RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7862
(101 letters)
>1y2y_A Ribosome biogenesis protein NOP10; box H/ACA snoRNA,snoRNP,
pseudouridine, biosynthetic protein; NMR {Saccharomyces
cerevisiae} SCOP: g.41.16.1 PDB: 3u28_B 3uai_B 2aqa_A
Length = 58
Score = 103 bits (257), Expect = 6e-31
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 38 MYLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQ 95
M+LMY LG DGKR+YTLKKV +G T SAHPARFSPDDKYSR+R+T+ +RFGL+ Q
Sbjct: 1 MHLMYTLGPDGKRIYTLKKVTESGEITKSAHPARFSPDDKYSRQRVTLKKRFGLVPGQ 58
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural
protein, isomerase-structural protein; 2.10A
{Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B
3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B*
3hjy_B 3mqk_B
Length = 60
Score = 64.8 bits (158), Expect = 7e-16
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 50 RVYTLKKVDPA-GNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQ 96
YTLK+ P G T AHP RFSP+D Y R + R + ++
Sbjct: 12 GRYTLKETCPVCGEKTKVAHPPRFSPEDPYGEYRRRLKRELLGIGRKE 59
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box
H/ACA, snoRNP, pseudouridine synthase, RNA
modification; 1.95A {Methanocaldococcus jannaschii}
SCOP: g.41.16.1 PDB: 2aqc_A
Length = 60
Score = 61.0 bits (148), Expect = 2e-14
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 50 RVYTLKKVDPA-GNPTVSAHPARFSPDDKYSRERITILRRFG 90
+YTLK++ P G TV P +FS +D++ + R + R
Sbjct: 13 GLYTLKEICPKCGEKTVIPKPPKFSLEDRWGKYRRMLKRALK 54
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix,
anti-parrallel beta sheet, double straded anti-parallel
beta helix, metal binding protein; 2.00A {Mus musculus}
Length = 404
Score = 26.5 bits (58), Expect = 1.7
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 47 DGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRER 82
+GK DPAGN + + D + ER
Sbjct: 360 EGKMKAHFIMNDPAGNSYL-QNVYAPEDDPEMKVER 394
Score = 25.0 bits (54), Expect = 5.2
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 47 DGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRER 82
+TL DP+GN V +P D+
Sbjct: 151 QMASPFTLVIDDPSGNSFV-ENPHAPQKDNALVITY 185
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 2.5
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 17/95 (17%)
Query: 22 DQVYLIEYFPYFPLITMY-LMYY------LGED-GKRVYTLKKVDPAGNPTVSAHPARFS 73
D+ YL+ PLI + L +Y LG G+ LK V+A +
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 74 PD----DKYSRERITILRRFGL-LRTQQ--PASAM 101
R+ IT+L F + +R + P +++
Sbjct: 287 DSWESFFVSVRKAITVL--FFIGVRCYEAYPNTSL 319
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 25.8 bits (57), Expect = 2.9
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 42 YYLGEDGKRVYTLKKVDPAGNPTVSAH 68
Y+ E + ++ DP+G+ V+A
Sbjct: 253 YFTTERFLPLLRMRLDDPSGSNYVTAM 279
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB:
2yb4_A
Length = 292
Score = 24.9 bits (55), Expect = 6.1
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 60 AGNPTVSAHPARFSPDDKYSRERITILRRFGL 91
AG V AHP R+ I + G
Sbjct: 183 AGGMAVIAHPGRYDMGRTLIERLILDFQAAGG 214
>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A
{Leuconostoc mesenteroides} PDB: 3tto_A*
Length = 1108
Score = 25.0 bits (54), Expect = 6.7
Identities = 2/17 (11%), Positives = 8/17 (47%)
Query: 42 YYLGEDGKRVYTLKKVD 58
Y ++ + L+ ++
Sbjct: 93 VYRDQNNTILKGLQNIN 109
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 24.8 bits (55), Expect = 6.9
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 5/36 (13%)
Query: 48 GKRVYTLKKVDPAGNPTVSAHP-----ARFSPDDKY 78
G VYT+ + H A+ SP Y
Sbjct: 38 GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYY 73
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding;
HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP:
a.4.13.2
Length = 243
Score = 24.4 bits (54), Expect = 8.7
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 80 RERITILRRFGLLRTQ 95
RER+ + R+ +TQ
Sbjct: 202 RERLIVYLRYYKDQTQ 217
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II,
membrane protein, heme protein, iron sulfur PROT
cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL;
1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A*
2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A*
3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A*
3aea_A* 3aeb_A* 3aec_A* ...
Length = 621
Score = 24.2 bits (53), Expect = 9.2
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 7/29 (24%)
Query: 7 PDSVRAHQVDLTGGSDQVYL-----IEYF 30
D+ R H D GSD +L I Y
Sbjct: 73 DDNWRWHFYDTVKGSD--WLGDQDAIHYM 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.421
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,643,337
Number of extensions: 90010
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 18
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)