Query psy7864
Match_columns 201
No_of_seqs 133 out of 166
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 20:47:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12569 NARP1: NMDA receptor- 99.9 7.9E-28 1.7E-32 227.7 11.0 111 1-116 406-517 (517)
2 KOG1156|consensus 99.9 1.3E-24 2.8E-29 207.6 9.3 119 1-131 581-700 (700)
3 KOG1156|consensus 98.4 7.7E-07 1.7E-11 86.6 8.0 126 65-197 228-360 (700)
4 PF14559 TPR_19: Tetratricopep 97.4 0.0005 1.1E-08 46.6 5.6 60 72-131 7-66 (68)
5 PF13432 TPR_16: Tetratricopep 97.3 0.0006 1.3E-08 46.1 5.3 53 72-124 13-65 (65)
6 cd00189 TPR Tetratricopeptide 96.5 0.027 5.8E-07 36.7 7.9 68 70-137 14-81 (100)
7 PF13371 TPR_9: Tetratricopept 96.4 0.016 3.5E-07 39.5 6.5 57 71-127 10-66 (73)
8 PRK15359 type III secretion sy 96.4 0.018 3.9E-07 45.6 7.5 75 62-137 31-105 (144)
9 PF13429 TPR_15: Tetratricopep 96.3 0.016 3.5E-07 49.7 7.5 128 71-199 125-264 (280)
10 PRK10370 formate-dependent nit 96.3 0.12 2.5E-06 43.3 12.4 85 71-161 54-139 (198)
11 PF13414 TPR_11: TPR repeat; P 96.2 0.02 4.4E-07 38.7 6.1 50 72-121 19-69 (69)
12 COG4783 Putative Zn-dependent 96.0 0.16 3.4E-06 48.8 12.9 118 71-198 321-440 (484)
13 PLN03088 SGT1, suppressor of 95.5 0.068 1.5E-06 48.6 8.2 68 70-137 50-117 (356)
14 PF13428 TPR_14: Tetratricopep 95.5 0.029 6.2E-07 35.7 4.1 42 91-132 2-43 (44)
15 PRK10049 pgaA outer membrane p 95.2 0.11 2.5E-06 51.6 9.3 103 70-180 373-475 (765)
16 PRK10747 putative protoheme IX 94.9 0.72 1.6E-05 42.3 13.0 68 70-137 132-200 (398)
17 PRK15363 pathogenicity island 94.8 0.16 3.4E-06 42.1 7.7 60 69-128 48-107 (157)
18 PRK14574 hmsH outer membrane p 94.8 0.2 4.3E-06 51.0 9.9 97 70-175 430-527 (822)
19 COG4235 Cytochrome c biogenesi 94.5 0.89 1.9E-05 41.1 12.4 112 79-195 145-273 (287)
20 TIGR02552 LcrH_SycD type III s 94.4 0.23 5.1E-06 37.3 7.4 73 62-135 24-96 (135)
21 PLN03088 SGT1, suppressor of 94.3 0.2 4.4E-06 45.6 8.0 64 71-134 17-80 (356)
22 TIGR02795 tol_pal_ybgF tol-pal 94.3 0.85 1.8E-05 32.8 9.9 64 62-126 9-75 (119)
23 TIGR02552 LcrH_SycD type III s 94.2 0.32 7E-06 36.5 7.7 67 62-129 58-124 (135)
24 PF13371 TPR_9: Tetratricopept 94.0 0.13 2.9E-06 34.9 4.8 40 97-136 2-41 (73)
25 PRK11447 cellulose synthase su 93.5 1.4 2.9E-05 46.0 13.2 57 72-128 44-100 (1157)
26 PRK15179 Vi polysaccharide bio 93.4 0.75 1.6E-05 46.0 10.7 69 69-137 99-167 (694)
27 PRK15359 type III secretion sy 93.4 0.55 1.2E-05 37.0 8.0 64 71-134 73-136 (144)
28 TIGR02917 PEP_TPR_lipo putativ 93.3 1.8 3.9E-05 41.0 12.5 65 70-134 173-237 (899)
29 PRK15174 Vi polysaccharide exp 92.9 0.36 7.9E-06 47.4 7.6 68 69-136 89-156 (656)
30 TIGR02521 type_IV_pilW type IV 92.9 3.6 7.7E-05 32.0 12.3 65 70-134 45-109 (234)
31 PF13414 TPR_11: TPR repeat; P 92.9 0.18 3.8E-06 34.0 3.9 47 89-135 2-48 (69)
32 PRK12370 invasion protein regu 92.5 0.44 9.4E-06 45.6 7.4 61 72-132 320-380 (553)
33 PRK09782 bacteriophage N4 rece 92.4 0.65 1.4E-05 48.2 8.8 64 69-133 58-121 (987)
34 PRK12370 invasion protein regu 92.0 2.5 5.4E-05 40.5 11.9 62 66-128 349-410 (553)
35 TIGR02795 tol_pal_ybgF tol-pal 92.0 0.64 1.4E-05 33.4 6.2 69 61-130 45-116 (119)
36 PF07719 TPR_2: Tetratricopept 92.0 0.33 7.1E-06 28.2 3.8 33 91-123 2-34 (34)
37 TIGR02917 PEP_TPR_lipo putativ 91.8 3.3 7.1E-05 39.2 12.3 63 72-134 752-814 (899)
38 TIGR02521 type_IV_pilW type IV 91.8 1.2 2.6E-05 34.7 8.0 57 72-128 115-173 (234)
39 PRK11189 lipoprotein NlpI; Pro 91.4 0.89 1.9E-05 39.9 7.6 53 72-124 114-166 (296)
40 PRK11447 cellulose synthase su 91.3 3.6 7.9E-05 42.9 13.0 65 71-135 366-430 (1157)
41 PRK11189 lipoprotein NlpI; Pro 91.2 1.5 3.3E-05 38.5 8.8 61 70-130 78-138 (296)
42 PRK10747 putative protoheme IX 91.1 2.3 5.1E-05 38.9 10.3 123 71-197 168-342 (398)
43 TIGR00990 3a0801s09 mitochondr 91.0 3.8 8.2E-05 39.5 12.0 61 72-132 347-407 (615)
44 PF12895 Apc3: Anaphase-promot 90.7 0.45 9.8E-06 33.6 4.1 60 72-132 5-66 (84)
45 PF00515 TPR_1: Tetratricopept 90.0 0.45 9.7E-06 27.9 3.1 33 91-123 2-34 (34)
46 TIGR00990 3a0801s09 mitochondr 89.9 5.4 0.00012 38.4 12.1 64 70-133 308-374 (615)
47 PRK10049 pgaA outer membrane p 89.7 1.2 2.6E-05 44.4 7.6 66 69-135 96-161 (765)
48 PRK09782 bacteriophage N4 rece 89.5 4.5 9.8E-05 42.1 11.8 63 71-134 591-653 (987)
49 cd00189 TPR Tetratricopeptide 89.0 1.4 3.1E-05 28.2 5.3 53 70-122 48-100 (100)
50 PRK10370 formate-dependent nit 89.0 1.7 3.7E-05 36.3 6.9 61 69-129 86-149 (198)
51 PRK15174 Vi polysaccharide exp 88.5 1.5 3.3E-05 43.1 7.2 61 74-134 268-328 (656)
52 COG3063 PilF Tfp pilus assembl 87.6 1.8 3.8E-05 38.5 6.3 66 72-137 51-130 (250)
53 PRK10803 tol-pal system protei 87.5 8.7 0.00019 33.8 10.8 67 71-137 158-227 (263)
54 KOG1126|consensus 87.2 0.96 2.1E-05 44.9 4.9 77 60-137 460-536 (638)
55 TIGR03302 OM_YfiO outer membra 86.6 16 0.00035 30.0 11.4 58 70-127 47-107 (235)
56 PRK11788 tetratricopeptide rep 85.2 3.3 7.1E-05 36.5 6.9 54 70-123 194-247 (389)
57 PRK02603 photosystem I assembl 83.4 6.8 0.00015 31.2 7.5 68 69-136 48-118 (172)
58 CHL00033 ycf3 photosystem I as 83.4 7.5 0.00016 30.7 7.7 67 69-135 48-117 (168)
59 PRK10866 outer membrane biogen 83.0 3.8 8.3E-05 35.4 6.3 67 62-129 39-108 (243)
60 PRK10153 DNA-binding transcrip 82.8 3.8 8.2E-05 39.6 6.8 60 69-129 433-492 (517)
61 TIGR00540 hemY_coli hemY prote 82.8 7.7 0.00017 35.5 8.5 68 69-136 131-199 (409)
62 PF13429 TPR_15: Tetratricopep 82.7 3.6 7.8E-05 35.1 6.0 60 75-134 199-258 (280)
63 TIGR00540 hemY_coli hemY prote 82.7 39 0.00084 30.9 13.1 50 70-119 167-216 (409)
64 PRK11788 tetratricopeptide rep 82.7 6.6 0.00014 34.5 7.8 65 69-134 227-292 (389)
65 PF09295 ChAPs: ChAPs (Chs5p-A 82.2 5.1 0.00011 37.6 7.2 50 74-123 218-267 (395)
66 PF13181 TPR_8: Tetratricopept 81.7 2.1 4.6E-05 24.8 3.0 33 91-123 2-34 (34)
67 PF03704 BTAD: Bacterial trans 81.7 4.5 9.8E-05 31.1 5.7 50 88-137 60-109 (146)
68 KOG3060|consensus 81.7 5.9 0.00013 35.8 7.0 67 68-135 133-199 (289)
69 PF12569 NARP1: NMDA receptor- 80.4 5.7 0.00012 38.5 7.0 65 72-136 210-274 (517)
70 PLN02789 farnesyltranstransfer 79.8 9.5 0.00021 34.5 7.9 59 71-129 52-113 (320)
71 TIGR03302 OM_YfiO outer membra 78.8 9.4 0.0002 31.4 7.0 73 62-135 77-160 (235)
72 PRK15331 chaperone protein Sic 78.8 8 0.00017 32.3 6.5 65 70-134 51-119 (165)
73 PLN02789 farnesyltranstransfer 77.9 8.2 0.00018 35.0 6.9 51 73-123 125-175 (320)
74 PF09295 ChAPs: ChAPs (Chs5p-A 77.6 3.7 8E-05 38.5 4.7 69 65-134 244-312 (395)
75 PF13432 TPR_16: Tetratricopep 76.3 4.2 9.2E-05 26.8 3.5 39 98-136 5-43 (65)
76 PF12895 Apc3: Anaphase-promot 74.4 6.1 0.00013 27.6 4.1 53 62-116 32-84 (84)
77 KOG1125|consensus 74.3 6 0.00013 39.0 5.2 64 61-125 291-354 (579)
78 cd05804 StaR_like StaR_like; a 72.2 12 0.00026 32.5 6.3 55 72-126 130-184 (355)
79 KOG4626|consensus 72.0 7.5 0.00016 39.4 5.3 66 69-134 129-194 (966)
80 PRK10941 hypothetical protein; 70.3 11 0.00023 33.6 5.6 60 97-162 188-261 (269)
81 PRK02603 photosystem I assembl 70.0 13 0.00028 29.6 5.6 54 70-123 86-153 (172)
82 PF13512 TPR_18: Tetratricopep 69.7 13 0.00029 30.2 5.6 68 62-130 17-87 (142)
83 smart00028 TPR Tetratricopepti 68.7 10 0.00022 19.4 3.4 32 92-123 3-34 (34)
84 KOG0553|consensus 68.6 15 0.00032 33.7 6.1 64 73-137 132-196 (304)
85 KOG0543|consensus 68.1 24 0.00052 33.5 7.5 71 69-140 271-341 (397)
86 PRK15363 pathogenicity island 67.6 23 0.00049 29.4 6.6 68 70-137 83-153 (157)
87 PRK14574 hmsH outer membrane p 66.7 17 0.00037 37.3 6.8 62 72-134 118-179 (822)
88 PF14559 TPR_19: Tetratricopep 66.6 12 0.00025 24.7 4.0 36 101-136 2-37 (68)
89 cd05804 StaR_like StaR_like; a 62.9 20 0.00043 31.1 5.7 63 72-134 96-158 (355)
90 COG5010 TadD Flp pilus assembl 60.2 25 0.00055 31.4 5.9 61 71-131 115-175 (257)
91 PF14853 Fis1_TPR_C: Fis1 C-te 59.8 26 0.00057 23.7 4.7 28 100-127 11-38 (53)
92 KOG0624|consensus 59.6 45 0.00099 31.8 7.6 65 73-137 172-236 (504)
93 COG3063 PilF Tfp pilus assembl 59.2 42 0.0009 30.0 7.0 38 100-137 45-82 (250)
94 PF13428 TPR_14: Tetratricopep 58.8 14 0.00031 23.0 3.1 25 72-96 17-41 (44)
95 TIGR00985 3a0801s04tom mitocho 57.6 50 0.0011 27.1 6.8 26 98-123 98-124 (148)
96 cd00280 TRFH Telomeric Repeat 57.4 53 0.0011 28.4 7.1 64 70-137 83-154 (200)
97 PF13525 YfiO: Outer membrane 57.0 50 0.0011 27.2 6.9 67 62-129 12-81 (203)
98 PRK15179 Vi polysaccharide bio 54.8 63 0.0014 32.6 8.3 68 69-136 133-200 (694)
99 PF13374 TPR_10: Tetratricopep 53.8 13 0.00029 21.8 2.3 29 97-125 9-42 (42)
100 KOG2076|consensus 51.5 63 0.0014 33.7 7.7 69 68-136 151-219 (895)
101 KOG2396|consensus 50.8 49 0.0011 32.6 6.6 64 72-135 121-185 (568)
102 KOG4162|consensus 49.5 2.4E+02 0.0053 29.2 11.3 64 74-137 668-731 (799)
103 PF04733 Coatomer_E: Coatomer 49.4 13 0.00028 33.1 2.3 54 68-126 114-167 (290)
104 PF06552 TOM20_plant: Plant sp 49.4 72 0.0016 27.3 6.7 60 70-129 49-119 (186)
105 PF14561 TPR_20: Tetratricopep 48.9 1.1E+02 0.0023 22.6 8.5 55 83-137 15-71 (90)
106 CHL00033 ycf3 photosystem I as 47.1 67 0.0014 25.2 5.9 48 69-116 85-139 (168)
107 KOG4648|consensus 46.8 23 0.00049 33.8 3.6 32 99-130 106-137 (536)
108 KOG0495|consensus 46.6 2.7E+02 0.0057 28.9 11.0 118 68-198 389-510 (913)
109 PF03704 BTAD: Bacterial trans 46.0 70 0.0015 24.4 5.8 47 70-116 76-122 (146)
110 KOG2076|consensus 44.5 89 0.0019 32.6 7.5 67 70-136 428-495 (895)
111 COG2912 Uncharacterized conser 43.9 58 0.0013 29.3 5.5 45 95-139 186-244 (269)
112 PF04733 Coatomer_E: Coatomer 41.9 79 0.0017 28.1 6.2 85 68-159 179-263 (290)
113 KOG0553|consensus 40.1 56 0.0012 29.9 4.9 62 62-124 88-149 (304)
114 PF13424 TPR_12: Tetratricopep 39.9 65 0.0014 21.7 4.3 47 90-136 5-55 (78)
115 PLN03098 LPA1 LOW PSII ACCUMUL 39.8 68 0.0015 31.0 5.7 50 70-119 89-141 (453)
116 KOG1127|consensus 37.6 1.3E+02 0.0027 32.4 7.4 53 71-123 577-629 (1238)
117 PF13424 TPR_12: Tetratricopep 35.9 65 0.0014 21.7 3.8 49 71-119 27-75 (78)
118 KOG1129|consensus 35.8 1.7E+02 0.0036 27.9 7.4 90 61-156 229-318 (478)
119 PF07035 Mic1: Colon cancer-as 35.5 70 0.0015 26.6 4.5 32 89-120 87-119 (167)
120 PLN03077 Protein ECB2; Provisi 32.4 1.4E+02 0.003 30.1 6.8 32 104-135 671-702 (857)
121 PF13431 TPR_17: Tetratricopep 31.7 58 0.0013 19.4 2.6 23 113-135 2-24 (34)
122 PLN03081 pentatricopeptide (PP 31.5 1.4E+02 0.003 29.3 6.5 64 71-136 477-540 (697)
123 COG5010 TadD Flp pilus assembl 31.3 88 0.0019 28.1 4.6 55 73-127 83-137 (257)
