RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy786
(176 letters)
>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 335
Score = 101 bits (252), Expect = 9e-27
Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 11/145 (7%)
Query: 16 WAEAGL-FPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVG----- 69
G + +LK R++ S GHP L ++V TG LGQG+S A GMA
Sbjct: 76 LHLTGYDLSIEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAA 135
Query: 70 ----KYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL 125
F + TY +GDG EG EA A + KL NL I+D N++ TS+
Sbjct: 136 TYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSI 195
Query: 126 QHQTEVYRKRLDAFGFNAVVVDGHD 150
E KR +A+G+ + V+ +
Sbjct: 196 SFD-EDVAKRYEAYGWEVLYVENGN 219
>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 83.7 bits (206), Expect = 3e-20
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 12/138 (8%)
Query: 16 WAEAGL-FPVSELKNLRKIDSDLEGHPTPRLN-FIDVGTGSLGQGLSVAAGMAYVGKY-- 71
G P+ ELKN R++ S GHP ++ TG LGQG++ A GMA K
Sbjct: 74 LHLTGYDLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLA 133
Query: 72 -------FDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS 124
D + TY +GDG EG E A KL L +D N + +
Sbjct: 134 AQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI-SIDGHV 192
Query: 125 LQHQTEVYRKRLDAFGFN 142
T+ R +A+G++
Sbjct: 193 EGWFTDDTAMRFEAYGWH 210
>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component,
PP module {Escherichia coli [TaxId: 562]}
Length = 415
Score = 71.8 bits (175), Expect = 7e-16
Identities = 33/146 (22%), Positives = 48/146 (32%), Gaps = 11/146 (7%)
Query: 16 WAEAGLFPVSELKNLRKIDSDL----EGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKY 71
G +L N R+ HP F T S+G G A A KY
Sbjct: 96 AFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKY 155
Query: 72 FD------KASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL 125
+ + Y +GDGE E A+ A+ KLDNL + + N P +
Sbjct: 156 LEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTG 215
Query: 126 QHQ-TEVYRKRLDAFGFNAVVVDGHD 150
+ + G+N + V
Sbjct: 216 NGKIINELEGIFEGAGWNVIKVMWGS 241
>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize
(Zea mays) [TaxId: 4577]}
Length = 338
Score = 65.2 bits (158), Expect = 1e-13
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 11/150 (7%)
Query: 26 ELKNLRKIDSDLEGHPTPRLN-FIDVGTGSLGQGLSVAAGMAYVGKY---------FDKA 75
+LK R+ S GHP ++V TG LGQG++ A G+A K+ +
Sbjct: 90 DLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIV 149
Query: 76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135
+ TY ++GDG EG EA A ++ L L +D N + + TE R
Sbjct: 150 DHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDN-HISIDGDTEIAFTEDVSTR 208
Query: 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQKA 165
+A G++ + V + + ++ K KA
Sbjct: 209 FEALGWHTIWVKNGNTGYDDIRAAIKEAKA 238
>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 336
Score = 60.7 bits (146), Expect = 6e-12
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 11/142 (7%)
Query: 22 FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKY--------- 71
+ +LK R+ S GHP ++V TG LGQG++ A G+A +
Sbjct: 82 LTMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPG 141
Query: 72 FDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEV 131
++ + TY GDG EG EAL A + L+ L VI+D N + + ++ TE
Sbjct: 142 YNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYI-SIDGSTSLSFTEQ 200
Query: 132 YRKRLDAFGFNAVVVDGHDVEH 153
++ A GF+ + V D ++
Sbjct: 201 CHQKYVAMGFHVIEVKNGDTDY 222
>d1gwya_ b.97.1.1 (A:) Sticholysin II {Carribean sea anemone
(Stoichactis helianthus) [TaxId: 6123]}
Length = 175
Score = 29.8 bits (67), Expect = 0.12
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 6 IPFRTNRSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGM 65
