS--SPEQIPQVLAIAMRKAVL-NRGVSVVVL 159 (549)
T ss_dssp TCSEEEECC--SGGGHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred hhheEEEeC--CHHHHHHHHHHHHHHHhh-CCCCEEEEe
Confidence 766666774 5544 5555555543 579999986
No 72
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=93.03 E-value=0.43 Score=41.33 Aligned_cols=109 Identities=13% Similarity=-0.002 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc---c-c-ccccHH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT---S-L-QHQTEV 131 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~---~-~-~~~~~~ 131 (176)
.+.-+|.|.|.+.. -..+++..|=|..+ ..-++..|...++|+|++.-+-......... + . .....|
T Consensus 52 ~Aa~~A~Gyar~tg-----~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d 123 (566)
T 2vbi_A 52 NCGFSAEGYARSNG-----AAAAVVTFSVGAIS---AMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSY 123 (566)
T ss_dssp HHHHHHHHHHHHHS-----CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTH
T ss_pred HHHHHHHHHHhhcC-----CeEEEEeCCCCHHH---HHHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHH
Confidence 33446778776541 23444455777765 4557888999999966665553332221110 0 0 011236
Q ss_pred HHHHHhhcCceEEEec-CCC-HHHHHHHHHHHHhhCCCcEEEEee
Q psy786 132 YRKRLDAFGFNAVVVD-GHD-VEHLVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 132 ~~~~a~a~G~~~~~vd-G~d-~~~l~~al~~a~~~~~~P~lI~~~ 174 (176)
...+++.+--..+++. -.+ ++.+.+|++.|... ++|+.|++-
T Consensus 124 ~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~GPV~l~iP 167 (566)
T 2vbi_A 124 QLEMARQVTCAAESITDAHSAPAKIDHVIRTALRE-RKPAYLDIA 167 (566)
T ss_dssp HHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHHHH-TCCEEEEEE
T ss_pred HHHHHhhhEeEEEEeCCHHHHHHHHHHHHHHHHhC-CCCEEEEec
Confidence 7888888866666774 222 34566677666543 599999863
No 73
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=92.88 E-value=0.26 Score=42.85 Aligned_cols=108 Identities=11% Similarity=-0.072 Sum_probs=60.3
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc--cccccH-HHHHH
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS--LQHQTE-VYRKR 135 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~--~~~~~~-~~~~~ 135 (176)
.-+|.|.|.+... -..+++..|=|..+ ..-++..|...++|+|++.-+-....+..... .+.... +...+
T Consensus 72 a~~A~GyAr~tgk----p~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~ 144 (565)
T 2nxw_A 72 GFAADAAARYSST----LGVAAVTYGAGAFN---MVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQV 144 (565)
T ss_dssp HHHHHHHHHHHTS----CEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHH
T ss_pred HHHHHHHHHHhCC----CeEEEECCCCCHHH---HHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHH
Confidence 3467788776531 12344444666665 34578899999999766665533322211100 000112 36678
Q ss_pred HhhcCceEEEec-CCC-HHHHHHHHHHHHhhCCCcEEEEee
Q psy786 136 LDAFGFNAVVVD-GHD-VEHLVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 136 a~a~G~~~~~vd-G~d-~~~l~~al~~a~~~~~~P~lI~~~ 174 (176)
++.+--..+++. -.+ ++.+.+|++.|... ++|+.|++-
T Consensus 145 ~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP 184 (565)
T 2nxw_A 145 FKEITVAQARLDDPAKAPAEIARVLGAARAQ-SRPVYLEIP 184 (565)
T ss_dssp HTTSCSCEEECCCTTTHHHHHHHHHHHHHHH-TCCEEEEEE
T ss_pred HHhhheEEEEeCCHHHHHHHHHHHHHHHHhC-CCCEEEECC
Confidence 888866666664 122 34566666666543 699999863
No 74
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=92.88 E-value=0.37 Score=42.03 Aligned_cols=103 Identities=10% Similarity=0.090 Sum_probs=61.0
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA 138 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a 138 (176)
.-+|.|.|.+... -..+++..|=|..+ ..-++..|..-++|+|++.-+-....+......+ ..|... ++.
T Consensus 56 a~~A~GyAr~tg~----p~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q--~~d~~~-~~~ 125 (589)
T 2pgn_A 56 AWMVNGYNYVKDR----SAAVGAWHCVGNLL---LHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQ--QVPWQS-FTP 125 (589)
T ss_dssp HHHHHHHHHHHTS----CCEEEEEEGGGGGG---CHHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSS--CCCGGG-GTT
T ss_pred HHHHHHHHHHHCC----CEEEEEecCchHHH---HHHHHHHHHhcCCCEEEEecCCcccccCCCCccc--ccChhh-ccc
Confidence 3467788776531 24677788888887 3457999999999966665554332222110111 123334 555
Q ss_pred cCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEe
Q psy786 139 FGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQR 173 (176)
Q Consensus 139 ~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~ 173 (176)
+--..+++. +++++.+.+++|+. ...||+.|++
T Consensus 126 ~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~i 162 (589)
T 2pgn_A 126 IARSTQRVE--RLDKVGEAIHEAFRVAEGHPAGPAYVDI 162 (589)
T ss_dssp TSSEEEECC--SGGGHHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred cEEEEeecC--CHHHHHHHHHHHHHHHhcCCCccEEEEe
Confidence 555556664 56555555555543 2348999986
No 75
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=92.86 E-value=0.65 Score=41.80 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=63.3
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCC--ccccCcccccccHHHHHHH
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRL--GQSEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~--~~~~~~~~~~~~~~~~~~a 136 (176)
++.|.|+|+... -++++.+.. .|.+ ...+.+..++..++|++ ++....+. +..+++. .+..+++-+.
T Consensus 461 v~~AaGlA~~~G-----~~Pv~~~f~--~F~~-~~~~~ir~~a~~~lpv~-~v~thdg~gvG~dG~TH--q~~ed~a~lr 529 (711)
T 3uk1_A 461 SAAINGLVLHGG-----YKPFGGTFL--TFSD-YSRNALRVAALMKVPSI-FVFTHDSIGLGEDGPTH--QSVEHVASLR 529 (711)
T ss_dssp HHHHHHHHHHSS-----CEEEEEEEG--GGHH-HHHHHHHHHHHHTCCCE-EEEECCSGGGCTTCTTT--CCSSHHHHHH
T ss_pred HHHHHHHHHcCC-----CEEEEEEhH--HHHH-HHHHHHHHhhhcCCCEE-EEEECCCcCcCCCCCcc--CChhHHHHHh
Confidence 567889887422 246666653 3432 34566777788999954 44544444 4444443 2334555433
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
.--|+.++.= .|+.|+..+++.|++ .++|++|-
T Consensus 530 ~iPnl~V~~P--ad~~E~~~~l~~Ai~-~~~Pv~ir 562 (711)
T 3uk1_A 530 LIPNLDVWRP--ADTVETAVAWTYAVA-HQHPSCLI 562 (711)
T ss_dssp TSTTCEEECC--SSHHHHHHHHHHHHH-SSSCEEEE
T ss_pred cCCCCEEEec--CCHHHHHHHHHHHHh-cCCCEEEE
Confidence 3348887754 389999999999985 78998874
No 76
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=92.78 E-value=0.9 Score=40.81 Aligned_cols=101 Identities=14% Similarity=0.138 Sum_probs=61.7
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCC--ccccCcccccccHHHHHHH
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRL--GQSEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~--~~~~~~~~~~~~~~~~~~a 136 (176)
++.|.|+|+.-. -++++..+.. |.. ....++..++..++|++ ++....++ +..+++. ++..+++-+.
T Consensus 445 v~~A~GlA~~gG-----~~Pv~~tF~~--F~d-~~~~~ir~~al~~lpvv-~v~thdg~gvG~dG~TH--q~ied~a~lr 513 (700)
T 3rim_A 445 GAILSGIVLHGP-----TRAYGGTFLQ--FSD-YMRPAVRLAALMDIDTI-YVWTHDSIGLGEDGPTH--QPIEHLSALR 513 (700)
T ss_dssp HHHHHHHHHHSS-----CEEEEEEEGG--GGG-GGHHHHHHHHHHTCCCE-EEEECCSGGGCTTCTTT--SCSSHHHHHH
T ss_pred HHHHHHHHHcCC-----CEEEEEecHH--HHH-HHHHHHHHhcCCCCCEE-EEEeCCCcccCCCCCcc--CChhHHHHHh
Confidence 567788888621 2456553322 211 23345777888999954 55543444 4444443 3345665444
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHhhCC--CcEEEE
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQKAI--GCVWIQ 172 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~~~--~P~lI~ 172 (176)
.--|+.++.= .|+.|+..+++.|++..+ +|++|-
T Consensus 514 ~iPnl~V~~P--ad~~e~~~~l~~Ai~~~~~~~Pv~ir 549 (700)
T 3rim_A 514 AIPRLSVVRP--ADANETAYAWRTILARRNGSGPVGLI 549 (700)
T ss_dssp TSTTCEEECC--SSHHHHHHHHHHHHTTTTCSSCEEEE
T ss_pred cCCCCEEEeC--CCHHHHHHHHHHHHHccCCCCCEEEE
Confidence 4448887743 389999999999986555 798874
No 77
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=92.52 E-value=0.35 Score=42.43 Aligned_cols=105 Identities=16% Similarity=0.056 Sum_probs=64.1
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~ 137 (176)
+.-+|.|.|.+.. +.-..+++..|=|..+ ..-++..|..-+.|+|++.-+.....+. . ......|..++++
T Consensus 77 Aa~~A~GyAr~tg---g~~~v~~~TsGpG~~N---~~~~l~~A~~~~vPlvvItg~~p~~~~~-~--~~~Q~~d~~~~~~ 147 (616)
T 2pan_A 77 ASHMAEGYTRATA---GNIGVCLGTSGPAGTD---MITALYSASADSIPILCITGQAPRARLH-K--EDFQAVDIEAIAK 147 (616)
T ss_dssp HHHHHHHHHHHST---TCCEEEEECSTHHHHT---SHHHHHHHHHTTCCEEEEEEECCGGGTT-T--TCTTCCCHHHHHG
T ss_pred HHHHHHHHHHhcC---CCceEEEeCCCchHHH---HHHHHHHHHhcCCCEEEEecCCcccccC-c--ccccccCHHHHHH
Confidence 3446788887751 0112344555666665 3457889999999976666554332221 1 1111245678888
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR 173 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~ 173 (176)
.+--..+++. +++++...+++|+.. .+||+.|++
T Consensus 148 ~~tk~~~~v~--~~~~i~~~l~~A~~~A~~~r~GPV~l~i 185 (616)
T 2pan_A 148 PVSKMAVTVR--EAALVPRVLQQAFHLMRSGRPGPVLVDL 185 (616)
T ss_dssp GGSSEEEECC--SGGGHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred HHHHhhcccC--CHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 8876667774 666777777766642 258999986
No 78
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=92.32 E-value=0.18 Score=43.70 Aligned_cols=105 Identities=11% Similarity=0.000 Sum_probs=59.5
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA 138 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a 138 (176)
.-+|.|.|.+... -..+++..|=|..+ ..-++..|...++|+|++.-+-.. ...+.....+...|...+++.
T Consensus 58 a~~A~Gyar~tg~----pgv~~~TsGpG~~N---~~~gi~~A~~~~vPll~itg~~~~-~~~~~~~~~~Q~~dq~~~~~~ 129 (564)
T 2q28_A 58 GYAAAASGFLTQK----PGICLTVSAPGFLN---GLTALANATVNGFPMIMISGSSDR-AIVDLQQGDYEELDQMNAAKP 129 (564)
T ss_dssp HHHHHHHHHHHSS----CEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCH-HHHHTTSCCTTCCCHHHHHGG
T ss_pred HHHHHHHHHHhCC----CEEEEEccCchHHH---HHHHHHHHHhcCCCEEEEeCCCCc-cccCCCCCccccccHHHHHHH
Confidence 3467787776531 12444445666555 455788899999996666554322 211100011112356678888
Q ss_pred cCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEe
Q psy786 139 FGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQR 173 (176)
Q Consensus 139 ~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~ 173 (176)
+--..+++. +++++.+.+++|+. ..+||+.|++
T Consensus 130 ~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~i 166 (564)
T 2q28_A 130 YAKAAFRVN--QPQDLGIALARAIRVSVSGRPGGVYLDL 166 (564)
T ss_dssp GSSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred hhheeeecC--CHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 876677774 55555444444443 2468999986
No 79
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=91.72 E-value=0.2 Score=43.54 Aligned_cols=105 Identities=8% Similarity=-0.066 Sum_probs=59.4
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA 138 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a 138 (176)
.-+|.|.|.+... -..+++..|=|..+ ..-++..|..-++|+|++.-+-.. ...+.........|...+++.
T Consensus 60 a~~A~GyAr~tg~----pgv~~~TsGpG~~N---~~~~i~~A~~~~vPll~itg~~~~-~~~~~~~~~~Q~~dq~~~~~~ 131 (568)
T 2c31_A 60 GYAASIAGYIEGK----PGVCLTVSAPGFLN---GVTSLAHATTNCFPMILLSGSSER-EIVDLQQGDYEEMDQMNVARP 131 (568)
T ss_dssp HHHHHHHHHHHSS----CEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCH-HHHHTTCCCTTCCCHHHHSGG
T ss_pred HHHHHHHHHHhCC----CEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEccCCCc-cccCCCCCcccccCHHHHHHh
Confidence 3467787776431 12444445556555 455788999999996666555322 211100011112356677888
Q ss_pred cCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEe
Q psy786 139 FGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQR 173 (176)
Q Consensus 139 ~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~ 173 (176)
+--..+++. +++++...+++|+. ..+||+.|++
T Consensus 132 ~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~i 168 (568)
T 2c31_A 132 HCKASFRIN--SIKDIPIGIARAVRTAVSGRPGGVYVDL 168 (568)
T ss_dssp GSSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred hhheeeecC--CHHHHHHHHHHHHHHhcCCCCceEEEeC
Confidence 766666774 55555555555443 2468999986
No 80
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=91.71 E-value=0.19 Score=44.00 Aligned_cols=104 Identities=13% Similarity=-0.020 Sum_probs=60.3
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA 138 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a 138 (176)
.-+|.|.|.+... -..+++..|=|.++ ..-++..|...++|+|++.-+-....+... .....|...+++.
T Consensus 63 a~aA~GyAr~tg~----~gv~~~TsGpG~~N---~~~gia~A~~~~vPvl~itG~~~~~~~~~~---~~Q~~d~~~~~~~ 132 (603)
T 4feg_A 63 AMAAAADAKLTGK----IGVCFGSAGPGGTH---LMNGLYDAREDHVPVLALIGQFGTTGMNMD---TFQEMNENPIYAD 132 (603)
T ss_dssp HHHHHHHHHHHSS----CEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEECCTTTTTSC---CTTCCCCGGGGTT
T ss_pred HHHHHHHHHHhCC----ceEEEecCCchHHH---HHHHHHHHHHcCCCEEEEecCCcccccCCC---ccccccHHHHhhh
Confidence 3467787776531 13444555777776 345799999999997666655333222111 1111234556777
Q ss_pred cCceEEEec-CCC-HHHHHHHHHHHHhhCCCcEEEEe
Q psy786 139 FGFNAVVVD-GHD-VEHLVKVSSFKLQKAIGCVWIQR 173 (176)
Q Consensus 139 ~G~~~~~vd-G~d-~~~l~~al~~a~~~~~~P~lI~~ 173 (176)
+--...++. -.+ ++.+.+|++.|.. .+||+.|++
T Consensus 133 ~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~i 168 (603)
T 4feg_A 133 VADYNVTAVNAATLPHVIDEAIRRAYA-HQGVAVVQI 168 (603)
T ss_dssp TCSEEEECCCSTTHHHHHHHHHHHHHH-HTSEEEEEE
T ss_pred hceEEEEcCCHHHHHHHHHHHHHHHhc-CCCCEEEEe
Confidence 765566663 222 3456666666654 479999986
No 81
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=91.28 E-value=0.38 Score=42.08 Aligned_cols=106 Identities=12% Similarity=0.043 Sum_probs=59.0
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA 138 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a 138 (176)
.-+|.|.|.+... -..+++..|=|..+ ..-++..|..-++|+|++.-+-....+... . ....|...+++.
T Consensus 82 a~aA~GyAr~tgk----pgv~~~TsGpG~~N---~~~gia~A~~~~vPlv~ItG~~~~~~~g~~-~--~Q~~d~~~~~~~ 151 (604)
T 2x7j_A 82 GFFALGLAKAKQR----PVLLICTSGTAAAN---FYPAVVEAHYSRVPIIVLTADRPHELREVG-A--PQAINQHFLFGN 151 (604)
T ss_dssp HHHHHHHHHHHTS----CEEEEECSSHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGSSSC-C--TTCCCCTTTTGG
T ss_pred HHHHHHHHHhhCC----CEEEEECChhHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhCCC-C--CCcCcHHHHhhh
Confidence 3467788776531 23445555777666 345788999999996666555332212111 0 111234456666
Q ss_pred cCceEEEec-CCC--------HHHHHHHHHHHHhhCCCcEEEEee
Q psy786 139 FGFNAVVVD-GHD--------VEHLVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 139 ~G~~~~~vd-G~d--------~~~l~~al~~a~~~~~~P~lI~~~ 174 (176)
+--..+++. -.+ ++.+.+|++.|....+||+.|++-
T Consensus 152 ~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 196 (604)
T 2x7j_A 152 FVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVP 196 (604)
T ss_dssp GSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred heeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcc
Confidence 654556663 223 335566666554324689999863
No 82
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=90.34 E-value=2.1 Score=39.39 Aligned_cols=106 Identities=8% Similarity=0.055 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCch--HHHHHHHhhh--c--CCCcEEEEEecCCCccccCcccccccH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGS--IWEALHFASY--Y--KLDNLCVIFDINRLGQSEPTSLQHQTE 130 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~--~~eal~~a~~--~--~lp~liiV~~nn~~~~~~~~~~~~~~~ 130 (176)
..++.|.|+|+..+ ..+++.-+==|.|..+. .+.-+...++ | ++| +++++...+.+ .+++.......
T Consensus 595 ~~vG~a~G~A~~G~-----~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~~k~~~~~~-vvi~~p~G~~G-~Gp~Hs~~~~E 667 (868)
T 2yic_A 595 AAVGFEYGYSVGNP-----DAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSD-VVLLLPHGHEG-QGPDHTSGRIE 667 (868)
T ss_dssp HHHHHHHHHHHHCT-----TSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCC-CEEEEECCCSS-SCTTSSCCCHH
T ss_pred HHHHHHHHHHccCC-----CCceEEEEehHHHHhhHHHHHHHHHHHHHHHhCCCCC-EEEEecCCCCC-CChhhcCCcHH
Confidence 34677889988765 33455555556665543 1232433332 2 788 55556644433 33332222245
Q ss_pred HHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh-CCCcEEE
Q psy786 131 VYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK-AIGCVWI 171 (176)
Q Consensus 131 ~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~-~~~P~lI 171 (176)
+|..+..--|+.++.- .|+.+....|++++.. .++|++|
T Consensus 668 ~~l~l~~~pnm~V~~P--s~p~~~~~lLr~a~~~~~~~Pvii 707 (868)
T 2yic_A 668 RFLQLWAEGSMTIAMP--STPANYFHLLRRHGKDGIQRPLIV 707 (868)
T ss_dssp HHHHHCCTTSCEEECC--CSHHHHHHHHHHHHHSSCCCCEEE
T ss_pred HHHhcCCCCCCEEEEe--CCHHHHHHHHHHHHhcCCCCcEEE
Confidence 5655555558887755 4999999999998754 3599876
No 83
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=90.25 E-value=0.55 Score=41.01 Aligned_cols=105 Identities=16% Similarity=-0.014 Sum_probs=60.4
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~ 135 (176)
..+.-+|.|.|.+... -..+++..|=|..+ ..-++..|...++|+|++.-+.....+... . ....|...+
T Consensus 53 ~~Aa~~A~GyAr~tgk----~~v~~~tsGpG~~N---~~~gl~~A~~~~vPll~Itg~~p~~~~g~~-~--~Q~~d~~~~ 122 (590)
T 1v5e_A 53 EVGAMAAVMQSKFGGN----LGVTVGSGGPGASH---LINGLYDAAMDNIPVVAILGSRPQRELNMD-A--FQELNQNPM 122 (590)
T ss_dssp HHHHHHHHHHHHTTCC----CCEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTTT-C--TTCCCCHHH
T ss_pred HHHHHHHHHHHHHHCC----CEEEEeCcChHHHH---HHHHHHHHHhcCCCEEEEcCCCCcccCCCC-c--ccccCHHHH
Confidence 3445577888876531 22444445666665 345688889999996666555433222111 1 111345677
Q ss_pred HhhcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEe
Q psy786 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQR 173 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~ 173 (176)
++.+--..+.+. +++++.+.+++|++ ...+|+.| +
T Consensus 123 ~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l-i 161 (590)
T 1v5e_A 123 YDHIAVYNRRVA--YAEQLPKLVDEAARMAIAKRGVAVLE-V 161 (590)
T ss_dssp HHTTCSEEEECC--SGGGHHHHHHHHHHHHHHTTSEEEEE-E
T ss_pred HHhhccEEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEE-E
Confidence 777765566774 66555555555543 23489988 5
No 84
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=89.85 E-value=0.58 Score=40.72 Aligned_cols=105 Identities=13% Similarity=0.062 Sum_probs=58.6
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA 138 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a 138 (176)
.-+|.|.|.+... -..+++..|=|.++ ..-++..|..-++|+|++.-+-.. ...+. ..+...|...+++.