124 KOG0624|consensus 31.2 1.5E+02 0.0033 28.4 6.4 65 69-133 320-384 (504)
125 KOG3824|consensus 31.1 90 0.0019 29.5 4.8 54 71-124 131-184 (472)
126 PF13174 TPR_6: Tetratricopept 30.6 1E+02 0.0022 16.9 3.6 32 92-123 2-33 (33)
127 PF08572 PRP3: pre-mRNA proces 29.9 59 0.0013 28.3 3.3 16 2-17 141-156 (223)
128 KOG1173|consensus 29.5 1.6E+02 0.0035 29.5 6.4 61 70-130 469-529 (611)
129 COG1729 Uncharacterized protei 28.5 4.4E+02 0.0094 23.7 9.0 75 65-139 151-227 (262)
130 PF12487 DUF3703: Protein of u 27.2 1.4E+02 0.003 23.5 4.6 41 90-130 9-49 (112)
131 PF09976 TPR_21: Tetratricopep 25.8 3E+02 0.0066 21.0 8.5 64 73-136 28-94 (145)
132 PLN03098 LPA1 LOW PSII ACCUMUL 25.8 1.6E+02 0.0035 28.5 5.7 41 86-126 71-111 (453)
133 KOG2002|consensus 25.7 3.4E+02 0.0074 28.9 8.2 76 72-155 146-236 (1018)
134 KOG4626|consensus 25.1 4.8E+02 0.01 27.1 8.9 52 71-122 369-420 (966)
135 KOG1174|consensus 24.8 2.6E+02 0.0056 27.4 6.8 65 72-137 420-484 (564)
136 PF07340 Herpes_IE1: Cytomegal 24.6 82 0.0018 29.8 3.4 22 64-85 22-43 (392)
137 PF08424 NRDE-2: NRDE-2, neces 24.1 2.6E+02 0.0056 25.0 6.5 55 83-137 12-78 (321)
138 KOG0547|consensus 24.0 2E+02 0.0043 28.6 5.9 60 74-133 344-405 (606)
139 PRK15331 chaperone protein Sic 23.9 2.8E+02 0.0061 23.1 6.2 66 72-138 87-152 (165)
140 PF05186 Dpy-30: Dpy-30 motif; 23.6 22 0.00047 23.0 -0.4 33 148-180 7-41 (42)
141 KOG4234|consensus 23.2 2.7E+02 0.0059 24.8 6.1 69 70-138 148-216 (271)
142 cd07634 BAR_GAP10-like The Bin 22.9 3.4E+02 0.0074 23.5 6.7 69 69-140 8-79 (207)
143 KOG1126|consensus 22.2 1.8E+02 0.004 29.3 5.4 56 70-125 571-626 (638)
144 KOG2003|consensus 21.9 3.4E+02 0.0073 27.1 7.0 64 71-137 505-571 (840)
145 PF05843 Suf: Suppressor of fo 21.8 4E+02 0.0087 23.2 7.1 98 72-177 17-115 (280)
146 COG5191 Uncharacterized conser 20.2 1.4E+02 0.0031 28.2 4.0 60 73-134 124-186 (435)
147 KOG4162|consensus 20.2 2E+02 0.0044 29.7 5.3 55 72-126 736-790 (799)
148 COG2956 Predicted N-acetylgluc 20.1 5.8E+02 0.013 24.2 7.9 123 68-192 192-326 (389)
No 1
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.95 E-value=7.9e-28 Score=227.73 Aligned_cols=111 Identities=48% Similarity=0.698 Sum_probs=91.6
Q ss_pred CCCHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCCCCCCCCCCcchhhccccchHHHHHHhH
Q psy7864 1 NLLPSERKKLLNKQKKAKRK-ELEKANAIAAAQEKREQHNKARQQTNNQDNDTDTPQQDELIPDKLAKTEEPLEQAVKFL 79 (201)
Q Consensus 1 ~ls~~E~KKlr~Kqrka~kK-~~e~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~p~~~d~~GekL~~~~dPLeeA~KfL 79 (201)
+||++|.||+++|+||+++| +.+++++ ++.++.+++.+++++.. .+.+.+.|+||+|++|++|+|||++|+|||
T Consensus 406 ~~~~~e~Kk~~kK~kK~~~k~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~D~Dp~GekL~~t~dPLe~A~kfl 480 (517)
T PF12569_consen 406 NMSAAERKKAKKKAKKAAKKAKKEEAEK-AAKKEPKKQQNKSKKKE----KVEPKKKDDDPLGEKLLKTEDPLEEAMKFL 480 (517)
T ss_pred cCChHHHHHHHHHHHHHHHHHhHHHHHH-HHhhhhhhhhccccccc----cccCCcCCCCccHHHHhcCCcHHHHHHHHH
Confidence 58999999999999999888 6666655 43333323222222222 345677789999999999999999999999
Q ss_pred HHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHH
Q psy7864 80 SPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRA 116 (201)
Q Consensus 80 ~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a 116 (201)
+||++++|++++||+++||||+|+||||||||||++|
T Consensus 481 ~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~kA 517 (517)
T PF12569_consen 481 KPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKKA 517 (517)
T ss_pred HHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHhC
Confidence 9999999999999999999999999999999999986
No 2
>KOG1156|consensus
Probab=99.91 E-value=1.3e-24 Score=207.61 Aligned_cols=119 Identities=34% Similarity=0.539 Sum_probs=100.6
Q ss_pred CCCHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCCCCCCCCCCcchhhccccchHHHHHHhH
Q psy7864 1 NLLPSERKKLLNKQKKAKRK-ELEKANAIAAAQEKREQHNKARQQTNNQDNDTDTPQQDELIPDKLAKTEEPLEQAVKFL 79 (201)
Q Consensus 1 ~ls~~E~KKlr~Kqrka~kK-~~e~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~p~~~d~~GekL~~~~dPLeeA~KfL 79 (201)
+|| +|+||+++|||++.+| +.|++.+ +++++++.++++..+ .+| |+||+|+||+.|+|||++|.+|+
T Consensus 581 ~ms-~e~kk~~~k~rk~~kk~~~e~~~~-~~~~~~~~~s~~~~~---------~~~-d~~~~gekL~~t~~Pl~ea~kf~ 648 (700)
T KOG1156|consen 581 KMS-DEEKKIKKKQRKAKKKAKKEAKKK-KDKKKKEAKSQSGKP---------VDI-DEDPFGEKLLKTEDPLEEARKFL 648 (700)
T ss_pred hcc-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhccccCCC---------CCC-CCcchhhhHhhcCChHHHHHHHH
Confidence 588 9999999999999999 5555554 444444443332222 122 36799999999999999999999
Q ss_pred HHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHH
Q psy7864 80 SPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLI 131 (201)
Q Consensus 80 ~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~v 131 (201)
.||+.+++++++||+++||||.|+||++||++||+++..|++.||.+|.|++
T Consensus 649 ~~l~~~~~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~~~~~~~~l~~s~~ 700 (700)
T KOG1156|consen 649 PNLQHKGKEKGETYILSFELYYRKGKFLLALACLNNAEGIHGTHPSLHTSML 700 (700)
T ss_pred HHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhccC
Confidence 9999999999999999999999999999999999999999999999999864
No 3
>KOG1156|consensus
Probab=98.40 E-value=7.7e-07 Score=86.55 Aligned_cols=126 Identities=21% Similarity=0.131 Sum_probs=108.4
Q ss_pred hccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhCCC
Q psy7864 65 LAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFIEQMKGAE 144 (201)
Q Consensus 65 L~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v~~~~~~~ 144 (201)
|+-.-.++|+|.++..+|+.-.||+++.|...+..+. |++.|+++|+++.++..+.++.|.|..||-..+....+
T Consensus 228 l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lg---k~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~ee-- 302 (700)
T KOG1156|consen 228 LLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALG---KIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEE-- 302 (700)
T ss_pred HHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHH---HHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcch--
Confidence 4334568999999999999999999999999999994 99999999999999999999999999999988855544
Q ss_pred CCCChHHHHHHhhhhccCCCC--CCHHHHHHH-----HHHHcCCChHHHHHHHHhhhhhc
Q psy7864 145 GDVHPAVWEVLKSGLEPIMGS--KPALELNAS-----YLKENASHLPALLCEVALSSEVG 197 (201)
Q Consensus 145 ~~~~~~V~~Vl~~e~~~l~~~--~~l~~~N~~-----fl~~h~~S~~h~laaa~~~~~l~ 197 (201)
++..|.++|..+|..=.+. .|+.++|+. |+++.-.++.|-+..+.++++++
T Consensus 303 --l~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 303 --LKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred --hHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 8999999999888652222 688889888 99999999999998887777543
No 4
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.39 E-value=0.0005 Score=46.55 Aligned_cols=60 Identities=20% Similarity=0.289 Sum_probs=55.4
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLI 131 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~v 131 (201)
.++|+.+++.+....|++.++++.-.++|++.|.|=.|.+.|.++...+|++|.++.-+.
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 689999999999999999999999999999999999999999999999999999886543
No 5
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.31 E-value=0.0006 Score=46.06 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=49.8
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCc
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNP 124 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P 124 (201)
.++|...++-+....|++.++|..--.||.++|+|-.|+..+.++..++|+||
T Consensus 13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 78999999999999999999999999999999999999999999999999997
No 6
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.50 E-value=0.027 Score=36.72 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=60.0
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
.-+++|+.++.......|+...+|.....+|++.+.+-.|++++..+..+.|.++.++..+.......
T Consensus 14 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 14 GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 45788999999999999998899999999999999999999999999999999998877777665544
No 7
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.39 E-value=0.016 Score=39.51 Aligned_cols=57 Identities=25% Similarity=0.292 Sum_probs=53.1
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLH 127 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh 127 (201)
=.++|++++.-+..+.|+++..|...-.+|++.|+|--|+.++.++.+++|+++...
T Consensus 10 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 10 DYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 368999999999999999999999999999999999999999999999999988765
No 8
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.36 E-value=0.018 Score=45.58 Aligned_cols=75 Identities=12% Similarity=-0.032 Sum_probs=63.2
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
|..+....+ .++|+.++..+....|++.++|..--.|+.+.|.|--|+.+..++..++|++|..|..+-......
T Consensus 31 g~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 31 GYASWQEGD-YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 333433333 678999999999999999999999999999999999999999999999999999887766554433
No 9
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.31 E-value=0.016 Score=49.72 Aligned_cols=128 Identities=24% Similarity=0.324 Sum_probs=79.8
Q ss_pred hHHHHHHhHHHHHHHc--cchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhC------
Q psy7864 71 PLEQAVKFLSPLQLLA--KDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFIEQMKG------ 142 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a--~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v~~~~~------ 142 (201)
=.+++..++.-+.... +++...|...-++|.+.|.+-.|++++.+|..++|+|+.+...++.+.........
T Consensus 125 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~ 204 (280)
T PF13429_consen 125 DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALK 204 (280)
T ss_dssp -HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 3677778888877655 67889999999999999999999999999999999999998777665421100000
Q ss_pred ---CCCCCChHHHHHHhhhhccCCCC-CCHHHHHHHHHHHcCCChHHHHHHHHhhhhhccc
Q psy7864 143 ---AEGDVHPAVWEVLKSGLEPIMGS-KPALELNASYLKENASHLPALLCEVALSSEVGFQ 199 (201)
Q Consensus 143 ---~~~~~~~~V~~Vl~~e~~~l~~~-~~l~~~N~~fl~~h~~S~~h~laaa~~~~~l~~~ 199 (201)
...+-++.++..+......+ |. ..+..+.+..+..+.+++.-++..|.++...|+.
