Query psy7862
Match_columns 101
No_of_seqs 101 out of 244
Neff 2.6
Searched_HMMs 29240
Date Fri Aug 16 20:44:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y2y_A Ribosome biogenesis pro 100.0 6.7E-39 2.3E-43 207.8 -2.2 58 38-95 1-58 (58)
2 2aus_D NOP10, ribosome biogene 99.9 1.6E-26 5.6E-31 149.7 5.1 50 46-95 8-58 (60)
3 2apo_B Ribosome biogenesis pro 99.9 3.9E-26 1.3E-30 147.7 4.6 48 46-93 9-57 (60)
4 2x3h_A K5 lyase, K5A lyase; ba 19.6 28 0.00094 29.7 0.5 18 7-24 152-169 (542)
5 4b6w_A Tubulin-specific chaper 14.6 33 0.0011 21.5 -0.2 28 70-97 19-46 (86)
6 2kj6_A Tubulin folding cofacto 14.0 92 0.0031 20.0 1.9 48 47-96 10-57 (97)
7 3aap_A Ectonucleoside triphosp 14.0 2.2E+02 0.0076 21.9 4.4 17 12-28 142-158 (353)
8 3j20_Y 30S ribosomal protein S 13.8 37 0.0013 20.0 -0.1 26 40-66 5-31 (50)
9 2ije_S Guanine nucleotide-rele 11.2 54 0.0019 23.7 0.1 16 72-87 133-148 (240)
10 2l3b_A Conserved protein found 11.1 1.5E+02 0.005 21.4 2.3 42 37-78 29-74 (130)
No 1
>1y2y_A Ribosome biogenesis protein NOP10; box H/ACA snoRNA,snoRNP, pseudouridine, biosynthetic protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.16.1 PDB: 3u28_B 3uai_B 2aqa_A
Probab=100.00 E-value=6.7e-39 Score=207.80 Aligned_cols=58 Identities=69% Similarity=1.083 Sum_probs=57.5
Q ss_pred eEEEEEeCCCCceeeeecccCCCCCCccccCCCCCCCCCccHHHHHHHHHHhCCCCCC
Q psy7862 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQ 95 (101)
Q Consensus 38 M~L~yyl~e~gc~vYTLk~~CP~G~~T~saHPARFSPdDKYskYR~~LKkr~glLptq 95 (101)
||||||+|++||++|||+++||.|++|.+|||||||||||||+|||+||||||+||||
T Consensus 1 m~l~y~~~~~g~~~YTLk~~cP~G~~T~sahPaRFSPdDky~~yR~~lKkrfgll~tq 58 (58)
T 1y2y_A 1 MHLMYTLGPDGKRIYTLKKVTESGEITKSAHPARFSPDDKYSRQRVTLKKRFGLVPGQ 58 (58)
T ss_dssp CCCBCCCSSSSSCCCBCCSTTCSSSSSSSSCSSSSCSCTTCSCTTSTTSSSCCCCCCC
T ss_pred CeEEEEeCCCCCeeeeccccCCCCCccccCCCCCCCCCcccHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999998
No 2
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=99.93 E-value=1.6e-26 Score=149.72 Aligned_cols=50 Identities=36% Similarity=0.494 Sum_probs=46.2
Q ss_pred CCCceeeeecccCCC-CCCccccCCCCCCCCCccHHHHHHHHHHhCCCCCC
Q psy7862 46 EDGKRVYTLKKVDPA-GNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQ 95 (101)
Q Consensus 46 e~gc~vYTLk~~CP~-G~~T~saHPARFSPdDKYskYR~~LKkr~glLptq 95 (101)
...|++|||++.||. |++|.+|||||||||||||+|||+||+|||.+++.
