RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7862
         (101 letters)



>d2aqaa1 g.41.16.1 (A:2-58) H/aca ribonucleoprotein complex
          subunit 3 {Baker's yeast (Saccharomyces cerevisiae)
          [TaxId: 4932]}
          Length = 57

 Score =  100 bits (250), Expect = 3e-30
 Identities = 39/57 (68%), Positives = 47/57 (82%)

Query: 39 YLMYYLGEDGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQ 95
          +LMY LG DGKR+YTLKKV  +G  T SAHPARFSPDDKYSR+R+T+ +RFGL+  Q
Sbjct: 1  HLMYTLGPDGKRIYTLKKVTESGEITKSAHPARFSPDDKYSRQRVTLKKRFGLVPGQ 57


>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10
          {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 55

 Score = 61.7 bits (150), Expect = 4e-15
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 50 RVYTLKKVDPA-GNPTVSAHPARFSPDDKYSRERITILRRF 89
           +YTLK++ P  G  TV   P +FS +D++ + R  + R  
Sbjct: 11 GLYTLKEICPKCGEKTVIPKPPKFSLEDRWGKYRRMLKRAL 51


>d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10
          {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 52

 Score = 60.1 bits (146), Expect = 1e-14
 Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 50 RVYTLKKVDPA-GNPTVSAHPARFSPDDKYSRERITILRRF 89
            YTLK+V P  G  T  AHP RFSP+D Y   R    R  
Sbjct: 9  GRYTLKEVCPVCGEKTKVAHPPRFSPEDPYGEYRRRWKREV 49


>d1s6la2 d.357.1.2 (A:81-212) Alkylmercury lyase MerB {Escherichia
           coli [TaxId: 562]}
          Length = 132

 Score = 25.2 bits (55), Expect = 1.3
 Identities = 10/55 (18%), Positives = 21/55 (38%)

Query: 47  DGKRVYTLKKVDPAGNPTVSAHPARFSPDDKYSRERITILRRFGLLRTQQPASAM 101
           D +R+Y    +D    P +    AR S     +   +++      ++  +PA   
Sbjct: 8   DDRRLYAWCALDTLIFPALIGRTARVSSHCAATGAPVSLTVSPSEIQAVEPAGMA 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 399,881
Number of extensions: 17659
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 5
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)