T Consensus 205 ~~~~~~~~~~~~~~~la~~~~~l-g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 205 RLLKAAPDDPDLWDALAAAYLQL-GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp HHHHH-HTSCCHCHHHHHHHHHH-T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred HHHHHCcCHHHHHHHHHHHhccc-ccccccccccccccccccccccccccccccccccccc
Confidence 00001223333333222222 33 3566666777788999999999999999888864
No 10
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.30 E-value=0.12 Score=43.30 Aligned_cols=85 Identities=18% Similarity=0.137 Sum_probs=67.8
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHH-HHHHHhhhCCCCCCCh
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRL-ALFIEQMKGAEGDVHP 149 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf-~~~v~~~~~~~~~~~~ 149 (201)
-.++++..+.-.+..+|++.++|..--.+|++.|.|-.|+.|+.+|.+++|+++.++..+... .... .. ...+
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~---g~---~~~~ 127 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQA---GQ---HMTP 127 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---CC---CCcH
Confidence 448888889999999999999999999999999999999999999999999999999776652 2221 11 1245
Q ss_pred HHHHHHhhhhcc
Q psy7864 150 AVWEVLKSGLEP 161 (201)
Q Consensus 150 ~V~~Vl~~e~~~ 161 (201)
....++.+.+..
T Consensus 128 ~A~~~l~~al~~ 139 (198)
T PRK10370 128 QTREMIDKALAL 139 (198)
T ss_pred HHHHHHHHHHHh
Confidence 666666666654
No 11
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.21 E-value=0.02 Score=38.69 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=41.4
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhcc-chhHHHHHHHHHhhcCC
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQ-KPLLMLQSVKRAWALDP 121 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~-K~LLaLqaL~~a~~id~ 121 (201)
.++|+..+.-...+.|++..+|..---+|++.| +|-.|++++.++.++||
T Consensus 19 ~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 19 YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 677888888888888888888888888888888 68888888888888877
No 12
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.98 E-value=0.16 Score=48.78 Aligned_cols=118 Identities=24% Similarity=0.191 Sum_probs=85.3
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhCCCCCCChH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFIEQMKGAEGDVHPA 150 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v~~~~~~~~~~~~~ 150 (201)
-+++|.+.|.+|...-|+|.--|.+.-|||++.+|+=-|+..++++.+++|+.|+|-...-.-+-.. .. ..+.
T Consensus 321 ~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~---g~----~~ea 393 (484)
T COG4783 321 QYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG---GK----PQEA 393 (484)
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc---CC----hHHH
Confidence 4678999999999999999999999999999999999999999999999999999987766554333 11 1233
Q ss_pred HHHHHhhhhccCCCCCCHHHHH--HHHHHHcCCChHHHHHHHHhhhhhcc
Q psy7864 151 VWEVLKSGLEPIMGSKPALELN--ASYLKENASHLPALLCEVALSSEVGF 198 (201)
Q Consensus 151 V~~Vl~~e~~~l~~~~~l~~~N--~~fl~~h~~S~~h~laaa~~~~~l~~ 198 (201)
|. .|...+...+. ++.-|+ ..--..-.+....++|.|+.+++.|.
T Consensus 394 i~-~L~~~~~~~p~--dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 394 IR-ILNRYLFNDPE--DPNGWDLLAQAYAELGNRAEALLARAEGYALAGR 440 (484)
T ss_pred HH-HHHHHhhcCCC--CchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence 33 33333322222 223222 11113447788899999999988774
No 13
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.49 E-value=0.068 Score=48.64 Aligned_cols=68 Identities=10% Similarity=0.014 Sum_probs=62.2
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
.=+++|+..+.-.+.+.|++..+|.....+|++.|.|-.|+.++.++..++|+++.++..+-+....+
T Consensus 50 g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 50 GNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999998877765555
No 14
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.46 E-value=0.029 Score=35.73 Aligned_cols=42 Identities=29% Similarity=0.369 Sum_probs=38.3
Q ss_pred hHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHH
Q psy7864 91 ETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIR 132 (201)
Q Consensus 91 et~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vr 132 (201)
++|..-..+|.+.|.+=.|.+++.++.+++|+||.++..+.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578888999999999999999999999999999999877654
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.19 E-value=0.11 Score=51.59 Aligned_cols=103 Identities=16% Similarity=0.023 Sum_probs=77.8
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhCCCCCCCh
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFIEQMKGAEGDVHP 149 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v~~~~~~~~~~~~ 149 (201)
+=+++|+..+..+....|++.+.|..--.||.++|.+-.|++++.++..++|+++.++............ -+
T Consensus 373 g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~--------~~ 444 (765)
T PRK10049 373 NDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQE--------WR 444 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC--------HH
Confidence 4479999999999999999999999999999999999999999999999999999988776665443321 12
Q ss_pred HHHHHHhhhhccCCCCCCHHHHHHHHHHHcC
Q psy7864 150 AVWEVLKSGLEPIMGSKPALELNASYLKENA 180 (201)
Q Consensus 150 ~V~~Vl~~e~~~l~~~~~l~~~N~~fl~~h~ 180 (201)
....++...+...+.+.....++..+=..|.
T Consensus 445 ~A~~~~~~ll~~~Pd~~~~~~~~~~~~~~~~ 475 (765)
T PRK10049 445 QMDVLTDDVVAREPQDPGVQRLARARDVHHM 475 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHhccC
Confidence 3333444444444444567777777644333
No 16
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=94.86 E-value=0.72 Score=42.26 Aligned_cols=68 Identities=13% Similarity=0.141 Sum_probs=58.8
Q ss_pred chHHHHHHhHHHHHHHccchH-hHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRI-ETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~i-et~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
.=.+.|..++.-..+..|++. ...++..++|++.|.|-.|++.+.++..++|+||.++..+...+...
T Consensus 132 g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~ 200 (398)
T PRK10747 132 GDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT 200 (398)
T ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 347889999999999899874 55567799999999999999999999999999999998888776543
No 17
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.83 E-value=0.16 Score=42.12 Aligned_cols=60 Identities=10% Similarity=-0.008 Sum_probs=55.1
Q ss_pred cchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHH
Q psy7864 69 EEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHT 128 (201)
Q Consensus 69 ~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~ 128 (201)
..=+++|.++.+-|..+.|.+.+.|.--==|+-++|.|-.|+.|-.+|..++|++|..|-
T Consensus 48 ~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 48 VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 345899999999999999999999997778999999999999999999999999998753
No 18
>PRK14574 hmsH outer membrane protein; Provisional
Probab=94.81 E-value=0.2 Score=50.97 Aligned_cols=97 Identities=21% Similarity=0.205 Sum_probs=75.2
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhCCCCCCCh
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFIEQMKGAEGDVHP 149 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v~~~~~~~~~~~~ 149 (201)
+=|.+|.+.+..|...+|.+.+.++.--+||..||.+--|.+.++.+..++|.+..+......-...+..-.. +..
T Consensus 430 gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~----A~~ 505 (822)
T PRK14574 430 NDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQ----MEL 505 (822)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHH----HHH
Confidence 4499999999999999999999999999999999999999999999999999998887666555544433222 333
Q ss_pred HHHHHHhhhhccCCCC-CCHHHHHHHH
Q psy7864 150 AVWEVLKSGLEPIMGS-KPALELNASY 175 (201)
Q Consensus 150 ~V~~Vl~~e~~~l~~~-~~l~~~N~~f 175 (201)
.+.+|++ .+|+ .+...++..+
T Consensus 506 ~~~~l~~-----~~Pe~~~~~~l~r~~ 527 (822)
T PRK14574 506 LTDDVIS-----RSPEDIPSQELDRQR 527 (822)
T ss_pred HHHHHHh-----hCCCchhHHHHHHHH
Confidence 4444444 4444 5666766655
No 19
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.89 Score=41.11 Aligned_cols=112 Identities=13% Similarity=0.020 Sum_probs=78.0
Q ss_pred HHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhCCCCCCChHHHHHHhhh
Q psy7864 79 LSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFIEQMKGAEGDVHPAVWEVLKSG 158 (201)
Q Consensus 79 L~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v~~~~~~~~~~~~~V~~Vl~~e 158 (201)
|+-=+.-.|+++++|.+-=+||++.+.+=.|+.|..+|.+|+|+||.+---+.+-.-. ++ +..++..+...+.+.
T Consensus 145 Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~-~a----~~~~ta~a~~ll~~a 219 (287)
T COG4235 145 LETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYY-QA----GQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hc----CCcccHHHHHHHHHH
Confidence 4444445899999999999999999999999999999999999999987665553221 11 224677777777766
Q ss_pred hccCCCC-----------------CCHHHHHHHHHHHcCCChHHHHHHHHhhhh
Q psy7864 159 LEPIMGS-----------------KPALELNASYLKENASHLPALLCEVALSSE 195 (201)
Q Consensus 159 ~~~l~~~-----------------~~l~~~N~~fl~~h~~S~~h~laaa~~~~~ 195 (201)
+..=..+ .....+.+.+|.......++|...-+++..
T Consensus 220 l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~ 273 (287)
T COG4235 220 LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIAR 273 (287)
T ss_pred HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 6432222 234445566666667777777665554433
No 20
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=94.44 E-value=0.23 Score=37.27 Aligned_cols=73 Identities=16% Similarity=0.054 Sum_probs=59.9
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
|..+.... -.++|..++.-+....|++...|...-.+|++.+.|--|+.++.++..++|.+|.+|..+-.+..
T Consensus 24 a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 24 AYNLYQQG-RYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHcc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 33344443 46889999999999999999999999999999999999999999999999999988866555443
No 21
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.31 E-value=0.2 Score=45.56 Aligned_cols=64 Identities=13% Similarity=-0.008 Sum_probs=57.1
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
=.++|+.++.-.+...|++...|..-..+|++.|+|-.|+.++.+|..++|+++..|..+-..+
T Consensus 17 ~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 3668999999999999999999999999999999999999999999999999998876654433
No 22
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=94.30 E-value=0.85 Score=32.76 Aligned_cols=64 Identities=14% Similarity=0.082 Sum_probs=51.7
Q ss_pred chhhccccchHHHHHHhHHHHHHHccch---HhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDR---IETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTL 126 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~---iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~l 126 (201)
|..+... .-.++|++.+..+....|++ .+++..-=.+|++.++|-.|++++..+...+|++|..
T Consensus 9 ~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 75 (119)
T TIGR02795 9 ALLVLKA-GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA 75 (119)
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc
Confidence 3344443 34689999999999888876 4678888899999999999999999999999988543
No 23
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=94.16 E-value=0.32 Score=36.48 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=56.8
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTC 129 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~ 129 (201)
|.-+....+ .++|..++.......|++.++|...-.+|+..|.+-.|++.+.++..++|+++..+.-
T Consensus 58 a~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 124 (135)
T TIGR02552 58 AACCQMLKE-YEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSEL 124 (135)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 444444444 4799999999999999999999988889999999999999999999999999876543
No 24
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.00 E-value=0.13 Score=34.89 Aligned_cols=40 Identities=28% Similarity=0.389 Sum_probs=34.8
Q ss_pred HhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 97 FEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 97 FEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
+++|++++.|-.|+.++.++..++|++|.++.....+.-.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 41 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQ 41 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 5799999999999999999999999999988766665543
No 25
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=93.52 E-value=1.4 Score=46.03 Aligned_cols=57 Identities=14% Similarity=0.175 Sum_probs=53.2
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHT 128 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~ 128 (201)
-+.|...|.-|+...|++++++...+.++++.|++-.|.+.+.++..++|++|..+.
T Consensus 44 ~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~ 100 (1157)
T PRK11447 44 EDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRS 100 (1157)
T ss_pred hHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 466788899999999999999999999999999999999999999999999998764
No 26
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.44 E-value=0.75 Score=46.03 Aligned_cols=69 Identities=7% Similarity=-0.080 Sum_probs=62.4
Q ss_pred cchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 69 EEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 69 ~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
-.-+++|..+|.-+++++|+++.++...--|-.|.+++=-|+.++.++...+|+++..|-..-.....+
T Consensus 99 ~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEI 167 (694)
T ss_pred cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Confidence 357899999999999999999999999999999999999999999999999999999886666655544
No 27
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=93.41 E-value=0.55 Score=37.05 Aligned_cols=64 Identities=11% Similarity=0.032 Sum_probs=57.3
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
=.++|+.++.-.....|++.++|.-.--+|.+.|.+-.|..++.++..++|++|..-.......
T Consensus 73 ~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 73 EYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999988775544443
No 28
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=93.25 E-value=1.8 Score=40.99 Aligned_cols=65 Identities=17% Similarity=0.293 Sum_probs=46.4
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
.-.++|.+++.-.....|++..+|.+.-.+|++.|.+-.|+.++.++..++|+++.+...++...
T Consensus 173 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 237 (899)
T TIGR02917 173 NRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATIL 237 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 34667777777777777777777777777777777777777777777777777776665555543
No 29
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=92.91 E-value=0.36 Score=47.35 Aligned_cols=68 Identities=10% Similarity=0.188 Sum_probs=61.8
Q ss_pred cchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 69 EEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 69 ~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
..-.++|+..+.-+....|++.++|..--.+|.+.|.+=.|+.++.++..++|+++.+|..+.+....
T Consensus 89 ~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~ 156 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVL 156 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45578999999999999999999999999999999999999999999999999999999888776543
No 30
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=92.91 E-value=3.6 Score=32.01 Aligned_cols=65 Identities=20% Similarity=0.068 Sum_probs=57.2
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
.=.++|+..+.-.....|++..+|..--.+|++.|.+-.|+..+.++..++|.++..+..+..+.
T Consensus 45 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 45788999999999999999999999899999999999999999999999999988776665554
No 31
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=92.90 E-value=0.18 Score=33.98 Aligned_cols=47 Identities=21% Similarity=0.185 Sum_probs=40.4
Q ss_pred hHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 89 RIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 89 ~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
+.++|..-=.+|++.++|-.|+.++.++..+||+++.++..+-....