T Consensus 62 a~aAdGyAr~tG~----pgv~~~TsGpG~~N---~~~gia~A~~d~vPll~itG~~p~-~~~g~--~~~Qe~d~~~~~~~ 131 (578)
T 3lq1_A 62 GFFALGLAKASKR----PVVLLCTSGTAAAN---YFPAVAEANLSQIPLIVLTADRPH-ELRNV--GAPQAMDQLHLYGS 131 (578)
T ss_dssp HHHHHHHHHHHCC----CEEEEECSSHHHHT---THHHHHHHHHTTCCEEEEEEECCG-GGTTS--SCTTCCCCTTTTGG
T ss_pred HHHHHHHHHhhCC----CEEEEECCchhhhh---hhHHHHHHHhcCCCeEEEeCCCCH-HhhcC--CCCCCcCHhhHHhh
Confidence 3367788876531 23455555777776 345799999999996666544222 11111 01111244456666
Q ss_pred cCceEEEec-CCCHH--------HHHHHHHHHHhhCCCcEEEEe
Q psy786 139 FGFNAVVVD-GHDVE--------HLVKVSSFKLQKAIGCVWIQR 173 (176)
Q Consensus 139 ~G~~~~~vd-G~d~~--------~l~~al~~a~~~~~~P~lI~~ 173 (176)
+--..+++. ..+.. .+.+|++.|....+||+.|++
T Consensus 132 ~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~i 175 (578)
T 3lq1_A 132 HVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNF 175 (578)
T ss_dssp GSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred heeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEEC
Confidence 644455663 33422 355666655433469999986
No 85
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=88.90 E-value=1.9 Score=37.25 Aligned_cols=107 Identities=11% Similarity=0.015 Sum_probs=62.9
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccC--cc--c-ccccHHHH
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEP--TS--L-QHQTEVYR 133 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~--~~--~-~~~~~~~~ 133 (176)
.-+|.|.|.+.. -..+++..|=|.++ ..-++..|...++|+|++.-+-........ .. . .....+..
T Consensus 55 a~~A~Gyar~tg-----~~v~~~TsGpG~~N---~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~~~ 126 (563)
T 2vk8_A 55 AYAADGYARIKG-----MSCIITTFGVGELS---ALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFH 126 (563)
T ss_dssp HHHHHHHHHHHS-----CEEEEEETTHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSSHHH
T ss_pred HHHHHHHHHhhC-----CcEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchHHHH
Confidence 446778777642 23455555777765 445788899999996666555322111000 00 0 00112567
Q ss_pred HHHhhcCceEEEec-CCC-HHHHHHHHHHHHhhCCCcEEEEee
Q psy786 134 KRLDAFGFNAVVVD-GHD-VEHLVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 134 ~~a~a~G~~~~~vd-G~d-~~~l~~al~~a~~~~~~P~lI~~~ 174 (176)
++++.+--...++. -.+ ++.+.+|++.|... ++|+.|++-
T Consensus 127 ~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP 168 (563)
T 2vk8_A 127 RMSANISETTAMITDIATAPAEIDRCIRTTYVT-QRPVYLGLP 168 (563)
T ss_dssp HHHHTTCSEEEECCCTTTHHHHHHHHHHHHHHH-TSCEEEEEE
T ss_pred HHhhhhEEEEEEeCCHHHHHHHHHHHHHHHHhC-CCCEEEEec
Confidence 78888876667774 122 45677777777643 599999863
No 86
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=88.77 E-value=2.7 Score=39.00 Aligned_cols=106 Identities=10% Similarity=0.072 Sum_probs=58.2
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEE-EECCCccCCc--hHHHHHHHhh--h--cCCCcEEEEEecCCCccccCcccccc
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYC-LVGDGESAEG--SIWEALHFAS--Y--YKLDNLCVIFDINRLGQSEPTSLQHQ 128 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~-~~GDG~~~~G--~~~eal~~a~--~--~~lp~liiV~~nn~~~~~~~~~~~~~ 128 (176)
...++.|.|+|++-+. ..+++. ..| .|..+ ..++-+...+ . +++| +++++.. +|.-.++......
T Consensus 662 ~~~vg~a~G~A~~G~~----~lpv~e~qf~--dF~~~AQra~DQii~~~~ak~~~~~~-vv~~l~~-G~~g~G~~Hss~~ 733 (933)
T 2jgd_A 662 EAVLAFEYGYATAEPR----TLTIWEAQFG--DFANGAQVVIDQFISSGEQKWGRMCG-LVMLLPH-GYEGQGPEHSSAR 733 (933)
T ss_dssp HHHHHHHHHHHHHCTT----SEEEEEC-CG--GGGGGGHHHHHHTTTTHHHHHCCCCC-CEEEEEC-CCSSSCTTSSCCC
T ss_pred HHHHHHHHHHHhcCCC----CCCEEEEEEh--hhhcccHHHHHHHHHHHHHHHccCCC-EEEEEeC-CCCCCCcccccch
Confidence 3456778888887541 113443 454 44433 2333343333 3 3788 5555654 4433333322222
Q ss_pred cHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh-CCCcEEE
Q psy786 129 TEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK-AIGCVWI 171 (176)
Q Consensus 129 ~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~-~~~P~lI 171 (176)
..+|..+..--|+.++.- .|+.+....+++++.+ .++|++|
T Consensus 734 ~E~~l~~~~~pnm~V~~P--st~~e~~~lLr~a~~~~~~~Pvii 775 (933)
T 2jgd_A 734 LERYLQLCAEQNMQVCVP--STPAQVYHMLRRQALRGMRRPLVV 775 (933)
T ss_dssp HHHHHHTCCTTCCEEECC--CSHHHHHHHHHHHHHSSCCCCEEE
T ss_pred HHHHHHHhCCCCeEEEec--CCHHHHHHHHHHHHHhcCCCcEEE
Confidence 344443333347776654 4999999999998534 4799887
No 87
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=88.76 E-value=1.5 Score=37.65 Aligned_cols=107 Identities=10% Similarity=0.014 Sum_probs=64.0
Q ss_pred hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc--c---cccccHHH
Q psy786 58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT--S---LQHQTEVY 132 (176)
Q Consensus 58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~--~---~~~~~~~~ 132 (176)
+.-+|.|.|.+.. + ..+++..|=|.++ ..-++..|...++|+|++.-+.......... . ......+.
T Consensus 55 A~~~A~Gyar~tg----~-~v~~~tsGpG~~N---~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q~~ 126 (552)
T 1ovm_A 55 ASYAADGYARCKG----F-AALLTTFGVGELS---AMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHF 126 (552)
T ss_dssp HHHHHHHHHHHHS----C-EEEEEETTHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHH
T ss_pred HHHHHHHHHHhhC----C-cEEEEccCCcHHH---HHHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHHHH
Confidence 3446788887642 2 3555666777655 3457889999999976666553321111100 0 00011246
Q ss_pred HHHHhhcCceEEEecCCC-HHHHHHHHHHHHhhCCCcEEEEe
Q psy786 133 RKRLDAFGFNAVVVDGHD-VEHLVKVSSFKLQKAIGCVWIQR 173 (176)
Q Consensus 133 ~~~a~a~G~~~~~vdG~d-~~~l~~al~~a~~~~~~P~lI~~ 173 (176)
.++++.+--..+++...+ ++.+.+|++.|... ++|+.|++
T Consensus 127 ~~~~~~~tk~~~~v~~~~~~~~i~~A~~~a~~~-~GPV~l~i 167 (552)
T 1ovm_A 127 YHMSEPITVAQAVLTEQNACYEIDRVLTTMLRE-RRPGYLML 167 (552)
T ss_dssp HHHTGGGCSEEEECCTTTHHHHHHHHHHHHHHH-TCCEEEEE
T ss_pred HHHHHhheeEEEEEccccHHHHHHHHHHHHHhC-CCCEEEEe
Confidence 778888877777774222 56677777777643 59999986
No 88
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=88.57 E-value=0.38 Score=41.68 Aligned_cols=105 Identities=16% Similarity=0.059 Sum_probs=61.8
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA 138 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a 138 (176)
.-+|.|.|.+... -..+++..|=|.++ ..-++..|..-+.|+|++.-+-....+... . +...|...+++.
T Consensus 59 a~~AdGyAr~tG~----pgv~~~TsGpG~~N---~~~gia~A~~d~vPll~itG~~~~~~~g~~-~--~Q~~d~~~~~~~ 128 (556)
T 3hww_A 59 GHLALGLAKVSKQ----PVAVIVTSGTAVAN---LYPALIEAGLTGEKLILLTADRPPELIDCG-A--NQAIRQPGMFAS 128 (556)
T ss_dssp HHHHHHHHHHHCS----CEEEEECSSHHHHT---THHHHHHHHHHCCCEEEEEEECCGGGSSSS-C--TTCCCCTTTTTT
T ss_pred HHHHHHHHHhhCC----CEEEEECCCcHHHh---hhHHHHHHHHhCCCeEEEeCCCCHHHhccC-C--CccccHHHHHhh
Confidence 3367777776531 23455556777776 345799999999996666554332222111 1 111244556666
Q ss_pred cCceEEEec-CC---CHHHHHHHHHHHHhh-CCCcEEEEe
Q psy786 139 FGFNAVVVD-GH---DVEHLVKVSSFKLQK-AIGCVWIQR 173 (176)
Q Consensus 139 ~G~~~~~vd-G~---d~~~l~~al~~a~~~-~~~P~lI~~ 173 (176)
+--..+.+. .. ..+++.+++++|+.. .+||+.|++
T Consensus 129 ~tk~~~~v~~~~~~~~~~~i~~~i~~A~~~~r~GPV~i~i 168 (556)
T 3hww_A 129 HPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINC 168 (556)
T ss_dssp CSSEEEECCCCCTTSCHHHHHHHHHHHHHSCCSSCEEEEE
T ss_pred heeEEEecCCCcccccHHHHHHHHHHHHhcCCCCCEEEeC
Confidence 654555663 11 135688999999843 358999986
No 89
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=88.41 E-value=3.3 Score=39.13 Aligned_cols=107 Identities=7% Similarity=0.020 Sum_probs=63.3
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCch--HHHHHHHhhh----cCCCcEEEEEecCCCccccCccccccc
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGS--IWEALHFASY----YKLDNLCVIFDINRLGQSEPTSLQHQT 129 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~--~~eal~~a~~----~~lp~liiV~~nn~~~~~~~~~~~~~~ 129 (176)
...++.|.|+|+..+ ..+++.-+==|.|..+. .++-+...++ .++| +++.+...+.+ .+++..+...
T Consensus 839 ~~~vg~a~G~A~~G~-----~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~~k~~~~~~-vv~~lp~G~~G-~G~~Hs~~~~ 911 (1113)
T 2xt6_A 839 FAAVGFEYGYSVGNP-----DAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSD-VVLLLPHGHEG-QGPDHTSGRI 911 (1113)
T ss_dssp HHHHHHHHHHHHHCT-----TSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCC-CEEEEECCCSS-SCTTSSCCCH
T ss_pred HHHHHHHHHHHhcCC-----CCceEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCC-EEEEeCCCCCC-CChhhhcccH
Confidence 345677889998765 33455555556665543 1222333332 2788 55556644433 3333323224
Q ss_pred HHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh-CCCcEEE
Q psy786 130 EVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK-AIGCVWI 171 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~-~~~P~lI 171 (176)
.+|..+..--|+.++.- .|+.+....|++++.. .++|++|
T Consensus 912 E~~l~l~~~pnm~V~~P--s~~~~~~~lLr~a~~~~~~~Pvii 952 (1113)
T 2xt6_A 912 ERFLQLWAEGSMTIAMP--STPANYFHLLRRHGKDGIQRPLIV 952 (1113)
T ss_dssp HHHHHHCCTTSCEEECC--SSHHHHHHHHHHHHHSSCCCCEEE
T ss_pred HHHHhcCCCCCcEEEec--CCHHHHHHHHHHHHhccCCCCEEE
Confidence 45555554458887755 4999999999998754 3589887
No 90
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=86.80 E-value=0.54 Score=40.30 Aligned_cols=108 Identities=10% Similarity=-0.059 Sum_probs=59.1
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~ 135 (176)
..+.-+|.|.|.+... -..+++..|=|..+ ..-++..|...++|+|++.-+-....+. ....+. ..|...+
T Consensus 48 ~~Aa~~A~Gyar~tg~----~~v~~~tsGpG~~N---~~~~l~~A~~~~~Pll~itg~~~~~~~~-~~~~q~-~~d~~~~ 118 (528)
T 1q6z_A 48 ACVVGIADGYAQASRK----PAFINLHSAAGTGN---AMGALSNAWNSHSPLIVTAGQQTRAMIG-VEALLT-NVDAANL 118 (528)
T ss_dssp HHHHHHHHHHHHHHTS----CEEEEEEHHHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHT-TTCTTC-CTTGGGS
T ss_pred HHHHHHHHHHHHHhCC----CEEEEEcCChHHHH---HHHHHHHHhhcCCCEEEEeCCCcccccC-CCcccc-cccHHHH
Confidence 3344578888877531 23344555777775 3457888999999966665543221111 100111 1244556
Q ss_pred HhhcCceEEEecCCCHHH----HHHHHHHHHhhCCCcEEEEee
Q psy786 136 LDAFGFNAVVVDGHDVEH----LVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 136 a~a~G~~~~~vdG~d~~~----l~~al~~a~~~~~~P~lI~~~ 174 (176)
++.+--...++. ++++ +.+|++.|....+||+.|++-
T Consensus 119 ~~~~~k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 159 (528)
T 1q6z_A 119 PRPLVKWSYEPA--SAAEVPHAMSRAIHMASMAPQGPVYLSVP 159 (528)
T ss_dssp STTSCSCEECCS--SGGGHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred HHHhhHhhhcCC--CHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 666644445553 4444 455555554334589999863
No 91
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=86.66 E-value=2.2 Score=36.92 Aligned_cols=109 Identities=16% Similarity=0.081 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccC----ccccc-ccHH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEP----TSLQH-QTEV 131 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~----~~~~~-~~~~ 131 (176)
.+.-+|.|.|.+.. -..+++..|=|.++ ..-++..|...++|+|++.-+......... +.... ...+
T Consensus 74 ~A~~~A~GyAr~tG-----~~v~~~tsGpG~~N---~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~ 145 (570)
T 2vbf_A 74 NASYMADGYARTKK-----AAAFLTTFGVGELS---AINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKH 145 (570)
T ss_dssp HHHHHHHHHHHHHS-----CEEEEEETTHHHHH---HHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCH
T ss_pred HHHHHHHHHHHHhC-----CeEEEEcCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHH
Confidence 34456778776531 22445555666554 445788899999997666655333221110 00000 1224
Q ss_pred HHHHHhhcCceEEEecCCC-HHHHHHHHHHHHhhCCCcEEEEee
Q psy786 132 YRKRLDAFGFNAVVVDGHD-VEHLVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 132 ~~~~a~a~G~~~~~vdG~d-~~~l~~al~~a~~~~~~P~lI~~~ 174 (176)
...+++.+--..+++.-.+ ++.+.+|++.|.. .++|+.|++-
T Consensus 146 ~~~~~~~~tk~~~~v~~~~~~~~l~~A~~~A~~-~~GPV~l~iP 188 (570)
T 2vbf_A 146 FMKMHEPVTAARTLLTAENATYEIDRVLSQLLK-ERKPVYINLP 188 (570)
T ss_dssp HHHHTGGGCSEEEECCTTTHHHHHHHHHHHHHH-HCCCEEEEEE
T ss_pred HHHHhhhhEEEEEEECcccHHHHHHHHHHHHhh-CCCCEEEEcc
Confidence 5678888876667774222 3556777777764 3599999863
No 92
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=82.94 E-value=12 Score=27.36 Aligned_cols=92 Identities=16% Similarity=0.093 Sum_probs=51.1
Q ss_pred chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCC-----------CccccCcc
Q psy786 56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINR-----------LGQSEPTS 124 (176)
Q Consensus 56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~-----------~~~~~~~~ 124 (176)
|..+..|+-.|+..-......+++|.++.||.-..+...+.+..+...++++.+|-+-+.. |.-.....
T Consensus 91 ~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~ 170 (218)
T 3ibs_A 91 GTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGN 170 (218)
T ss_dssp SCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSC
T ss_pred CCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeEcCCCC
Confidence 3444445544443211011245799999999988765566677777777774444443211 11000000
Q ss_pred c---ccccHHHHHHHhhcCceEEEec
Q psy786 125 L---QHQTEVYRKRLDAFGFNAVVVD 147 (176)
Q Consensus 125 ~---~~~~~~~~~~a~a~G~~~~~vd 147 (176)
. ......+.++|+.-|..++.++
T Consensus 171 ~~~~~~~~~~L~~iA~~~gG~~~~~~ 196 (218)
T 3ibs_A 171 VIVTRLNEGMCQEIAKDGKGIYVRVD 196 (218)
T ss_dssp BCEECCCHHHHHHHHHHTEEEEEEEC
T ss_pred EeEecCCHHHHHHHHHhcCCEEEECC
Confidence 0 1223457889999999999885
No 93
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=80.68 E-value=5.4 Score=38.08 Aligned_cols=99 Identities=9% Similarity=-0.082 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCc--cccCcccccccHHHHH
Q psy786 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLG--QSEPTSLQHQTEVYRK 134 (176)
Q Consensus 57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~--~~~~~~~~~~~~~~~~ 134 (176)
.++++++|++++= .++++.+--.++. ...|.|..++-..+|+|+++.+..+-+ ++... ...|+.
T Consensus 65 aA~~aaiGAa~aG-------aR~~t~Ts~~Gl~--lm~e~l~~~ag~~~P~Vi~va~R~g~~~glsi~~----~hsd~~- 130 (1231)
T 2c42_A 65 GAAGAVHGALAAG-------ALTTTFTASQGLL--LMIPNMYKISGELLPGVFHVTARAIAAHALSIFG----DHQDIY- 130 (1231)
T ss_dssp HHHHHHHHHHHTT-------CCEEEEECHHHHH--HHHHHHHHHHHTTCCCEEEEEECCCCSSSBCCSC----CSHHHH-
T ss_pred HHHHHHHHHHHcC-------ChHhhhccHHHHH--HHHHHHHHHhCCCCCEEEEECCCCccCCCCcCCC----chhhHH-
Confidence 3467788888863 3566665444554 345777655556899777777654321 11111 112332
Q ss_pred HHhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEE
Q psy786 135 RLDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWI 171 (176)
Q Consensus 135 ~a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI 171 (176)
.++..||..+.- .+++|...-...|+. +.+-|+++
T Consensus 131 ~ar~~G~~vl~p--ss~QEa~dl~~~Af~lAek~~~PVi~ 168 (1231)
T 2c42_A 131 AARQTGFAMLAS--SSVQEAHDMALVAHLAAIESNVPFMH 168 (1231)
T ss_dssp TTTTSSCEEEEC--CSHHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred HHhcCCcEEEEC--CCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 367778877755 488888877777743 34678775
No 94
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=75.46 E-value=8.8 Score=27.27 Aligned_cols=56 Identities=13% Similarity=0.215 Sum_probs=38.4
Q ss_pred EEEEEecCCCccccCcc----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh
Q psy786 108 LCVIFDINRLGQSEPTS----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 108 liiV~~nn~~~~~~~~~----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~ 163 (176)
+.+|+||..+.-..... .......+.+.++.+|+++...+--+.+++.+.+++.-+
T Consensus 18 ~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~ 77 (146)
T 2dko_A 18 LCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSK 77 (146)
T ss_dssp EEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHH
Confidence 67788888776432111 111234678889999999887655688999999988754
No 95
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=75.05 E-value=7.3 Score=30.61 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=38.9
Q ss_pred EEEEEecCCCcccc---CcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh
Q psy786 108 LCVIFDINRLGQSE---PTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 108 liiV~~nn~~~~~~---~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~ 163 (176)
+.+|++|..|.-.. ..........+.+.++.+|+++...+.-+.+++.+++++..+
T Consensus 34 ~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~ 92 (272)
T 1m72_A 34 MAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAE 92 (272)
T ss_dssp EEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHT
T ss_pred EEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHH
Confidence 67888888886321 111111234677888899999887755788999999998753
No 96
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=73.70 E-value=9.1 Score=27.86 Aligned_cols=57 Identities=7% Similarity=0.083 Sum_probs=39.1
Q ss_pred cEEEEEecCCCccccCc----ccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh
Q psy786 107 NLCVIFDINRLGQSEPT----SLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 107 ~liiV~~nn~~~~~~~~----~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~ 163 (176)
-+.+|+||..+.-.... ........+.+.++.+|+++...+--+.+++.+.+++..+
T Consensus 34 G~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 34 GLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp EEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHT
T ss_pred eEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHhhh
Confidence 47788888877543211 1111234678888999999886655688999999988753
No 97
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=72.86 E-value=8.8 Score=30.23 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=38.7
Q ss_pred EEEEEecCCCccccCcc----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHH
Q psy786 108 LCVIFDINRLGQSEPTS----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKL 162 (176)
Q Consensus 108 liiV~~nn~~~~~~~~~----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~ 162 (176)
+.+|+||..|....... .......+.+.++.+|+++...+--+.+++.++++++.