+PF N W + ++ + + G+P N +LG GL + M
Sbjct: 104 VPFDYNWYSNWWDVKIYSGKRRADQGMYEDLYYGNPYRGDNG--WHEKNLGYGLRMKGIM 161
Query: 66 AYVGK 70
G+
Sbjct: 162 TSAGE 166
>d1u1ia1 c.2.1.3 (A:1-227,A:333-392) Myo-inositol 1-phosphate
synthase {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 287
Score = 28.0 bits (62), Expect = 0.57
Identities = 4/37 (10%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 115 NRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDV 151
G + L + + ++ + + GH++
Sbjct: 23 IERGIAPKIGLVSELPHFE-GIEKYAPFSFEFGGHEI 58
>d1pzxa_ c.119.1.1 (A:) Hypothetical protein apc36103 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 287
Score = 27.2 bits (60), Expect = 1.0
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 11/60 (18%)
Query: 37 LEGHPTPRLNFIDVGTGSLGQGLSV--AAGMAYVGKYFD---------KASYRTYCLVGD 85
L+ +P RL ID SLGQGL+V A +A ++ V +
Sbjct: 106 LDEYPEFRLTIIDSKCASLGQGLAVMKAVELAKQNTPYNLLCETIESYCRHMEHIFTVDN 165
>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 201
Score = 26.0 bits (56), Expect = 2.2
Identities = 21/131 (16%), Positives = 38/131 (29%), Gaps = 22/131 (16%)
Query: 27 LKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDG 86
K L S L+G P++ T + A+ + ++ + V D
Sbjct: 2 KKELAIALSKLKGFKNPKVWLEQYRTPG-----NAASELLWLAYSLGDIEGKV---VADL 53
Query: 87 ESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVV 146
+ G + + +CV D + +V + L F V
Sbjct: 54 GAGTG--VLSYGALLLGAKEVICVEVDKEAV------------DVLIENLGEFKGKFKVF 99
Query: 147 DGHDVEHLVKV 157
G E +V
Sbjct: 100 IGDVSEFNSRV 110
>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 92
Score = 24.8 bits (53), Expect = 2.7
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 15/96 (15%)
Query: 43 PR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFAS 101
P+ L SL L A +Y Y + + E + + + +
Sbjct: 4 PKNLRVGSRTATSLD--LEWDNSEAEAQEY-----KVVYSTLAGEQYHEVLVPKGIGPTT 56
Query: 102 YYKLDNLCV-------IFDINRLGQSEPTSLQHQTE 130
L +L I + QS P ++ +TE
Sbjct: 57 KTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTE 92
>d1syxb1 d.76.1.1 (B:25-86) GYF domain from cd2bp2 protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 24.3 bits (53), Expect = 3.0
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 7 PFRTNRSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNF 47
PF + + + W G FP + + + + + R++F
Sbjct: 19 PFTSAQMQTWVSEGYFP-DGVYCRKLDPPGGQFYNSKRIDF 58
>d2hc5a1 d.352.1.1 (A:1-109) Hypothetical protein YvyC {Bacillus
subtilis [TaxId: 1423]}
Length = 109
Score = 24.8 bits (54), Expect = 3.5
Identities = 8/53 (15%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 114 INRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAI 166
I RL +P ++ T+++ ++ + V ++ +V ++ K +
Sbjct: 3 IERLTTLQPVWDRYDTQIHNQKDNDNEVPVHQVSYTNLAEMVG----EMNKLL 51
>d3proc1 d.52.1.1 (C:6-85) Alpha-lytic protease prodomain
{Lysobacter enzymogenes [TaxId: 69]}
Length = 80
Score = 23.6 bits (51), Expect = 6.1
Identities = 6/41 (14%), Positives = 14/41 (34%)
Query: 53 GSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSI 93
+ + G + G + ++ ++ LV A S
Sbjct: 29 RTQAAAIEREFGAQFAGSWIERNEDGSFKLVAATSGARKSS 69
>d1fepa_ f.4.3.3 (A:) Ferric enterobactin receptor FepA {Escherichia
coli [TaxId: 562]}
Length = 714
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 42 TPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFAS 101
P + + LS+ + GK K E+ E S + + ++
Sbjct: 592 IPEYTLNSTLSWQAREDLSMQTTFTWYGKQQPKKYNYKGQPAVGPETKEISPYSIVGLSA 651
Query: 102 YYKL-DNLCVIFDINRL 117
+ + N+ + ++ L
Sbjct: 652 TWDVTKNVSLTGGVDNL 668
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.424
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 668,496
Number of extensions: 28728
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 15
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)