Query psy7864
Match_columns 201
No_of_seqs 133 out of 166
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 20:47:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ga2_A E3 SUMO-protein ligase 97.6 0.00064 2.2E-08 51.3 10.9 83 71-160 46-128 (150)
2 1hxi_A PEX5, peroxisome target 97.4 0.0007 2.4E-08 49.5 8.3 75 62-137 24-98 (121)
3 3gyz_A Chaperone protein IPGC; 97.3 0.00089 3E-08 51.8 8.4 67 71-137 51-117 (151)
4 2xcb_A PCRH, regulatory protei 97.3 0.00083 2.8E-08 49.6 7.8 67 70-136 32-98 (142)
5 2vgx_A Chaperone SYCD; alterna 97.1 0.0019 6.4E-08 48.8 7.7 66 71-136 36-101 (148)
6 1na3_A Designed protein CTPR2; 97.1 0.0037 1.3E-07 41.2 8.3 64 71-134 24-87 (91)
7 4gco_A Protein STI-1; structur 97.0 0.0014 4.7E-08 48.3 6.4 55 72-126 29-83 (126)
8 2kc7_A BFR218_protein; tetratr 97.0 0.005 1.7E-07 41.9 8.5 57 71-127 15-72 (99)
9 4ga2_A E3 SUMO-protein ligase 96.9 0.0024 8.2E-08 48.1 7.1 72 62-134 72-144 (150)
10 2pl2_A Hypothetical conserved 96.9 0.016 5.3E-07 45.8 12.0 74 62-136 12-85 (217)
11 4gco_A Protein STI-1; structur 96.9 0.0037 1.3E-07 45.9 7.6 70 62-132 54-123 (126)
12 3upv_A Heat shock protein STI1 96.9 0.0041 1.4E-07 44.2 7.6 74 62-136 11-84 (126)
13 1elw_A TPR1-domain of HOP; HOP 96.8 0.0071 2.4E-07 40.8 8.1 61 72-132 54-114 (118)
14 3sz7_A HSC70 cochaperone (SGT) 96.8 0.0045 1.5E-07 46.3 7.5 64 72-135 27-90 (164)
15 3rkv_A Putative peptidylprolyl 96.7 0.0059 2E-07 45.5 7.9 69 71-139 78-147 (162)
16 2dba_A Smooth muscle cell asso 96.7 0.0062 2.1E-07 43.3 7.6 62 71-132 43-107 (148)
17 3urz_A Uncharacterized protein 96.7 0.0052 1.8E-07 48.3 7.8 60 72-131 70-129 (208)
18 3sz7_A HSC70 cochaperone (SGT) 96.7 0.0063 2.2E-07 45.4 7.8 67 71-137 60-128 (164)
19 3q49_B STIP1 homology and U bo 96.7 0.007 2.4E-07 42.9 7.6 66 71-136 24-89 (137)
20 2vyi_A SGTA protein; chaperone 96.7 0.01 3.6E-07 40.6 8.3 64 72-135 62-125 (131)
21 2l6j_A TPR repeat-containing p 96.6 0.013 4.3E-07 39.9 8.4 52 72-123 20-71 (111)
22 3ieg_A DNAJ homolog subfamily 96.6 0.0095 3.3E-07 48.0 8.9 67 71-137 287-353 (359)
23 1elw_A TPR1-domain of HOP; HOP 96.6 0.0081 2.8E-07 40.5 7.2 66 71-136 19-84 (118)
24 3urz_A Uncharacterized protein 96.6 0.0067 2.3E-07 47.7 7.6 39 96-134 60-98 (208)
25 2vyi_A SGTA protein; chaperone 96.6 0.0098 3.4E-07 40.7 7.6 66 71-136 27-92 (131)
26 2vgx_A Chaperone SYCD; alterna 96.5 0.01 3.5E-07 44.6 7.8 69 71-139 70-138 (148)
27 1na0_A Designed protein CTPR3; 96.5 0.019 6.4E-07 38.9 8.3 60 72-131 59-118 (125)
28 2kat_A Uncharacterized protein 96.4 0.0053 1.8E-07 43.1 5.5 63 74-136 3-65 (115)
29 3upv_A Heat shock protein STI1 96.4 0.0069 2.4E-07 43.0 6.1 65 71-135 53-123 (126)
30 2xcb_A PCRH, regulatory protei 96.4 0.011 3.9E-07 43.3 7.2 75 62-137 59-133 (142)
31 2xev_A YBGF; tetratricopeptide 96.3 0.028 9.7E-07 39.2 8.8 56 71-126 17-75 (129)
