RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy786
(176 letters)
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis
sugar metaboli transferase; HET: TPP; 1.75A {Homo
sapiens} PDB: 3ooy_A*
Length = 616
Score = 246 bits (631), Expect = 1e-79
Identities = 96/142 (67%), Positives = 112/142 (78%)
Query: 15 AWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK 74
WAEAG +EL NLRKI SDL+GHP P+ F DV TGSLGQGL A GMAY GKYFDK
Sbjct: 83 VWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDK 142
Query: 75 ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
ASYR YCL+GDGE +EGS+WEA+ FAS YKLDNL I DINRLGQS+P LQHQ ++Y+K
Sbjct: 143 ASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQK 202
Query: 135 RLDAFGFNAVVVDGHDVEHLVK 156
R +AFG++A++VDGH VE L K
Sbjct: 203 RCEAFGWHAIIVDGHSVEELCK 224
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho;
thiamine diphosphate-dependent enzyme, alpha-beta fold;
HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A*
3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Length = 845
Score = 108 bits (270), Expect = 5e-28
Identities = 29/152 (19%), Positives = 50/152 (32%), Gaps = 16/152 (10%)
Query: 26 ELKNLRKIDSDLEGHPT---PRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCL 82
L+ + S G P+ P G LG LS A G + S C+
Sbjct: 145 GLQKFFRQFSYPGGIPSHFAPETPGSIHEGGELGYALSHAYGAV-----MNNPSLFVPCI 199
Query: 83 VGDGESAEGSI---WEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQT-EVYRKRLDA 138
+GDGE+ G + W++ + + I +N + PT L + E
Sbjct: 200 IGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYKIANPTILARISDEELHDFFRG 259
Query: 139 FGFNAVVV----DGHDVEHLVKVSSFKLQKAI 166
G++ D D + + + +
Sbjct: 260 MGYHPYEFVAGFDNEDHMSIHRRFAELFETIF 291
>3l84_A Transketolase; TKT, structural genomics, center for structur
genomics of infectious diseases, csgid, transferase;
HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A*
3m34_A* 3m7i_A*
Length = 632
Score = 90.2 bits (225), Expect = 1e-21
Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 13/139 (9%)
Query: 23 PVSELKNLRKIDSDLEGHP---TPRLNFIDVGTGSLGQGLSVAAGMAYVGKY------FD 73
+ +LKN R++ S GHP T +++ TG LGQG++ A G A K D
Sbjct: 84 SLEDLKNFRQLHSKTPGHPEISTLG---VEIATGPLGQGVANAVGFAMAAKKAQNLLGSD 140
Query: 74 KASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYR 133
++ YCL GDG+ EG +EA A +KLDN +I+D N + L E +
Sbjct: 141 LIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEGDVGLAF-NENVK 199
Query: 134 KRLDAFGFNAVVVDGHDVE 152
R +A GF + ++GHD E
Sbjct: 200 MRFEAQGFEVLSINGHDYE 218
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase,
structural genomics, center for structural genomics of
infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A
{Bacillus anthracis} PDB: 3hyl_A*
Length = 690
Score = 86.4 bits (215), Expect = 2e-20
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 18/144 (12%)
Query: 23 PVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMAYVGKY----FDK 74
+ +LKN R+ S GHP T +D TG LGQG++ A GMA ++ +++
Sbjct: 109 TMDDLKNFRQWGSKTPGHPEYGHTA---GVDATTGPLGQGIATAVGMAMAERHLAAKYNR 165
Query: 75 ASY-----RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQT 129
+Y TY + GDG+ EG EA A++ +L L V++D N + + +
Sbjct: 166 DAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSF-S 224
Query: 130 EVYRKRLDAFGFNAV-VVDGHDVE 152
E R A+G+ + V DG+D+E
Sbjct: 225 ESVEDRYKAYGWQVIRVEDGNDIE 248
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium,
metal-binding, thiamine pyrophosphate, transferase; HET:
T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6
c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Length = 669
Score = 85.2 bits (212), Expect = 5e-20
Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 23 PVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMA----YVGKYFDK 74
P+ ELKN R++ S GHP T ++ TG LGQG++ A GMA + F++
Sbjct: 83 PMEELKNFRQLHSKTPGHPEVGYTAG---VETTTGPLGQGIANAVGMAIAEKTLAAQFNR 139
Query: 75 ASY-----RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQT 129
+ TY +GDG EG E A KL L +D N + T
Sbjct: 140 PGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-T 198