T Consensus 8 C~~Cg~YTLk~~CP~CG~~t~~ahParfSP~Dky~~yR~~lKk~~~~~~~~ 58 (60)
T 2aus_D 8 CPKCGRYTLKETCPVCGEKTKVAHPPRFSPEDPYGEYRRRLKRELLGIGRK 58 (60)
T ss_dssp CTTTCCEESSSBCTTTCSBCEESSCCCCCSCCTTHHHHHHHHHHHTTCC--
T ss_pred CCCCCCEEccccCcCCCCccCCCCCCCCCCCCchHHHHHHHHHHhcccccC
Confidence 678999999999994 99999999999999999999999999999999864
No 3
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=99.92 E-value=3.9e-26 Score=147.67 Aligned_cols=48 Identities=29% Similarity=0.457 Sum_probs=45.9
Q ss_pred CCCceeeeecccCCC-CCCccccCCCCCCCCCccHHHHHHHHHHhCCCC
Q psy7862 46 EDGKRVYTLKKVDPA-GNPTVSAHPARFSPDDKYSRERITILRRFGLLR 93 (101)
Q Consensus 46 e~gc~vYTLk~~CP~-G~~T~saHPARFSPdDKYskYR~~LKkr~glLp 93 (101)
...|++|||++.||. |++|.+|||||||||||||+|||+||+|||+..
T Consensus 9 C~~CgvYTLk~~CP~CG~~T~~~hParfSp~Dky~~yR~~~kk~~~~~~ 57 (60)
T 2apo_B 9 CPKCGLYTLKEICPKCGEKTVIPKPPKFSLEDRWGKYRRMLKRALKNKN 57 (60)
T ss_dssp CTTTCCEESSSBCSSSCSBCBCCCCCCCCTTCTTHHHHHHHHHHHHTCC
T ss_pred CCCCCCEeccccCcCCCCcCCCCCCCCCCCCcchHHHHHHHHHHhcccc
Confidence 678999999999997 999999999999999999999999999999875
No 4
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5}
Probab=19.60 E-value=28 Score=29.68 Aligned_cols=18 Identities=44% Similarity=0.728 Sum_probs=15.9
Q ss_pred CcccceeeeeccCCCcce
Q psy7862 7 PDSVRAHQVDLTGGSDQV 24 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~ 24 (101)
-|++..|||.+.||+|-.
T Consensus 152 ~ds~qg~qvs~~gg~dvs 169 (542)
T 2x3h_A 152 TDTTQGQQVSLAGGSDVT 169 (542)
T ss_dssp STTCBCCSEEEESCEEEE
T ss_pred CccccceEEEecCCCcce
Confidence 589999999999999853
No 5
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=14.60 E-value=33 Score=21.49 Aligned_cols=28 Identities=7% Similarity=0.131 Sum_probs=24.0
Q ss_pred CCCCCCCccHHHHHHHHHHhCCCCCCCC
Q psy7862 70 ARFSPDDKYSRERITILRRFGLLRTQQP 97 (101)
Q Consensus 70 ARFSPdDKYskYR~~LKkr~glLptq~~ 97 (101)
-||+|.+.-+.-..+|...+|+-|.||-
T Consensus 19 ~r~~~s~TI~~lK~ki~~~~Gip~~~Qr 46 (86)
T 4b6w_A 19 KRYGLAQTIESIKENVFTHFATPPEYMQ 46 (86)
T ss_dssp EEEETTSBHHHHHHHHHTTSCCCGGGEE
T ss_pred EEcCccCcHHHHHHHHHHHHCCCHHHEE
Confidence 5799999999999999999999877763
No 6
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=14.03 E-value=92 Score=19.97 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=33.1
Q ss_pred CCceeeeecccCCCCCCccccCCCCCCCCCccHHHHHHHHHHhCCCCCCC
Q psy7862 47 DGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQ 96 (101)
Q Consensus 47 ~gc~vYTLk~~CP~G~~T~saHPARFSPdDKYskYR~~LKkr~glLptq~ 96 (101)
+|...-+|.=+|..... ...--||+|++.-+.-..+|-..+|+-|.||
T Consensus 10 ~~~~~v~l~It~s~~~~--~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~Q 57 (97)
T 2kj6_A 10 HGDDSVHLHITHANLKS--FSADARFSPQMSVEAVKEKLWKKCGTSVNSM 57 (97)
T ss_dssp CCCCCEEEEEEETTSSC--CCEEEEECTTCCHHHHHHHHHHHHCCCTTSE
T ss_pred CCCceEEEEEEECCCCc--eEEEEEeCCCChHHHHHHHHHHHHCcCHHHe
Confidence 45555566555543211 1122589999999999999999999887775
No 7
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=14.00 E-value=2.2e+02 Score=21.92 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.3
Q ss_pred eeeeeccCCCcceEEee
Q psy7862 12 AHQVDLTGGSDQVYLIE 28 (101)
Q Consensus 12 ~~~~~~~~~~~~~~~~~ 28 (101)
.--+|+-|||-|+-++.