32 2pl2_A Hypothetical conserved 96.3 0.052 1.8E-06 42.8 11.1 72 62-134 46-128 (217)
33 3mkr_A Coatomer subunit epsilo 96.3 0.022 7.6E-07 47.6 9.4 85 70-161 180-264 (291)
34 2lni_A Stress-induced-phosphop 96.3 0.013 4.4E-07 40.6 6.7 65 71-135 31-95 (133)
35 2lni_A Stress-induced-phosphop 96.2 0.019 6.7E-07 39.7 7.6 65 70-134 64-128 (133)
36 3k9i_A BH0479 protein; putativ 96.2 0.0046 1.6E-07 44.0 4.3 66 72-137 6-74 (117)
37 3vtx_A MAMA; tetratricopeptide 96.2 0.017 5.8E-07 43.2 7.6 64 72-135 89-152 (184)
38 2kck_A TPR repeat; tetratricop 96.2 0.029 1E-06 37.4 8.0 65 70-134 20-86 (112)
39 2e2e_A Formate-dependent nitri 96.2 0.023 7.9E-07 42.5 8.2 59 73-131 98-156 (177)
40 1na0_A Designed protein CTPR3; 96.2 0.024 8.1E-07 38.4 7.6 66 70-135 23-88 (125)
41 2fbn_A 70 kDa peptidylprolyl i 96.2 0.026 8.8E-07 43.3 8.6 70 71-140 103-172 (198)
42 1a17_A Serine/threonine protei 96.2 0.021 7.1E-07 41.3 7.5 64 72-135 29-92 (166)
43 3vtx_A MAMA; tetratricopeptide 96.1 0.18 6.3E-06 37.4 12.9 62 72-133 21-82 (184)
44 2dba_A Smooth muscle cell asso 96.1 0.025 8.5E-07 40.0 7.6 63 71-133 80-142 (148)
45 4i17_A Hypothetical protein; T 96.1 0.027 9.1E-07 43.8 8.3 62 71-132 57-118 (228)
46 2xev_A YBGF; tetratricopeptide 96.0 0.034 1.2E-06 38.8 8.1 73 62-135 46-121 (129)
47 2fo7_A Synthetic consensus TPR 95.9 0.044 1.5E-06 37.2 7.8 64 71-134 50-113 (136)
48 3k9i_A BH0479 protein; putativ 95.8 0.018 6.2E-07 40.7 5.9 58 71-128 42-99 (117)
49 2fo7_A Synthetic consensus TPR 95.8 0.045 1.5E-06 37.2 7.6 63 72-134 17-79 (136)
50 2h6f_A Protein farnesyltransfe 95.7 0.073 2.5E-06 47.0 10.7 65 72-136 113-178 (382)
51 3uq3_A Heat shock protein STI1 95.7 0.035 1.2E-06 42.6 7.6 60 72-131 155-214 (258)
52 2e2e_A Formate-dependent nitri 95.7 0.039 1.3E-06 41.2 7.6 64 70-133 24-87 (177)
53 4gcn_A Protein STI-1; structur 95.7 0.019 6.7E-07 41.8 5.8 69 62-131 15-83 (127)
54 2vq2_A PILW, putative fimbrial 95.7 0.13 4.6E-06 38.4 10.5 64 71-134 23-86 (225)
55 3qky_A Outer membrane assembly 95.6 0.15 5.1E-06 40.5 11.2 65 62-127 22-89 (261)
56 1hxi_A PEX5, peroxisome target 95.6 0.018 6.2E-07 41.7 5.2 64 62-126 58-121 (121)
57 1a17_A Serine/threonine protei 95.6 0.069 2.4E-06 38.4 8.3 59 71-129 62-120 (166)
58 3as5_A MAMA; tetratricopeptide 95.5 0.055 1.9E-06 39.1 7.6 65 70-134 56-120 (186)
59 1xnf_A Lipoprotein NLPI; TPR, 95.5 0.05 1.7E-06 42.4 7.8 63 72-134 59-121 (275)
60 3ma5_A Tetratricopeptide repea 95.5 0.012 4.1E-07 41.1 3.7 65 62-127 14-78 (100)
61 2kck_A TPR repeat; tetratricop 95.5 0.041 1.4E-06 36.6 6.3 54 71-124 55-111 (112)
62 3ieg_A DNAJ homolog subfamily 95.4 0.061 2.1E-06 43.2 8.2 67 70-136 134-200 (359)
63 1elr_A TPR2A-domain of HOP; HO 95.4 0.079 2.7E-06 36.1 7.7 67 70-137 52-125 (131)
64 3cv0_A Peroxisome targeting si 95.4 0.27 9.1E-06 39.0 11.9 65 71-135 36-100 (327)
65 2q7f_A YRRB protein; TPR, prot 95.4 0.028 9.6E-07 43.1 5.9 66 71-136 140-205 (243)