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~ 48 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM 48 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45678888889999999999999999999999999998876655544
No 32
>PRK12370 invasion protein regulator; Provisional
Probab=92.50 E-value=0.44 Score=45.63 Aligned_cols=61 Identities=11% Similarity=-0.050 Sum_probs=39.5
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIR 132 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vr 132 (201)
+++|...+.-..+..|++.++|...-.+|...|.+--|+.++.+|..++|+++..|..+..
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 380 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGW 380 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5666666666666666666666655566666666666666666666666666666554433
No 33
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=92.36 E-value=0.65 Score=48.18 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=58.7
Q ss_pred cchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHH
Q psy7864 69 EEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRL 133 (201)
Q Consensus 69 ~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf 133 (201)
.|+ .+|+..++-.++..|++.+++..-.++|++.|++=.|+..+.++.++||+|++++..+..+
T Consensus 58 Gd~-~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i 121 (987)
T PRK09782 58 NDE-ATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI 121 (987)
T ss_pred CCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh
Confidence 443 3999999999999999999999999999999999999999999999999999999876444
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=92.05 E-value=2.5 Score=40.48 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=55.6
Q ss_pred ccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHH
Q psy7864 66 AKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHT 128 (201)
Q Consensus 66 ~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~ 128 (201)
....+ .++|+..+.-...++|++.++|..--.+|+..|++-.|+.++.++..++|.+|..+.
T Consensus 349 ~~~g~-~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~ 410 (553)
T PRK12370 349 TIHSE-YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI 410 (553)
T ss_pred HHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence 33444 689999999999999999999999999999999999999999999999999986643
No 35
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=91.98 E-value=0.64 Score=33.40 Aligned_cols=69 Identities=6% Similarity=-0.085 Sum_probs=57.4
Q ss_pred cchhhccccchHHHHHHhHHHHHHHccch---HhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHH
Q psy7864 61 IPDKLAKTEEPLEQAVKFLSPLQLLAKDR---IETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCL 130 (201)
Q Consensus 61 ~GekL~~~~dPLeeA~KfL~pL~~~a~~~---iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~ 130 (201)
.|.-+....+ .++|+..+..+....|++ ..+|...-.+|...+.+-.|++++..+....|+++..-.+.
T Consensus 45 l~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 45 LGEAYYAQGK-YADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred HHHHHHhhcc-HHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 3555555444 889999999999988885 57788889999999999999999999999999998765554
No 36
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.96 E-value=0.33 Score=28.17 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=28.4
Q ss_pred hHhHHhHhHhhhccchhHHHHHHHHHhhcCCCC
Q psy7864 91 ETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKN 123 (201)
Q Consensus 91 et~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~ 123 (201)
++|..--.+|+..|+|--|++++.++.+++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456666789999999999999999999999986
No 37
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=91.85 E-value=3.3 Score=39.20 Aligned_cols=63 Identities=16% Similarity=0.114 Sum_probs=53.1
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
.++|.+.+.-+....|++..++...-.+|++.|++-.|++.+.++..++|++|.+...+....
T Consensus 752 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 752 TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLY 814 (899)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 467888888888888899999998889999999999999999999999999888776665544
No 38
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=91.80 E-value=1.2 Score=34.72 Aligned_cols=57 Identities=16% Similarity=0.022 Sum_probs=26.9
Q ss_pred HHHHHHhHHHHHHHc--cchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHH
Q psy7864 72 LEQAVKFLSPLQLLA--KDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHT 128 (201)
Q Consensus 72 LeeA~KfL~pL~~~a--~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~ 128 (201)
+++|.+++.-..... +.....+..--.+|++.|.+-.|.+.+.++..++|+++..+.
T Consensus 115 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 173 (234)
T TIGR02521 115 YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL 173 (234)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHH
Confidence 444555544444322 223334444444555555555555555555555555544433
No 39
>PRK11189 lipoprotein NlpI; Provisional
Probab=91.44 E-value=0.89 Score=39.94 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=26.8
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCc
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNP 124 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P 124 (201)
.++|...+.-.+++.|++..+|.---.+|...|.|-.|++++.++.+++|++|
T Consensus 114 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 114 FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 34444445555555555555554444444455555555555555555555554
No 40
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=91.31 E-value=3.6 Score=42.93 Aligned_cols=65 Identities=17% Similarity=0.109 Sum_probs=59.7
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
-+++|..++.......|++..+|..--.+|+..|+|-.|++++.++.+++|+++..+..+..+..
T Consensus 366 ~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 366 NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999988899999999999999999999999999988887777653
No 41
>PRK11189 lipoprotein NlpI; Provisional
Probab=91.23 E-value=1.5 Score=38.49 Aligned_cols=61 Identities=11% Similarity=-0.118 Sum_probs=54.8
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCL 130 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~ 130 (201)
.-.++|+..+....++.|++.++|..---+|.+.|.|-.|+.++.++..++|+++..+..+
T Consensus 78 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l 138 (296)
T PRK11189 78 GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNR 138 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999999997765443
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=91.14 E-value=2.3 Score=38.90 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=79.9
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcC------------------------------
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALD------------------------------ 120 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id------------------------------ 120 (201)
=.++|...+.-+.+.+|++..++.+..++|++.|.|=-++.-|..+.+..
T Consensus 168 ~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~ 247 (398)
T PRK10747 168 ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEG 247 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 35789999999999999999999999999999999987774444443332
Q ss_pred ------------CCCchHHHHHHHHHHHHHhhhCCCCCCChHHHHHHhhhh--------ccCC-CC-CCHHHHHHHHHHH
Q psy7864 121 ------------PKNPTLHTCLIRLALFIEQMKGAEGDVHPAVWEVLKSGL--------EPIM-GS-KPALELNASYLKE 178 (201)
Q Consensus 121 ------------~~~P~lh~~~vrf~~~v~~~~~~~~~~~~~V~~Vl~~e~--------~~l~-~~-~~l~~~N~~fl~~ 178 (201)
|++|.++.++.+.......... .-..+.+.++..- ..+. ++ .....+-+.++++
T Consensus 248 l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~----A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 248 LKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDT----AQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHH----HHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhh
Confidence 3355566665555443311111 1222223332111 1111 22 3467777889999
Q ss_pred cCCChHHHHHHHHhhhhhc
Q psy7864 179 NASHLPALLCEVALSSEVG 197 (201)
Q Consensus 179 h~~S~~h~laaa~~~~~l~ 197 (201)
|.++..=+++.|+++...+
T Consensus 324 ~P~~~~l~l~lgrl~~~~~ 342 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHG 342 (398)
T ss_pred CCCCHHHHHHHHHHHHHCC
Confidence 9999988888888876554
No 43
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=90.97 E-value=3.8 Score=39.45 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=33.8
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIR 132 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vr 132 (201)
.++|+..+.-..+..|+...+|+.--.+|+..|.|--|+.++..+..++|++|.++..+..
T Consensus 347 ~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 407 (615)
T TIGR00990 347 HLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQ 407 (615)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4555555555555555555555555555555555555555555555555555555444433
No 44
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=90.69 E-value=0.45 Score=33.58 Aligned_cols=60 Identities=27% Similarity=0.385 Sum_probs=50.4
Q ss_pred HHHHHHhHHHHHHHccc--hHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKD--RIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIR 132 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~--~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vr 132 (201)
.++|+.++.-+....|. +...|..--.+|++.|+|-.|+..+.+ ..+++.++..|..+.+
T Consensus 5 y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~ 66 (84)
T PF12895_consen 5 YENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLAR 66 (84)
T ss_dssp HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHH
Confidence 57899999999999995 566677678999999999999999999 7888888888765443
No 45
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.02 E-value=0.45 Score=27.92 Aligned_cols=33 Identities=30% Similarity=0.293 Sum_probs=28.0
Q ss_pred hHhHHhHhHhhhccchhHHHHHHHHHhhcCCCC
Q psy7864 91 ETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKN 123 (201)
Q Consensus 91 et~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~ 123 (201)
++|..-=.+|+..++|-.|+.|..+|.+|||+|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 456666788999999999999999999999974
No 46
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=89.93 E-value=5.4 Score=38.37 Aligned_cols=64 Identities=16% Similarity=0.106 Sum_probs=54.1
Q ss_pred chHHHHHHhHHHHHHH---ccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLL---AKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRL 133 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~---a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf 133 (201)
+=.++|++++.-.... .|+...+|...--+|+..|+|--|+.++.++..++|+++..+..+...
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~ 374 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASM 374 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 4588999999988876 478888999999999999999999999999999999988776555543
No 47
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=89.69 E-value=1.2 Score=44.36 Aligned_cols=66 Identities=17% Similarity=0.126 Sum_probs=59.3
Q ss_pred cchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 69 EEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 69 ~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
..-.++|+..|..+....|++.+ |..---+|.+.|.+-.|+.++.++..++|+++.+|..+.....
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999 9988899999999999999999999999999999887766543
No 48
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=89.53 E-value=4.5 Score=42.15 Aligned_cols=63 Identities=19% Similarity=0.192 Sum_probs=44.6
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
=.++|+.++.-.....|+ .+.|...-.|+.+.|.+-.|+.++.++..++|+++.+|..+-.+.
T Consensus 591 r~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 591 QPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL 653 (987)
T ss_pred CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 356777777777777775 667776667777777777777777777777777777765554433
No 49
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=88.96 E-value=1.4 Score=28.21 Aligned_cols=53 Identities=21% Similarity=0.179 Sum_probs=47.2
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCC
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPK 122 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~ 122 (201)
+-.++|++++.......|....+|...-.+|...+.+-.+...+..+..++|.
T Consensus 48 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 48 GKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 45789999999999999999999998889999999999999999988887763
No 50
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=88.96 E-value=1.7 Score=36.30 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=52.6
Q ss_pred cchHHHHHHhHHHHHHHccchHhHhHHhHhH-hhhccc--hhHHHHHHHHHhhcCCCCchHHHH
Q psy7864 69 EEPLEQAVKFLSPLQLLAKDRIETHLMAFEI-YFRRQK--PLLMLQSVKRAWALDPKNPTLHTC 129 (201)
Q Consensus 69 ~dPLeeA~KfL~pL~~~a~~~iet~llaFEV-y~Rk~K--~LLaLqaL~~a~~id~~~P~lh~~ 129 (201)
.+=.++|+..+.-...+.|++.+.|..--.+ |.+.|. +-.|.+++.++.++||+++..+-.
T Consensus 86 ~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~ 149 (198)
T PRK10370 86 RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALML 149 (198)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHH
Confidence 3457899999999999999999999987776 577777 489999999999999999987633
No 51
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=88.50 E-value=1.5 Score=43.06 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=47.2
Q ss_pred HHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 74 QAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 74 eA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
+|..++.-.....|++..+|..--.+|++.|.+-.|+.++.++..++|++|.++..+....
T Consensus 268 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 268 QAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5788888888888888888887788888888888888888888888888887766554443
No 52
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.62 E-value=1.8 Score=38.47 Aligned_cols=66 Identities=20% Similarity=0.161 Sum_probs=55.7
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHH--------------HHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLH--------------TCLIRLALFI 137 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh--------------~~~vrf~~~v 137 (201)
...|-+-|+--+++.|+++.+|++--.||.+.|-.-+|=++-.+|.+++|++-+|+ +....|.+++
T Consensus 51 ~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al 130 (250)
T COG3063 51 YAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERAL 130 (250)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHH
Confidence 45666667777789999999999999999999999999999999999999987664 3456666665
No 53
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=87.48 E-value=8.7 Score=33.84 Aligned_cols=67 Identities=9% Similarity=0.085 Sum_probs=57.1
Q ss_pred hHHHHHHhHHHHHHHccch---HhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDR---IETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~---iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
=.++|+..+.-+...-|++ ..+|.+-=++|+.+|+|-.|+.+........|+||.....+.++....
T Consensus 158 ~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~ 227 (263)
T PRK10803 158 RQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIM 227 (263)
T ss_pred CHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHH
Confidence 3678888888888888887 478998899999999999999999999999999999888877765544
No 54
>KOG1126|consensus
Probab=87.24 E-value=0.96 Score=44.88 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=70.0
Q ss_pred CcchhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 60 LIPDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 60 ~~GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
+.|-.+..+ |=+|.|++..+.-+...|.+.-+|.=.==||++++||..|.==+.+|..|+|.|..+-+|+-.+.+..
T Consensus 460 LlGhE~~~~-ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~ 536 (638)
T KOG1126|consen 460 LLGHESIAT-EEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQL 536 (638)
T ss_pred hcCChhhhh-HHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHh
Confidence 778887764 56999999999999999999999997778999999999999999999999999999988888887766
No 55
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=86.60 E-value=16 Score=29.98 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=51.0
Q ss_pred chHHHHHHhHHHHHHHccchH---hHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRI---ETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLH 127 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~i---et~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh 127 (201)
.-.++|+..+.-+....|++. ++|..--.+|+..++|-.|+..+..+.+++|++|.++
T Consensus 47 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 47 GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 347899999999999988764 6788888999999999999999999999999999753
No 56
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=85.21 E-value=3.3 Score=36.46 Aligned_cols=54 Identities=11% Similarity=0.158 Sum_probs=47.5
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCC
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKN 123 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~ 123 (201)
+-+++|.+++.-+....|+..++|..--.+|.+.|++-.|++.+.++..++|.+
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 457889999999888889999999988899999999999999999998888765
No 57
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=83.44 E-value=6.8 Score=31.23 Aligned_cols=68 Identities=18% Similarity=0.116 Sum_probs=55.3
Q ss_pred cchHHHHHHhHHHHHHHccc---hHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 69 EEPLEQAVKFLSPLQLLAKD---RIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 69 ~dPLeeA~KfL~pL~~~a~~---~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
..-.++|+.++.-.....++ ....|..--.+|.+.|.|-.|+.++.++..++|+++..+..+......
