BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7862
(101 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DRH5|NOP10_DANRE H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio GN=nop10
PE=3 SV=1
Length = 64
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/60 (75%), Positives = 53/60 (88%)
Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
M+L +YL E+G+RVYTLKKVDP+G PT SAHPARFSPDDK+SR R+TI +RFGLL TQQP
Sbjct: 1 MFLQFYLNENGERVYTLKKVDPSGQPTSSAHPARFSPDDKFSRHRVTIKKRFGLLLTQQP 60
>sp|Q9CQS2|NOP10_MOUSE H/ACA ribonucleoprotein complex subunit 3 OS=Mus musculus
GN=Nop10 PE=3 SV=1
Length = 64
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 47/60 (78%)
Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
M+L YYL E G RVYTLKK DP G T SAHPARFSPDDKYSR RITI +RF +L TQQP
Sbjct: 1 MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60
>sp|Q9NPE3|NOP10_HUMAN H/ACA ribonucleoprotein complex subunit 3 OS=Homo sapiens
GN=NOP10 PE=1 SV=1
Length = 64
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 47/60 (78%)
Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
M+L YYL E G RVYTLKK DP G T SAHPARFSPDDKYSR RITI +RF +L TQQP
Sbjct: 1 MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60
>sp|Q9V5P6|NOP10_DROME H/ACA ribonucleoprotein complex subunit 3 OS=Drosophila
melanogaster GN=CG7637 PE=1 SV=1
Length = 64
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 50/60 (83%)
Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
MYLMY + E+G RVYTLKK G PT+SAHPARFSP+DKYSR+R+TI +RFGLL TQ+P
Sbjct: 1 MYLMYTINENGDRVYTLKKRTEDGRPTLSAHPARFSPEDKYSRQRLTIKKRFGLLLTQKP 60
>sp|Q9P7M5|NOP10_SCHPO H/ACA ribonucleoprotein complex subunit 3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=nop10 PE=3 SV=1
Length = 64
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 50/62 (80%)
Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
M+LMYYL ++GKRVYTLKKV P G T S+HPARFSPDDKYSR+R T+ +RF +L TQ P
Sbjct: 1 MHLMYYLNDEGKRVYTLKKVSPDGRVTKSSHPARFSPDDKYSRQRYTLKKRFHVLLTQLP 60
Query: 98 AS 99
A
Sbjct: 61 AK 62
>sp|Q54J26|NOP10_DICDI H/ACA ribonucleoprotein complex subunit 3 OS=Dictyostelium
discoideum GN=nop10 PE=3 SV=1
Length = 64
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 47/60 (78%)
Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
M+LMYY +DG+RVYTLKK P T SAHPARFS DDKYSRERI + +RFGLL TQQP
Sbjct: 1 MHLMYYNDKDGQRVYTLKKESPNHEATYSAHPARFSVDDKYSRERIALKKRFGLLLTQQP 60
>sp|Q74Z52|NOP10_ASHGO H/ACA ribonucleoprotein complex subunit 3 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=NOP10 PE=3 SV=2
Length = 57
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/55 (72%), Positives = 47/55 (85%)
Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLL 92
M+LMY LG DGKRVYTL+KV P+G T SAHPARFSPDDKYSR+R+T+ RRF +L
Sbjct: 1 MHLMYTLGPDGKRVYTLEKVTPSGEITKSAHPARFSPDDKYSRQRVTLKRRFDML 55
>sp|Q6Q547|NOP10_YEAST H/ACA ribonucleoprotein complex subunit 3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NOP10 PE=1
SV=1
Length = 58
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 47/55 (85%)
Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLL 92
M+LMY LG DGKR+YTLKKV +G T SAHPARFSPDDKYSR+R+T+ +RFGL+
Sbjct: 1 MHLMYTLGPDGKRIYTLKKVTESGEITKSAHPARFSPDDKYSRQRVTLKKRFGLV 55
>sp|Q6BQP3|NOP10_DEBHA H/ACA ribonucleoprotein complex subunit 3 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=NOP10 PE=3 SV=1