Query: 130 EVYRKRLDAFGFNAV-VVDGHDVE 152
+ R +A+G++ + +DGHD
Sbjct: 199 DDTAMRFEAYGWHVIRDIDGHDAA 222
>2e6k_A Transketolase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 2.09A
{Thermus thermophilus}
Length = 651
Score = 85.2 bits (212), Expect = 6e-20
Identities = 51/144 (35%), Positives = 72/144 (50%), Gaps = 18/144 (12%)
Query: 23 PVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMA----YVGKYFDK 74
P+ ELK+ R+ S GHP TP ++V TG LGQG+S A G+A + F++
Sbjct: 87 PLEELKSFRQWGSKTPGHPERGHTPG---VEVTTGPLGQGISTAVGLALAERKLAAEFNR 143
Query: 75 ASY-----RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQT 129
+ TY L DG+ EG EA A ++ L L V +D NR+ PT L T
Sbjct: 144 PGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRISIDGPTDLAF-T 202
Query: 130 EVYRKRLDAFGFNAV-VVDGHDVE 152
E R A+G+ + V D +D+E
Sbjct: 203 EDVLARYRAYGWQTLRVEDVNDLE 226
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium
tuberculosis}
Length = 700
Score = 85.3 bits (212), Expect = 6e-20
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 31/152 (20%)
Query: 23 PVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMAYVGKY----FDK 74
+S++++LR S GHP TP +++ TG LGQGL+ A GMA +Y FD
Sbjct: 102 ELSDIESLRTWGSKTPGHPEFRHTP---GVEITTGPLGQGLASAVGMAMASRYERGLFDP 158
Query: 75 AS--------YRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ 126
+ + Y + DG+ EG EA A+ +L NL V +D N++ S++
Sbjct: 159 DAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQI------SIE 212
Query: 127 HQTEVY-----RKRLDAFGFNAV-VVDGHDVE 152
T + R A+G++ V G +V
Sbjct: 213 DDTNIALCEDTAARYRAYGWHVQEVEGGENVV 244
>3uk1_A Transketolase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, thiamine
pyrophosphate; 2.15A {Burkholderia thailandensis} PDB:
3upt_A*
Length = 711
Score = 84.1 bits (209), Expect = 1e-19
Identities = 50/147 (34%), Positives = 71/147 (48%), Gaps = 24/147 (16%)
Query: 23 PVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMA----YVGKYFDK 74
P+ ELKN R++ S GHP TP ++ TG LGQGL+ A GMA + F++
Sbjct: 124 PIEELKNFRQLHSKTPGHPEYGITPG---VETTTGPLGQGLANAVGMALGEALLAAEFNR 180
Query: 75 ASY-----RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRL---GQSEPTSLQ 126
TY +GDG EG EA A KL+ L ++D N + G
Sbjct: 181 DDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWF-- 238
Query: 127 HQTEVYRKRLDAFGFNAV-VVDGHDVE 152
+ KR +A+G+N + V+GHDV+
Sbjct: 239 --HDDTPKRFEAYGWNVIPNVNGHDVD 263
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural
genomics, center for structural genomics of infectious
DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Length = 663
Score = 83.7 bits (208), Expect = 2e-19
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 23 PVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMA----YVGKYFDK 74
+ ++KN R++ S GHP TP ++ TG LGQG++ A GMA + ++
Sbjct: 85 SIEDIKNFRQLHSKTPGHPEYGYTPG---VETTTGPLGQGVANAVGMALGEKLLSDRYNT 141
Query: 75 ASY-----RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQT 129
TY +GDG EG EA A L+ L +D N + T +
Sbjct: 142 PDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNISIDGDTKGWF-S 200
Query: 130 EVYRKRLDAFGFNAV-VVDGHDVE 152
+ +R A+G++ + VDGHD
Sbjct: 201 DNTPERFRAYGWHVIENVDGHDFV 224
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate,
plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1
Length = 675
Score = 82.1 bits (204), Expect = 6e-19
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 18/142 (12%)
Query: 23 PVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMA----YVGKYFDK 74
+LK R+ S GHP TP ++V TG LGQG++ A G+A ++ F+K
Sbjct: 96 KEEDLKQFRQWGSRTPGHPENFETPG---VEVTTGPLGQGIANAVGLALAEKHLAARFNK 152
Query: 75 ASY-----RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQT 129
TY ++GDG EG EA A ++ L L +D N + T + T
Sbjct: 153 PDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAF-T 211
Query: 130 EVYRKRLDAFGFNAV-VVDGHD 150
E R +A G++ + V +G+
Sbjct: 212 EDVSTRFEALGWHTIWVKNGNT 233
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A
{Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10
c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A*