T Consensus 23 ~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~ 81 (278)
T 3od5_A 23 IALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVS 81 (278)
T ss_dssp EEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred EEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHH
Confidence 77888988886421111 11123467888899999988775568899999999874
No 98
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=72.64 E-value=12 Score=24.85 Aligned_cols=71 Identities=23% Similarity=0.318 Sum_probs=49.0
Q ss_pred ceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHH
Q psy786 77 YRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVK 156 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~ 156 (176)
..|++++-|-+-.+ .++.+....+..++++|++.. +....++..-.+--|+++.+|. .|+++.+
T Consensus 52 tivvvvvddkewae----kairfvkslgaqvliiiydqd----------qnrleefsrevrrrgfevrtvt--spddfkk 115 (134)
T 2l69_A 52 TIVVVVVDDKEWAE----KAIRFVKSLGAQVLIIIYDQD----------QNRLEEFSREVRRRGFEVRTVT--SPDDFKK 115 (134)
T ss_dssp EEEEEECSSHHHHH----HHHHHHHHHCCCCEEEEECSC----------HHHHHHHHHHHHHTTCCEEEES--SHHHHHH
T ss_pred eEEEEEEccHHHHH----HHHHHHHhcCCeEEEEEEeCc----------hhHHHHHHHHHHhcCceEEEec--ChHHHHH
Confidence 35666666655432 367777788888888888732 2223456666777899999985 8999999
Q ss_pred HHHHHHh
Q psy786 157 VSSFKLQ 163 (176)
Q Consensus 157 al~~a~~ 163 (176)
.+++-+.
T Consensus 116 slerlir 122 (134)
T 2l69_A 116 SLERLIR 122 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887663
No 99
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=72.27 E-value=9.6 Score=29.46 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=38.8
Q ss_pred EEEEEecCCCccccCc-cc---ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh
Q psy786 108 LCVIFDINRLGQSEPT-SL---QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 108 liiV~~nn~~~~~~~~-~~---~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~ 163 (176)
+.+|++|..|.-.... .. ......+.+.++.+|+++.....-+.+++.+++++..+
T Consensus 18 ~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~ 77 (250)
T 2j32_A 18 LCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSK 77 (250)
T ss_dssp EEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHT
T ss_pred EEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 6788888888643111 11 11234677888899999887654688999999998754
No 100
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=72.08 E-value=15 Score=28.71 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=39.3
Q ss_pred cEEEEEecCCCccccCc----ccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh
Q psy786 107 NLCVIFDINRLGQSEPT----SLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 107 ~liiV~~nn~~~~~~~~----~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~ 163 (176)
-+.+|+||..|...... ........+.+.++.+|+++...+--+.+++.+++++..+
T Consensus 22 g~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~ 82 (277)
T 1nw9_B 22 GHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAKKMVLALLELAR 82 (277)
T ss_dssp EEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHH
T ss_pred cEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHH
Confidence 47788888888643211 1111234677888899999887654688999999988754
No 101
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=71.06 E-value=10 Score=30.51 Aligned_cols=56 Identities=18% Similarity=0.286 Sum_probs=38.9
Q ss_pred cEEEEEecCCCcccc---CcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHH
Q psy786 107 NLCVIFDINRLGQSE---PTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKL 162 (176)
Q Consensus 107 ~liiV~~nn~~~~~~---~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~ 162 (176)
-+.+|++|..|.... ..........+.+.++.+|+++...+--+.+++.+++++..
T Consensus 61 g~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~ 119 (310)
T 2nn3_C 61 GMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTA 119 (310)
T ss_dssp CEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred CEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHH
Confidence 377888988886321 11111123467788899999988775578899999998875
No 102
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=71.02 E-value=11 Score=27.63 Aligned_cols=56 Identities=11% Similarity=0.064 Sum_probs=37.5
Q ss_pred cEEEEEecCCCccccC-cccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHH
Q psy786 107 NLCVIFDINRLGQSEP-TSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKL 162 (176)
Q Consensus 107 ~liiV~~nn~~~~~~~-~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~ 162 (176)
-+.+|++|..|.-... .........+.+.++.+|+++.....-+.+++.+++++..
T Consensus 44 g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~f~ 100 (178)
T 2h54_A 44 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAFA 100 (178)
T ss_dssp CEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred CEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHH
Confidence 3778888888842111 0111112467788889999988765468899999998864
No 103
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=70.17 E-value=13 Score=27.49 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=38.6
Q ss_pred EEEEEecCCCccccCcc----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHH
Q psy786 108 LCVIFDINRLGQSEPTS----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKL 162 (176)
Q Consensus 108 liiV~~nn~~~~~~~~~----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~ 162 (176)
+.+|+||..+....... .......+.+.++.+|+++...+--+.+++.+.++++.
T Consensus 46 ~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~~dlt~~em~~~l~~~~ 104 (179)
T 3p45_A 46 IALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVS 104 (179)
T ss_dssp EEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred EEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHh
Confidence 77888888775421111 11123467888999999988775578899999999874
No 104
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=70.13 E-value=12 Score=27.17 Aligned_cols=56 Identities=11% Similarity=0.261 Sum_probs=38.2
Q ss_pred cEEEEEecCCCcccc-----------CcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHH
Q psy786 107 NLCVIFDINRLGQSE-----------PTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKL 162 (176)
Q Consensus 107 ~liiV~~nn~~~~~~-----------~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~ 162 (176)
-+.+|+||..+.-.. ..........+.+.++.+|+++...+--+.+++.+.+++.-
T Consensus 24 G~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~ 90 (164)
T 1qtn_A 24 GYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQ 90 (164)
T ss_dssp CEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred eEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHH
Confidence 377888887775321 11111123467888999999988765568899999998874
No 105
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=69.05 E-value=12 Score=29.47 Aligned_cols=57 Identities=12% Similarity=0.209 Sum_probs=39.7
Q ss_pred cEEEEEecCCCccccCccc----ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh
Q psy786 107 NLCVIFDINRLGQSEPTSL----QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 107 ~liiV~~nn~~~~~~~~~~----~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~ 163 (176)
-+.+|+||..|........ ......+.+.++.+|+++...+--+.+++.+++++..+
T Consensus 45 g~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~ 105 (277)
T 4ehd_A 45 GLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSK 105 (277)
T ss_dssp EEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHT
T ss_pred CEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHh
Confidence 3778889888864321111 11234677888899999887755788999999998753
No 106
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=68.26 E-value=10 Score=29.47 Aligned_cols=55 Identities=11% Similarity=0.266 Sum_probs=36.5
Q ss_pred EEEEEecCCCccc---cCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHH
Q psy786 108 LCVIFDINRLGQS---EPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKL 162 (176)
Q Consensus 108 liiV~~nn~~~~~---~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~ 162 (176)
+.+|+||..|... ...........+.+.++.+|+++...+--+.+++.+++++..
T Consensus 22 ~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~ 79 (259)
T 3sir_A 22 MALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVYKDCRYKDILRTIEYSA 79 (259)
T ss_dssp EEEEEEECCC-----------CCHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHHHH
T ss_pred EEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 6788888888642 111111223567888999999988665468899999999875
No 107
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=67.88 E-value=13 Score=27.36 Aligned_cols=55 Identities=13% Similarity=0.280 Sum_probs=37.9
Q ss_pred EEEEEecCCCccccCc----ccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHH
Q psy786 108 LCVIFDINRLGQSEPT----SLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKL 162 (176)
Q Consensus 108 liiV~~nn~~~~~~~~----~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~ 162 (176)
+.+|+||..+.-.... ........+.+.++.+|+++...+--+.+++.+.++++-
T Consensus 46 ~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V~v~~dlt~~em~~~l~~~s 104 (173)
T 2ql9_A 46 KCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKAS 104 (173)
T ss_dssp EEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHH
T ss_pred EEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 6788888877543211 111123467788899999988765568899999999864
No 108
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=65.24 E-value=13 Score=29.82 Aligned_cols=56 Identities=13% Similarity=0.303 Sum_probs=38.9
Q ss_pred EEEEEecCCCccccCccc----ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh
Q psy786 108 LCVIFDINRLGQSEPTSL----QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 108 liiV~~nn~~~~~~~~~~----~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~ 163 (176)
+.+|++|..|.-...... ......+.+.++.+|+++.....-+.+++.+++++..+
T Consensus 71 ~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~ 130 (305)
T 1f1j_A 71 KCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASE 130 (305)
T ss_dssp EEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHH
Confidence 678888888864322111 11224677888888999887654688999999998753
No 109
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=64.01 E-value=18 Score=28.36 Aligned_cols=57 Identities=11% Similarity=0.247 Sum_probs=38.9
Q ss_pred cEEEEEecCCCcccc---------C--cccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh
Q psy786 107 NLCVIFDINRLGQSE---------P--TSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 107 ~liiV~~nn~~~~~~---------~--~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~ 163 (176)
-+.+|+||..|.-.. + .........+.+.++.+|+++...+.-+.+++.+++++..+
T Consensus 18 G~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 18 GYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp CEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHH
T ss_pred CEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 377888888876421 0 00111124678888999999887755688999999998753
No 110
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=63.99 E-value=51 Score=27.72 Aligned_cols=81 Identities=19% Similarity=0.117 Sum_probs=46.8
Q ss_pred cceEEEEECCCccCCchHHHHHHH---hhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHH
Q psy786 76 SYRTYCLVGDGESAEGSIWEALHF---ASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVE 152 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~~eal~~---a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~ 152 (176)
..+.|.++-||.-..+. .+.+.. +...++++..|-+ ... .....+.++++.-|..++.++ |++
T Consensus 179 ~~~~IILLTDG~~~~~~-~~~l~~~~~a~~~~i~i~tiGi-------G~~----~d~~~L~~IA~~tgG~~~~v~--d~~ 244 (464)
T 4fx5_A 179 AIKHAILLTDGKDESET-PADLARAIQSSIGNFTADCRGI-------GED----WEPKELRKIADALLGTVGIIR--DPA 244 (464)
T ss_dssp SEEEEEEEESSCCTTSC-HHHHHHHHHHHTTTCEEEEEEE-------SSS----SCHHHHHHHHHHTTCCEEEES--SGG
T ss_pred CCCEEEEEcCCCCCCCC-hHHHHHHHHHhcCCCeEEEEEe-------CCc----cCHHHHHHHHHhCCCEEEEcC--CHH
Confidence 34688888899876432 222322 2233444222211 110 112456788888888888886 778
Q ss_pred HHHHHHHHHHhhCCCcEE
Q psy786 153 HLVKVSSFKLQKAIGCVW 170 (176)
Q Consensus 153 ~l~~al~~a~~~~~~P~l 170 (176)
++.+++.+.+.....+++
T Consensus 245 ~L~~~f~~i~~~~~s~~~ 262 (464)
T 4fx5_A 245 TLAEDFREMTAKSMGKEV 262 (464)
T ss_dssp GHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHhhchhe
Confidence 888888887754334433
No 111
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=57.71 E-value=26 Score=28.09 Aligned_cols=55 Identities=5% Similarity=0.131 Sum_probs=38.5
Q ss_pred cEEEEEecCCCccccCcccc---cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHH
Q psy786 107 NLCVIFDINRLGQSEPTSLQ---HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKL 162 (176)
Q Consensus 107 ~liiV~~nn~~~~~~~~~~~---~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~ 162 (176)
-+.+|+||..|.-.. .... .....+.+.++.+|+++...+.-+.+++.+++++..
T Consensus 62 g~aLIInN~~F~~~~-~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~ 119 (316)
T 2fp3_A 62 GVLLMVNIMDYPDQN-RRRIGAEKDSKSLIHLFQELNFTIFPYGNVNQDQFFKLLTMVT 119 (316)
T ss_dssp EEEEEEECCCCSSTT-SCCTTHHHHHHHHHHHHHHTTEEEEEECSCCHHHHHHHHHHHH
T ss_pred cEEEEEeCcccCCCC-CCCCCcHHHHHHHHHHHHHCCCEEEEccCCCHHHHHHHHHHHH
Confidence 477888888887321 1111 112467788889999988776567899999998874
No 112
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=55.03 E-value=49 Score=23.39 Aligned_cols=34 Identities=6% Similarity=0.011 Sum_probs=22.1
Q ss_pred HHHHHHHhhcCceEEEecCC---CHHHHHHHHHHHHh
Q psy786 130 EVYRKRLDAFGFNAVVVDGH---DVEHLVKVSSFKLQ 163 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vdG~---d~~~l~~al~~a~~ 163 (176)
.+..++++.+|++++.+... +.+++.+.+.+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 150 VEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp HHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 45567788889999988544 45555555555443
No 113
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=54.32 E-value=29 Score=27.60 Aligned_cols=55 Identities=9% Similarity=0.047 Sum_probs=37.5
Q ss_pred EEEEEecCCCccccCc-ccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHH
Q psy786 108 LCVIFDINRLGQSEPT-SLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKL 162 (176)
Q Consensus 108 liiV~~nn~~~~~~~~-~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~ 162 (176)
+.+|++|..|.-.... ........+.+.++.+|+++...+.-+.+++.+++++..
T Consensus 62 ~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~ 117 (302)
T 3e4c_A 62 LALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAFA 117 (302)
T ss_dssp EEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred EEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHH
Confidence 7788888888521110 001112467788889999988765468899999999864
No 114
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=51.62 E-value=40 Score=27.89 Aligned_cols=77 Identities=13% Similarity=-0.007 Sum_probs=45.1
Q ss_pred cceEEEEECCCccCCch-HHHHHHHhhhc-----------CCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCc--
Q psy786 76 SYRTYCLVGDGESAEGS-IWEALHFASYY-----------KLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGF-- 141 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~-~~eal~~a~~~-----------~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~-- 141 (176)
.++++.++.||....|. ..++...+... +-.+.++++- +.. ......+.++|..-|.
T Consensus 113 ~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~ig-----vG~----~~~~~~L~~iA~~~~g~~ 183 (497)
T 1rrk_A 113 TRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFG-----VGP----LVNQVNINALASKKDNEQ 183 (497)
T ss_dssp CEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC-CCCGGGEEEEEEE-----CSS----SCCHHHHHHHSCCCTTCC
T ss_pred cceEEEEEeCCCcccCCChhHHHHHHHHHhhhhcccccchhcCeeEEEec-----CCC----ccCHHHHHHHhcCCCCcc
Confidence 35789999999876542 22333333322 0122233321 111 1123457788887776
Q ss_pred eEEEecCCCHHHHHHHHHHHHh
Q psy786 142 NAVVVDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 142 ~~~~vdG~d~~~l~~al~~a~~ 163 (176)
+++.++ |.++|.+.+++.++
T Consensus 184 ~~~~~~--~~~~l~~~~~~~i~ 203 (497)
T 1rrk_A 184 HVCKVK--DMECLEDVFYQMID 203 (497)
T ss_dssp CEEETT--CHHHHHHHHHHHSC
T ss_pred eEEEeC--CHHHHhhhhhhccc
Confidence 788886 89999999987654
No 115
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=49.07 E-value=80 Score=28.97 Aligned_cols=103 Identities=10% Similarity=-0.030 Sum_probs=57.5
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccCC--chHHHH----HHHh-h----hcCCCcEEEEEecCCCccccCccccc
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAE--GSIWEA----LHFA-S----YYKLDNLCVIFDINRLGQSEPTSLQH 127 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~--G~~~ea----l~~a-~----~~~lp~liiV~~nn~~~~~~~~~~~~ 127 (176)
.+++.|+++.-+ ..++... +.|.. ....+. +..+ + +++++.+.+|....+++.......-+
T Consensus 503 ~gia~Glal~G~-------~~f~~t~-atFl~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~~GeDGpTHQ 574 (845)
T 3ahc_A 503 EGFLEAYLLTGR-------HGIWSSY-ESFVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQ 574 (845)
T ss_dssp HHHHHHHHHTTC-------EEEEEEE-HHHHGGGHHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGGCTTTCGGGC
T ss_pred HHHHHHHHhcCC-------CCceecc-hhhhchhhhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCCceeecCCCCCCC
Confidence 446778887532 2222222 56653 334444 4444 2 24675577888888776643222222
Q ss_pred ccHHHHHHHhhc------CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 128 QTEVYRKRLDAF------GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 128 ~~~~~~~~a~a~------G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
.+.+...+... ++.+++ -.|..++..+++.|++..+.|.+|-
T Consensus 575 -~~e~~d~l~~~r~~~iPn~~V~~--PaDanet~~a~~~al~~~~~~~v~v 622 (845)
T 3ahc_A 575 -DPGVTSLLINKTFNNDHVTNIYF--ATDANMLLAISEKCFKSTNKINAIF 622 (845)
T ss_dssp -CCTHHHHHGGGCCTTCCCEEEEE--CCSHHHHHHHHHHHHHCBSCEEEEE
T ss_pred -CcHHHHHHHHhhccCCCCeEEEe--CCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 22233344443 455553 2489999999999986556666653
No 116
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Probab=48.67 E-value=31 Score=24.18 Aligned_cols=41 Identities=20% Similarity=0.068 Sum_probs=24.0
Q ss_pred HHHHHhhcCceEEE--ecCCCH--HHHHHHHHHHHhhCCCcEEEE
Q psy786 132 YRKRLDAFGFNAVV--VDGHDV--EHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 132 ~~~~a~a~G~~~~~--vdG~d~--~~l~~al~~a~~~~~~P~lI~ 172 (176)
..+.++..|.+++. +|..++ +++.++++...+...+++||+
T Consensus 59 ~~~~~~~~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~dVLVn 103 (157)
T 3gxh_A 59 EGKLVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGKDVLVH 103 (157)
T ss_dssp HHHHHHHTTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 34455566666553 465566 777777766654334477764
No 117
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=48.12 E-value=42 Score=22.81 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=18.3
Q ss_pred hcCceEEEecCCCHHHHHHHHHHHHhhC-----CCcEEEEe
Q psy786 138 AFGFNAVVVDGHDVEHLVKVSSFKLQKA-----IGCVWIQR 173 (176)
Q Consensus 138 a~G~~~~~vdG~d~~~l~~al~~a~~~~-----~~P~lI~~ 173 (176)
.|+.-.+.....|++++.+.|++-++++ +.|++|++
T Consensus 14 ~~~l~vl~l~~~d~~~l~~~L~~ki~~aP~FF~~aPVVlDl 54 (120)
T 3ghf_A 14 SFTLSVVHLHEAEPEVIRQALEDKIAQAPAFLKHAPVVINV 54 (120)
T ss_dssp CCCCEEEEEESCCHHHHHHHHHHHHHHSHHHHTTCEEEEEE
T ss_pred eeeEEEEEeCCCCHHHHHHHHHHHHHhChHhhCCCcEEEEc
Confidence 3445455554455655555555554432 34666554
No 118
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}