Length = 58
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 46/58 (79%)
Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQ 95
M+LMY LG DGKRVYTL K G T SAHPARFSPDDKYSR+R+T+ +RFGLL TQ
Sbjct: 1 MHLMYTLGPDGKRVYTLNKTTSDGEITKSAHPARFSPDDKYSRQRVTLKKRFGLLPTQ 58
>sp|Q6JZK2|NOP10_TRYCR H/ACA ribonucleoprotein complex subunit 3-like protein
OS=Trypanosoma cruzi PE=3 SV=1
Length = 63
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 48/59 (81%), Gaps = 1/59 (1%)
Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQ 96
M+L Y+ +GKR YTLKK+DP G PT+SAHPARFSPDDKYSR RITI RRF L++++
Sbjct: 1 MHLQVYIV-NGKRQYTLKKMDPEGKPTLSAHPARFSPDDKYSRHRITIKRRFKALKSEK 58
>sp|Q6FNL3|NOP10_CANGA H/ACA ribonucleoprotein complex subunit 3 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=NOP10 PE=3 SV=1
Length = 57
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 44/55 (80%)
Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLL 92
M+LMY L +GKRVYTLKK+ G T SAHPARFSPDDKYSR+R+T+ +R+ LL
Sbjct: 1 MHLMYTLDNEGKRVYTLKKMTEEGEITKSAHPARFSPDDKYSRQRVTLKKRYNLL 55
>sp|Q93XX8|NOP10_ARATH H/ACA ribonucleoprotein complex subunit 3-like protein
OS=Arabidopsis thaliana GN=At2g20490 PE=2 SV=2
Length = 64
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 44/59 (74%)
Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQ 96
MYL Y+ E G++VYT KK P G T SAHPARFSPDDKYS++R+ + +RFGLL TQ
Sbjct: 1 MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQN 59
>sp|Q9XVR8|NOP10_CAEEL Putative H/ACA ribonucleoprotein complex subunit 3-like protein
OS=Caenorhabditis elegans GN=C25A1.6 PE=3 SV=2
Length = 64
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 48/64 (75%)
Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
M+L Y+L E+ +RVYTLK+ P+G T++AHPARFSP+DK S+ RI I +RFGLL TQ+
Sbjct: 1 MFLRYFLDENQQRVYTLKRTAPSGEQTLTAHPARFSPEDKNSKYRIIIKKRFGLLPTQKA 60
Query: 98 ASAM 101
+
Sbjct: 61 KTVC 64
>sp|Q6CSZ0|NOP10_KLULA H/ACA ribonucleoprotein complex subunit 3 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=NOP10 PE=3 SV=1
Length = 57
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 42/55 (76%)
Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLL 92
M+LMY L GKR+YTLKK+ T SAHPARFSPDDKYSR+R+T+ +R+ LL
Sbjct: 1 MHLMYTLDAQGKRIYTLKKMTEDNEITKSAHPARFSPDDKYSRQRVTLKKRYNLL 55
>sp|A9A115|NOP10_NITMS Ribosome biogenesis protein Nop10 OS=Nitrosopumilus maritimus
(strain SCM1) GN=nop10 PE=3 SV=1
Length = 51
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 52 YTLKKVDP-AGNPTVSAHPARFSPDDKYSRERIT 84
YTLK++ P T+SAHPA+FSPDDKY R R+
Sbjct: 14 YTLKEICPKCKEQTISAHPAKFSPDDKYMRYRLA 47
>sp|Q973G1|NOP10_SULTO Ribosome biogenesis protein Nop10 OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=nop10 PE=3
SV=1
Length = 56
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 52 YTLKKVDP-AGNPTVSAHPARFSPDDKYSRERITILRRFGL 91
YTLK + P G PT+ HPARFSP DKY + RI I + L
Sbjct: 14 YTLKDICPICGTPTIIPHPARFSPVDKYVKYRIEIKKGIKL 54
>sp|C3NDP2|NOP10_SULIY Ribosome biogenesis protein Nop10 OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=nop10 PE=3 SV=1
Length = 56
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 51 VYTLKKVDP-AGNPTVSAHPARFSPDDKYSRERITILRRFGL 91
YT K + P G+ T+ HP+RFSP+DKY + RI + + L
Sbjct: 13 TYTFKDICPVCGSKTMIPHPSRFSPEDKYVKYRIELKKGVKL 54
>sp|C3NI09|NOP10_SULIN Ribosome biogenesis protein Nop10 OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=nop10 PE=3 SV=1