T Consensus 48 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 118 (172)
T PRK02603 48 DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHK 118 (172)
T ss_pred cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 45678899988888877665 346788888999999999999999999999999998887766555543
No 58
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=83.37 E-value=7.5 Score=30.73 Aligned_cols=67 Identities=15% Similarity=-0.016 Sum_probs=54.8
Q ss_pred cchHHHHHHhHHHHHHHccc---hHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 69 EEPLEQAVKFLSPLQLLAKD---RIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 69 ~dPLeeA~KfL~pL~~~a~~---~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
..-.++|+.++.-.....++ ...+|.----+|...|.+-.|+.++.++..++|.++..|..+.....
T Consensus 48 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 48 EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34578899988888777666 34578888899999999999999999999999999887776666554
No 59
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=83.00 E-value=3.8 Score=35.40 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=54.8
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHh---HHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETH---LMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTC 129 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~---llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~ 129 (201)
|..+.. ..=.++|+..+.-+....|....+. +.-..+|++.+.|-.|+.+..+..++.|+||.+-..
T Consensus 39 A~~~~~-~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 39 AQQKLQ-DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred HHHHHH-CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 444443 2357799999999999999876665 666789999999999999999999999999987543
No 60
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=82.84 E-value=3.8 Score=39.57 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=54.6
Q ss_pred cchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHH
Q psy7864 69 EEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTC 129 (201)
Q Consensus 69 ~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~ 129 (201)
.+=.++|..-+.--..+.|+ ..+|.+--.+|...|++-.|...+.+|..+||.+|.++.|
T Consensus 433 ~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~ 492 (517)
T PRK10153 433 KGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWI 492 (517)
T ss_pred cCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHH
Confidence 45578899999999999995 7899999999999999999999999999999999998877
No 61
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=82.81 E-value=7.7 Score=35.54 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=57.8
Q ss_pred cchHHHHHHhHHHHHHHccch-HhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 69 EEPLEQAVKFLSPLQLLAKDR-IETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 69 ~dPLeeA~KfL~pL~~~a~~~-iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
..-.+.|..++.-..+..|++ +.+.+...++++..|.|-.|+..+..+...+|+||.++..+..+...
T Consensus 131 ~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~ 199 (409)
T TIGR00540 131 RGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR 199 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 356788999998888878886 57888789999999999999999999999999999988777766644
No 62
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=82.72 E-value=3.6 Score=35.15 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=29.8
Q ss_pred HHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 75 AVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 75 A~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
|...|..+..-.|++...|..--.+|++-|.+-.||..+.++.+.+|++|.++..+....
T Consensus 199 ~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l 258 (280)
T PF13429_consen 199 AREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADAL 258 (280)
T ss_dssp HHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccc
Confidence 444455555544555555554455555555555555555555555555555554444443
No 63
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=82.68 E-value=39 Score=30.94 Aligned_cols=50 Identities=18% Similarity=0.057 Sum_probs=42.7
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhc
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWAL 119 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~i 119 (201)
.=.++|...+..+.+.+|++..++.+..++|++.|.|=-++..+....+.
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 34889999999999999999999999999999999987666666655544
No 64
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=82.66 E-value=6.6 Score=34.51 Aligned_cols=65 Identities=18% Similarity=0.120 Sum_probs=52.6
Q ss_pred cchHHHHHHhHHHHHHHccch-HhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 69 EEPLEQAVKFLSPLQLLAKDR-IETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 69 ~dPLeeA~KfL~pL~~~a~~~-iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
..-.++|++++.-+....|++ .+++...-.+|.+.|++-.|++.+.++..++|+++.+ ..++.+.
T Consensus 227 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~ 292 (389)
T PRK11788 227 QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLL 292 (389)
T ss_pred CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHH
Confidence 345788999999999988876 4667777899999999999999999999999977544 4455543
No 65
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=82.25 E-value=5.1 Score=37.60 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=25.5
Q ss_pred HHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCC
Q psy7864 74 QAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKN 123 (201)
Q Consensus 74 eA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~ 123 (201)
+|++++.-.+...|.+.+...+-.+.++.+++|-+||.+.++|..+.|++
T Consensus 218 ~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~ 267 (395)
T PF09295_consen 218 EAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSE 267 (395)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 44555554444455444444444455555555555555555555555554
No 66
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.75 E-value=2.1 Score=24.77 Aligned_cols=33 Identities=24% Similarity=0.199 Sum_probs=29.0
Q ss_pred hHhHHhHhHhhhccchhHHHHHHHHHhhcCCCC
Q psy7864 91 ETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKN 123 (201)
Q Consensus 91 et~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~ 123 (201)
++|..--.+|...|.+=.|+.++.++.+++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 467788899999999999999999999999854
No 67
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=81.74 E-value=4.5 Score=31.12 Aligned_cols=50 Identities=20% Similarity=0.100 Sum_probs=43.8
Q ss_pred chHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 88 DRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 88 ~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
..+.+....++.+++.|.|-.|++.+.++..+||.+-.+|..+++.....
T Consensus 60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~ 109 (146)
T PF03704_consen 60 LYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQ 109 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHC
Confidence 35788889999999999999999999999999999999999999988654
No 68
>KOG3060|consensus
Probab=81.74 E-value=5.9 Score=35.81 Aligned_cols=67 Identities=18% Similarity=0.118 Sum_probs=59.8
Q ss_pred ccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 68 TEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 68 ~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
+..++ +|++-|.-.++-=+++.|+|.-..|||+--+-|=.|.=|+....-|.|-+|.+|.++....=
T Consensus 133 ~GK~l-~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Y 199 (289)
T KOG3060|consen 133 QGKNL-EAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLY 199 (289)
T ss_pred cCCcH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 44566 88888888888889999999999999999999999999999999999999999999877653
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=80.36 E-value=5.7 Score=38.52 Aligned_cols=65 Identities=12% Similarity=0.088 Sum_probs=61.0
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
.++|+.++.--.++.|..+|-|.+--.||-+.|.+.-|..++..|+.+|..+.-|-...++..-.
T Consensus 210 ~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 210 YEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999998888887643
No 70
>PLN02789 farnesyltranstransferase
Probab=79.78 E-value=9.5 Score=34.53 Aligned_cols=59 Identities=12% Similarity=-0.072 Sum_probs=41.8
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccc-hhHHHHHHHHHhhcCCCCc--hHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQK-PLLMLQSVKRAWALDPKNP--TLHTC 129 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K-~LLaLqaL~~a~~id~~~P--~lh~~ 129 (201)
=-++|+.+..-..+..|++..+|.--..|....++ +--+|.++..+..++|.+. |.|++
T Consensus 52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~ 113 (320)
T PLN02789 52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRR 113 (320)
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHH
Confidence 34567777777777788888888877777777663 4577778888888888774 44554
No 71
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=78.83 E-value=9.4 Score=31.39 Aligned_cols=73 Identities=7% Similarity=0.008 Sum_probs=56.7
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHh---HhHHhHhHhhhc--------cchhHHHHHHHHHhhcCCCCchHHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIE---THLMAFEIYFRR--------QKPLLMLQSVKRAWALDPKNPTLHTCL 130 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~ie---t~llaFEVy~Rk--------~K~LLaLqaL~~a~~id~~~P~lh~~~ 130 (201)
|.-+... .=.++|+..+..+.+..|++.. +|....-+|+.. +.+-.|++.+..+...+|+++..+..+
T Consensus 77 a~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 155 (235)
T TIGR03302 77 AYAYYKS-GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK 155 (235)
T ss_pred HHHHHhc-CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence 3334433 3588999999999999998776 677777777765 788899999999999999998887665
Q ss_pred HHHHH
Q psy7864 131 IRLAL 135 (201)
Q Consensus 131 vrf~~ 135 (201)
.+...
T Consensus 156 ~~~~~ 160 (235)
T TIGR03302 156 KRMDY 160 (235)
T ss_pred HHHHH
Confidence 55433
No 72
>PRK15331 chaperone protein SicA; Provisional
Probab=78.76 E-value=8 Score=32.35 Aligned_cols=65 Identities=11% Similarity=0.044 Sum_probs=55.8
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchH----HHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTL----HTCLIRLA 134 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~l----h~~~vrf~ 134 (201)
-=+++|.+|++-|..+.+-+.+-|+----||-.++.|-.|+.+-..|..+++++|.. ..|.+.+.
T Consensus 51 Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 51 GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 358999999999999999999999877889999999999999999999999998755 34554443
No 73
>PLN02789 farnesyltranstransferase
Probab=77.89 E-value=8.2 Score=34.95 Aligned_cols=51 Identities=10% Similarity=-0.035 Sum_probs=26.4
Q ss_pred HHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCC
Q psy7864 73 EQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKN 123 (201)
Q Consensus 73 eeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~ 123 (201)
++++.|+.-+.+..|++..+|.--.=|..+-+.|--+|.+..++..+||+|
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence 444555544445555555555544444444455555555556665655554
No 74
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=77.56 E-value=3.7 Score=38.53 Aligned_cols=69 Identities=16% Similarity=0.037 Sum_probs=56.7
Q ss_pred hccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 65 LAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 65 L~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
|++..++ +.|++.++-.-+.+|+.+++|..--++|+..|.|=.||-+|+..=-+...+...|.+++.+.
T Consensus 244 Ll~k~~~-~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~~~~~~p~~ 312 (395)
T PF09295_consen 244 LLSKKKY-ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYKLKRPVPAK 312 (395)
T ss_pred HHhcCCH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchhhhcCCCcc
Confidence 4455555 99999999999999999999999999999999999999999977555445556676655544
No 75
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=76.34 E-value=4.2 Score=26.84 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=34.1
Q ss_pred hHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 98 EIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 98 EVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
.+|+..|+|=.|+.++..+.+.+|+++..+..+-.....
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~ 43 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ 43 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999999999998777766543
No 76
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=74.45 E-value=6.1 Score=27.64 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=42.8
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRA 116 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a 116 (201)
|.-+.+..+ -++|+.+++- ....+.+++.|.+.-.+|+.-|+|=-|+.+|.+|
T Consensus 32 a~~~~~~~~-y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 32 AQCYFQQGK-YEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHTTH-HHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHCCC-HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 444444443 5899999988 8888899999999999999999999999998865
No 77
>KOG1125|consensus
Probab=74.33 E-value=6 Score=38.99 Aligned_cols=64 Identities=16% Similarity=0.091 Sum_probs=52.0
Q ss_pred cchhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCch
Q psy7864 61 IPDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPT 125 (201)
Q Consensus 61 ~GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~ 125 (201)
+|-.|++..| |-+|+-++.-=-.-.|.++++|..-==|-.--++=.++..||.++..|||+|-.
T Consensus 291 eG~~lm~nG~-L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nle 354 (579)
T KOG1125|consen 291 EGCNLMKNGD-LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLE 354 (579)
T ss_pred HHHHHHhcCC-chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHH
Confidence 4667777777 888888888777788999999986555666668899999999999999999943
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=72.23 E-value=12 Score=32.47 Aligned_cols=55 Identities=7% Similarity=-0.164 Sum_probs=44.9
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTL 126 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~l 126 (201)
+++|...++...+..|++...|..--.||...|.+=.+.+.+.++..++|.+|.+
T Consensus 130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~ 184 (355)
T cd05804 130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSML 184 (355)
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcch
Confidence 6788888888888888888888888888888888888888888888887765544
No 79
>KOG4626|consensus
Probab=72.05 E-value=7.5 Score=39.39 Aligned_cols=66 Identities=17% Similarity=0.094 Sum_probs=55.5
Q ss_pred cchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 69 EEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 69 ~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
..-|.+|+.+.+-..++.|+.|++|+=---.|+++|+.=+|.+|.-.|.+|||..-..|.-+=-+.
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 456788999999999999999999998888899999999999999999999997655444333333
No 80
>PRK10941 hypothetical protein; Provisional
Probab=70.32 E-value=11 Score=33.61 Aligned_cols=60 Identities=22% Similarity=0.394 Sum_probs=41.3
Q ss_pred HhHhhhccchhHHHHHHHHHhhcCCCCchH--------------HHHHHHHHHHHHhhhCCCCCCChHHHHHHhhhhccC
Q psy7864 97 FEIYFRRQKPLLMLQSVKRAWALDPKNPTL--------------HTCLIRLALFIEQMKGAEGDVHPAVWEVLKSGLEPI 162 (201)
Q Consensus 97 FEVy~Rk~K~LLaLqaL~~a~~id~~~P~l--------------h~~~vrf~~~v~~~~~~~~~~~~~V~~Vl~~e~~~l 162 (201)
-.+|++.++|..||+|+.+...++|++|.- |..+-.|...+.... .+++..+|...+..+
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P------~dp~a~~ik~ql~~l 261 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP------EDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC------CchhHHHHHHHHHHH
Confidence 357999999999999999999999999854 333444444443321 355666666655544
No 81
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=70.02 E-value=13 Score=29.59 Aligned_cols=54 Identities=19% Similarity=0.138 Sum_probs=45.3
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccc--------------hhHHHHHHHHHhhcCCCC
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQK--------------PLLMLQSVKRAWALDPKN 123 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K--------------~LLaLqaL~~a~~id~~~ 123 (201)
.-.++|+.++.-.....|++...|..--.+|...++ |-.|++++.++..++|++
T Consensus 86 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 86 GEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 456899999999999999999999888888888777 566788888888888877
No 82
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=69.72 E-value=13 Score=30.22 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=55.0
Q ss_pred chhhccccchHHHHHHhHHHHHHHcc---chHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAK---DRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCL 130 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~---~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~ 130 (201)
|+.+++. .=..+|++.|.-|.+-=| =.-.+++.--..|+..+.|-.|+-++.+-.++.|.||.++-.+
T Consensus 17 a~~~l~~-~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 17 AQEALQK-GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred HHHHHHh-CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4444442 347889999999987644 4668888888999999999999999999999999999886443
No 83
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=68.66 E-value=10 Score=19.42 Aligned_cols=32 Identities=22% Similarity=0.196 Sum_probs=25.7
Q ss_pred HhHHhHhHhhhccchhHHHHHHHHHhhcCCCC
Q psy7864 92 THLMAFEIYFRRQKPLLMLQSVKRAWALDPKN 123 (201)
Q Consensus 92 t~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~ 123 (201)
+|..--.+|+..+.+--|..++..+.+++|++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 45555668888899999999999998888764
No 84
>KOG0553|consensus
Probab=68.61 E-value=15 Score=33.69 Aligned_cols=64 Identities=20% Similarity=0.166 Sum_probs=49.4
Q ss_pred HHHHHhHHHHHHHccchHhHhH-HhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 73 EQAVKFLSPLQLLAKDRIETHL-MAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 73 eeA~KfL~pL~~~a~~~iet~l-laFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
+.|++=|.-=+.+.|.+..+|. |++ .|+-.|||-.|+++-++|..|||+|+.+-..+-.-...+
T Consensus 132 ~~AVkDce~Al~iDp~yskay~RLG~-A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 132 EDAVKDCESALSIDPHYSKAYGRLGL-AYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHH-HHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 3778888888888888888887 554 677889999999999999999999987766554444444
No 85
>KOG0543|consensus
Probab=68.08 E-value=24 Score=33.45 Aligned_cols=71 Identities=17% Similarity=0.163 Sum_probs=59.8
Q ss_pred cchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q psy7864 69 EEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFIEQM 140 (201)
Q Consensus 69 ~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v~~~ 140 (201)
.+|- +|++.|.--+++.|+|+-+-.=.=++|+-.+-|=+|.--+.++.+++|+|-.++..++++...+...