Probab=47.10 E-value=23 Score=30.48 Aligned_cols=43 Identities=19% Similarity=0.054 Sum_probs=28.5
Q ss_pred cceEEEEECCCccCCch--------HHHHHHHhhhcCCCcEEEEEecCCCcc
Q psy786 76 SYRTYCLVGDGESAEGS--------IWEALHFASYYKLDNLCVIFDINRLGQ 119 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~--------~~eal~~a~~~~lp~liiV~~nn~~~~ 119 (176)
+++|+++.-|..++.|. ...++..|.+.++| +|.+.++.+-.+
T Consensus 90 Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~~P-~I~l~~SGGaRm 140 (522)
T 1x0u_A 90 GRTVFAYAQDFTVLGGSLGETHANKIVRAYELALKVGAP-VVGINDSGGARI 140 (522)
T ss_dssp TEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCC-EEEEECCCSBCG
T ss_pred CEEEEEEEecCceeCccccHHHHHHHHHHHHHHHHcCCC-EEEEEcCCCCCh
Confidence 46788888888877665 34455677778888 555566555444
No 119
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=45.46 E-value=24 Score=26.31 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=26.9
Q ss_pred cceEEEEECCCccC-CchHHHHHHHhh-hcCCCcEEEEEe
Q psy786 76 SYRTYCLVGDGESA-EGSIWEALHFAS-YYKLDNLCVIFD 113 (176)
Q Consensus 76 ~~~vv~~~GDG~~~-~G~~~eal~~a~-~~~lp~liiV~~ 113 (176)
.+.+|+++|+=.-. ....| ++..|. +.++|+ |+|.-
T Consensus 80 Sk~vIllIs~~T~~s~~v~w-EIe~Ai~~~~~PI-I~Vy~ 117 (189)
T 3hyn_A 80 SKNIILFLSSITANSRALRE-EMNYGIGTKGLPV-IVIYP 117 (189)
T ss_dssp EEEEEEECCTTCCCCHHHHH-HHHHHTTTTCCCE-EEEET
T ss_pred cCcEEEEEecCccccchhHH-HHHHHHHhcCCcE-EEEEC
Confidence 45799999999875 44455 599999 999994 44443
No 120
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*
Probab=44.74 E-value=28 Score=29.98 Aligned_cols=43 Identities=14% Similarity=0.003 Sum_probs=26.7
Q ss_pred cceEEEEECCCccCCchH--------HHHHHHhhhcCCCcEEEEEecCCCcc
Q psy786 76 SYRTYCLVGDGESAEGSI--------WEALHFASYYKLDNLCVIFDINRLGQ 119 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~--------~eal~~a~~~~lp~liiV~~nn~~~~ 119 (176)
+++|+++.-|..++.|.. ..++..|.+.++| +|.+.++.+-.+
T Consensus 94 Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~lP-~I~l~~SGGARm 144 (523)
T 1on3_A 94 GRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTP-FLFFYDSGGARI 144 (523)
T ss_dssp TEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCC-EEEEEEECSBCG
T ss_pred CEEEEEEEEcCCccCCcCcHHHHHHHHHHHHHHHHcCCC-EEEEEcCCCCCh
Confidence 466777777777766542 3445566677777 455566555443
No 121
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=43.14 E-value=45 Score=26.75 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=24.3
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEe
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQR 173 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~ 173 (176)
..|++..+.|. +.+.+...++.| ++.+.|++|++
T Consensus 25 ~~yAV~AfNv~--n~e~~~Avl~AA-ee~~sPvIlq~ 58 (306)
T 3pm6_A 25 HSFAIPAICVY--NLEGILAIIRAA-EHKRSPAMILL 58 (306)
T ss_dssp TTCCEEEEECS--SHHHHHHHHHHH-HHTTCCEEEEE
T ss_pred CCcEEEEEeeC--CHHHHHHHHHHH-HHhCCCEEEEc
Confidence 45666666664 787788777766 56788888875
No 122
>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A*
Probab=42.89 E-value=30 Score=28.75 Aligned_cols=23 Identities=9% Similarity=-0.104 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEee
Q psy786 152 EHLVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 152 ~~l~~al~~a~~~~~~P~lI~~~ 174 (176)
.+.++.+++|+.+...|++++.|
T Consensus 181 ~~~Y~~m~~aL~~~~~~i~~~~C 203 (417)
T 1szn_A 181 AERFGAMRNALAKQSHEIVLSMC 203 (417)
T ss_dssp HHHHHHHHHHHHTSSSCCEEEEC
T ss_pred HHHHHHHHHHHHHhCCCEEEEeC
Confidence 56778888888766678888875
No 123
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=42.82 E-value=37 Score=26.82 Aligned_cols=10 Identities=20% Similarity=0.029 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q psy786 153 HLVKVSSFKL 162 (176)
Q Consensus 153 ~l~~al~~a~ 162 (176)
++++.+++.+
T Consensus 268 e~r~~l~~~L 277 (285)
T 2f9i_B 268 DMRQTLSEIL 277 (285)
T ss_dssp GHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 124
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=42.22 E-value=62 Score=27.03 Aligned_cols=90 Identities=11% Similarity=0.070 Sum_probs=46.6
Q ss_pred cceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc--c--------cccccHHHHHHHhhcCceEEE
Q psy786 76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT--S--------LQHQTEVYRKRLDAFGFNAVV 145 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~--~--------~~~~~~~~~~~a~a~G~~~~~ 145 (176)
+..|++++|+.+... .......+..+++|.+..--.+. .++... . ......-+.++++.|||+.+-
T Consensus 126 ~~~v~aviG~~~S~~--s~ava~i~~~~~iP~Is~~a~~~--~lsd~~~~p~~frt~psd~~~~~ai~~ll~~fgw~~V~ 201 (496)
T 3ks9_A 126 KKPIAGVIGPGSSSV--AIQVQNLLQLFDIPQIAYSATSI--DLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVS 201 (496)
T ss_dssp -CCEEEEECCSSHHH--HHHHHHHHGGGTCCEEESSCCCG--GGGCTTTCTTEEESSCCTHHHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEECCCccHH--HHHHHHHHhhcceeEECCCcCCc--cccCccCCCceEEecCChHHHHHHHHHHHHHcCCcEEE
Confidence 457999999988753 33445566788999432211000 111110 0 000112456677888988763
Q ss_pred -e--cCCCHHHHHHHHHHHHhhCCCcE
Q psy786 146 -V--DGHDVEHLVKVSSFKLQKAIGCV 169 (176)
Q Consensus 146 -v--dG~d~~~l~~al~~a~~~~~~P~ 169 (176)
+ |...-++..+.+++++++....+
T Consensus 202 li~~dd~~G~~~~~~~~~~~~~~Gi~v 228 (496)
T 3ks9_A 202 AVHTEGNYGESGMDAFKELAAQEGLSI 228 (496)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCEE
T ss_pred EEEeccHHHHHHHHHHHHHHHHcCceE
Confidence 2 31112456667777765544443
No 125
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=41.61 E-value=76 Score=21.10 Aligned_cols=33 Identities=6% Similarity=0.034 Sum_probs=21.8
Q ss_pred HHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh
Q psy786 130 EVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK 164 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~ 164 (176)
.|..--++..|++++.| ++++++.+++++..++
T Consensus 12 ~dtv~GFrLaGi~~~~v--~~~ee~~~~~~~l~~~ 44 (109)
T 2d00_A 12 PETAQGFRLAGLEGYGA--SSAEEAQSLLETLVER 44 (109)
T ss_dssp HHHHHHHHHTTSEEEEC--SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEe--CCHHHHHHHHHHHhhC
Confidence 34455566667777766 3777777777776543
No 126
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=40.61 E-value=77 Score=23.80 Aligned_cols=70 Identities=7% Similarity=-0.132 Sum_probs=38.9
Q ss_pred ceEEEEECCCccCCchHHHHHHHhhhcCCC-cEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEec---CCCHH
Q psy786 77 YRTYCLVGDGESAEGSIWEALHFASYYKLD-NLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVD---GHDVE 152 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~~eal~~a~~~~lp-~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vd---G~d~~ 152 (176)
+.+|.+.|-|+..+ ++.-+.+.+++ -++.|+.|+. . ...++|+.+|++++.++ ..+.+
T Consensus 14 ri~vl~SG~gsnl~-----all~~~~~~~~~eI~~Vis~~~-a------------~~~~~A~~~gIp~~~~~~~~~~~r~ 75 (215)
T 3da8_A 14 RLVVLASGTGSLLR-----SLLDAAVGDYPARVVAVGVDRE-C------------RAAEIAAEASVPVFTVRLADHPSRD 75 (215)
T ss_dssp EEEEEESSCCHHHH-----HHHHHSSTTCSEEEEEEEESSC-C------------HHHHHHHHTTCCEEECCGGGSSSHH
T ss_pred EEEEEEeCChHHHH-----HHHHHHhccCCCeEEEEEeCCc-h------------HHHHHHHHcCCCEEEeCcccccchh
Confidence 45566668777643 34433322343 2445555543 1 12467899999999874 12345
Q ss_pred HHHHHHHHHHhh
Q psy786 153 HLVKVSSFKLQK 164 (176)
Q Consensus 153 ~l~~al~~a~~~ 164 (176)
+..+.+.+.++.
T Consensus 76 ~~d~~~~~~l~~ 87 (215)
T 3da8_A 76 AWDVAITAATAA 87 (215)
T ss_dssp HHHHHHHHHHHT
T ss_pred hhhHHHHHHHHh
Confidence 556666666643
No 127
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A
Probab=39.85 E-value=37 Score=29.50 Aligned_cols=43 Identities=16% Similarity=-0.023 Sum_probs=28.9
Q ss_pred cceEEEEECCCccCCchH--------HHHHHHhhhcCCCcEEEEEecCCCcc
Q psy786 76 SYRTYCLVGDGESAEGSI--------WEALHFASYYKLDNLCVIFDINRLGQ 119 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~--------~eal~~a~~~~lp~liiV~~nn~~~~ 119 (176)
+++|+++.-|..++.|.. ..++..|.+.++| +|.++++.+-.+
T Consensus 107 Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~lP-~I~l~dSGGARm 157 (548)
T 2bzr_A 107 GRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRP-LIGINDGAGARI 157 (548)
T ss_dssp TEEEEEEEECTTSGGGCCCHHHHHHHHHHHHHHHHHTCC-EEEEECCCSCCG
T ss_pred CEEEEEEEEcCccccCCCChhHHHHHHHHHHHHHHcCCC-EEEEEcCCCCCc
Confidence 467888888888776652 3455677778888 556666665544
No 128
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=39.52 E-value=25 Score=21.58 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=16.6
Q ss_pred EecCCCHHHHHHHHHHHHhhC
Q psy786 145 VVDGHDVEHLVKVSSFKLQKA 165 (176)
Q Consensus 145 ~vdG~d~~~l~~al~~a~~~~ 165 (176)
+..|.|.+++.+|+++-+.++
T Consensus 6 rfrgddleafekalkemirqa 26 (85)
T 2kl8_A 6 RFRGDDLEAFEKALKEMIRQA 26 (85)
T ss_dssp EEECSSHHHHHHHHHHHHHHH
T ss_pred eecCCcHHHHHHHHHHHHHHH
Confidence 456789999999998887543
No 129
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Probab=38.13 E-value=40 Score=29.17 Aligned_cols=43 Identities=14% Similarity=0.009 Sum_probs=27.7
Q ss_pred cceEEEEECCCccCCchH--------HHHHHHhhhcCCCcEEEEEecCCCcc
Q psy786 76 SYRTYCLVGDGESAEGSI--------WEALHFASYYKLDNLCVIFDINRLGQ 119 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~--------~eal~~a~~~~lp~liiV~~nn~~~~ 119 (176)
+++|+++.-|..+..|.. ..++..|.+.++| +|.+++..+-.+
T Consensus 96 Gr~v~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~~lP-~I~l~dSgGaRm 146 (530)
T 3iav_A 96 GRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCP-VVGINDSGGARI 146 (530)
T ss_dssp TEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCC-EEEEECCCSBCG
T ss_pred CEEEEEEEECCCcceEeccHHHHHHHHHHHHHHHHcCCC-EEEEEcCCCcch
Confidence 467788888877765542 3345577777888 556666665544
No 130
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=38.11 E-value=62 Score=25.93 Aligned_cols=42 Identities=12% Similarity=0.054 Sum_probs=32.7
Q ss_pred HHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786 130 EVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI 171 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI 171 (176)
+-+.++.+++|++.+.++|...+++..++.........+++|
T Consensus 110 p~ike~l~a~gi~~l~~~G~EADDiIgTLA~~a~~~g~~V~I 151 (305)
T 3h7i_A 110 KVIDELKAYMPYIVMDIDKYEANDHIAVLVKKFSLEGHKILI 151 (305)
T ss_dssp HHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHCCCCEEccCCccHHHHHHHHHHHHHHCCCcEEE
Confidence 346778999999999999999999998887665444455554
No 131
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=38.08 E-value=1.4e+02 Score=24.97 Aligned_cols=89 Identities=11% Similarity=0.110 Sum_probs=46.5
Q ss_pred cceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc--c---cccc-----cHHHHHHHhhcCceEEE
Q psy786 76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT--S---LQHQ-----TEVYRKRLDAFGFNAVV 145 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~--~---~~~~-----~~~~~~~a~a~G~~~~~ 145 (176)
+..|++++|+.+... .......+..+++|.+..--.+. .++... . ...+ ..-+.++++.|||+.+-
T Consensus 115 ~~~v~aviG~~~S~~--s~~va~~~~~~~iP~Is~~a~~~--~lsd~~~~p~~fr~~p~d~~~~~a~~~ll~~fgw~~V~ 190 (555)
T 2e4u_A 115 PLLIAGVIGGSYSSV--SIQVANLLRLFQIPQISYASTSA--KLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVS 190 (555)
T ss_dssp CCCEEEEEECSSHHH--HHHHHHHHGGGTCCEEESSCCCG--GGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEECCCCcHH--HHHHHHHHhCcCCceEeCCcCCC--ccCCcccCCCceeeCCChHHHHHHHHHHHHHcCCeEEE
Confidence 346999999877652 33334566788999432211110 111110 0 0001 12355677788998663
Q ss_pred -e--cCCCHHHHHHHHHHHHhhCCCc
Q psy786 146 -V--DGHDVEHLVKVSSFKLQKAIGC 168 (176)
Q Consensus 146 -v--dG~d~~~l~~al~~a~~~~~~P 168 (176)
+ |...-....+.+++.+++....
T Consensus 191 ii~~d~~~g~~~~~~~~~~~~~~gi~ 216 (555)
T 2e4u_A 191 TVASEGDYGETGIEAFEQEARLRNIC 216 (555)
T ss_dssp EEEESSTTHHHHHHHHHHHHHTTTCE
T ss_pred EEEeeChHHHHHHHHHHHHHHHCCcc
Confidence 2 4333456677777776544443
No 132
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=38.03 E-value=1.2e+02 Score=22.28 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=25.9
Q ss_pred cHHHHHHHhhcCceEEEe---cCCCHHHHHHHHHHHH
Q psy786 129 TEVYRKRLDAFGFNAVVV---DGHDVEHLVKVSSFKL 162 (176)
Q Consensus 129 ~~~~~~~a~a~G~~~~~v---dG~d~~~l~~al~~a~ 162 (176)
..+..++|+.+|+.++++ +|.+++++...+.+.+
T Consensus 138 ~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 138 IEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp HHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC
T ss_pred HHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHH
Confidence 456678889999999887 4778888877776554
No 133
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=37.42 E-value=1.2e+02 Score=22.53 Aligned_cols=71 Identities=13% Similarity=0.001 Sum_probs=38.0
Q ss_pred ceEEEEECCCccCCchHHHHHHHhhhcCCCc-EEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecC---CCHH
Q psy786 77 YRTYCLVGDGESAEGSIWEALHFASYYKLDN-LCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDG---HDVE 152 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~-liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG---~d~~ 152 (176)
+.+|.+.|.|++.. ...+++ ...+++. ++.|+-|+.- ....++|+.+|++++.++- .+.+
T Consensus 5 ki~vl~sG~g~~~~-~~l~~l---~~~~l~~~I~~Vit~~~~------------~~v~~~A~~~gIp~~~~~~~~~~~~~ 68 (212)
T 3av3_A 5 RLAVFASGSGTNFQ-AIVDAA---KRGDLPARVALLVCDRPG------------AKVIERAARENVPAFVFSPKDYPSKA 68 (212)
T ss_dssp EEEEECCSSCHHHH-HHHHHH---HTTCCCEEEEEEEESSTT------------CHHHHHHHHTTCCEEECCGGGSSSHH
T ss_pred EEEEEEECCcHHHH-HHHHHH---HhCCCCCeEEEEEeCCCC------------cHHHHHHHHcCCCEEEeCcccccchh
Confidence 56788889888754 233333 2222321 3344443210 1345788999999987642 2344
Q ss_pred HHHHHHHHHHh
Q psy786 153 HLVKVSSFKLQ 163 (176)
Q Consensus 153 ~l~~al~~a~~ 163 (176)
+..+.+.+.++
T Consensus 69 ~~~~~~~~~l~ 79 (212)
T 3av3_A 69 AFESEILRELK 79 (212)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 44445555553
No 134
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=36.39 E-value=46 Score=24.46 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh
Q psy786 130 EVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~ 163 (176)
.-..++|+-+|++++.+. ...+.+.+|+++|++
T Consensus 150 ~~~~~~A~~~Gl~~vli~-sg~eSI~~Ai~eA~~ 182 (196)
T 2q5c_A 150 KTVTDEAIKQGLYGETIN-SGEESLRRAIEEALN 182 (196)
T ss_dssp HHHHHHHHHTTCEEEECC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEEe-cCHHHHHHHHHHHHH
Confidence 345788999999999996 358999999999975
No 135
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=36.15 E-value=73 Score=22.44 Aligned_cols=77 Identities=9% Similarity=0.071 Sum_probs=42.7
Q ss_pred cceEEEEECCCccCCch--HHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCce-EEEecCCCHH
Q psy786 76 SYRTYCLVGDGESAEGS--IWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFN-AVVVDGHDVE 152 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~--~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~-~~~vdG~d~~ 152 (176)
.++++.++-||.-..+. ..+++..+...++.+..|-+-+.. ........+.++|..-|.. ++.++ |.+
T Consensus 110 ~~~~iillTDG~~~~~~~~~~~~~~~~~~~gi~i~~igvG~~~-------~~~~~~~~L~~iA~~~~g~~~~~~~--~~~ 180 (198)
T 1n3y_A 110 AAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAF-------QNRNSWKELNDIASKPSQEHIFKVE--DFD 180 (198)
T ss_dssp SEEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGGG-------GSSTTHHHHHHHSCSSSGGGEEEES--SGG
T ss_pred CceEEEEECCCCCCCCcccHHHHHHHHHHCCCEEEEEEccccc-------cccccHHHHHHHHcCCCcccEEEeC--CHH
Confidence 46789999999876332 245566666777764333332110 0001124566777766554 46775 556
Q ss_pred HHHHHHHHH
Q psy786 153 HLVKVSSFK 161 (176)
Q Consensus 153 ~l~~al~~a 161 (176)
+|.+.+++.
T Consensus 181 ~l~~~~~~i 189 (198)
T 1n3y_A 181 ALKDIQNQL 189 (198)
T ss_dssp GGGGGHHHH
T ss_pred HHHHHHHHH
Confidence 666555443
No 136
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=35.93 E-value=47 Score=23.90 Aligned_cols=32 Identities=16% Similarity=0.015 Sum_probs=13.3
Q ss_pred HHHHHHHhhcCc--eEEEecCCCHHHHHHHHHHHHh
Q psy786 130 EVYRKRLDAFGF--NAVVVDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 130 ~~~~~~a~a~G~--~~~~vdG~d~~~l~~al~~a~~ 163 (176)
..+.++|..-|. +++.++ |.++|.+++++.++
T Consensus 184 ~~L~~iA~~~~G~~~~~~~~--~~~~L~~~~~~i~~ 217 (223)
T 1q0p_A 184 VNINALASKKDNEQHVFKVK--DMENLEDVFYQMID 217 (223)
T ss_dssp HHHHHHSCCCTTCCCEEETT--C-------------
T ss_pred HHHHHHhcCCCCCceEEEcC--CHHHHHHHHHHHhc
Confidence 456777777765 777875 78889888887764
No 137
>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125}
Probab=35.75 E-value=49 Score=27.52 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=30.9
Q ss_pred HHHHHhhcCceEEEecCCCH-------HHHHHHHHHHHhhCCCcEEEEe
Q psy786 132 YRKRLDAFGFNAVVVDGHDV-------EHLVKVSSFKLQKAIGCVWIQR 173 (176)
Q Consensus 132 ~~~~a~a~G~~~~~vdG~d~-------~~l~~al~~a~~~~~~P~lI~~ 173 (176)
+.+..+..|+.++++|.... .+..+++++|+++..+|+++..
T Consensus 169 ~~~~l~~~GvDyvK~D~~~~~~~~~~~~~~~~~~~~aL~~~gr~i~~sl 217 (433)
T 3cc1_A 169 LFELYAQWGVDFVKVDDIAASRLYDTHLEEIKMIQRAIQACGRPMVLSL 217 (433)
T ss_dssp HHHHHHHTTCCEEEEESCSCTTSSCCCHHHHHHHHHHHHHSSSCCEEEC
T ss_pred HHHHHHHcCCCEEEeCCcccccCCcccHHHHHHHHHHHHhcCCCEEEEe
Confidence 45566788999999985321 3566788899877778888754
No 138
>3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for structural genomics of infec diseases, csgid, TIM beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni} SCOP: c.1.10.2
Probab=35.71 E-value=49 Score=27.09 Aligned_cols=35 Identities=26% Similarity=0.205 Sum_probs=27.3
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEee
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~ 174 (176)
..|++..+.|. +.+.+..+++.| ++.+.|++|++.
T Consensus 30 ~~yAV~AfNv~--n~e~~~Avl~AA-ee~~sPvIlq~s 64 (357)
T 3qm3_A 30 EGFAIPAVNVV--GTDSINAVLEAA-KKVNSPVIIQFS 64 (357)
T ss_dssp HTCCEEEEECC--SHHHHHHHHHHH-HHHTSCEEEEEC
T ss_pred cCceEEEEeeC--CHHHHHHHHHHH-HHhCCCEEEEcC
Confidence 46777777774 888888888877 567899999863
No 139
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=34.86 E-value=1.1e+02 Score=21.04 Aligned_cols=34 Identities=12% Similarity=0.197 Sum_probs=25.3
Q ss_pred HHHHHHHhhcCceEEEec---CCCHHHHHHHHHHHHh
Q psy786 130 EVYRKRLDAFGFNAVVVD---GHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vd---G~d~~~l~~al~~a~~ 163 (176)
.....+++.++++++.+. |.+.+++.+.+.+.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 142 TTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 178 (196)
T ss_dssp HHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 455677888899999874 6778888777766654
No 140
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=34.68 E-value=94 Score=25.73 Aligned_cols=88 Identities=9% Similarity=0.023 Sum_probs=45.3
Q ss_pred ceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc--c--------cccccHHHHHHHhhcCceEEEe
Q psy786 77 YRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT--S--------LQHQTEVYRKRLDAFGFNAVVV 146 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~--~--------~~~~~~~~~~~a~a~G~~~~~v 146 (176)
.+|++++|+.+... .......+..+++|.+..--.+. .++... . ......-+.++++.|||+.+-+
T Consensus 115 ~~v~aviG~~~S~~--s~ava~i~~~~~iP~Is~~a~~~--~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~i 190 (479)
T 3sm9_A 115 LLIAGVIGGSYSSV--SIQVANLLRLFQIPQISYASTSA--KLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVST 190 (479)
T ss_dssp -CEEEEECCSSHHH--HHHHHHHHGGGTCCEEESSCCCG--GGGCTTTTTTEEESSCCTHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEECCCCcHH--HHHHHHHHhcCCccEECCCcCCc--cccCcccCCCeEEeCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 36999999887753 33345566788999432111100 111110 0 0001123567778899987632
Q ss_pred -cCCC--HHHHHHHHHHHHhhCCCc
Q psy786 147 -DGHD--VEHLVKVSSFKLQKAIGC 168 (176)
Q Consensus 147 -dG~d--~~~l~~al~~a~~~~~~P 168 (176)
-.+| -+...+.+++++++....