1tkc_A*
Length = 680
Score = 81.8 bits (203), Expect = 8e-19
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 28/149 (18%)
Query: 23 PVSELKNLRKIDSDLEGHP---TPRLNFIDVGTGSLGQGLSVAAGMA----YVGKYFDKA 75
+ +LK R++ S GHP P ++V TG LGQG+S A GMA + ++K
Sbjct: 86 SIEDLKQFRQLGSRTPGHPEFELPG---VEVTTGPLGQGISNAVGMAMAQANLAATYNKP 142
Query: 76 SY-----RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTE 130
+ TY +GDG EG EA A + KL NL I+D N++ ++ T
Sbjct: 143 GFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKI------TIDGATS 196
Query: 131 VY-----RKRLDAFGFNAV-VVDGH-DVE 152
+ KR +A+G+ + V +G+ D+
Sbjct: 197 ISFDEDVAKRYEAYGWEVLYVENGNEDLA 225
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine
diphosphate binding domain, transferase; HET: TPP; 2.22A
{Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10
c.48.1.1
Length = 673
Score = 78.3 bits (194), Expect = 1e-17
Identities = 48/141 (34%), Positives = 68/141 (48%), Gaps = 17/141 (12%)
Query: 23 PVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMA----YVGKYFDK 74
+ +LK R+ S GHP TP ++V TG LGQG++ A G+A ++ F++
Sbjct: 85 TMDDLKGFRQDGSRTPGHPERFVTPG---VEVTTGPLGQGIANAVGLAIAEAHLAATFNR 141
Query: 75 ASY-----RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQT 129
Y TY GDG EG EAL A + L+ L VI+D N + TSL T
Sbjct: 142 PGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDGSTSLSF-T 200
Query: 130 EVYRKRLDAFGFNAVVVDGHD 150
E ++ A GF+ + V D
Sbjct: 201 EQCHQKYVAMGFHVIEVKNGD 221
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB:
3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Length = 368
Score = 63.4 bits (155), Expect = 1e-12
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 52 TGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVI 111
+G AAG+A K GDG +++G +E ++FA +K I
Sbjct: 141 QIIIGAQYIQAAGVALGLKM-RGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAP---AI 196
Query: 112 FDI--NRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDV 151
F + NR S P Q + ++ A G + VDG D
Sbjct: 197 FVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDP 238
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A*
1umb_A*
Length = 367
Score = 63.4 bits (155), Expect = 2e-12
Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 6/103 (5%)
Query: 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCV 110
+ + AAG A K + C GDG ++EG + ++FA+
Sbjct: 142 VASPIASHVPPAAGAAISMKL-LRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAP---A 197
Query: 111 IFDI--NRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDV 151
+F N S Q + + AFG +VDG DV
Sbjct: 198 VFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDV 240
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A*
2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A*
1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A*
1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Length = 400
Score = 62.3 bits (152), Expect = 4e-12
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 39 GHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALH 98
+ +F+ + L + A G AY K A+ C G+G ++EG +
Sbjct: 149 HYGCKERHFV-TISSPLATQIPQAVGAAYAAKR-ANANRVVICYFGEGAASEGDAHAGFN 206
Query: 99 FASYYKLDNLCVIFDI--NRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDV 151
FA+ + +IF N S PTS Q++ + R +G ++ VDG+DV
Sbjct: 207 FAATLECP---IIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDV 258
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.11 PDB: 2bp7_A
Length = 407
Score = 61.2 bits (149), Expect = 8e-12
Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 8/117 (6%)
Query: 38 EGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEAL 97
+ F + +G+L A G A + +GDG +AE AL
Sbjct: 167 IMYSVREAGFFTI-SGNLATQFVQAVGWAMASAI-KGDTKIASAWIGDGATAESDFHTAL 224
Query: 98 HFASYYKLDNLCVIFDI--NRLGQSEPTSLQ-HQTEVYRKRLDAFGFNAVVVDGHDV 151
FA Y+ VI ++ N+ S ++ ++ + R G ++ VDG+D
Sbjct: 225 TFAHVYRAP---VILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDF 278
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit,
somatic form; pyruvate_dehydrogenase_complex, human,