T Consensus 271 ~~~~-~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 271 KEYK-EAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred hhHH-HHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 3444 8999999999999999988766667777777788888899999999999999999999998777443
No 86
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=67.56 E-value=23 Score=29.37 Aligned_cols=68 Identities=10% Similarity=0.083 Sum_probs=56.5
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcC---CCCchHHHHHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALD---PKNPTLHTCLIRLALFI 137 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id---~~~P~lh~~~vrf~~~v 137 (201)
-=+++|+....--..++|++.+.+.-+=++|+.-|+.-.|.+|+..+..+. |.+..|+.+.-.....+
T Consensus 83 g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 83 KHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred hhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHh
Confidence 347899999999999999999999999999999999999999999998886 44455565555554443
No 87
>PRK14574 hmsH outer membrane protein; Provisional
Probab=66.73 E-value=17 Score=37.28 Aligned_cols=62 Identities=11% Similarity=-0.010 Sum_probs=50.2
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
.+.|+.+++.+++..|++.+++..-..+|...+++-.|+..+.++..++|.+... ..++.+.
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~ 179 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLN 179 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence 3499999999999999999888877889999999999999999998888886554 3444433
No 88
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=66.55 E-value=12 Score=24.67 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=31.3
Q ss_pred hhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 101 FRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 101 ~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
+..|+|--|++.+..+...+|+++.+...+....-.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 37 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK 37 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999998887777644
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=62.87 E-value=20 Score=31.13 Aligned_cols=63 Identities=11% Similarity=-0.044 Sum_probs=45.4
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
...+.+.+..+....|+...++..--.+|+..|.|-.|.+.+.++..++|+++..|..+...+
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~ 158 (355)
T cd05804 96 RDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVL 158 (355)
T ss_pred chhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 344555555444445555555555556889999999999999999999999998877766554
No 90
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=60.23 E-value=25 Score=31.44 Aligned_cols=61 Identities=18% Similarity=0.111 Sum_probs=54.2
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLI 131 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~v 131 (201)
=.++|+.-++-+...+|++-++|.+-==+|.|.|.+..|=+.+..|.++.|++|.+--.+-
T Consensus 115 ~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlg 175 (257)
T COG5010 115 NFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLG 175 (257)
T ss_pred chHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHH
Confidence 4789999999999999999999998888999999999999999999999999998755543
No 91
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=59.81 E-value=26 Score=23.65 Aligned_cols=28 Identities=7% Similarity=0.083 Sum_probs=22.9
Q ss_pred hhhccchhHHHHHHHHHhhcCCCCchHH
Q psy7864 100 YFRRQKPLLMLQSVKRAWALDPKNPTLH 127 (201)
Q Consensus 100 y~Rk~K~LLaLqaL~~a~~id~~~P~lh 127 (201)
++|-|.|--|++++..+.+++|+|+..-
T Consensus 11 ~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 11 HYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 5688999999999999999999997653
No 92
>KOG0624|consensus
Probab=59.60 E-value=45 Score=31.80 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=54.2
Q ss_pred HHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 73 EQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 73 eeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
..|+.|+.-|++-+|=...-+.+-.+.|+..+.+..|+--++.+.++..+|...|--+-.+.=.|
T Consensus 172 ~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV 236 (504)
T ss_pred hhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence 45677888888888878888888889999999999999999999999888888887777776555
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=59.18 E-value=42 Score=29.97 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=34.2
Q ss_pred hhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 100 YFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 100 y~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
|++.|.+-.|..-|..|.++||+++..|.-+...+..+
T Consensus 45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~ 82 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKL 82 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 88999999999999999999999999998777776655
No 94
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=58.79 E-value=14 Score=22.99 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=22.9
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHh
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMA 96 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~lla 96 (201)
+++|.+.++......|++.++|..-
T Consensus 17 ~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 17 PDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 6899999999999999999999753
No 95
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=57.58 E-value=50 Score=27.14 Aligned_cols=26 Identities=12% Similarity=-0.061 Sum_probs=19.1
Q ss_pred hHhhhcc-chhHHHHHHHHHhhcCCCC
Q psy7864 98 EIYFRRQ-KPLLMLQSVKRAWALDPKN 123 (201)
Q Consensus 98 EVy~Rk~-K~LLaLqaL~~a~~id~~~ 123 (201)
|-.+.+| ++.-++-++-+|..+.|+-
T Consensus 98 E~L~~~g~~~~ega~hf~nAl~Vc~qP 124 (148)
T TIGR00985 98 EELMAQGTNVDEGAVHFYNALKVYPQP 124 (148)
T ss_pred HHHHhCCCchHHHHHHHHHHHHhCCCH
Confidence 5555666 8888888888888887753
No 96
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=57.36 E-value=53 Score=28.40 Aligned_cols=64 Identities=22% Similarity=0.313 Sum_probs=49.5
Q ss_pred chHHHHHHhHHHHHHHccch------Hh--HhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDR------IE--THLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~------ie--t~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
.|||-|+-+|.-+.+..+.. |. .-..+-=|++++|+|-+|..-|++... ||+++.+ + -.|...+
T Consensus 83 TPLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~-r--~kL~~II 154 (200)
T cd00280 83 TPLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKL-R--MKLLMII 154 (200)
T ss_pred ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhH-H--HHHHHHH
Confidence 59999999999999887652 11 223566699999999999999999988 8888777 2 2444445
No 97
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=56.97 E-value=50 Score=27.25 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=50.2
Q ss_pred chhhccccchHHHHHHhHHHHHHHccc---hHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKD---RIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTC 129 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~---~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~ 129 (201)
|..++...| .++|++.++-|...-|. -.++++..-..|++.|.|-.|...+.+-.+.-|+||.+-..
T Consensus 12 a~~~~~~g~-y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 12 ALEALQQGD-YEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp HHHHHHCT--HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred HHHHHHCCC-HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 444555555 78899999999987655 56777788889999999999999999999999999976544
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=54.84 E-value=63 Score=32.57 Aligned_cols=68 Identities=6% Similarity=-0.124 Sum_probs=58.3
Q ss_pred cchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 69 EEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 69 ~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
..=+++|+-..+-++...|++.+.|.+--.+...-|.|=-|..+..++.+-+|+++......-...+.
T Consensus 133 ~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~ 200 (694)
T PRK15179 133 QQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR 200 (694)
T ss_pred hccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999988777777776555444443
No 99
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=53.80 E-value=13 Score=21.77 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=17.9
Q ss_pred HhHhhhccchhHHHHHHHHHhhc-----CCCCch
Q psy7864 97 FEIYFRRQKPLLMLQSVKRAWAL-----DPKNPT 125 (201)
Q Consensus 97 FEVy~Rk~K~LLaLqaL~~a~~i-----d~~~P~ 125 (201)
-.+|...|+|--|++.+.++..| .++||+
T Consensus 9 a~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 9 ANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 35788889999999988887665 566664
No 100
>KOG2076|consensus
Probab=51.53 E-value=63 Score=33.66 Aligned_cols=69 Identities=23% Similarity=0.083 Sum_probs=59.3
Q ss_pred ccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 68 TEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 68 ~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
+-.=+++|++.|.-....+|.++..|..--+||--+|+.--+|+|-..|--++|+++.+-..+-.++..
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 346699999999999999999999999999999999999999999888888999998765555554433
No 101
>KOG2396|consensus
Probab=50.84 E-value=49 Score=32.60 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=47.0
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHH-HHHHhhcCCCCchHHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQS-VKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqa-L~~a~~id~~~P~lh~~~vrf~~ 135 (201)
-.+--+.+.-++.+.|++.+.|..|..--+-.+--+-+.++ +.++.+.+|++|.|-.|-+|+..
T Consensus 121 ~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL 185 (568)
T KOG2396|consen 121 YGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMEL 185 (568)
T ss_pred hhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Confidence 34555667778889999999999764433333333666666 56788999999999999888753
No 102
>KOG4162|consensus
Probab=49.53 E-value=2.4e+02 Score=29.17 Aligned_cols=64 Identities=17% Similarity=0.035 Sum_probs=45.0
Q ss_pred HHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 74 QAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 74 eA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
+|.-.|.-.....|-..-+|.+.=.++.++|++.-|.+|...|+.|||+|+..-+.+......+
T Consensus 668 ~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 668 EARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 3333333333334445556666667788899999999999999999999987766666655443
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=49.45 E-value=13 Score=33.12 Aligned_cols=54 Identities=22% Similarity=0.302 Sum_probs=44.9
Q ss_pred ccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchH
Q psy7864 68 TEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTL 126 (201)
Q Consensus 68 ~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~l 126 (201)
.++=.++|+++|.. .+++|...+..+||++-+++-||-+-++.+.++|.++..+
T Consensus 114 ~~~~~~~AL~~l~~-----~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~ 167 (290)
T PF04733_consen 114 HEGDYEEALKLLHK-----GGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILT 167 (290)
T ss_dssp CCCHHHHHHCCCTT-----TTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHH
T ss_pred HcCCHHHHHHHHHc-----cCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHH
Confidence 35678888888864 2789999999999999999999999999999998876544
No 104
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=49.40 E-value=72 Score=27.29 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=38.8
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhc-----------cchhHHHHHHHHHhhcCCCCchHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRR-----------QKPLLMLQSVKRAWALDPKNPTLHTC 129 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk-----------~K~LLaLqaL~~a~~id~~~P~lh~~ 129 (201)
.-+++|+.=+.--+.+.|+.-++....=-.|+-. .-|=+|..|..+|..+||+|..+...
T Consensus 49 ~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3578888888888888998766644322222222 33788999999999999999666543
No 105
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=48.90 E-value=1.1e+02 Score=22.58 Aligned_cols=55 Identities=7% Similarity=0.018 Sum_probs=46.2
Q ss_pred HHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCC--chHHHHHHHHHHHH
Q psy7864 83 QLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKN--PTLHTCLIRLALFI 137 (201)
Q Consensus 83 ~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~--P~lh~~~vrf~~~v 137 (201)
..-+|+++++....-++|+..|+|=-|+.-|....+.|++. -.....++.++..+
T Consensus 15 ~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~l 71 (90)
T PF14561_consen 15 LAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELL 71 (90)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHc
Confidence 44689999999999999999999999999999999998754 77888999999887
No 106
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=47.11 E-value=67 Score=25.23 Aligned_cols=48 Identities=6% Similarity=-0.125 Sum_probs=37.5
Q ss_pred cchHHHHHHhHHHHHHHccchHhHhHHhHhHhh-------hccchhHHHHHHHHH
Q psy7864 69 EEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYF-------RRQKPLLMLQSVKRA 116 (201)
Q Consensus 69 ~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~-------Rk~K~LLaLqaL~~a 116 (201)
..-.++|++++.-.....|...++|....-||. +.|.+-.|+..+..+
T Consensus 85 ~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 85 NGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 455689999999999999999999988888888 667766555554443
No 107
>KOG4648|consensus
Probab=46.85 E-value=23 Score=33.77 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=29.1
Q ss_pred HhhhccchhHHHHHHHHHhhcCCCCchHHHHH
Q psy7864 99 IYFRRQKPLLMLQSVKRAWALDPKNPTLHTCL 130 (201)
Q Consensus 99 Vy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~ 130 (201)
-|+.+|||=-|+-|--++..++|.||.+|..-
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NR 137 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINR 137 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhH
Confidence 48899999999999999999999999998653
No 108
>KOG0495|consensus
Probab=46.61 E-value=2.7e+02 Score=28.90 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=84.9
Q ss_pred ccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhCCCCCC
Q psy7864 68 TEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFIEQMKGAEGDV 147 (201)
Q Consensus 68 ~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v~~~~~~~~~~ 147 (201)
-++|-+ |..+|.---+++|.+++-|++ |.|-.-|=-|=+-|++|..+=|.+|.+-.-..+|-.+ .+ -
T Consensus 389 lE~~~d-arilL~rAveccp~s~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~----ng----n 455 (913)
T KOG0495|consen 389 LEEPED-ARILLERAVECCPQSMDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEA----NG----N 455 (913)
T ss_pred ccChHH-HHHHHHHHHHhccchHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHh----cC----C
Confidence 467777 999999999999999999985 4455556666667999999999999988777666543 23 2
Q ss_pred ChHHHHHHhhhhccCCCC---CCHHHHHHHHHHHc-CCChHHHHHHHHhhhhhcc
Q psy7864 148 HPAVWEVLKSGLEPIMGS---KPALELNASYLKEN-ASHLPALLCEVALSSEVGF 198 (201)
Q Consensus 148 ~~~V~~Vl~~e~~~l~~~---~~l~~~N~~fl~~h-~~S~~h~laaa~~~~~l~~ 198 (201)
-..|.++|..++.+|-.+ .+..+|-.+--..+ .+|..--.|..++..-+|+
T Consensus 456 ~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigv 510 (913)
T KOG0495|consen 456 VDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGV 510 (913)
T ss_pred HHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcc
Confidence 457888899999887732 57777766655443 3455555555555555554
No 109
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=45.96 E-value=70 Score=24.36 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=39.8
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRA 116 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a 116 (201)
.-.++|+.++.-+....|-+-..|.....+|.+.|.+-.|++...+.