T Consensus 191 i~~dd~~G~~~~~~~~~~~~~~Gi~ 215 (479)
T 3sm9_A 191 VASEGDYGETGIEAFEQEARLRNIS 215 (479)
T ss_dssp EEESSHHHHHHHHHHHHHHHTTTCE
T ss_pred EEecchhhHHHHHHHHHHHHHCCce
Confidence 1123 245666777776544433
No 141
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Probab=34.60 E-value=53 Score=26.89 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=27.0
Q ss_pred hhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEee
Q psy786 137 DAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~ 174 (176)
..|++..+.| ++.+.+..+++.| ++.+.|++|++.
T Consensus 27 ~~yAVpAfNv--~n~e~~~Avl~AA-ee~~sPvIlq~s 61 (358)
T 1dos_A 27 NNFALPAVNC--VGTDSINAVLETA-AKVKAPVIVQFS 61 (358)
T ss_dssp TTCCEEEEEC--CSHHHHHHHHHHH-HHHTCCEEEEEC
T ss_pred CCceEEEEee--CCHHHHHHHHHHH-HHhCCCEEEECC
Confidence 4667777777 4888888888877 567889999863
No 142
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=34.31 E-value=1.4e+02 Score=23.14 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=24.9
Q ss_pred HHHHHHHhh-hcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecC
Q psy786 93 IWEALHFAS-YYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDG 148 (176)
Q Consensus 93 ~~eal~~a~-~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG 148 (176)
...++..++ +.+++. ++++-.+ . ...-.+..+.+|.+++.+++
T Consensus 73 ~g~a~A~~a~~~G~~~-~iv~p~~---~---------~~~k~~~~~~~GA~v~~~~~ 116 (316)
T 1y7l_A 73 TGIALAYVAAARGYKI-TLTMPET---M---------SLERKRLLCGLGVNLVLTEG 116 (316)
T ss_dssp HHHHHHHHHHHHTCCE-EEEEETT---S---------CHHHHHHHHHTTCEEEEECG
T ss_pred HHHHHHHHHHHcCCcE-EEEECCC---C---------CHHHHHHHHHcCCEEEEeCC
Confidence 333455444 678994 4444432 1 11224567889999888864
No 143
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=33.59 E-value=1e+02 Score=22.00 Aligned_cols=35 Identities=11% Similarity=0.033 Sum_probs=26.3
Q ss_pred HHHHHHHhhcCceEEE--ecCCCHHHHHHHHHHHHhh
Q psy786 130 EVYRKRLDAFGFNAVV--VDGHDVEHLVKVSSFKLQK 164 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~--vdG~d~~~l~~al~~a~~~ 164 (176)
.-+.+..+.+|++... +-.+|.+++.+++++++++
T Consensus 31 ~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~ 67 (172)
T 1mkz_A 31 HYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIAS 67 (172)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhc
Confidence 4467778888987653 3346999999999999753
No 144
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}
Probab=33.43 E-value=55 Score=28.29 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=20.7
Q ss_pred cceEEEEECCCccCCchH--------HHHHHHhhhcCCCcEEEEEecCCC
Q psy786 76 SYRTYCLVGDGESAEGSI--------WEALHFASYYKLDNLCVIFDINRL 117 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~--------~eal~~a~~~~lp~liiV~~nn~~ 117 (176)
+++|+++.-|..+..|.. ..++..|.+.++| +|.+++..+-
T Consensus 104 Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~lP-vI~l~dSGGA 152 (531)
T 3n6r_B 104 GRVVYVFSQDFTVLGGSVSETHSKKICKIMDMAMQNGAP-VIGINDSGGA 152 (531)
T ss_dssp TEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCC-EEEEECCCCB
T ss_pred CEEEEEEEECCCcccccccHHHHHHHHHHHHHHHHcCCC-EEEEeCCCcc
Confidence 345666666666654422 2234455556666 4444454443
No 145
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=33.10 E-value=1.1e+02 Score=20.42 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=25.2
Q ss_pred cHHHHHHHhhcCceEEEec---CCCHHHHHHHHHHHHh
Q psy786 129 TEVYRKRLDAFGFNAVVVD---GHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 129 ~~~~~~~a~a~G~~~~~vd---G~d~~~l~~al~~a~~ 163 (176)
.....++++.++++++.+. |.+.+++.+.+.+.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 129 LEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIR 166 (169)
T ss_dssp HHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHH
Confidence 3456678888999998874 6677777777766553
No 146
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4
Probab=32.94 E-value=58 Score=28.06 Aligned_cols=43 Identities=16% Similarity=0.056 Sum_probs=25.6
Q ss_pred cceEEEEECCCccCCchH--------HHHHHHhhhcCCCcEEEEEecCCCcc
Q psy786 76 SYRTYCLVGDGESAEGSI--------WEALHFASYYKLDNLCVIFDINRLGQ 119 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~--------~eal~~a~~~~lp~liiV~~nn~~~~ 119 (176)
+++|+++.-|..++.|.. ..++..|.+.++| +|.++++.+-.+
T Consensus 97 Gr~v~v~a~D~t~~gGS~g~~~~~Ki~r~~e~A~~~~lP-vI~l~dSgGAR~ 147 (527)
T 1vrg_A 97 GRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMGIP-VIGINDSGGARI 147 (527)
T ss_dssp TEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCC-EEEEEEECSBCG
T ss_pred CEEEEEEEEeccccCccccHHHHHHHHHHHHHHHHcCCC-EEEEECCCCCCc
Confidence 456777777766655532 3345566677777 455566565443
No 147
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=32.68 E-value=1.4e+02 Score=23.81 Aligned_cols=60 Identities=18% Similarity=0.249 Sum_probs=29.6
Q ss_pred CCccccCCcccchhHHHHHHHHHhchh-cCCCcceEEEEECCCccCCchHHHHHHHhhhcCCC
Q psy786 45 LNFIDVGTGSLGQGLSVAAGMAYVGKY-FDKASYRTYCLVGDGESAEGSIWEALHFASYYKLD 106 (176)
Q Consensus 45 ~~~~~~~~g~~G~~l~~AvG~A~a~~~-~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp 106 (176)
.|.++...| -+.+.-.++-=.+..+. .+.-++..|+++||+.-.- ....-+..+.+++..
T Consensus 123 vPVINag~g-~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD~~~~r-va~Sl~~~~~~~G~~ 183 (308)
T 1ml4_A 123 VPVINAGDG-SNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDLKYGR-TVHSLAEALTFYDVE 183 (308)
T ss_dssp SCEEEEEET-TSCCHHHHHHHHHHHHHHSSCSSSEEEEEESCTTTCH-HHHHHHHHGGGSCEE
T ss_pred CCEEeCccC-CccCcHHHHHHHHHHHHHhCCCCCeEEEEeCCCCcCc-hHHHHHHHHHHCCCE
Confidence 455554333 23444444443333221 1333568899999985421 334334455566544
No 148
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=32.67 E-value=90 Score=24.21 Aligned_cols=63 Identities=11% Similarity=0.162 Sum_probs=35.4
Q ss_pred ceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----cccccHHHHHHHhhcCceEEEe
Q psy786 77 YRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS-----LQHQTEVYRKRLDAFGFNAVVV 146 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~-----~~~~~~~~~~~a~a~G~~~~~v 146 (176)
..|++++|..+... .......+..+++|.+.. ....+...+ ......-+.++.+.|||+.+.+
T Consensus 68 ~~V~aiiG~~~S~~--~~~v~~i~~~~~ip~is~-----~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~w~~vai 135 (389)
T 4gpa_A 68 RGVFAIFGLYDKRS--VHTLTSFCSALHISLITP-----SFPTEGESQFVLQLRPSLRGALLSLLDHYEWNCFVF 135 (389)
T ss_dssp TTCSEEEECCCTTT--HHHHHHHHHHTTCEEEEC-----SCCCSSCCSSEEECSCCCHHHHHHHHHHTTCCEEEE
T ss_pred cCCEEEEeCCccHH--HHHHHHHHHHhCCCceec-----cccccccccCCccccCCHHHHHHHHHHHcCCcEEEE
Confidence 35888999877653 334456677888884321 111111110 0112245677889999987743
No 149
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*
Probab=32.66 E-value=1.5e+02 Score=24.50 Aligned_cols=57 Identities=7% Similarity=-0.036 Sum_probs=37.3
Q ss_pred EEEEEecCCCccccCccc-ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh
Q psy786 108 LCVIFDINRLGQSEPTSL-QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK 164 (176)
Q Consensus 108 liiV~~nn~~~~~~~~~~-~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~ 164 (176)
+.+|+.|+.|.-...... ......+.+.++.+|+++.....-+.+++.+++++..++
T Consensus 7 ~ALIIGn~~Y~~~~~L~ga~~DA~~L~~~L~~lGF~V~~l~DlT~~eI~~aL~~f~~~ 64 (390)
T 3uoa_B 7 VALLIGNMNYREHPKLKAPLVDVYELTNLLRQLDFKVVSLLDLTEYEMRNAVDEFLLL 64 (390)
T ss_dssp EEEEEECCCCSSSCCCSTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHT
T ss_pred EEEEEEecCCCCcccCCChHHHHHHHHHHHHHcCCeEEEeecCCHHHHHHHHHHHHhh
Confidence 567888888875321111 111235667777889998765436789999999887643
No 150
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=32.33 E-value=1.7e+02 Score=23.25 Aligned_cols=57 Identities=12% Similarity=-0.087 Sum_probs=30.6
Q ss_pred CCccccCCcccchhHHHHHHHHHhchh-cCCCcceEEEEECCCccCCchHHHHHHHhhhcCCC
Q psy786 45 LNFIDVGTGSLGQGLSVAAGMAYVGKY-FDKASYRTYCLVGDGESAEGSIWEALHFASYYKLD 106 (176)
Q Consensus 45 ~~~~~~~~g~~G~~l~~AvG~A~a~~~-~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp 106 (176)
+|.++..++ +.+.-.++-=.+..+. .+.-++..|+++||+ -. ....-+..+++++..
T Consensus 124 vPVINa~~~--~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~-~r--va~Sl~~~~~~~g~~ 181 (315)
T 1pvv_A 124 VPVINGLSD--FSHPCQALADYMTIWEKKGTIKGVKVVYVGDG-NN--VAHSLMIAGTKLGAD 181 (315)
T ss_dssp SCEEEEECS--SCCHHHHHHHHHHHHHHHSCCTTCEEEEESCC-CH--HHHHHHHHHHHTTCE
T ss_pred CCEEcCCCC--CCCcHHHHHHHHHHHHHhCCcCCcEEEEECCC-cc--hHHHHHHHHHHCCCE
Confidence 455554333 5556555543333221 133356889999998 22 344444555566654
No 151
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=32.23 E-value=1.7e+02 Score=23.44 Aligned_cols=58 Identities=9% Similarity=-0.032 Sum_probs=30.5
Q ss_pred CCccccCCcccchhHHHHHHHHHhchh-cCCCcceEEEEECCCccCCchHHHHHHHhhhcCCC
Q psy786 45 LNFIDVGTGSLGQGLSVAAGMAYVGKY-FDKASYRTYCLVGDGESAEGSIWEALHFASYYKLD 106 (176)
Q Consensus 45 ~~~~~~~~g~~G~~l~~AvG~A~a~~~-~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp 106 (176)
+|.++..++ +.....++-=.+..+. .+.-++..|+++||+-- .....-+..+++++..
T Consensus 136 vPVINa~~~--~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~~~--rva~Sl~~~~~~~G~~ 194 (325)
T 1vlv_A 136 VPVYNGLTD--EFHPTQALADLMTIEENFGRLKGVKVVFMGDTRN--NVATSLMIACAKMGMN 194 (325)
T ss_dssp SCEEESCCS--SCCHHHHHHHHHHHHHHHSCSTTCEEEEESCTTS--HHHHHHHHHHHHTTCE
T ss_pred CCEEeCCCC--CCCcHHHHHHHHHHHHHhCCcCCcEEEEECCCCc--CcHHHHHHHHHHCCCE
Confidence 455554333 5555555543333221 13335688999999722 2344445555566654
No 152
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=32.17 E-value=1.1e+02 Score=21.56 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCceEEE--ecCCCHHHHHHHHHHHHh
Q psy786 130 EVYRKRLDAFGFNAVV--VDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~--vdG~d~~~l~~al~~a~~ 163 (176)
.-+.++.+.+|++... +-.+|++++.++++++++
T Consensus 24 ~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~ 59 (164)
T 2is8_A 24 LAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWAD 59 (164)
T ss_dssp HHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHh
Confidence 4567788888987652 324599999999999975
No 153
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=32.05 E-value=1.3e+02 Score=21.18 Aligned_cols=34 Identities=12% Similarity=0.151 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCceEEE--ecCCCHHHHHHHHHHHHh
Q psy786 130 EVYRKRLDAFGFNAVV--VDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~--vdG~d~~~l~~al~~a~~ 163 (176)
.-+.+..+.+|++... +-++|++++.++++++++
T Consensus 34 ~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~ 69 (169)
T 1y5e_A 34 QLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYH 69 (169)
T ss_dssp HHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHh
Confidence 4567778888987653 334699999999999974
No 154
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=31.96 E-value=25 Score=24.38 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=18.3
Q ss_pred CceEEEecCCCHHHHHHHHHHHHhh
Q psy786 140 GFNAVVVDGHDVEHLVKVSSFKLQK 164 (176)
Q Consensus 140 G~~~~~vdG~d~~~l~~al~~a~~~ 164 (176)
|.-.++..|+|.+++.+|+++-+.+
T Consensus 83 gvm~i~f~gddlea~ekalkemirq 107 (170)
T 4hhu_A 83 GVMVIVFEGDDLEALEKALKEMIRQ 107 (170)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred eEEEEEEecCcHHHHHHHHHHHHHH
Confidence 4445566788999999998877643
No 155
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=31.74 E-value=1.7e+02 Score=23.48 Aligned_cols=58 Identities=12% Similarity=-0.084 Sum_probs=31.5
Q ss_pred CCccccCCcccchhHHHHHHHHHhchhc--C-CCcceEEEEECCCccCCchHHHHHHHhhhcCCC
Q psy786 45 LNFIDVGTGSLGQGLSVAAGMAYVGKYF--D-KASYRTYCLVGDGESAEGSIWEALHFASYYKLD 106 (176)
Q Consensus 45 ~~~~~~~~g~~G~~l~~AvG~A~a~~~~--~-~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp 106 (176)
+|.++.. .-+.+.-.++-=.+..+.. + .-++..|+++||+-.. +...-+..+++++..
T Consensus 122 vPVINa~--~~~~HPtQ~LaDl~Ti~e~~~g~~l~gl~ia~vGD~~~~--va~Sl~~~~~~~G~~ 182 (333)
T 1duv_G 122 VPVWNGL--TNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNN--MGNSMLEAAALTGLD 182 (333)
T ss_dssp SCEEESC--CSSCCHHHHHHHHHHHHHHSTTCCGGGCEEEEESCTTSH--HHHHHHHHHHHHCCE
T ss_pred CCeEcCC--CCCCCchHHHHHHHHHHHHhcCCCCCCcEEEEECCCccc--hHHHHHHHHHHcCCE
Confidence 4555432 2455566665544443321 2 2256899999998222 444445555567765
No 156
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=31.67 E-value=1.1e+02 Score=22.09 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=25.7
Q ss_pred HHHHHHHhhcCceEEE--ecCCCHHHHHHHHHHHHh
Q psy786 130 EVYRKRLDAFGFNAVV--VDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~--vdG~d~~~l~~al~~a~~ 163 (176)
.-+.++.+.+|++... +-.+|++++.++++++++
T Consensus 43 ~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~ 78 (178)
T 2pjk_A 43 DIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALS 78 (178)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh
Confidence 4467788888987663 224599999999999874
No 157
>1j3l_A Demethylmenaquinone methyltransferase; vitamine K2, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Thermus thermophilus} SCOP: c.8.7.1
Probab=31.52 E-value=78 Score=22.75 Aligned_cols=45 Identities=22% Similarity=0.170 Sum_probs=27.4
Q ss_pred cEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecC--CCHHHHHH
Q psy786 107 NLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDG--HDVEHLVK 156 (176)
Q Consensus 107 ~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG--~d~~~l~~ 156 (176)
--++|+++.+-. ....-....+..++..||.++.+|| .|.+++.+
T Consensus 57 G~VlVvd~~g~~-----~~a~~G~~la~~a~~~G~~GiVidG~vRD~~~i~~ 103 (164)
T 1j3l_A 57 GQVLFVDGGGSL-----RTALLGGNLARRAWEKGWAGVVVHGAVRDTEELRE 103 (164)
T ss_dssp TEEEEEECTTCC-----SSBSCCHHHHHHHHHTTBCEEEEESEECCHHHHTT
T ss_pred CcEEEEECCCCC-----CceeehHHHHHHHHHCCCeEEEecCcccCHHHHhc
Confidence 356667754321 1111124567778888999998887 57766653
No 158
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=31.40 E-value=1.1e+02 Score=21.71 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCceEEE--ecCCCHHHHHHHHHHHHh
Q psy786 130 EVYRKRLDAFGFNAVV--VDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~--vdG~d~~~l~~al~~a~~ 163 (176)
+-+++..+..|++++. +=++|++++.++++++..
T Consensus 43 ~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a 78 (178)
T 3iwt_A 43 DIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALS 78 (178)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh
Confidence 4467888889998763 334599999999998753
No 159
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=31.28 E-value=84 Score=22.75 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=26.3
Q ss_pred HHHHHHHhhcCceEEE--ecCCCHHHHHHHHHHHHhh
Q psy786 130 EVYRKRLDAFGFNAVV--VDGHDVEHLVKVSSFKLQK 164 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~--vdG~d~~~l~~al~~a~~~ 164 (176)
.-+++..+..|++... +=++|++++.+++++++++
T Consensus 26 ~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~ 62 (172)
T 3kbq_A 26 AFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEV 62 (172)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhc
Confidence 4567778888987663 3346999999999998754
No 160
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=31.27 E-value=1.6e+02 Score=23.30 Aligned_cols=58 Identities=10% Similarity=-0.123 Sum_probs=31.5
Q ss_pred CCccccCCcccchhHHHHHHHHHhchh-cCCCcceEEEEECCCccCCchHHHHHHHhhhcCCC
Q psy786 45 LNFIDVGTGSLGQGLSVAAGMAYVGKY-FDKASYRTYCLVGDGESAEGSIWEALHFASYYKLD 106 (176)
Q Consensus 45 ~~~~~~~~g~~G~~l~~AvG~A~a~~~-~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp 106 (176)
.|.++.. .-+.+...++-=.+..+. .+.-++..|+++||+ - ......-+..+.+++..
T Consensus 117 vPVINa~--~~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~-~-~rva~Sl~~~~~~~g~~ 175 (307)
T 2i6u_A 117 VPVINAL--SDEFHPCQVLADLQTIAERKGALRGLRLSYFGDG-A-NNMAHSLLLGGVTAGIH 175 (307)
T ss_dssp SCEEESC--CSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCT-T-SHHHHHHHHHHHHTTCE
T ss_pred CCEEcCC--CCCcCccHHHHHHHHHHHHhCCcCCeEEEEECCC-C-cCcHHHHHHHHHHCCCE
Confidence 4555532 355666666544433321 133356899999998 2 12444445555567654
No 161
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=31.09 E-value=1.8e+02 Score=22.33 Aligned_cols=66 Identities=20% Similarity=0.070 Sum_probs=42.5
Q ss_pred cceEEEEECCCccCCc-hHHHHHHHhhhcCCCcEEEEE-ecCCCccccCcccccccHHHHHHHhhcCceEEEecC
Q psy786 76 SYRTYCLVGDGESAEG-SIWEALHFASYYKLDNLCVIF-DINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDG 148 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G-~~~eal~~a~~~~lp~liiV~-~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG 148 (176)
..+++.++-||.-..| .-.++...|+.+++.+-+|=+ +.+.++- .....+.++|++-|..++.++.