multienzyme_complex_component; HET: TPP; 1.90A {Homo
sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A
3exh_A* 3exg_A 3exf_A*
Length = 365
Score = 59.2 bits (144), Expect = 4e-11
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCV 110
G G +G + + AG+A KY K L GDG + +G I+EA + A+ +KL
Sbjct: 138 GNGIVGAQVPLGAGIALACKYNGKDEV-CLTLYGDGAANQGQIFEAYNMAALWKLP---C 193
Query: 111 IFDI--NRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVE 152
IF NR G + Y KR + VDG D+
Sbjct: 194 IFICENNRYGMGTSVERAAASTDYYKR--GDFIPGLRVDGMDIL 235
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate,
glycolysis, MAG metal-binding, oxidoreductase, thiamine
pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A*
2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Length = 886
Score = 44.4 bits (105), Expect = 6e-06
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 13 SKAWAEAGLFPVSELKNLRK-IDSD-LEGHPTPRL--NFIDVGTGSLGQGLSVAAGMAYV 68
++A+ E G +L N R+ + + L +P P+L F T S+G G A A
Sbjct: 149 ARAFLE-GRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKF 207
Query: 69 GKY------FDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDIN 115
KY D + Y +GDGE E A+ A+ KLDNL + + N
Sbjct: 208 LKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCN 260
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A
{Lactobacillus delbrueckii subsp}
Length = 205
Score = 29.9 bits (68), Expect = 0.29
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 37 LEGHPTPRLNFIDVGTGSLGQG-LSVAA 63
+E L DVGTGS G L++AA
Sbjct: 54 IERAMVKPLTVADVGTGS---GILAIAA 78
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid,
transferase; HET: TDP; 2.40A {Escherichia coli}
Length = 621
Score = 30.2 bits (69), Expect = 0.32
Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 44/141 (31%)
Query: 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLG 118
+S G+A V + + RT C++GDG G +EA++ A + ++ VI + N +
Sbjct: 127 ISAGIGIA-VAAEKEGKNRRTVCVIGDGAITAGMAFEAMNHAGDIR-PDMLVILNDNEMS 184
Query: 119 QSEPT----------------------------------SLQHQTEVYRKRL-------D 137
SE L +TE + K + +
Sbjct: 185 ISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMVVPGTLFE 244
Query: 138 AFGFNAV-VVDGHDVEHLVKV 157
GFN + VDGHDV L+
Sbjct: 245 ELGFNYIGPVDGHDVLGLITT 265
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.36
Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 26 ELKNLRKIDSDLEGH-P--TPRL 45
E + L+K+ + L+ + P L
Sbjct: 18 EKQALKKLQASLKLYADDSAPAL 40
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.41
Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 25/114 (21%)
Query: 53 GSLGQGLSVAAGMAYVG----KYFDKA-SYRTYCLVGDGESAEGSIWE-ALHFASYYKLD 106
GSL L V ++ + F+K T D E + E F Y
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT--TPAELVGKFLGY---- 67
Query: 107 NLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSF 160
++ EP+ + +V L F ++G+D+ H + +
Sbjct: 68 -------VSS--LVEPSKVGQFDQVLNLCLTE--FENCYLEGNDI-HAL-AAKL 108
Score = 28.5 bits (63), Expect = 1.3
Identities = 27/161 (16%), Positives = 45/161 (27%), Gaps = 60/161 (37%)
Query: 42 TPRLNFIDVGTGSLG--QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHF 99
TP G+ G QGL A +A ES S+ +A+
Sbjct: 259 TPG-ELRSYLKGATGHSQGLVTAVAIA---------------ETDSWESFFVSVRKAITV 302
Query: 100 ASY--------YKLDNLC--VIFDINRLGQSEPTSL-------QHQTEVYRKRLDAF--- 139
+ Y +L ++ D + P+ + Q Q + ++
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ---DYVNKTNSH 359
Query: 140 -------------GFNAVVVDGH--DVEHLVKVSSFKLQKA 165
G +VV G + L L+KA
Sbjct: 360 LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL----TLRKA 396
Score = 26.6 bits (58), Expect = 5.5
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 8 FRTNRSKA-----WAEAGL-----FPVSEL--KNLRKIDSDLEGHPTPRLNFIDV 50
F + KA + G+ +P + L L + EG P+P L+ ++
Sbjct: 292 FFVSVRKAITVLFFI--GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate
synthase; menaquinone biosynthesis, sephchc synthase,
structural genomics; 2.60A {Listeria monocytogenes}
Length = 578
Score = 29.8 bits (67), Expect = 0.47