Length = 56
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 51 VYTLKKVDP-AGNPTVSAHPARFSPDDKYSRERITILRRFGL 91
YT K + P G+ T+ HP+RFSP+DKY + RI + + L
Sbjct: 13 TYTFKDICPVCGSKTMIPHPSRFSPEDKYVKYRIELKKGVKL 54
>sp|C3MYF0|NOP10_SULIM Ribosome biogenesis protein Nop10 OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=nop10 PE=3 SV=1
Length = 56
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 51 VYTLKKVDP-AGNPTVSAHPARFSPDDKYSRERITILRRFGL 91
YT K + P G+ T+ HP+RFSP+DKY + RI + + L
Sbjct: 13 TYTFKDICPVCGSKTMIPHPSRFSPEDKYVKYRIELKKGVKL 54
>sp|C3MPG2|NOP10_SULIL Ribosome biogenesis protein Nop10 OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=nop10 PE=3 SV=1
Length = 56
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 51 VYTLKKVDP-AGNPTVSAHPARFSPDDKYSRERITILRRFGL 91
YT K + P G+ T+ HP+RFSP+DKY + RI + + L
Sbjct: 13 TYTFKDICPVCGSKTMIPHPSRFSPEDKYVKYRIELKKGVKL 54
>sp|C4KGP7|NOP10_SULIK Ribosome biogenesis protein Nop10 OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=nop10 PE=3 SV=1
Length = 56
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 51 VYTLKKVDP-AGNPTVSAHPARFSPDDKYSRERITILRRFGL 91
YT K + P G+ T+ HP+RFSP+DKY + RI + + L
Sbjct: 13 TYTFKDICPVCGSKTMIPHPSRFSPEDKYVKYRIELKKGVKL 54
>sp|C3N544|NOP10_SULIA Ribosome biogenesis protein Nop10 OS=Sulfolobus islandicus
(strain M.16.27) GN=nop10 PE=3 SV=1
Length = 56
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 51 VYTLKKVDP-AGNPTVSAHPARFSPDDKYSRERITILRRFGL 91
YT K + P G+ T+ HP+RFSP+DKY + RI + + L
Sbjct: 13 TYTFKDICPVCGSKTMIPHPSRFSPEDKYVKYRIELKKGVKL 54
>sp|Q97Z78|NOP10_SULSO Ribosome biogenesis protein Nop10 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
GN=nop10 PE=3 SV=1
Length = 56
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 51 VYTLK-KVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGL 91
+YT K G+ TV HP+RFSP+DKY + RI + + L
Sbjct: 13 IYTFKDTCQICGSKTVIPHPSRFSPEDKYVKYRIELKKGITL 54
>sp|Q5JE48|NOP10_PYRKO Ribosome biogenesis protein Nop10 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=nop10 PE=3
SV=1
Length = 59
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 52 YTLKKVDP-AGNPTVSAHPARFSPDDKYSRERITILR 87
YTLK+V P G+ T AHP RFSP+D Y R + R
Sbjct: 14 YTLKEVCPVCGSETKVAHPPRFSPEDPYGEYRRRLKR 50
>sp|A8AAJ4|NOP10_IGNH4 Ribosome biogenesis protein Nop10 OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=nop10 PE=3
SV=1
Length = 64
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 39 YLMYYLGEDGKRVYTLKKVDPAGN-PTVSAHPARFSPDDKYSRERITILRRFGLLRTQQP 97
+LM G+ YT K V P N T HP RFSP+DKY + R+ L ++P
Sbjct: 3 FLMKKCVRCGR--YTFKDVCPVCNGQTTVPHPPRFSPEDKYVKYRV-----LAKLTKERP 55
Query: 98 AS 99
+S
Sbjct: 56 SS 57
>sp|Q8U1R4|NOP10_PYRFU Ribosome biogenesis protein Nop10 OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=nop10 PE=1
SV=1
Length = 60
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 52 YTLKKVDP-AGNPTVSAHPARFSPDDKYS 79
YTLK+V P G T AHP RFSP+D Y
Sbjct: 14 YTLKEVCPVCGEKTKVAHPPRFSPEDPYG 42
>sp|B6YT36|NOP10_THEON Ribosome biogenesis protein Nop10 OS=Thermococcus onnurineus
(strain NA1) GN=nop10 PE=3 SV=1
Length = 58
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Query: 52 YTLKKVDP-AGNPTVSAHPARFSPDDKY-------SRERITILRR 88
YTLK+ P G T AHP RFSP+D Y RE++ I++R
Sbjct: 14 YTLKETCPVCGTKTKIAHPPRFSPEDPYGEYRRRLKREQLGIVKR 58