T Consensus 9 ~~k~iillTDG~~~~g~~p~~aa~~a~~~gi~v~tIGig~~~~~~~-------~~~~~L~~IA~~tGG~yf~a~~ 76 (242)
T 3rag_A 9 TIRQILVITDGCSNIGPDPVEAARRAHRHGIVVNVIGIVGRGDAGE-------QGYQEAHSIADAGGGMCRIVQP 76 (242)
T ss_dssp CEEEEEEEESSCCCSSSCHHHHHHHHHHTTCEEEEEEECCSSSCTT-------CCCHHHHHHHHHTTSCEEEECG
T ss_pred CccEEEEEccCCCCCCCCHHHHHHHHHHCCCEEEEEEecCCccccc-------hhHHHHHHHHHhcCCeEEEeeH
Confidence 4578888899985432 345666778888876444433 2222211 1234588999999999999953
No 162
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=30.85 E-value=1.6e+02 Score=22.86 Aligned_cols=43 Identities=21% Similarity=0.162 Sum_probs=25.1
Q ss_pred HHHHHHHhh-hcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecC
Q psy786 93 IWEALHFAS-YYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDG 148 (176)
Q Consensus 93 ~~eal~~a~-~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG 148 (176)
...++..++ +.+++. ++++-.+- ...-.+..+++|.+++.+++
T Consensus 78 ~g~alA~aa~~~G~~~-~iv~p~~~------------~~~k~~~~~~~GA~V~~~~~ 121 (322)
T 1z7w_A 78 TGVGLAFTAAAKGYKL-IITMPASM------------STERRIILLAFGVELVLTDP 121 (322)
T ss_dssp HHHHHHHHHHHHTCEE-EEEEETTS------------CHHHHHHHHHTTCEEEEECG
T ss_pred HHHHHHHHHHHcCCCE-EEEeCCCC------------CHHHHHHHHHcCCEEEEeCC
Confidence 334455444 678984 44444331 12224577889999888864
No 163
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*
Probab=30.55 E-value=52 Score=29.97 Aligned_cols=43 Identities=12% Similarity=-0.059 Sum_probs=33.4
Q ss_pred cceEEEEECCCccCCchH--------HHHHHHhhhcCCCcEEEEEecCCCcc
Q psy786 76 SYRTYCLVGDGESAEGSI--------WEALHFASYYKLDNLCVIFDINRLGQ 119 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~--------~eal~~a~~~~lp~liiV~~nn~~~~ 119 (176)
+++|+++.-|-.++.|.+ ..++..|.+.++| +|.+.+|.+-.+
T Consensus 120 Gr~vvVianD~t~~gGS~g~~~~~K~~ra~elA~~~glP-~I~l~dsgGARi 170 (793)
T 2x24_A 120 GRDIILISNDITFRIGSFGPGEDLLYLRASELARAEGIP-RVYLAANSGARI 170 (793)
T ss_dssp CEEEEEEEECSSGGGGCBCHHHHHHHHHHHHHHHHHTCC-EEEEECCCCBCC
T ss_pred CeEEEEEEECCcccCCCCCHHHHHHHHHHHHHHHHcCCC-EEEEEeCCCcCc
Confidence 678999999988876654 3456788899999 667778887665
No 164
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=30.44 E-value=1.2e+02 Score=20.25 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=23.8
Q ss_pred HHHHHHHhhcCceEEEe---cCCCHHHHHHHHHHHH
Q psy786 130 EVYRKRLDAFGFNAVVV---DGHDVEHLVKVSSFKL 162 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~v---dG~d~~~l~~al~~a~ 162 (176)
.+..++++.+|++++.+ +|.+.+++.+.+.+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 141 EEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp HHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45667788889999887 4667777777665543
No 165
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=29.83 E-value=2.1e+02 Score=22.99 Aligned_cols=58 Identities=10% Similarity=-0.011 Sum_probs=31.1
Q ss_pred CCccccCCcccchhHHHHHHHHHhchh-cC-CCcceEEEEECCCccCCchHHHHHHHhhhcCCC
Q psy786 45 LNFIDVGTGSLGQGLSVAAGMAYVGKY-FD-KASYRTYCLVGDGESAEGSIWEALHFASYYKLD 106 (176)
Q Consensus 45 ~~~~~~~~g~~G~~l~~AvG~A~a~~~-~~-~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp 106 (176)
+|.++.. .-..+.-.++-=.+..+. .+ .-++..|+++||+-.. +...-+..+++++..
T Consensus 123 vPVINa~--~~~~HPtQ~LaDl~Ti~e~~g~~l~gl~va~vGD~~~~--va~Sl~~~~~~~G~~ 182 (335)
T 1dxh_A 123 VPVFNGL--TDEYHPTQMLADVLTMREHSDKPLHDISYAYLGDARNN--MGNSLLLIGAKLGMD 182 (335)
T ss_dssp SCEEEEE--CSSCCHHHHHHHHHHHHHTCSSCGGGCEEEEESCCSSH--HHHHHHHHHHHTTCE
T ss_pred CCEEcCC--CCCCCcHHHHHHHHHHHHHcCCCcCCeEEEEecCCccc--hHHHHHHHHHHcCCE
Confidence 4545432 245556555544444322 12 2256899999998222 444445555677665
No 166
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=29.20 E-value=1.3e+02 Score=23.94 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=29.3
Q ss_pred CCccccCCcccchhHHHHHHHHHhch-hcCCCcceEEEEECCCccCCchHHHHHHHhhhc-CCC
Q psy786 45 LNFIDVGTGSLGQGLSVAAGMAYVGK-YFDKASYRTYCLVGDGESAEGSIWEALHFASYY-KLD 106 (176)
Q Consensus 45 ~~~~~~~~g~~G~~l~~AvG~A~a~~-~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~-~lp 106 (176)
+|.++.+.| -..+...++-=.+..+ ..+.-++..|+++||+...- ....-+..++++ +..
T Consensus 119 vPVINag~g-~~~HPtQ~LaDl~Ti~e~~g~l~glkva~vGD~~~~r-va~Sl~~~~~~~~G~~ 180 (306)
T 4ekn_B 119 VPIINAGDG-SNQHPTQTLLDLYTIMREIGRIDGIKIAFVGDLKYGR-TVHSLVYALSLFENVE 180 (306)
T ss_dssp SCEEESCSS-SSCCHHHHHHHHHHHHHHHSCSTTCEEEEESCTTTCH-HHHHHHHHHHTSSSCE
T ss_pred CCEEeCCCC-CCcCcHHHHHHHHHHHHHhCCcCCCEEEEEcCCCCCc-HHHHHHHHHHhcCCCE
Confidence 455544333 2344444443322221 11333568899999986431 233334455566 654
No 167
>1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1
Probab=29.10 E-value=78 Score=25.44 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=32.7
Q ss_pred HHHHHHHhhcCceEEEecCC-----CHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786 130 EVYRKRLDAFGFNAVVVDGH-----DVEHLVKVSSFKLQKAIGCVWIQRGC 175 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vdG~-----d~~~l~~al~~a~~~~~~P~lI~~~~ 175 (176)
....+..+..|++++++|.. +..+-+..+.+++.+...|++++.+.
T Consensus 113 ~~~~~~~~~wGvdyvK~D~~~~~~~~~~~~y~~~~~al~~~~~~i~~~~c~ 163 (362)
T 1uas_A 113 EQDVKTFASWGVDYLKYDNCNDAGRSVMERYTRMSNAMKTYGKNIFFSLCE 163 (362)
T ss_dssp HHHHHHHHHHTCCEEEEECCCCTTCCHHHHHHHHHHHHHHHCTTSEEEEES
T ss_pred HHHHHHHHHcCCCEEEECccCCCCCCHHHHHHHHHHHHHhhCCCcEEEecC
Confidence 34566777899999999843 35566677777876666778887653
No 168
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=28.89 E-value=68 Score=23.49 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=32.9
Q ss_pred cHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786 129 TEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 129 ~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 172 (176)
.+...-.|+|||.+.+-..+.| +.+.+.++...++=.||..||
T Consensus 21 TTHV~LtARAfGA~~iil~~~D-~~v~esv~dV~~rwGG~F~ve 63 (178)
T 2o3a_A 21 STHVALTARAFGAKGIYFDTED-KSVFESVRDVVERWGGDFFIK 63 (178)
T ss_dssp HHHHHHHHHHTTCSEEEESSCC-HHHHHHHHHHHHHHCSCCEEE
T ss_pred hhHHHHHHHHhCCCeeEEeCCC-HHHHHHHHHHHHhcCCceEEE
Confidence 4567778999999999887765 467777777766667887777
No 169
>3c8o_A Regulator of ribonuclease activity A; RRAA, PAO1, RNAse E regulater, hydrolase regulator; HET: PGE PG4; 1.90A {Pseudomonas aeruginosa}
Probab=28.63 E-value=77 Score=22.72 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=26.9
Q ss_pred CcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecC--CCHHHHH
Q psy786 106 DNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDG--HDVEHLV 155 (176)
Q Consensus 106 p~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG--~d~~~l~ 155 (176)
|--++|+++.+-. ....-....+..++.-||.++.+|| .|.+++.
T Consensus 57 ~G~VlVvd~~g~~-----~~a~~G~~la~~a~~~G~~GiVidG~vRD~~~l~ 103 (162)
T 3c8o_A 57 KGKVLVVDGGGSL-----RRALLGDMLAEKAAKNGWEGIVVYGCIRDVDVIA 103 (162)
T ss_dssp BTEEEEEECTTCS-----SSBSCCHHHHHHHHHTTBCEEEEEEEECCHHHHT
T ss_pred CCCEEEEECCCCC-----CccchHHHHHHHHHHCCCeEEEecCCCCCHHHHh
Confidence 3356677754321 1111124567778888888888887 5766664
No 170
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=28.19 E-value=81 Score=21.25 Aligned_cols=31 Identities=13% Similarity=0.056 Sum_probs=17.5
Q ss_pred HHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh
Q psy786 131 VYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 131 ~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~ 163 (176)
|..--++..|++++.| ++.+++.+++++.++
T Consensus 12 Dtv~GFrLaGie~~~v--~~~ee~~~~~~~l~~ 42 (115)
T 3aon_B 12 DSVSPFRLFGFDVQHG--TTKTEIRKTIDEMAK 42 (115)
T ss_dssp HHHGGGGGGTCEEECC--CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEe--CCHHHHHHHHHHHHh
Confidence 3344455556666555 366666666666543
No 171
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=28.13 E-value=2.2e+02 Score=22.45 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=23.9
Q ss_pred HHHHHh-hhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecC
Q psy786 95 EALHFA-SYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDG 148 (176)
Q Consensus 95 eal~~a-~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG 148 (176)
.++..+ +..+++. ++++-.+ .+ ..-.+..+.+|.+++.+++
T Consensus 91 ~alA~aa~~~G~~~-~iv~p~~---~~---------~~k~~~~~~~GA~V~~~~~ 132 (343)
T 2pqm_A 91 IALCQAGAVFGYRV-NIAMPST---MS---------VERQMIMKAFGAELILTEG 132 (343)
T ss_dssp HHHHHHHHHHTCCE-EEEEETT---SC---------HHHHHHHHHTTCEEEEECG
T ss_pred HHHHHHHHHcCCCE-EEEECCC---CC---------HHHHHHHHHCCCEEEEECC
Confidence 345444 4688994 4444432 11 1224567888998888864
No 172
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=27.19 E-value=1.4e+02 Score=19.81 Aligned_cols=33 Identities=9% Similarity=0.085 Sum_probs=24.0
Q ss_pred HHHHHHHhhcCceEEEec---CCCHHHHHHHHHHHH
Q psy786 130 EVYRKRLDAFGFNAVVVD---GHDVEHLVKVSSFKL 162 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vd---G~d~~~l~~al~~a~ 162 (176)
.+..++++.+|++++.+. |.+.+++.+.+.+.+
T Consensus 132 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 132 QEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp HHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 456677888899988774 667778777776554
No 173
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=27.04 E-value=45 Score=24.93 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=32.1
Q ss_pred cHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEe
Q psy786 129 TEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQR 173 (176)
Q Consensus 129 ~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~ 173 (176)
.+...-.|+|||.+.+-..+..-+.+.+.++...++=.||..|+.
T Consensus 18 TTHV~LtARAfGA~~iil~~~~D~~v~esv~dV~~rWGG~F~ve~ 62 (201)
T 2yy8_A 18 TTHVALTARAFGADGIIIASEEDEKVKESVEDVVKRWGGPFFIEF 62 (201)
T ss_dssp HHHHHHHHHHTTCSEEEESSSCCHHHHHHHHHHHHHHCSCCBCCB
T ss_pred hhHHHHHHHHhcCCeEEEcCCcChhHHHHHHHHHHhcCCceEEEE
Confidence 456777899999999988766245677777777655566655543
No 174
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=26.86 E-value=1.5e+02 Score=20.05 Aligned_cols=34 Identities=3% Similarity=-0.016 Sum_probs=22.1
Q ss_pred cHHHHHHHhhcCceEEEecCCCH---HHHHHHHHHHH
Q psy786 129 TEVYRKRLDAFGFNAVVVDGHDV---EHLVKVSSFKL 162 (176)
Q Consensus 129 ~~~~~~~a~a~G~~~~~vdG~d~---~~l~~al~~a~ 162 (176)
..+..++++.++++++.+...+- +++...+.+.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 131 YEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167 (181)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 35667788899999998864444 44444444443
No 175
>3k4i_A Uncharacterized protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.69A {Pseudomonas syringae PV}
Probab=26.68 E-value=1.2e+02 Score=23.20 Aligned_cols=46 Identities=13% Similarity=0.230 Sum_probs=29.6
Q ss_pred CcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecC--CCHHHHHH
Q psy786 106 DNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDG--HDVEHLVK 156 (176)
Q Consensus 106 p~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG--~d~~~l~~ 156 (176)
|--++|+++.+..-. ..-....+..++.-||.++.+|| .|.+++.+
T Consensus 83 ~GdVlVvd~~g~~~~-----A~~G~lla~~a~~~G~aGvVidG~vRD~~ei~~ 130 (244)
T 3k4i_A 83 SGSVIVSSNSGRHDC-----TVWGDIMTHFALANGIKGTVIDGVARDIDTVIN 130 (244)
T ss_dssp TTEEEEEECTTCSSS-----BSCCHHHHHHHHHHTCCEEEEESBBSCHHHHHH
T ss_pred CCeEEEEECCCCCCe-----EehHHHHHHHHHHCCCeEEEeCCccCCHHHHHh
Confidence 336677776553111 11124567788888999999988 67777664
No 176
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=26.67 E-value=1.5e+02 Score=19.96 Aligned_cols=33 Identities=12% Similarity=0.077 Sum_probs=23.7
Q ss_pred HHHHHHHhhcCceEEEec---CCCHHHHHHHHHHHH
Q psy786 130 EVYRKRLDAFGFNAVVVD---GHDVEHLVKVSSFKL 162 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vd---G~d~~~l~~al~~a~ 162 (176)
.+..++++.++++++.+. |.+.+++.+.+.+.+
T Consensus 138 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 138 EDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp HHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456677888899988774 666777777766544
No 177
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A
Probab=26.54 E-value=82 Score=28.50 Aligned_cols=43 Identities=9% Similarity=-0.051 Sum_probs=32.7
Q ss_pred cceEEEEECCCccCCchH--------HHHHHHhhhcCCCcEEEEEecCCCcc
Q psy786 76 SYRTYCLVGDGESAEGSI--------WEALHFASYYKLDNLCVIFDINRLGQ 119 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~--------~eal~~a~~~~lp~liiV~~nn~~~~ 119 (176)
+++|+++.-|..++.|.. ..++..|.+.++| +|.++++.+-.+
T Consensus 104 G~~vvV~a~D~t~~gGS~G~~~~eKi~Ra~e~A~~~~lP-vI~l~dSGGARm 154 (758)
T 3k8x_A 104 GRQFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRGIP-RIYLAANSGARI 154 (758)
T ss_dssp CEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCC-EEEEECCCCBCC
T ss_pred CeEEEEEEECCccccccCcHHHHHHHHHHHHHHHHcCCC-EEEEecCCCcCc
Confidence 578999999998877643 3345678889999 667778777665
No 178
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=26.54 E-value=74 Score=24.05 Aligned_cols=31 Identities=10% Similarity=0.133 Sum_probs=26.6
Q ss_pred HHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh
Q psy786 131 VYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 131 ~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~ 163 (176)
-..++|+-+|++++.+. +.+.+..|+++|++
T Consensus 163 ~~~~~A~~~Gl~~vlI~--s~eSI~~Ai~eA~~ 193 (225)
T 2pju_A 163 LITDLAEEAGMTGIFIY--SAATVRQAFSDALD 193 (225)
T ss_dssp HHHHHHHHTTSEEEESS--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEC--CHHHHHHHHHHHHH
Confidence 45678999999999998 37999999999975
No 179
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=26.05 E-value=1.6e+02 Score=20.23 Aligned_cols=33 Identities=12% Similarity=0.076 Sum_probs=24.3
Q ss_pred HHHHHHHhhcCceEEEec---CCCHHHHHHHHHHHH
Q psy786 130 EVYRKRLDAFGFNAVVVD---GHDVEHLVKVSSFKL 162 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vd---G~d~~~l~~al~~a~ 162 (176)
.....+++.+|++++.+. |.+.+++.+.+.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 149 EKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp HHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455677888899988874 667788877776655
No 180
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=26.02 E-value=1.7e+02 Score=20.48 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=27.0
Q ss_pred cHHHHHHHhhcCc-eEEEe---cCCCHHHHHHHHHHHHh-hCCCcE
Q psy786 129 TEVYRKRLDAFGF-NAVVV---DGHDVEHLVKVSSFKLQ-KAIGCV 169 (176)
Q Consensus 129 ~~~~~~~a~a~G~-~~~~v---dG~d~~~l~~al~~a~~-~~~~P~ 169 (176)
..+..++++.+|+ +++.+ +|.+.+++.+.+.+.+. +.+.|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~~ 199 (201)
T 2hup_A 154 LAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPL 199 (201)
T ss_dssp HHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhccccc
Confidence 3456778888899 88876 46678888877766553 334454
No 181
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=25.85 E-value=2.4e+02 Score=22.10 Aligned_cols=78 Identities=12% Similarity=-0.097 Sum_probs=40.7
Q ss_pred HHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecC-----CCHHHHHHHHHHHHhhCCC
Q psy786 93 IWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDG-----HDVEHLVKVSSFKLQKAIG 167 (176)
Q Consensus 93 ~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG-----~d~~~l~~al~~a~~~~~~ 167 (176)
..+....+.++++|.++-++-.+. .+............-.+.+..+|.+++++.- .+++++.+.++..-...+.
T Consensus 144 i~~v~~~~~~~G~p~lv~~~~~g~-~v~~~~~~~~~v~~aa~~a~~lGaD~iKv~~~~~~~g~~~~~~~vv~~~~~~~~~ 222 (304)
T 1to3_A 144 VKEFNELCHSNGLLSIIEPVVRPP-RCGDKFDREQAIIDAAKELGDSGADLYKVEMPLYGKGARSDLLTASQRLNGHINM 222 (304)
T ss_dssp HHHHHHHHHTTTCEEEEEEEECCC-SSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGGGGCSCHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHcCCcEEEEEECCCC-ccccCCChhHHHHHHHHHHHHcCCCEEEeCCCcCCCCCHHHHHHHHHhccccCCC
Confidence 334445566789996655543222 2211000000112235566778999988753 2567777777653222567
Q ss_pred c-EEE
Q psy786 168 C-VWI 171 (176)
Q Consensus 168 P-~lI 171 (176)
| +++
T Consensus 223 P~Vv~ 227 (304)
T 1to3_A 223 PWVIL 227 (304)
T ss_dssp CEEEC
T ss_pred CeEEE
Confidence 8 554
No 182
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=25.72 E-value=1.5e+02 Score=19.76 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=23.0
Q ss_pred HHHHHHHhhcCceEEEec---CCCHHHHHHHHHHHH
Q psy786 130 EVYRKRLDAFGFNAVVVD---GHDVEHLVKVSSFKL 162 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vd---G~d~~~l~~al~~a~ 162 (176)
......++.++++++.+. |.+.+++.+.+.+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 140 EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp HHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 445667777899988774 566777777776543
No 183
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=25.49 E-value=2.4e+02 Score=25.91 Aligned_cols=97 Identities=7% Similarity=-0.146 Sum_probs=50.7
Q ss_pred HHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhh-hcCCCcEEEEEecCCC--ccccCcccccccHHHHHHH
Q psy786 60 SVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFAS-YYKLDNLCVIFDINRL--GQSEPTSLQHQTEVYRKRL 136 (176)
Q Consensus 60 ~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~-~~~lp~liiV~~nn~~--~~~~~~~~~~~~~~~~~~a 136 (176)
++|.|+|+.-. +-++++.+...=.++ ...+-++.+. ..+++ +.+...-... +-.+.+.. +..++. ++
T Consensus 580 g~a~GlA~~G~----~~~P~~~~ys~F~~q--Ra~Dqi~~~~d~~~~~-v~l~~~~~~~~~g~dG~tHq--~~~~~a-~l 649 (886)
T 2qtc_A 580 AAATSYSTNNL----PMIPFYIYYSMFGFQ--RIGDLCWAAGDQQARG-FLIGGTSGRTTLNGEGLQHE--DGHSHI-QS 649 (886)
T ss_dssp HHHTHHHHTSC----CCEEEEEEEGGGSHH--HHHHHHHHHHHTTCCC-EEEEESCSTTTSTTTCTTTC--CSCHHH-HH
T ss_pred HHHHHHHhcCC----CceEEEEEehHHHHH--HHHHHHHHHHHHhcCC-EEEEEecCcccCCCCCCccC--CcchHH-HH
Confidence 57777777531 125666655332222 2334444444 44555 4444433322 22222221 223444 44
Q ss_pred hhc-CceEEEecCCCHHHHHHHHHHHHhhCCCc
Q psy786 137 DAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGC 168 (176)
Q Consensus 137 ~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P 168 (176)
+.. |+.++. -.|..|+...++.|++..++|
T Consensus 650 r~iPnl~V~~--Pada~E~~~~l~~al~~~~gP 680 (886)
T 2qtc_A 650 LTIPNCISYD--PAYAYEVAVIMHDGLERMYGE 680 (886)
T ss_dssp TTSTTEEEEC--CSSHHHHHHHHHHHHHHHHST
T ss_pred hhCCCCEEEe--cCCHHHHHHHHHHHHHhcCCC
Confidence 444 665553 348999999999999655678
No 184
>4g6u_B EC869 CDII; beta-augmentation, DNAse, toxin, immunity; 2.35A {Escherichia coli O157}
Probab=25.26 E-value=48 Score=24.42 Aligned_cols=65 Identities=5% Similarity=-0.009 Sum_probs=32.1
Q ss_pred CCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEE
Q psy786 104 KLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVW 170 (176)
Q Consensus 104 ~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~l 170 (176)
+.-.+-|.++||...|.-..+.......-.++-.+. .=++.+| .+++||-+|++.|+.+.++..+
T Consensus 106 ~M~~csI~~~n~~I~I~Pt~h~~L~~w~g~~~~~~d-~Iilp~d-~s~eElGaAlr~AfsrC~~~~~ 170 (177)
T 4g6u_B 106 NMKKVGIHLVNDVITIRPSFHEKLEAWSGNRINESD-YVVLPAD-SSPTEIGSGLRLALSRCKGTSL 170 (177)
T ss_dssp TCEEEEEEEETTEEEEEECEEEETTEEECTTCCGGG-SEEEETT-CCHHHHHHHHHHHHTC------
T ss_pred cCceEEEEEECCEEEEEecccCCcccccccccCCCc-cEEEeCC-CCHHHHHHHHHHHHHHccCCcc
Confidence 444566777878777753322221111000000011 1144555 5899999999999987766554
No 185
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}
Probab=25.18 E-value=1.2e+02 Score=26.08 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=24.3
Q ss_pred cceEEEEECCCccCCch--------HHHHHHHhhhcCCCcEEEEEecCCCcc
Q psy786 76 SYRTYCLVGDGESAEGS--------IWEALHFASYYKLDNLCVIFDINRLGQ 119 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~--------~~eal~~a~~~~lp~liiV~~nn~~~~ 119 (176)
+++|.++.=|-.++.|. ....+.+|.++++| |++++|..++..