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 7/36 (19%)
Query: 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDG 86
G + +S A G + V + + L+GD
Sbjct: 434 GANGIDGVVSSALGASVVFQ-------PMFLLIGDL 462
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS,
transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Length = 629
Score = 29.4 bits (67), Expect = 0.65
Identities = 22/144 (15%), Positives = 41/144 (28%), Gaps = 47/144 (32%)
Query: 59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVI------- 111
L+ A GMA + + + ++GDG G AL+ + ++
Sbjct: 129 LTNALGMA-LARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMG-RKMLIVLNDNEMS 186
Query: 112 -------------------------FDINRLGQSEPTSLQH---QTEVYRKRL------- 136
+ ++ L + + +
Sbjct: 187 ISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASVN 246
Query: 137 --DAFGFNAV-VVDGHDVEHLVKV 157
A G V VDGH+V+ LV +
Sbjct: 247 PFAAMGVRYVGPVDGHNVQELVWL 270
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 28.8 bits (65), Expect = 0.74
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 37 LEGHPTPRLNFIDVGTGSLGQG-LSVAA 63
L H P +D+GTGS G L++AA
Sbjct: 114 LARHLRPGDKVLDLGTGS---GVLAIAA 138
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains
containing mixed alpha/beta structures, PSI; HET: PLM;
2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Length = 289
Score = 26.4 bits (59), Expect = 4.8
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 37 LEGHPTPRLNFIDVGTGSLGQGLSV--AAGMAYVGKYFD 73
L+ +P RL ID SLGQGL+V A +A ++
Sbjct: 108 LDEYPEFRLTIIDSKCASLGQGLAVMKAVELAKQNTPYN 146
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein,
structural genomics, PSI- protein structure initiative;
HET: STE; 1.90A {Eubacterium ventriosum}
Length = 297
Score = 26.5 bits (59), Expect = 5.6
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 37 LEGHPTPRLNFIDVGTGSLGQGLSV--AAGMAYVGKYFD 73
LE +P + ID ++ Q L + M G F+
Sbjct: 111 LEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLSFE 149
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding
protein; HET: PLM; 2.50A {Bacillus subtilis}
Length = 315
Score = 26.1 bits (58), Expect = 7.5
Identities = 7/38 (18%), Positives = 9/38 (23%), Gaps = 2/38 (5%)
Query: 38 EGHPTPRLNFIDVGTGSLGQGLSV--AAGMAYVGKYFD 73
+ D L QG AA + G
Sbjct: 138 SMVDNIDVYPFDSEISCLAQGFYALKAAELIKNGASSP 175
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding
protein, lipid binding protein; HET: PLM; 2.04A
{Streptococcus mutans}
Length = 320
Score = 26.1 bits (58), Expect = 7.7
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 37 LEGHPTPRLNFIDVGTGSLGQGLSV--AAGMAYVGKYFD 73
LE +P + +D + G+G AA GK
Sbjct: 142 LEEYPQASIEIVDTLAATGGEGYLAMLAAQAREEGKSLK 180
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2,
protein ST initiative, midwest center for structural
genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium
eligens}
Length = 278
Score = 25.6 bits (57), Expect = 9.1
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 37 LEGHPTPRLNFIDVGTGSLGQGLSV--AAGMAYVGKYFD 73
LE HP ++ ID + + + M GK F+
Sbjct: 102 LEEHPQAKVRVIDSKSTGPQMRIILEQLQQMIEEGKKFE 140
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics,
PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A
{Ruminococcus gnavus}
Length = 298
Score = 25.7 bits (57), Expect = 9.3
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 37 LEGHPTPRLNFIDVGTGSLGQGLSV--AAGMAYVGKYFD 73
E + +++ + + S+G+ L G F+
Sbjct: 123 EEEYGEKQIHVFNSRSASVGETLIALKVQQCEKAGMTFE 161
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.424
Gapped
Lambda K H
0.267 0.0815 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,743,885
Number of extensions: 154785
Number of successful extensions: 509
Number of sequences better than 10.0: 1
Number of HSP's gapped: 462
Number of HSP's successfully gapped: 36
Length of query: 176
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 89
Effective length of database: 4,272,666
Effective search space: 380267274
Effective search space used: 380267274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.4 bits)