T Consensus 76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 76 GDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999988876644
No 110
>KOG2076|consensus
Probab=44.52 E-value=89 Score=32.63 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=56.6
Q ss_pred chHHHHHHhHHHHHHHcc-chHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAK-DRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~-~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
+=..+|+.|+.||...-+ ++..+|..--+.|+-.|-|=.|++|-..+..++|+|-+.-..+..+...
T Consensus 428 ~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~ 495 (895)
T KOG2076|consen 428 GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQ 495 (895)
T ss_pred ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHh
Confidence 346789999999998754 5788999999999999999999999999999999998776665555543
No 111
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=43.85 E-value=58 Score=29.33 Aligned_cols=45 Identities=27% Similarity=0.409 Sum_probs=36.4
Q ss_pred HhHhHhhhccchhHHHHHHHHHhhcCCCCc--------------hHHHHHHHHHHHHHh
Q psy7864 95 MAFEIYFRRQKPLLMLQSVKRAWALDPKNP--------------TLHTCLIRLALFIEQ 139 (201)
Q Consensus 95 laFEVy~Rk~K~LLaLqaL~~a~~id~~~P--------------~lh~~~vrf~~~v~~ 139 (201)
..+-+|+|.++|.+|++|+.+...++|++| ..|+.+-.+...+..
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 567889999999999999999999999998 336666666665533
No 112
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=41.88 E-value=79 Score=28.10 Aligned_cols=85 Identities=15% Similarity=0.018 Sum_probs=60.4
Q ss_pred ccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhCCCCCC
Q psy7864 68 TEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFIEQMKGAEGDV 147 (201)
Q Consensus 68 ~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v~~~~~~~~~~ 147 (201)
..|-+.+|+.+..-|.+-.+.+..+...-+=+++..|+|=-|-..|..|...||++|..-.+++-..... + .-
T Consensus 179 g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~----g---k~ 251 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHL----G---KP 251 (290)
T ss_dssp TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHT----T----T
T ss_pred CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHh----C---CC
Confidence 5577889999999988877777777777777888999999999999999999999998777766655432 2 12
Q ss_pred ChHHHHHHhhhh
Q psy7864 148 HPAVWEVLKSGL 159 (201)
Q Consensus 148 ~~~V~~Vl~~e~ 159 (201)
.+.+...|.+-.
T Consensus 252 ~~~~~~~l~qL~ 263 (290)
T PF04733_consen 252 TEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHCH
T ss_pred hhHHHHHHHHHH
Confidence 345666666433
No 113
>KOG0553|consensus
Probab=40.06 E-value=56 Score=29.94 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=52.8
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCc
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNP 124 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P 124 (201)
|.++.+..+ -.+|+-+..--.++.|++---|+----+|.+-|-|-.|++..+.|.+|||+.-
T Consensus 88 GN~~m~~~~-Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys 149 (304)
T KOG0553|consen 88 GNKLMKNKD-YQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS 149 (304)
T ss_pred HHHHHHhhh-HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH
Confidence 666665443 56777788888888999999999999999999999999999999999999874
No 114
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=39.91 E-value=65 Score=21.70 Aligned_cols=47 Identities=13% Similarity=0.046 Sum_probs=32.5
Q ss_pred HhHhHHhHhHhhhccchhHHHHHHHHHhhc----CCCCchHHHHHHHHHHH
Q psy7864 90 IETHLMAFEIYFRRQKPLLMLQSVKRAWAL----DPKNPTLHTCLIRLALF 136 (201)
Q Consensus 90 iet~llaFEVy~Rk~K~LLaLqaL~~a~~i----d~~~P~lh~~~vrf~~~ 136 (201)
..++..--.||.+.|+|-.|+.++.++..+ .+++|.+-.++..+...
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~ 55 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGEC 55 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455666668999999999999999988766 34556555555554443
No 115
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=39.75 E-value=68 Score=30.96 Aligned_cols=50 Identities=10% Similarity=-0.066 Sum_probs=37.2
Q ss_pred chHHHHHHhHHHHHHHccchHhH---hHHhHhHhhhccchhHHHHHHHHHhhc
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIET---HLMAFEIYFRRQKPLLMLQSVKRAWAL 119 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet---~llaFEVy~Rk~K~LLaLqaL~~a~~i 119 (201)
.=.++|+..++--+++.|++.++ |.----+|...|++-.|+.|+.+|..+
T Consensus 89 GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 89 GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34677888888877788887754 665556777778888888888888776
No 116
>KOG1127|consensus
Probab=37.60 E-value=1.3e+02 Score=32.37 Aligned_cols=53 Identities=19% Similarity=0.038 Sum_probs=48.6
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCC
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKN 123 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~ 123 (201)
-+-.|+-.++--+.-+|++...|.-.=|.|.++|.|.-|+++..+|..++|+|
T Consensus 577 n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 577 NLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred chhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 35677777888888899999999999999999999999999999999999987
No 117
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=35.89 E-value=65 Score=21.69 Aligned_cols=49 Identities=20% Similarity=0.078 Sum_probs=34.2
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhc
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWAL 119 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~i 119 (201)
-+++|+...+-+-.-.+.-+.++.-.-.||.+.|++=.|++.+.++.+|
T Consensus 27 ~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 27 YYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4445555433333333445677777889999999999999999988665
No 118
>KOG1129|consensus
Probab=35.84 E-value=1.7e+02 Score=27.95 Aligned_cols=90 Identities=19% Similarity=0.079 Sum_probs=64.9
Q ss_pred cchhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q psy7864 61 IPDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFIEQM 140 (201)
Q Consensus 61 ~GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v~~~ 140 (201)
+|.=+++- --+-+|.|+|+--++ ....++|.++--.||.|-+.+.-||.-+......=|.+..+..-+.|...++...
T Consensus 229 ~gkCylrL-gm~r~AekqlqssL~-q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 229 MGKCYLRL-GMPRRAEKQLQSSLT-QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHh-cChhhhHHHHHHHhh-cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 34444432 245678888887665 5568999999999999999999999999998888899887776667776666444
Q ss_pred hCCCCCCChHHHHHHh
Q psy7864 141 KGAEGDVHPAVWEVLK 156 (201)
Q Consensus 141 ~~~~~~~~~~V~~Vl~ 156 (201)
.+ .-..-+.|++
T Consensus 307 ~~----a~~lYk~vlk 318 (478)
T KOG1129|consen 307 ED----ALQLYKLVLK 318 (478)
T ss_pred HH----HHHHHHHHHh
Confidence 33 2334445554
No 119
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=35.46 E-value=70 Score=26.62 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=26.2
Q ss_pred hHh-HhHHhHhHhhhccchhHHHHHHHHHhhcC
Q psy7864 89 RIE-THLMAFEIYFRRQKPLLMLQSVKRAWALD 120 (201)
Q Consensus 89 ~ie-t~llaFEVy~Rk~K~LLaLqaL~~a~~id 120 (201)
++. .|..-+||.+.+|+++-||+.++..+.++
T Consensus 87 RL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~ 119 (167)
T PF07035_consen 87 RLGTAYEEIIEVLLSKGQVLEALRYARQYHKVD 119 (167)
T ss_pred HhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc
Confidence 445 67788999999999999999998865553
No 120
>PLN03077 Protein ECB2; Provisional
Probab=32.38 E-value=1.4e+02 Score=30.05 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=20.4
Q ss_pred cchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 104 QKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 104 ~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
+..=++-.+.+++..++|+++..|+.+...+.
T Consensus 671 ~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 671 RHVELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 33334444555666778888888887776553
No 121
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=31.65 E-value=58 Score=19.45 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=13.8
Q ss_pred HHHHhhcCCCCchHHHHHHHHHH
Q psy7864 113 VKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 113 L~~a~~id~~~P~lh~~~vrf~~ 135 (201)
..+|..++|+|+..+..+-.+..
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~ 24 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYL 24 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHH
Confidence 35566666666666666555544
No 122
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=31.51 E-value=1.4e+02 Score=29.32 Aligned_cols=64 Identities=9% Similarity=0.084 Sum_probs=46.6
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
=+++|.+|+.-.- +.| +..+|..--..|.+.|++=++.++...+..++|+++..+.+++..+..
T Consensus 477 ~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~ 540 (697)
T PLN03081 477 LLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS 540 (697)
T ss_pred CHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh
Confidence 3778877765321 223 345677777777778888888888888888999998888888876644
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=31.30 E-value=88 Score=28.05 Aligned_cols=55 Identities=11% Similarity=0.004 Sum_probs=46.4
Q ss_pred HHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHH
Q psy7864 73 EQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLH 127 (201)
Q Consensus 73 eeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh 127 (201)
++....+.|+....|+..+.+..-=---+|.|.|-.|+.-+.+|..++|+++.+|
T Consensus 83 ~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~ 137 (257)
T COG5010 83 DSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAW 137 (257)
T ss_pred cchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhh
Confidence 3677888998888999888886555566899999999999999999999997664
No 124
>KOG0624|consensus
Probab=31.19 E-value=1.5e+02 Score=28.37 Aligned_cols=65 Identities=15% Similarity=0.155 Sum_probs=58.6
Q ss_pred cchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHH
Q psy7864 69 EEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRL 133 (201)
Q Consensus 69 ~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf 133 (201)
+.-+.+|+.-|.-.+++.|+++++.+=-.|-|+-..-|--|+..-..|..+|++|..+-+-+-+=
T Consensus 320 d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~A 384 (504)
T KOG0624|consen 320 DEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERA 384 (504)
T ss_pred cCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999998876554443
No 125
>KOG3824|consensus
Probab=31.14 E-value=90 Score=29.48 Aligned_cols=54 Identities=17% Similarity=0.112 Sum_probs=42.6
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCc
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNP 124 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P 124 (201)
-+|.|++++.--+.++|++.+.-+--=++----+.+++|=||--+|..|+|.|.
T Consensus 131 k~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 131 KLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 578899999999999999988755333333334678999999999999999883
No 126
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=30.56 E-value=1e+02 Score=16.95 Aligned_cols=32 Identities=9% Similarity=0.050 Sum_probs=22.9
Q ss_pred HhHHhHhHhhhccchhHHHHHHHHHhhcCCCC
Q psy7864 92 THLMAFEIYFRRQKPLLMLQSVKRAWALDPKN 123 (201)
Q Consensus 92 t~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~ 123 (201)
++...-.+|.+.|.+-.|++.+.+...--|+|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 34445567778888888888888877766654
No 127
>PF08572 PRP3: pre-mRNA processing factor 3 (PRP3); InterPro: IPR013881 Pre-mRNA processing factor 3 (PRP3) is a U4/U6-associated splicing factor. The human PRP3 has been implicated in autosomal retinitis pigmentosa [].
Probab=29.87 E-value=59 Score=28.31 Aligned_cols=16 Identities=38% Similarity=0.546 Sum_probs=12.2
Q ss_pred CCHHHHHHhHHHHHHH
Q psy7864 2 LLPSERKKLLNKQKKA 17 (201)
Q Consensus 2 ls~~E~KKlr~Kqrka 17 (201)
||..|.||||.-.|++
T Consensus 141 LTkkErKKlRr~rR~e 156 (223)
T PF08572_consen 141 LTKKERKKLRRQRRQE 156 (223)
T ss_pred cChHHHHHHHHHHHHH
Confidence 7899999999555543
No 128
>KOG1173|consensus
Probab=29.46 E-value=1.6e+02 Score=29.45 Aligned_cols=61 Identities=23% Similarity=0.244 Sum_probs=51.5
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCL 130 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~ 130 (201)
+-.++|+.+.+--+.++|++..||...-=||.-.|++=.|.-.+..|..|+|++-..-+|+
T Consensus 469 ~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred hhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 4678999999999999999999999666689999999999999999999999885554443
No 129
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.46 E-value=4.4e+02 Score=23.66 Aligned_cols=75 Identities=15% Similarity=0.086 Sum_probs=57.8
Q ss_pred hccccchHHHHHHhHHHHHHH--ccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q psy7864 65 LAKTEEPLEQAVKFLSPLQLL--AKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFIEQ 139 (201)
Q Consensus 65 L~~~~dPLeeA~KfL~pL~~~--a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v~~ 139 (201)
|+...|-=+-...|...+..| ++---.+|.+-=|.|+++|+|--|-....++.+=-|.||+.-+.++++-.....
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~ 227 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR 227 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 444566444445677777777 333557778888999999999999999999999899999998888888766533
No 130
>PF12487 DUF3703: Protein of unknown function (DUF3703) ; InterPro: IPR022172 This family of proteins is found in bacteria. Proteins in this family are typically between 113 and 135 amino acids in length.
Probab=27.16 E-value=1.4e+02 Score=23.50 Aligned_cols=41 Identities=22% Similarity=0.180 Sum_probs=32.4
Q ss_pred HhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHH
Q psy7864 90 IETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCL 130 (201)
Q Consensus 90 iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~ 130 (201)
++.-+-.|.-.++.+.+-.+.+.|.+||=|.=.+|..|.++
T Consensus 9 ~~~el~~a~~a~~~~~~~~aw~hLErAHIlgQ~~~~~H~~~ 49 (112)
T PF12487_consen 9 YDAELEAAREALAAGDLQQAWRHLERAHILGQPYPWLHTRV 49 (112)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhHHhcCCchhHHHHH
Confidence 34445566677788999999999999999988888777553
No 131
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=25.85 E-value=3e+02 Score=20.98 Aligned_cols=64 Identities=14% Similarity=0.004 Sum_probs=45.1
Q ss_pred HHHHHhHHHHHHHccch---HhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 73 EQAVKFLSPLQLLAKDR---IETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 73 eeA~KfL~pL~~~a~~~---iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
..+...+.-|..-.|+. ..+++..-.+++..|+|=-|...+..+..-.|+...--...+++...