T Consensus 324 G~~V~via~d~~~~gG~l~~~~~~K~ar~i~~a~~~~~P-lv~l~ds~G~~~ 374 (522)
T 1x0u_A 324 GNVVGIVANNPEEFGGSIDIDAADKAARFIRFCDAFNIP-LISLVDTPGYVP 374 (522)
T ss_dssp TEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHTTCC-EEEEEEECCBCC
T ss_pred CEEEEEEEECCCccCCCcCHHHHHHHHHHHHHHhhCCCC-EEEEecCCCCCC
Confidence 35566666663332221 13345666778888 666677777544
No 186
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=25.03 E-value=1.3e+02 Score=23.42 Aligned_cols=45 Identities=16% Similarity=0.318 Sum_probs=34.1
Q ss_pred EEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHH
Q psy786 108 LCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKL 162 (176)
Q Consensus 108 liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~ 162 (176)
+.+|+||-+ .....+.+.++.+|+++...+.-+.+++.+.+++..
T Consensus 45 ~~LIinn~~----------~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~ 89 (272)
T 3h11_A 45 ICLIIDCIG----------NETELLRDTFTSLGYEVQKFLHLSMHGISQILGQFA 89 (272)
T ss_dssp EEEEEESSC----------CCCSHHHHHHHHHTEEEEEEESCBHHHHHHHHHHHH
T ss_pred EEEEECCch----------HHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHH
Confidence 667777643 123568899999999988775467899999998864
No 187
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=24.73 E-value=1.8e+02 Score=20.13 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=24.8
Q ss_pred cHHHHHHHhhcCceEEEec---CCCHHHHHHHHHHHH
Q psy786 129 TEVYRKRLDAFGFNAVVVD---GHDVEHLVKVSSFKL 162 (176)
Q Consensus 129 ~~~~~~~a~a~G~~~~~vd---G~d~~~l~~al~~a~ 162 (176)
..+..++++.+|++++.+. |.+.+++.+.+.+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 148 LKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp HHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 3566778888999988874 567777777776654
No 188
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=24.69 E-value=2.6e+02 Score=22.05 Aligned_cols=70 Identities=11% Similarity=-0.008 Sum_probs=37.9
Q ss_pred CcceEEEEECCCccCCchHHHHHHHhhhc-CCCc-EEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecC--CC
Q psy786 75 ASYRTYCLVGDGESAEGSIWEALHFASYY-KLDN-LCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDG--HD 150 (176)
Q Consensus 75 ~~~~vv~~~GDG~~~~G~~~eal~~a~~~-~lp~-liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG--~d 150 (176)
+.+.+|.+.|.|+ ..++|..+.+. .+|. +..|+-|+. +..++|+.+|++++.++- .+
T Consensus 105 ~~ri~vl~Sg~g~-----nl~~ll~~~~~g~l~~~I~~Visn~~--------------~~~~~A~~~gIp~~~~~~~~~~ 165 (302)
T 3o1l_A 105 KKRVVLMASRESH-----CLADLLHRWHSDELDCDIACVISNHQ--------------DLRSMVEWHDIPYYHVPVDPKD 165 (302)
T ss_dssp CCEEEEEECSCCH-----HHHHHHHHHHTTCSCSEEEEEEESSS--------------TTHHHHHTTTCCEEECCCCSSC
T ss_pred CcEEEEEEeCCch-----hHHHHHHHHHCCCCCcEEEEEEECcH--------------HHHHHHHHcCCCEEEcCCCcCC
Confidence 3455666777765 34556655543 3542 334444332 124578999999998731 12
Q ss_pred HHHHHHHHHHHHh
Q psy786 151 VEHLVKVSSFKLQ 163 (176)
Q Consensus 151 ~~~l~~al~~a~~ 163 (176)
.++..+.+.+.++
T Consensus 166 r~~~~~~~~~~l~ 178 (302)
T 3o1l_A 166 KEPAFAEVSRLVG 178 (302)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 2344444444443
No 189
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=24.44 E-value=1.7e+02 Score=19.73 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=24.6
Q ss_pred cHHHHHHHhhcCceEEEec---CCCHHHHHHHHHHHH
Q psy786 129 TEVYRKRLDAFGFNAVVVD---GHDVEHLVKVSSFKL 162 (176)
Q Consensus 129 ~~~~~~~a~a~G~~~~~vd---G~d~~~l~~al~~a~ 162 (176)
..+..++++.++++++.+. |.+.+++.+.+.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 143 VEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp HHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 3456677888999988774 667777777776554
No 190
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=24.30 E-value=2.1e+02 Score=23.06 Aligned_cols=57 Identities=14% Similarity=-0.007 Sum_probs=29.7
Q ss_pred CCccccCCcccchhHHHHHHHHHhch-hcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCC
Q psy786 45 LNFIDVGTGSLGQGLSVAAGMAYVGK-YFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLD 106 (176)
Q Consensus 45 ~~~~~~~~g~~G~~l~~AvG~A~a~~-~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp 106 (176)
+|.++...+ +.....|+-=.+..+ ..+.-++..|+++||+ -. ....-+..+.+++..
T Consensus 148 vPVINag~~--~~HPtQaLaDl~TI~E~~G~l~glkva~vGD~-~n--va~Sl~~~~~~~G~~ 205 (340)
T 4ep1_A 148 IPVINGLTD--DHHPCQALADLMTIYEETNTFKGIKLAYVGDG-NN--VCHSLLLASAKVGMH 205 (340)
T ss_dssp SCEEEEECS--SCCHHHHHHHHHHHHHHHSCCTTCEEEEESCC-CH--HHHHHHHHHHHHTCE
T ss_pred CCEEeCCCC--CCCcHHHHHHHHHHHHHhCCCCCCEEEEECCC-ch--hHHHHHHHHHHcCCE
Confidence 455554332 455555554332221 1133457899999998 22 344444555566654
No 191
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=24.27 E-value=1.8e+02 Score=20.41 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=22.5
Q ss_pred HHHHHhhc-----CceEEE--ecCCCHHHHHHHHHHHHh
Q psy786 132 YRKRLDAF-----GFNAVV--VDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 132 ~~~~a~a~-----G~~~~~--vdG~d~~~l~~al~~a~~ 163 (176)
+.++.+.. |++... +-.+|.+++.++++++++
T Consensus 30 l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~ 68 (167)
T 1uuy_A 30 AVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSD 68 (167)
T ss_dssp HHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHh
Confidence 45566656 876552 324599999999999874
No 192
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=23.89 E-value=1.7e+02 Score=19.63 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=24.7
Q ss_pred HHHHHHHhhcCceEEEe---cCCCHHHHHHHHHHHHh
Q psy786 130 EVYRKRLDAFGFNAVVV---DGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~v---dG~d~~~l~~al~~a~~ 163 (176)
.+..++++.+|++++.+ +|.+.+++.+.+.+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 137 EDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp HHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 45566777788988876 46678888887776653
No 193
>2pcn_A S-adenosylmethionine:2-demethylmenaquinone methyltransferase; beta, beta alpha domain; 1.90A {Geobacillus kaustophilus}
Probab=23.83 E-value=86 Score=22.41 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=18.4
Q ss_pred HHHHHHHhhcCceEEEecC--CCHHHHH
Q psy786 130 EVYRKRLDAFGFNAVVVDG--HDVEHLV 155 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vdG--~d~~~l~ 155 (176)
...+..++..||.++.+|| .|.+++.
T Consensus 74 ~~la~~a~~~G~~GiVidG~vRD~~~i~ 101 (161)
T 2pcn_A 74 DRLAQIACERGLAGVIIHGCIRDSAEIG 101 (161)
T ss_dssp HHHHHHHHHTTCCEEEEEEEESCHHHHT
T ss_pred HHHHHHHHHcCCcEEEecccccCHHHHh
Confidence 4566777788888888877 5666654
No 194
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=23.80 E-value=2.2e+02 Score=23.14 Aligned_cols=58 Identities=14% Similarity=0.001 Sum_probs=30.1
Q ss_pred CCccccCCcccchhHHHHHHHHHhchh-cCCCcceEEEEECCCccCCchHHHHHHHhhhcCCC
Q psy786 45 LNFIDVGTGSLGQGLSVAAGMAYVGKY-FDKASYRTYCLVGDGESAEGSIWEALHFASYYKLD 106 (176)
Q Consensus 45 ~~~~~~~~g~~G~~l~~AvG~A~a~~~-~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp 106 (176)
+|.++.. .-++..-.++-=.+..+. .+.-++..|+++||+-. .....-+..++.++..
T Consensus 145 vPVINa~--~~~~HPtQaLaDl~Ti~E~~g~l~gl~va~vGD~~~--rva~Sl~~~~~~lG~~ 203 (359)
T 2w37_A 145 VPVWNGL--TDEWHPTQMLADFMTVKENFGKLQGLTLTFMGDGRN--NVANSLLVTGAILGVN 203 (359)
T ss_dssp SCEEEEE--CSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCTTS--HHHHHHHHHHHHHTCE
T ss_pred CCEEcCC--CCCCCccHHHHHHHHHHHHhCCcCCeEEEEECCCcc--chHHHHHHHHHHcCCE
Confidence 4445432 245555555543333221 13335689999999822 2344445555566665
No 195
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B
Probab=23.73 E-value=94 Score=26.98 Aligned_cols=43 Identities=14% Similarity=0.073 Sum_probs=31.4
Q ss_pred cceEEEEECCCccCCchH--------HHHHHHhhhcCCCcEEEEEecCCCcc
Q psy786 76 SYRTYCLVGDGESAEGSI--------WEALHFASYYKLDNLCVIFDINRLGQ 119 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~--------~eal~~a~~~~lp~liiV~~nn~~~~ 119 (176)
+++|+++.-|..++.|.. ..++..|.+.++| +|.++++.+-.+
T Consensus 120 Gr~v~V~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~~lP-vI~l~dSgGARl 170 (555)
T 3u9r_B 120 GVECMIVGNDATVKGGTYYPLTVKKHLRAQAIALENRLP-CIYLVDSGGANL 170 (555)
T ss_dssp TEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCC-EEEEECCCCBCG
T ss_pred CEEEEEEEECCccccCCCCHHHHHHHHHHHHHHHHcCCC-EEEEECCCCCCC
Confidence 578999999988876643 2355688889999 666677776554
No 196
>1vi4_A Regulator of ribonuclease acivity A protein 1; structural genomics, unknown function; 1.87A {Vibrio cholerae} SCOP: c.8.7.1
Probab=23.67 E-value=87 Score=22.75 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=17.1
Q ss_pred HHHHHHHhhcCceEEEecC--CCHHHHH
Q psy786 130 EVYRKRLDAFGFNAVVVDG--HDVEHLV 155 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vdG--~d~~~l~ 155 (176)
...+..++..||.++.+|| .|.+++.
T Consensus 79 ~~la~~a~~~G~aGiVidG~vRD~~~l~ 106 (174)
T 1vi4_A 79 DQLAILAIKNDWEGVIIYGAVRDVVAMS 106 (174)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECCHHHHT
T ss_pred HHHHHHHHHCCCeEEEeccccCCHHHHH
Confidence 4456677777888877776 4655554
No 197
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4
Probab=23.45 E-value=70 Score=27.99 Aligned_cols=43 Identities=12% Similarity=0.127 Sum_probs=31.4
Q ss_pred cceEEEEECCCccCCchH--------HHHHHHhhhcCCCcEEEEEecCCCcc
Q psy786 76 SYRTYCLVGDGESAEGSI--------WEALHFASYYKLDNLCVIFDINRLGQ 119 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~--------~eal~~a~~~~lp~liiV~~nn~~~~ 119 (176)
+++|+++.-|..++.|.. ..++..|.+.++| +|.+++..+-.+
T Consensus 104 Gr~v~v~a~D~t~~gGs~g~~~~~Ki~r~~e~A~~~~lP-vI~l~dSgGArl 154 (587)
T 1pix_A 104 GKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTLHVP-LVYVLNCSGVKF 154 (587)
T ss_dssp TEEEEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHTCC-EEEEECCCEECG
T ss_pred CEEEEEEEECCccccCCCCHHHHHHHHHHHHHHHHcCCC-EEEEEeCCCCCc
Confidence 568999999977765543 4456788899999 666677666554
No 198
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=23.41 E-value=2e+02 Score=20.88 Aligned_cols=34 Identities=6% Similarity=-0.004 Sum_probs=24.2
Q ss_pred HHHHHHHhh---cCceEEE--ecCCCHHHHHHHHHHHHh
Q psy786 130 EVYRKRLDA---FGFNAVV--VDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 130 ~~~~~~a~a---~G~~~~~--vdG~d~~~l~~al~~a~~ 163 (176)
.-+.+..+. +|++... +-.+|++++.++++++++
T Consensus 37 ~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~ 75 (189)
T 1jlj_A 37 INLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCD 75 (189)
T ss_dssp HHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhh
Confidence 345666666 7877652 334599999999999975
No 199
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=23.38 E-value=1.9e+02 Score=22.11 Aligned_cols=28 Identities=18% Similarity=0.055 Sum_probs=16.8
Q ss_pred eEEEEECCCccCCchHHHHHHHhhhcCCCc
Q psy786 78 RTYCLVGDGESAEGSIWEALHFASYYKLDN 107 (176)
Q Consensus 78 ~vv~~~GDG~~~~G~~~eal~~a~~~~lp~ 107 (176)
.|..++|-.+.. ........+.++++|+
T Consensus 72 ~v~~iig~~~s~--~~~~~~~~~~~~~iP~ 99 (358)
T 3hut_A 72 RVVGVLGDFSST--VSMAAGSIYGKEGMPQ 99 (358)
T ss_dssp TEEEEEECSSHH--HHHHHHHHHHHHTCCE
T ss_pred CcEEEEcCCCcH--HHHHHHHHHHHCCCcE
Confidence 577777654432 2334456667889994
No 200
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=23.21 E-value=2.3e+02 Score=23.28 Aligned_cols=40 Identities=15% Similarity=-0.078 Sum_probs=24.6
Q ss_pred HHHHHhhcCceEEEecC-----CCHHHHHHHHHHHHhhCCCcEEE
Q psy786 132 YRKRLDAFGFNAVVVDG-----HDVEHLVKVSSFKLQKAIGCVWI 171 (176)
Q Consensus 132 ~~~~a~a~G~~~~~vdG-----~d~~~l~~al~~a~~~~~~P~lI 171 (176)
+.+.++-.|.+.+.|.. -|+++|++++++..+....|.+|
T Consensus 201 ~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~v 245 (481)
T 4e1o_A 201 VEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFV 245 (481)
T ss_dssp HHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEE
Confidence 34444556788777752 28899999987754322336544
No 201
>3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding protein, glycosidase, Lys enzyme, (beta/alpha)8 barrel, disease mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A {Homo sapiens} PDB: 3tv8_A* 3lx9_A* 3lxa_A* 3lxb_A* 3lxc_A* 3s5z_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A* 3hg4_A* 3hg5_A* 3gxp_A* 3s5y_A*
Probab=23.16 E-value=1.2e+02 Score=25.18 Aligned_cols=40 Identities=13% Similarity=0.158 Sum_probs=30.2
Q ss_pred HHHHhhcCceEEEecCCC------HHHHHHHHHHHHhhCCCcEEEE
Q psy786 133 RKRLDAFGFNAVVVDGHD------VEHLVKVSSFKLQKAIGCVWIQ 172 (176)
Q Consensus 133 ~~~a~a~G~~~~~vdG~d------~~~l~~al~~a~~~~~~P~lI~ 172 (176)
++.+...|++++++|+.. ..+-+.++++|+.+..+|.+..
T Consensus 125 a~~fa~WGvDylK~D~C~~~~~~~~~~~y~~m~~AL~~tGRpi~~s 170 (404)
T 3hg3_A 125 AQTFADWGVDLLKFAGCYCDSLENLADGYKHMSLALNRTGRSIVYS 170 (404)
T ss_dssp HHHHHHHTCCEEEEECCSCSCHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHhCCcEEEecCcCCCcchhHHHHHHHHHHHHHhcCCCEEEE
Confidence 445667899999998531 3456778899998888998775
No 202
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=23.12 E-value=1.9e+02 Score=19.84 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=24.2
Q ss_pred HHHHHHHhhcCceEEEec---CCCHHHHHHHHHHHH
Q psy786 130 EVYRKRLDAFGFNAVVVD---GHDVEHLVKVSSFKL 162 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vd---G~d~~~l~~al~~a~ 162 (176)
.+..++++.+|++++.+. |.+.+++.+.+.+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 148 EDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp HHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456677888899988774 667788877776654
No 203
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=22.86 E-value=1.1e+02 Score=22.14 Aligned_cols=32 Identities=3% Similarity=-0.185 Sum_probs=16.1
Q ss_pred EEEEECCCccCCchHHHHHHHhhhcCCCcEEE
Q psy786 79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCV 110 (176)
Q Consensus 79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~lii 110 (176)
++.+.+|+....+...++...++..++.+.++
T Consensus 110 iil~~~~~~~~~~~~~~~a~~lk~~gi~v~~I 141 (192)
T 2x5n_A 110 VAFVGSPIVEDEKNLIRLAKRMKKNNVAIDII 141 (192)
T ss_dssp EEEECSCCSSCHHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEEECCCCCCchhHHHHHHHHHHCCCEEEEE
Confidence 44555555333333445555566677664333
No 204
>1q5x_A Regulator of RNAse E activity A; 3-layer sandwich, alpha-beta structure, parallel beta sheet, antiparallel beta sheet, hydrolase inhibitor; 2.00A {Escherichia coli} SCOP: c.8.7.1
Probab=22.80 E-value=94 Score=22.13 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=18.6
Q ss_pred HHHHHHHhhcCceEEEecC--CCHHHHH
Q psy786 130 EVYRKRLDAFGFNAVVVDG--HDVEHLV 155 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vdG--~d~~~l~ 155 (176)
...+..++..||.++.+|| .|.+++.
T Consensus 76 ~~la~~a~~~G~~G~VidG~vRD~~~i~ 103 (161)
T 1q5x_A 76 AELARLAVQNEWEGLVIYGAVRQVDDLE 103 (161)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECCHHHHT
T ss_pred HHHHHHHHHCCCeEEEecCccCCHHHHh
Confidence 4566777888888888876 5666654
No 205
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=22.77 E-value=1.7e+02 Score=19.38 Aligned_cols=11 Identities=36% Similarity=0.416 Sum_probs=6.4
Q ss_pred EEEEECCCccC
Q psy786 79 TYCLVGDGESA 89 (176)
Q Consensus 79 vv~~~GDG~~~ 89 (176)
-++++|-|.+.