T Consensus 142 ~~v~DiGGGStei~~~~ 158 (353)
T 3aap_A 142 VGVMDMGGASVQIVFPM 158 (353)
T ss_dssp EEEEEECSSEEEEEEEC
T ss_pred EEEEEeCCCceEEEEec
Confidence 56799999999988763
No 8
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=13.83 E-value=37 Score=20.05 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=15.9
Q ss_pred EEEEeCCCCceeeeecccCCC-CCCccc
Q psy7862 40 LMYYLGEDGKRVYTLKKVDPA-GNPTVS 66 (101)
Q Consensus 40 L~yyl~e~gc~vYTLk~~CP~-G~~T~s 66 (101)
|.||--++| .+=.+.+.||. |.....
T Consensus 5 l~~y~v~~~-kv~~~~k~CP~CG~~~fm 31 (50)
T 3j20_Y 5 WKLYEIKDG-KVIRKNKFCPRCGPGVFM 31 (50)
T ss_dssp CCCCEECSS-CEECSSEECSSSCSSCEE
T ss_pred eeEEEEECC-EEEEecccCCCCCCceEE
Confidence 345444444 56667888997 765443
No 9
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus}
Probab=11.24 E-value=54 Score=23.69 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=14.1
Q ss_pred CCCCCccHHHHHHHHH
Q psy7862 72 FSPDDKYSRERITILR 87 (101)
Q Consensus 72 FSPdDKYskYR~~LKk 87 (101)
+||++.|..||..+++
T Consensus 133 ~~~~~n~~~yR~~l~~ 148 (240)
T 2ije_S 133 VSSDGRFKNLRESLRN 148 (240)
T ss_dssp TCCHHHHHHHHHHHHT
T ss_pred HCccchHHHHHHHHHh
Confidence 6899999999999875
No 10
>2l3b_A Conserved protein found in conjugate transposon; beta, structural genomics, PSI-biology; NMR {Bacteroides thetaiotaomicron}
Probab=11.13 E-value=1.5e+02 Score=21.39 Aligned_cols=42 Identities=21% Similarity=0.363 Sum_probs=32.3
Q ss_pred ceEEEEEeCCCCc---eeeeecccCCC-CCCccccCCCCCCCCCcc
Q psy7862 37 TMYLMYYLGEDGK---RVYTLKKVDPA-GNPTVSAHPARFSPDDKY 78 (101)
Q Consensus 37 ~M~L~yyl~e~gc---~vYTLk~~CP~-G~~T~saHPARFSPdDKY 78 (101)
+.=+++.|...|. -+||++-.=|+ .|...-..=.+|=|.|.|
T Consensus 29 TvEIR~~L~reG~f~~t~Y~IRYFQ~dGkG~L~~~dg~~l~PND~Y 74 (130)
T 2l3b_A 29 TAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLKMSDGTVLLPNDLY 74 (130)
T ss_dssp EEEEEEEEECSSCCSSCCCEEEEECSSCCCEEEETTSCEECTTSCE
T ss_pred eEEEEEEEecCceecccEEEEEEEeecCCeeEEeCCCCEecCCccc
Confidence 3457899999887 78999999888 455555666778888877
Done!