T Consensus 28 ~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~ 94 (145)
T PF09976_consen 28 AKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARI 94 (145)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 44555677777777776 67777788999999999999999999887665553333344444433
No 132
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=25.75 E-value=1.6e+02 Score=28.46 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=34.5
Q ss_pred ccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchH
Q psy7864 86 AKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTL 126 (201)
Q Consensus 86 a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~l 126 (201)
.|+..+.|.--=-+|+..|.|=-|+.++.+|..|+|+++..
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA 111 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEA 111 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH
Confidence 57778888744447788999999999999999999999854
No 133
>KOG2002|consensus
Probab=25.68 E-value=3.4e+02 Score=28.92 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCC-chH----HHHHHH----------HHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKN-PTL----HTCLIR----------LALF 136 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~-P~l----h~~~vr----------f~~~ 136 (201)
++.|..-+.-.+.-+|++|-.-+--.-|.+-||.|.-||+--+.+..|+|.. |++ .-|+.. |.++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Q ss_pred HHhhhCCCCCCChHHHHHH
Q psy7864 137 IEQMKGAEGDVHPAVWEVL 155 (201)
Q Consensus 137 v~~~~~~~~~~~~~V~~Vl 155 (201)
+ . ++|.+...+
T Consensus 226 l----q----Ldp~~v~al 236 (1018)
T KOG2002|consen 226 L----Q----LDPTCVSAL 236 (1018)
T ss_pred H----h----cChhhHHHH
No 134
>KOG4626|consensus
Probab=25.13 E-value=4.8e+02 Score=27.10 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=48.0
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCC
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPK 122 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~ 122 (201)
-+++|..|..--+++.|.--++|.=---||-.+|++--|+-|-+.|.+|+|.
T Consensus 369 ~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~ 420 (966)
T KOG4626|consen 369 KIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT 420 (966)
T ss_pred cchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch
Confidence 5789999999999999999999988888999999999999999999999995
No 135
>KOG1174|consensus
Probab=24.78 E-value=2.6e+02 Score=27.42 Aligned_cols=65 Identities=14% Similarity=0.054 Sum_probs=51.9
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
=|.|-||+.-=+...|+++.+-.+-.|+-.|.|++=-++.-|.++..+-| +-.||+-+-.|+.++
T Consensus 420 rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 420 REKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQ 484 (564)
T ss_pred HHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHh
Confidence 47888999988888999999999999999999998888777777665544 556787777777665
No 136
>PF07340 Herpes_IE1: Cytomegalovirus IE1 protein; InterPro: IPR010855 Expression from a human cytomegalovirus early promoter (E1.7) has been shown to be activated in trans by the IE2 gene product. Although the IE1 gene product alone had no effect on this early viral promoter, maximal early promoter activity was detected when both IE1 and IE2 gene products were present []. The IE1 protein from cytomegalovirus is also known as UL123.; GO: 0050792 regulation of viral reproduction, 0042025 host cell nucleus
Probab=24.58 E-value=82 Score=29.81 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=19.2
Q ss_pred hhccccchHHHHHHhHHHHHHH
Q psy7864 64 KLAKTEEPLEQAVKFLSPLQLL 85 (201)
Q Consensus 64 kL~~~~dPLeeA~KfL~pL~~~ 85 (201)
|-.+.+||...|..||.-++.-
T Consensus 22 k~pr~e~pv~~A~~fLek~l~~ 43 (392)
T PF07340_consen 22 KMPRPEDPVTRAVQFLEKMLAD 43 (392)
T ss_pred CCCCCCChHHHHHHHHHHHHHH
Confidence 7888899999999999988753
No 137
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=24.12 E-value=2.6e+02 Score=25.01 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=35.0
Q ss_pred HHHccchHhHhH--HhHhHhhh-------ccchh---HHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 83 QLLAKDRIETHL--MAFEIYFR-------RQKPL---LMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 83 ~~~a~~~iet~l--laFEVy~R-------k~K~L---LaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
..-.|.+|++|+ +.|+=-+- ..... .-|--|.+|.+-+|+++.|+.+.++....+
T Consensus 12 v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~ 78 (321)
T PF08424_consen 12 VRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKV 78 (321)
T ss_pred HHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 344788888887 44543331 11122 223346677777999999999988887666
No 138
>KOG0547|consensus
Probab=23.95 E-value=2e+02 Score=28.65 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchH--HHHHHHH
Q psy7864 74 QAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTL--HTCLIRL 133 (201)
Q Consensus 74 eA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~l--h~~~vrf 133 (201)
.|+.-+.-...+-|..+.-++---=+|+-++.-..+.+-+..|..|||+||++ |+-=++|
T Consensus 344 ~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF 405 (606)
T ss_pred hhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
No 139
>PRK15331 chaperone protein SicA; Provisional
Probab=23.92 E-value=2.8e+02 Score=23.15 Aligned_cols=66 Identities=9% Similarity=0.038 Sum_probs=51.2
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFIE 138 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v~ 138 (201)
-++|+-+..-=-.+++++.....-+-+.|+--++.-.|..|+..+.. .|.++.|+.+.-....++.
T Consensus 87 y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~ 152 (165)
T PRK15331 87 FQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALK 152 (165)
T ss_pred HHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHH
Confidence 44555555555556677778888888999999999999999998877 6888888888777776663
No 140
>PF05186 Dpy-30: Dpy-30 motif; InterPro: IPR007858 This motif is about 40 residues long and is probably formed of two alpha-helices. It is found in the Dpy-30 proteins, hence the motifs name. Dpy-30 from Caenorhabditis elegans is an essential component of dosage compensation machinery and loss of dpy-30 activity results in XX-specific lethality; in XO animals, Dpy-30 is required for developmental processes other than dosage compensation []. In yeast, the homologue of DPY-30, Saf19p, functions as part of the Set1 complex that is necessary for the methylation of histone H3 at lysine residue 4; Set1 is a key part of epigenetic developmental control []. There is also a human homologue of Dpy-30 []. This Dpy-30 region may be a dimerisation motif analogous that found in the cAMP-dependent protein kinase regulator, type II PKA, R subunit IPR003117 from INTERPRO.; PDB: 3G36_D.
Probab=23.59 E-value=22 Score=23.05 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=25.3
Q ss_pred ChHHHHHHhhhhccCCCC--CCHHHHHHHHHHHcC
Q psy7864 148 HPAVWEVLKSGLEPIMGS--KPALELNASYLKENA 180 (201)
Q Consensus 148 ~~~V~~Vl~~e~~~l~~~--~~l~~~N~~fl~~h~ 180 (201)
...|..+|.+++..+... .|+..|=.+||-+|+
T Consensus 7 ~~~v~p~L~~gL~~l~~~rP~DPi~~La~~Ll~~~ 41 (42)
T PF05186_consen 7 KETVGPVLTEGLAELAKERPEDPIEFLAEYLLKHN 41 (42)
T ss_dssp HHHTHHHHHHHHHHHHHH--SSHHHHHHHHHHHHG
T ss_pred HHHhHHHHHHHHHHHHHHCCCChHHHHHHHHHHhC
Confidence 356777888888776633 689999999998775
No 141
>KOG4234|consensus
Probab=23.16 E-value=2.7e+02 Score=24.83 Aligned_cols=69 Identities=20% Similarity=0.112 Sum_probs=56.3
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFIE 138 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v~ 138 (201)
+-.+.|++=|.--.++.|.++-+-.--.+.|-.-.||=-||--.+....+||+.....+.++|+-..+.
T Consensus 148 ~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 148 RKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN 216 (271)
T ss_pred hhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence 456777777888888888888777776778877789999999999999999998888888888876653
No 142
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=22.93 E-value=3.4e+02 Score=23.47 Aligned_cols=69 Identities=20% Similarity=0.131 Sum_probs=49.1
Q ss_pred cchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCC--CCc-hHHHHHHHHHHHHHhh
Q psy7864 69 EEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDP--KNP-TLHTCLIRLALFIEQM 140 (201)
Q Consensus 69 ~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~--~~P-~lh~~~vrf~~~v~~~ 140 (201)
+.-|+.+.||++-|...+..-|++-- +.+....+|...|+.+..-..=|+ +++ .+..|+.+|...+++.
T Consensus 8 e~~l~~t~~~ik~liK~c~~li~A~k---~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el 79 (207)
T cd07634 8 EIELERTNKFIKELIKDGSLLIGALR---NLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAV 79 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999987777643 455666788888887775322244 233 5888999888776553
No 143
>KOG1126|consensus
Probab=22.18 E-value=1.8e+02 Score=29.30 Aligned_cols=56 Identities=25% Similarity=0.230 Sum_probs=49.0
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCch
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPT 125 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~ 125 (201)
.=.++|+.-|.-|.+++|+.--+|.+-=.||.|.|+.=+|+.=..-|..+||..-.
T Consensus 571 ~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 571 GRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred cchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 34689999999999999999999999999999999999999888888888886544
No 144
>KOG2003|consensus
Probab=21.90 E-value=3.4e+02 Score=27.12 Aligned_cols=64 Identities=14% Similarity=0.060 Sum_probs=37.4
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhH---hhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEI---YFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEV---y~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
-|+.|..|.+--++......++- |-| |-..|.+-.||.|..++|.|--++..+.+++...+..+
T Consensus 505 d~dka~~~ykeal~ndasc~eal---fniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~l 571 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEAL---FNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELL 571 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHH---HHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 46777777766665544433332 222 22346667777777777777666666666665555443
No 145
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=21.77 E-value=4e+02 Score=23.17 Aligned_cols=98 Identities=8% Similarity=0.122 Sum_probs=66.7
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhh-ccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhCCCCCCChH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFR-RQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFIEQMKGAEGDVHPA 150 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~R-k~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v~~~~~~~~~~~~~ 150 (201)
++.|-+.+.--....+-..++|.....+.++ .+..--|.+-..++.+.-|+++.+-.+-|.|...+. + ...
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~---d-----~~~ 88 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN---D-----INN 88 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT---------HHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC---c-----HHH
Confidence 4555555554444444567778877777666 445555888888999999999999999999986541 1 357
Q ss_pred HHHHHhhhhccCCCCCCHHHHHHHHHH
Q psy7864 151 VWEVLKSGLEPIMGSKPALELNASYLK 177 (201)
Q Consensus 151 V~~Vl~~e~~~l~~~~~l~~~N~~fl~ 177 (201)
++.|++..+..+..+.....+...|++
T Consensus 89 aR~lfer~i~~l~~~~~~~~iw~~~i~ 115 (280)
T PF05843_consen 89 ARALFERAISSLPKEKQSKKIWKKFIE 115 (280)
T ss_dssp HHHHHHHHCCTSSCHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 899999999887655535667777763
No 146
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=20.17 E-value=1.4e+02 Score=28.16 Aligned_cols=60 Identities=8% Similarity=0.186 Sum_probs=42.3
Q ss_pred HHHHHhHHHHHHHccchHhHhHH--hHhHhhhccchhHHHHH-HHHHhhcCCCCchHHHHHHHHH
Q psy7864 73 EQAVKFLSPLQLLAKDRIETHLM--AFEIYFRRQKPLLMLQS-VKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 73 eeA~KfL~pL~~~a~~~iet~ll--aFEVy~Rk~K~LLaLqa-L~~a~~id~~~P~lh~~~vrf~ 134 (201)
.+--+.+.-+++..|.+++-|.. +||..+- --+-+.|+ ..++.+.+|++|.+-.--+||-
T Consensus 124 ~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~--ani~s~Ra~f~~glR~N~~~p~iw~eyfr~E 186 (435)
T COG5191 124 GEMKNIFAECLTKHPLNVDLWIYCCAFELFEI--ANIESSRAMFLKGLRMNSRSPRIWIEYFRME 186 (435)
T ss_pred HHHHHHHHHHHhcCCCCceeeeeeccchhhhh--ccHHHHHHHHHhhhccCCCCchHHHHHHHHH
Confidence 34445667788889999999996 4554432 23455555 4678889999999977777664
No 147
>KOG4162|consensus
Probab=20.16 E-value=2e+02 Score=29.73 Aligned_cols=55 Identities=20% Similarity=0.179 Sum_probs=40.9
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTL 126 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~l 126 (201)
|.++--||.-..++.|.+-+.|.--=+|...+|-.=.|.-|.-.|..+++++|.+
T Consensus 736 la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 736 LAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence 4444447777777788888888877778877777777778888887777777754
No 148
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=20.11 E-value=5.8e+02 Score=24.20 Aligned_cols=123 Identities=13% Similarity=0.151 Sum_probs=81.4
Q ss_pred ccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCC-----chHHHHHHHHH------HH
Q psy7864 68 TEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKN-----PTLHTCLIRLA------LF 136 (201)
Q Consensus 68 ~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~-----P~lh~~~vrf~------~~ 136 (201)
.++-.+.|+.+|.--++-+|+++.+-+.-=.|++++|.|--|..++.+...-||+= |.|..|--.+- ..
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 192 ASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45678899999999999999999999999999999999999999999888777763 33333432221 11
Q ss_pred HHhhhCCCCCCChHHHHHHhhhhccCCCCCCHHHHHHHHHHHcCC-ChHHHHHHHHh
Q psy7864 137 IEQMKGAEGDVHPAVWEVLKSGLEPIMGSKPALELNASYLKENAS-HLPALLCEVAL 192 (201)
Q Consensus 137 v~~~~~~~~~~~~~V~~Vl~~e~~~l~~~~~l~~~N~~fl~~h~~-S~~h~laaa~~ 192 (201)
+....+ ......+.-|+.+-....-|...+.++-.+-|.+|.+ -.-||+-...+
T Consensus 272 L~~~~~--~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 272 LRRAME--TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHH--ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhh
Confidence 111001 0122334444444334444666777777777888776 35577765443
Done!