>sp|Q9V0E3|NOP10_PYRAB Ribosome biogenesis protein Nop10 OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=nop10 PE=1 SV=1
Length = 60
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 52 YTLKKVDP-AGNPTVSAHPARFSPDDKYSRERITILRR-FGLLRTQQ 96
YTLK+ P G T AHP RFSP+D Y R + R G+ R ++
Sbjct: 14 YTLKETCPVCGEKTKVAHPPRFSPEDPYGEYRRRLKRELLGIGRKEK 60
>sp|C5A500|NOP10_THEGJ Ribosome biogenesis protein Nop10 OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=nop10 PE=3 SV=1
Length = 59
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 52 YTLKKVDP-AGNPTVSAHPARFSPDDKY 78
YTLK++ P G T AHP RFSP+D Y
Sbjct: 14 YTLKEICPVCGAKTKVAHPPRFSPEDPY 41
>sp|A6UUW5|NOP10_META3 Ribosome biogenesis protein Nop10 OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=nop10 PE=3 SV=1
Length = 51
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 52 YTLKKVDPAGNPTVSAHPARFSPDDKYSRER 82
YTL + G T++ P R+SP DKY + R
Sbjct: 12 YTLNTICQCGEKTITVKPPRYSPTDKYGKYR 42
>sp|Q46C79|NOP10_METBF Ribosome biogenesis protein Nop10 OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=nop10 PE=3 SV=1
Length = 51
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 52 YTLKKVDP-AGNPTVSAHPARFSPDDKYSRER 82
YTL+++ P G S +PARFSP D Y R R
Sbjct: 14 YTLREICPVCGGKPFSPNPARFSPKDPYGRYR 45
>sp|Q5UX23|NOP10_HALMA Ribosome biogenesis protein Nop10 OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=nop10 PE=3 SV=1
Length = 60
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 43 YLGEDGKRVYTLKKVDP-AGNPTVSAHPARFSPDDKYSRERITILRR 88
+ E + VYTL P G V++ PA FSP+D Y R ++ RR
Sbjct: 11 WESEHDRPVYTLDDTCPECGAEAVNSAPAPFSPEDSYGEYRRSLKRR 57
>sp|Q053A4|GCP_LEPBL Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Leptospira borgpetersenii serovar Hardjo-bovis
(strain L550) GN=gcp PE=3 SV=1
Length = 338
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 2 YLSGLPDSVRAHQVDLTGGSDQVYLIEYFPYFPLITMYLMYYLGEDGKRVYTLKKVDPAG 61
+L G+P + L+GG+ VY+++ F L+ + LGE +V L + G
Sbjct: 120 HLEGVPTEFPVLGLLLSGGNSAVYILQEFGRMELVGDTMDDALGEAFDKVAGLLDLPYPG 179
Query: 62 NPTVSAHPARF--SPDDK 77
P + A + +PD+K
Sbjct: 180 GPHIEAKANEYIPTPDEK 197
>sp|Q04RH4|GCP_LEPBJ Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Leptospira borgpetersenii serovar Hardjo-bovis
(strain JB197) GN=gcp PE=3 SV=1
Length = 338
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 2 YLSGLPDSVRAHQVDLTGGSDQVYLIEYFPYFPLITMYLMYYLGEDGKRVYTLKKVDPAG 61
+L G+P + L+GG+ VY+++ F L+ + LGE +V L + G
Sbjct: 120 HLEGVPTEFPVLGLLLSGGNSAVYILQEFGRMELVGDTMDDALGEAFDKVAGLLDLPYPG 179
Query: 62 NPTVSAHPARF--SPDDK 77
P + A + +PD+K
Sbjct: 180 GPHIEAKANEYIPTPDEK 197
>sp|C6A1Z6|NOP10_THESM Ribosome biogenesis protein Nop10 OS=Thermococcus sibiricus
(strain MM 739 / DSM 12597) GN=nop10 PE=3 SV=1
Length = 59
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 52 YTLKKVDP-AGNPTVSAHPARFSPDDKYSRER 82
YTLK+ P G T AHP +FSP+D Y R
Sbjct: 14 YTLKETCPLCGEKTKLAHPPKFSPEDPYGEYR 45
>sp|A3DM90|NOP10_STAMF Ribosome biogenesis protein Nop10 OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=nop10 PE=3 SV=1
Length = 66
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 39 YLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLL 92
+LM G+ + G + HP RFSP+DKY R+ + + G+L
Sbjct: 3 WLMRKCIRCGRYTLNHDRCPYCGGELIVPHPPRFSPEDKYVAYRLEMKIKTGIL 56
>sp|Q50L43|PA24D_MOUSE Cytosolic phospholipase A2 delta OS=Mus musculus GN=Pla2g4d PE=2
SV=3