T Consensus 9 ~viIiG~G~~G 19 (140)
T 3fwz_A 9 HALLVGYGRVG 19 (140)
T ss_dssp CEEEECCSHHH
T ss_pred CEEEECcCHHH
Confidence 45566666654
No 206
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=22.71 E-value=1.8e+02 Score=19.62 Aligned_cols=33 Identities=12% Similarity=0.027 Sum_probs=23.8
Q ss_pred HHHHHHHhhcCceEEEec---CCCHHHHHHHHHHHH
Q psy786 130 EVYRKRLDAFGFNAVVVD---GHDVEHLVKVSSFKL 162 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vd---G~d~~~l~~al~~a~ 162 (176)
.+..++++..+++++.+. |.+.+++.+.+.+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 136 LEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp HHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 456677888899998774 667777777765554
No 207
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=22.55 E-value=49 Score=26.18 Aligned_cols=88 Identities=9% Similarity=-0.007 Sum_probs=43.1
Q ss_pred ceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc---ccc-----cHHHHHHHhhcCceEEEe--
Q psy786 77 YRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---QHQ-----TEVYRKRLDAFGFNAVVV-- 146 (176)
Q Consensus 77 ~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---~~~-----~~~~~~~a~a~G~~~~~v-- 146 (176)
..|.+++|..+.. ........+.++++|.+..-..+..+ +..... ..+ ..-+.++++.+||+.+-+
T Consensus 70 ~~V~aiiG~~~S~--~~~a~~~~~~~~~ip~is~~~~~~~l--~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~ 145 (395)
T 3h6g_A 70 LGVAAIFGPSHSS--SANAVQSICNALGVPHIQTRWKHQVS--DNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY 145 (395)
T ss_dssp HCCSCEECCSSHH--HHHHHHHHHHHTTCCEEECSCCCCCT--TCCCCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred cCcEEEECCCChh--HHHHHHHHHhcCCCCeEeeccCcccc--cccCceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 3588889877665 23344567778999944322221111 111100 001 123456778889886633
Q ss_pred cCCCHHHHHHHHHHHHhhCCCc
Q psy786 147 DGHDVEHLVKVSSFKLQKAIGC 168 (176)
Q Consensus 147 dG~d~~~l~~al~~a~~~~~~P 168 (176)
|...-....+.+++++++....
T Consensus 146 d~~~g~~~~~~~~~~~~~~g~~ 167 (395)
T 3h6g_A 146 DDSTGLIRLQELIKAPSRYNLR 167 (395)
T ss_dssp SSTHHHHHTHHHHTGGGTSSCE
T ss_pred EChhHHHHHHHHHHhhhcCCce
Confidence 4211233445555554333333
No 208
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=22.48 E-value=1.7e+02 Score=19.25 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=24.8
Q ss_pred HHHHHHHhhcCceEEEe---cCCCHHHHHHHHHHHHh
Q psy786 130 EVYRKRLDAFGFNAVVV---DGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~v---dG~d~~~l~~al~~a~~ 163 (176)
.....+++.++++++.+ +|.+.+++.+.+.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 127 DEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIR 163 (166)
T ss_dssp HHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHH
Confidence 34566778889998877 46778888887776653
No 209
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=22.47 E-value=1.6e+02 Score=20.96 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=22.9
Q ss_pred eEEEEECCCc-cCCchHHHHHHHhhhcCCCcEEEEEec
Q psy786 78 RTYCLVGDGE-SAEGSIWEALHFASYYKLDNLCVIFDI 114 (176)
Q Consensus 78 ~vv~~~GDG~-~~~G~~~eal~~a~~~~lp~liiV~~n 114 (176)
.||++. ||. ...|..+| +-.|...+.|+ +.+..+
T Consensus 72 ~viA~l-dg~~~D~Gt~~E-iG~A~a~gkPV-i~~~~D 106 (162)
T 3ehd_A 72 LLVALL-DGPTIDAGVASE-IGVAYAKGIPV-VALYTD 106 (162)
T ss_dssp EEEEEC-CSSSCCHHHHHH-HHHHHHTTCCE-EEECCC
T ss_pred EEEEEC-CCCCCCCCHHHH-HHHHHHCCCEE-EEEEcC
Confidence 455555 664 56777776 99999999994 444443
No 210
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=21.92 E-value=1.3e+02 Score=19.66 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=22.5
Q ss_pred HHHHHHHhhcCceEEE-ecCCCHHHHHHHHHHHHh
Q psy786 130 EVYRKRLDAFGFNAVV-VDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~-vdG~d~~~l~~al~~a~~ 163 (176)
.|..--++..|+..+. + ++.+++.+++++.++
T Consensus 18 ~Dtv~GFrLaGi~~~~~~--~~~ee~~~~~~~l~~ 50 (102)
T 2i4r_A 18 PDFTIGFMLAGISDIYEV--TSDEEIVKAVEDVLK 50 (102)
T ss_dssp HHHHHHHHHTTCCCEEEC--CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCC--CCHHHHHHHHHHHhh
Confidence 4555556777877776 5 378888888888764
No 211
>2z1d_A Hydrogenase expression/formation protein HYPD; [NIFE] hydrogenase maturation, [4Fe-4S] cluster, thiol redox binding protein; HET: CSW; 2.07A {Thermococcus kodakarensis}
Probab=21.77 E-value=3.3e+02 Score=22.32 Aligned_cols=97 Identities=10% Similarity=0.021 Sum_probs=57.1
Q ss_pred HHHHHHHHHhchhcCCCcceEEEEECCCccC--CchHHHHHHHhhhcCCCcEEEEEecCCC------------cccc---
Q psy786 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESA--EGSIWEALHFASYYKLDNLCVIFDINRL------------GQSE--- 121 (176)
Q Consensus 59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~--~G~~~eal~~a~~~~lp~liiV~~nn~~------------~~~~--- 121 (176)
.-=|+=+|..++ ++.||.+. = +|. .-....++..|.+.++.|+.++++.--. .+++
T Consensus 127 plDAl~iA~~nP-----~k~VVFfa-i-GFETTaP~tA~~i~~a~~~~l~Nfsvl~~h~l~pPa~~all~~~~~idgfi~ 199 (372)
T 2z1d_A 127 IFDTYRIAKENP-----DKTVVHFS-P-GFETTTAPAAGMLNVAAQEELENFKIYSVHRLTPPAVEVLLKQGTVFQGLIA 199 (372)
T ss_dssp HHHHHHHHHHCT-----TSEEEEEE-E-ECHHHHHHHHHHHHHHHHHTCSSEEEEEEEECHHHHHHHHHHTSCCCSEEEE
T ss_pred HHHHHHHHHHCC-----CCeEEEEe-e-ChhhccHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHcCCCcCcEEEe
Confidence 334555555443 55555543 1 232 2233445667778899998777663321 1110
Q ss_pred --CcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh
Q psy786 122 --PTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 122 --~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~ 163 (176)
+.....+...|..+++-|+.+.+. .|..+.++-.++...++
T Consensus 200 PGHVstIiG~~~y~~l~~~y~~P~VV-aGFEP~DiL~ai~~lv~ 242 (372)
T 2z1d_A 200 PGHVSTIIGVKGWEYLTEKYGIPQVV-AGFEPNDVLMAILMLIR 242 (372)
T ss_dssp EHHHHHHHTTHHHHHHHHHHCCCEEE-ECSSHHHHHHHHHHHHH
T ss_pred cCeeeEEeccchhHHHHHHcCCCEEE-cCCCHHHHHHHHHHHHH
Confidence 001112345788899999999774 68899988888877665
No 212
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=21.73 E-value=2.9e+02 Score=21.64 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=24.7
Q ss_pred HHHHHHHhh-hcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecC
Q psy786 93 IWEALHFAS-YYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDG 148 (176)
Q Consensus 93 ~~eal~~a~-~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG 148 (176)
...++..++ ..+++.+ +++-.+. ...-.+..+.+|.+++.+++
T Consensus 83 ~g~alA~aa~~~G~~~~-iv~p~~~------------~~~k~~~~~~~GA~V~~~~~ 126 (334)
T 3tbh_A 83 TGVSLAHLGAIRGYKVI-ITMPESM------------SLERRCLLRIFGAEVILTPA 126 (334)
T ss_dssp HHHHHHHHHHHHTCEEE-EEEETTS------------CHHHHHHHHHTTCEEEEECG
T ss_pred HHHHHHHHHHHhCCCEE-EEECCCC------------CHHHHHHHHHCCCEEEEECC
Confidence 334555444 6789854 4443221 11224567889999988864
No 213
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=21.68 E-value=2e+02 Score=19.76 Aligned_cols=32 Identities=22% Similarity=0.079 Sum_probs=20.7
Q ss_pred HHHHHHHhhcCceEEEecC-CCHHHHHHHHHHH
Q psy786 130 EVYRKRLDAFGFNAVVVDG-HDVEHLVKVSSFK 161 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vdG-~d~~~l~~al~~a 161 (176)
.+..++++.+|++++.+.. .+-+.+.+.++..
T Consensus 148 ~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l 180 (187)
T 3c5c_A 148 AEGVALAGRFGCLFFEVSACLDFEHVQHVFHEA 180 (187)
T ss_dssp HHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEEeecCccccHHHHHHHH
Confidence 4566788888999988865 4444444444443
No 214
>1nxj_A Probable S-adenosylmethionine:2- demethylmenaquinone methyltransferase; beta/BETA/alpha domain, structural genomics, PSI; HET: TLA; 1.90A {Mycobacterium tuberculosis} SCOP: c.8.7.1
Probab=21.61 E-value=84 Score=23.05 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=19.9
Q ss_pred HHHHHHHhhcCceEEEecC--CCHHHHH
Q psy786 130 EVYRKRLDAFGFNAVVVDG--HDVEHLV 155 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vdG--~d~~~l~ 155 (176)
...+..++.-||.++.+|| .|.+++.
T Consensus 105 ~~la~~a~~~G~aGiVidG~vRD~~ei~ 132 (183)
T 1nxj_A 105 DVIAELARSTGWTGLIVHGAVRDAAALR 132 (183)
T ss_dssp HHHHHHHHHHTCCEEEEEEEESCHHHHT
T ss_pred HHHHHHHHHCCCcEEEeccccCCHHHHh
Confidence 4567788888999998887 5776665
No 215
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=21.56 E-value=2.6e+02 Score=22.32 Aligned_cols=29 Identities=17% Similarity=0.118 Sum_probs=17.7
Q ss_pred CcceEEEEECCCccCCchHHHHHHHhhhcCCC
Q psy786 75 ASYRTYCLVGDGESAEGSIWEALHFASYYKLD 106 (176)
Q Consensus 75 ~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp 106 (176)
-++..|+++||+ -. ....-+..+.+.+..
T Consensus 155 l~glkva~vGD~-~r--va~Sl~~~~~~~G~~ 183 (323)
T 3gd5_A 155 LAGLKLAYVGDG-NN--VAHSLLLGCAKVGMS 183 (323)
T ss_dssp CTTCEEEEESCC-CH--HHHHHHHHHHHHTCE
T ss_pred CCCCEEEEECCC-Cc--HHHHHHHHHHHcCCE
Confidence 357899999999 22 333334444566654
No 216
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=21.43 E-value=2e+02 Score=19.60 Aligned_cols=73 Identities=8% Similarity=-0.028 Sum_probs=38.9
Q ss_pred cceEEEEECCCccCCchH---HHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHH
Q psy786 76 SYRTYCLVGDGESAEGSI---WEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVE 152 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~---~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~ 152 (176)
.++++.++.||.-..+.. .+....+...++. ++.+--.. .....+.+++..-|. .+.+. .+.+
T Consensus 103 ~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~i~--i~~igvg~----------~~~~~L~~ia~~~~~-~~~~~-~~~~ 168 (182)
T 1shu_X 103 TSSIIIALTDGKLDGLVPSYAEKEAKISRSLGAS--VYCVGVLD----------FEQAQLERIADSKEQ-VFPVK-GGFQ 168 (182)
T ss_dssp SCEEEEEEECCCCCTTHHHHHHHHHHHHHHTTCE--EEEEECSS----------CCHHHHHHHSSSGGG-EEESS-STTH
T ss_pred CCeEEEEECCCCcCCCCchhHHHHHHHHHhCCCE--EEEEeCCc----------CCHHHHHHHhCCCCc-eEEcc-CCHH
Confidence 457899999998764331 2233344455555 22221110 112345666665444 34443 3677
Q ss_pred HHHHHHHHHH
Q psy786 153 HLVKVSSFKL 162 (176)
Q Consensus 153 ~l~~al~~a~ 162 (176)
+|.+++++..
T Consensus 169 ~L~~~~~~i~ 178 (182)
T 1shu_X 169 ALKGIINSIL 178 (182)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777654
No 217
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=21.26 E-value=2e+02 Score=22.86 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=29.9
Q ss_pred CCCccccCCcccchhHHHHHHHHHhch-hcCCCcceEEEEECCCccCCchHHHHHHHhhhc-CCC
Q psy786 44 RLNFIDVGTGSLGQGLSVAAGMAYVGK-YFDKASYRTYCLVGDGESAEGSIWEALHFASYY-KLD 106 (176)
Q Consensus 44 ~~~~~~~~~g~~G~~l~~AvG~A~a~~-~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~-~lp 106 (176)
..|.++...|. +.+.-.++-=.+..+ ..+.-++..|+++||+.-.- ....-+..+.++ +..
T Consensus 121 ~vPVINag~G~-~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~~~~r-va~Sl~~~~~~~~g~~ 183 (310)
T 3csu_A 121 NVPVLNAGDGS-NQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGR-TVHSLTQALAKFDGNR 183 (310)
T ss_dssp TCCEEEEEETT-SCCHHHHHHHHHHHHHHHSCSSSCEEEEESCTTTCH-HHHHHHHHHHTSSSCE
T ss_pred CCCEEcCccCC-CCCchHHHHHHHHHHHHhCCcCCcEEEEECCCCCCc-hHHHHHHHHHhCCCCE
Confidence 34555543332 344444443333221 11333568999999986421 233334444566 654
No 218
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=21.18 E-value=2e+02 Score=19.42 Aligned_cols=33 Identities=15% Similarity=0.077 Sum_probs=22.9
Q ss_pred HHHHHHHhhcCceEEEe---cCCCHHHHHHHHHHHH
Q psy786 130 EVYRKRLDAFGFNAVVV---DGHDVEHLVKVSSFKL 162 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~v---dG~d~~~l~~al~~a~ 162 (176)
.+..++++.+|++++.+ +|.+.+++...+.+.+
T Consensus 134 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 134 ERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp HHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45667788889998876 4667888777776554
No 219
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=21.05 E-value=1.8e+02 Score=18.96 Aligned_cols=31 Identities=6% Similarity=-0.007 Sum_probs=20.0
Q ss_pred HHHHHHHhhcCceEEEecCCCHHHHHHHHHH
Q psy786 130 EVYRKRLDAFGFNAVVVDGHDVEHLVKVSSF 160 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~ 160 (176)
.+..++++.+|++++.+...+-+.+.+.++.
T Consensus 129 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 159 (167)
T 1kao_A 129 SEGRALAEEWGCPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp HHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence 4556677788999998865555444444433
No 220
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=21.04 E-value=2.3e+02 Score=20.07 Aligned_cols=74 Identities=12% Similarity=-0.019 Sum_probs=40.4
Q ss_pred cceEEEEECCCccCCc---hHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh-cCceEEEecCCCH
Q psy786 76 SYRTYCLVGDGESAEG---SIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA-FGFNAVVVDGHDV 151 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G---~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a-~G~~~~~vdG~d~ 151 (176)
.++++.++-||.-..+ ...++...+...++.+..|=+- +. .....+..+|.. -+-+++.++ |+
T Consensus 115 ~~~~iillTDG~~~~~~~~~~~~~a~~l~~~gi~i~~igvG-~~----------~~~~~L~~iA~~~~~~~~~~~~--~~ 181 (202)
T 1ijb_A 115 ASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIG-PH----------ANLKQIRLIEKQAPENKAFVLS--SV 181 (202)
T ss_dssp SEEEEEEEECCCCCGGGCTTHHHHHHHHHHTTEEEEEEEES-TT----------SCHHHHHHHHHHCTTCCCEEES--SG
T ss_pred CCeEEEEEccCCCCccchHHHHHHHHHHHHCCCEEEEEecC-Cc----------CCHHHHHHHhCCCCcccEEEeC--CH
Confidence 3578888889987643 2344445555556553222221 11 112345666653 355677775 66
Q ss_pred HHHHHHHHHHH
Q psy786 152 EHLVKVSSFKL 162 (176)
Q Consensus 152 ~~l~~al~~a~ 162 (176)
++|.+.+++-.
T Consensus 182 ~~L~~~~~~i~ 192 (202)
T 1ijb_A 182 DELEQQRDEIV 192 (202)
T ss_dssp GGHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67766665543
No 221
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=20.69 E-value=2.3e+02 Score=19.91 Aligned_cols=34 Identities=6% Similarity=0.028 Sum_probs=25.5
Q ss_pred HHHHHHHhhcCceEEEec---CCCHHHHHHHHHHHHh
Q psy786 130 EVYRKRLDAFGFNAVVVD---GHDVEHLVKVSSFKLQ 163 (176)
Q Consensus 130 ~~~~~~a~a~G~~~~~vd---G~d~~~l~~al~~a~~ 163 (176)
......++..+++++.+. |.+.+++...+.+.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 174 (218)
T 4djt_A 138 KLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFT 174 (218)
T ss_dssp HHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHh
Confidence 445567788899999874 6678888888877764
No 222
>3noj_A 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloac decarboxylase; class II aldolase, A-B-B-A sandwich, metalloprotein, lyase; HET: PG4; 1.82A {Pseudomonas putida}
Probab=20.63 E-value=1.7e+02 Score=22.26 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=29.0
Q ss_pred cEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecC--CCHHHHHH
Q psy786 107 NLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDG--HDVEHLVK 156 (176)
Q Consensus 107 ~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG--~d~~~l~~ 156 (176)
--++|+++.+-.- ...-....+..++..||.++.+|| .|.+++.+
T Consensus 84 G~VlVvd~~g~~~-----~A~~G~~la~~a~~~G~aGiVidG~vRD~~~l~~ 130 (238)
T 3noj_A 84 GDVLVVSPSSPCT-----DGYFGDLLATSLQARGVRALIVDAGVRDTQTLRD 130 (238)
T ss_dssp TEEEEEEESSCCC-----SBCCCHHHHHHHHHTTCCEEEEEEEECCHHHHHH
T ss_pred CCEEEEECCCCCC-----eEehHHHHHHHHHHCCCcEEEeecccCCHHHHHh
Confidence 3556667654211 111134567788899999998887 78877764
No 223
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Probab=20.11 E-value=1.3e+02 Score=26.24 Aligned_cols=43 Identities=14% Similarity=0.191 Sum_probs=31.1
Q ss_pred cceEEEEECCCccCCchH--------HHHHHHhhhcCCCcEEEEEecCCCcc
Q psy786 76 SYRTYCLVGDGESAEGSI--------WEALHFASYYKLDNLCVIFDINRLGQ 119 (176)
Q Consensus 76 ~~~vv~~~GDG~~~~G~~--------~eal~~a~~~~lp~liiV~~nn~~~~ 119 (176)
+++|+++.-|-.+..|.. ..++..|.+.++| +|.+++..+-.+
T Consensus 105 Gr~V~V~a~D~tv~gGS~g~~~~~Ki~Ra~e~A~~~~lP-vI~l~dSgGArl 155 (588)
T 3gf3_A 105 GKWVYIVASDNKKMAGAWVPGQAENLIRCSDAAKMMHLP-LIYLLNCSGVEF 155 (588)
T ss_dssp TEEEEEEEECTTSGGGCBCTTHHHHHHHHHHHHHHHTCC-EEEEECCCCBCG
T ss_pred CEEEEEEEECCcccCCCCCHHHHHHHHHHHHHHHHcCCC-EEEEEcCCCcCc
Confidence 568899999976665532 3456788899999 667778777655
No 224
>3lrk_A Alpha-galactosidase 1; tetramer, GH27, glycoprotein, glycosida hydrolase; HET: NAG BTB; 1.95A {Saccharomyces cerevisiae} PDB: 3lrl_A* 3lrm_A*
Probab=20.04 E-value=1.3e+02 Score=25.60 Aligned_cols=42 Identities=17% Similarity=-0.039 Sum_probs=31.4
Q ss_pred HHHHhhcCceEEEecCCC-------H---HHHHHHHHHHHhhCCCcEEEEee
Q psy786 133 RKRLDAFGFNAVVVDGHD-------V---EHLVKVSSFKLQKAIGCVWIQRG 174 (176)
Q Consensus 133 ~~~a~a~G~~~~~vdG~d-------~---~~l~~al~~a~~~~~~P~lI~~~ 174 (176)
++.+...|++++++|... + .+-+.++++|+.+..+|++..++
T Consensus 135 a~~fa~WGVDylK~D~c~~~~~~~~~~~~~~~y~~m~~AL~~tGRpI~~Slc 186 (479)
T 3lrk_A 135 AQFFANNRVDYLKYDNCYNKGQFGTPEISYHRYKAMSDALNKTGRPVFYSLC 186 (479)
T ss_dssp HHHHHHTTCCEEEEECTTCTTCCSSHHHHHHHHHHHHHHHHHHCSCCEEEEC
T ss_pred HHHHHHhCCcEEEEccCCCccccCCcchhHHHHHHHHHHHHHhCCCeEEEec
Confidence 456777899999998542 2 24567788888777899888764
Done!