Length = 825
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 12/56 (21%)
Query: 7 PDSVRAHQVDLTGGSDQVYLIEYFPYFPLITMYLMYYLGEDGKRVYTLKKVDPAGN 62
PD ++A QV+LTG + PYF MY M Y ED R+ L + N
Sbjct: 756 PDELKAGQVNLTGAAS--------PYF----MYNMTYKNEDFDRLLQLSDYNVQNN 799
>sp|O27362|NOP10_METTH Ribosome biogenesis protein Nop10 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=nop10 PE=3 SV=1
Length = 59
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 52 YTLKKVDP-AGNPTVSAHPARFSPDDKYSRERITILR 87
YTLK+V P G T +P +FSP+DKY R + R
Sbjct: 12 YTLKEVCPHCGGRTGVIYPPKFSPEDKYGAYRRKLKR 48
>sp|Q08B53|PRRCB_XENLA Protein PRRC1-B OS=Xenopus laevis GN=prrc1-b PE=2 SV=1
Length = 442
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 61 GNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQPA 98
G ++ P ++ K ++ERI LRR G++ +QPA
Sbjct: 288 GQSNIAPQPVGYAAGLKGAQERIDSLRRTGMIHEKQPA 325
>sp|Q6P870|PRRC1_XENTR Protein PRRC1 OS=Xenopus tropicalis GN=prrc1 PE=2 SV=1
Length = 443
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 61 GNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQPA 98
G ++ P ++ K ++ERI LRR G++ +QPA
Sbjct: 289 GQSNIAPQPVGYAAGLKGAQERIDSLRRSGMIHEKQPA 326
>sp|A6H8J1|PRRCA_XENLA Protein PRRC1-A OS=Xenopus laevis GN=prrc1-a PE=2 SV=1
Length = 442
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 61 GNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQPA 98
G ++ P ++ K ++ERI LRR G++ +QPA
Sbjct: 288 GQSNIAPQPVGYAAGLKGAQERIDSLRRSGMIHEKQPA 325
>sp|Q8TT00|NOP10_METAC Ribosome biogenesis protein Nop10 OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=nop10 PE=3 SV=1
Length = 51
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 52 YTLKKVDP-AGNPTVSAHPARFSPDDKYSRER 82
YTL++ P G T+ A PARFSP D Y + R
Sbjct: 14 YTLREKCPVCGGVTLPAIPARFSPQDPYGKYR 45
>sp|Q03NA7|ADDA_LACBA ATP-dependent helicase/nuclease subunit A OS=Lactobacillus brevis
(strain ATCC 367 / JCM 1170) GN=addA PE=3 SV=1
Length = 1262
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 14 QVDLTGGSDQVYLIEYFPYFPLITMYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFS 73
++D TG + + Y+P T L+ YL ED + AG+ A A F
Sbjct: 497 EIDYTGAAQLKFGASYYPDTVTSTAELLVYLTEDAP--------ESAGDADSEAMDATFQ 548
Query: 74 PDDKYSRERITILRRFGLLRTQQ 96
D+K+ E + + ++ L Q
Sbjct: 549 VDNKHQGEVLMVGQKIQQLIADQ 571
>sp|Q91090|PON2_MELGA Serum paraoxonase/arylesterase 2 OS=Meleagris gallopavo GN=PON2
PE=2 SV=1
Length = 354
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 20 GSDQVYLIEYFPYFPLITMYLMYYLGEDGKRV--YTLKKVDPAGNPTVSAHPARFSPDDK 77
G D Y ++ I M+L YLG V Y+ K+V SA+ SPD K
Sbjct: 173 GPDSFYATNDHYFYDFILMFLEMYLGLTWSNVVYYSPKEVKEVAAGFYSANGINISPDKK 232
Query: 78 Y 78
Y
Sbjct: 233 Y 233
>sp|Q90952|PON2_CHICK Serum paraoxonase/arylesterase 2 OS=Gallus gallus GN=PON2 PE=2 SV=1
Length = 354
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 20 GSDQVYLIEYFPYFPLITMYLMYYLGEDGKRV--YTLKKVDPAGNPTVSAHPARFSPDDK 77
G D Y ++ I M+L YLG V Y+ K+V SA+ SPD K
Sbjct: 173 GPDSFYATNDHYFYDFILMFLEMYLGLTWSNVVYYSPKEVKEVAAGFYSANGINISPDKK 232
Query: 78 Y 78
Y
Sbjct: 233 Y 233
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,003,283
Number of Sequences: 539616
Number of extensions: 1673801
Number of successful extensions: 2864
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2824
Number of HSP's gapped (non-prelim): 51
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)