66 3rkv_A Putative peptidylprolyl 95.4 0.052 1.8E-06 40.2 7.2 74 62-136 18-109 (162)
67 2ho1_A Type 4 fimbrial biogene 95.3 0.059 2E-06 41.8 7.7 63 72-134 157-219 (252)
68 2y4t_A DNAJ homolog subfamily 95.3 0.063 2.1E-06 45.4 8.4 67 71-137 310-376 (450)
69 3as5_A MAMA; tetratricopeptide 95.3 0.29 9.8E-06 35.1 10.8 64 72-135 24-87 (186)
70 2q7f_A YRRB protein; TPR, prot 95.3 0.057 2E-06 41.3 7.3 121 71-192 106-236 (243)
71 1elr_A TPR2A-domain of HOP; HO 95.2 0.032 1.1E-06 38.2 5.2 53 71-123 19-71 (131)
72 1fch_A Peroxisomal targeting s 95.2 0.22 7.4E-06 40.6 11.1 74 62-136 71-144 (368)
73 1p5q_A FKBP52, FK506-binding p 95.2 0.073 2.5E-06 45.3 8.5 67 71-137 211-277 (336)
74 2r5s_A Uncharacterized protein 95.2 0.067 2.3E-06 40.4 7.5 60 71-131 21-80 (176)
75 1zu2_A Mitochondrial import re 95.2 0.038 1.3E-06 44.2 6.2 65 70-135 16-91 (158)
76 3hym_B Cell division cycle pro 95.1 0.54 1.8E-05 37.3 12.9 66 71-136 71-137 (330)
77 2h6f_A Protein farnesyltransfe 95.1 0.061 2.1E-06 47.5 7.9 63 72-134 148-210 (382)
78 3gyz_A Chaperone protein IPGC; 95.1 0.067 2.3E-06 41.0 7.1 70 62-133 77-146 (151)
79 3hym_B Cell division cycle pro 95.0 0.047 1.6E-06 43.5 6.4 65 70-134 250-314 (330)
80 4eqf_A PEX5-related protein; a 95.0 0.074 2.5E-06 43.9 7.8 66 71-136 80-145 (365)
81 2vq2_A PILW, putative fimbrial 95.0 0.078 2.7E-06 39.7 7.3 63 71-133 92-156 (225)
82 3q49_B STIP1 homology and U bo 95.0 0.062 2.1E-06 37.8 6.4 64 71-134 58-126 (137)
83 3uq3_A Heat shock protein STI1 95.0 0.044 1.5E-06 42.1 6.0 61 71-131 188-254 (258)
84 4i17_A Hypothetical protein; T 94.9 0.071 2.4E-06 41.3 7.0 74 62-136 14-88 (228)
85 2kat_A Uncharacterized protein 94.9 0.097 3.3E-06 36.4 7.0 67 71-137 34-102 (115)
86 1w3b_A UDP-N-acetylglucosamine 94.9 0.52 1.8E-05 39.2 12.7 64 71-134 48-111 (388)
87 2r5s_A Uncharacterized protein 94.8 0.12 4.1E-06 38.9 7.8 64 74-137 92-157 (176)
88 4eqf_A PEX5-related protein; a 94.8 0.099 3.4E-06 43.2 7.9 63 72-134 229-291 (365)
89 3cv0_A Peroxisome targeting si 94.8 0.096 3.3E-06 41.7 7.6 66 69-134 151-216 (327)
90 2ho1_A Type 4 fimbrial biogene 94.8 0.068 2.3E-06 41.5 6.5 60 70-129 189-248 (252)
91 1fch_A Peroxisomal targeting s 94.7 0.11 3.8E-06 42.4 8.1 62 71-132 196-259 (368)
92 3qou_A Protein YBBN; thioredox 94.6 0.25 8.4E-06 40.8 10.0 51 84-134 111-161 (287)
93 1w3b_A UDP-N-acetylglucosamine 94.6 0.39 1.4E-05 39.9 11.2 58 73-130 186-243 (388)
94 3qou_A Protein YBBN; thioredox 94.6 0.11 3.8E-06 42.9 7.7 65 73-137 202-268 (287)
95 2y4t_A DNAJ homolog subfamily 94.5 0.9 3.1E-05 38.1 13.4 60 72-131 76-138 (450)
96 1kt0_A FKBP51, 51 kDa FK506-bi 94.5 0.11 3.7E-06 46.3 8.0 67 71-137 332-398 (457)
97 4gyw_A UDP-N-acetylglucosamine 94.5 0.093 3.2E-06 50.5 8.0 75 62-137 84-158 (723)
98 2c2l_A CHIP, carboxy terminus 94.5 0.11 3.8E-06 42.8 7.6 62 71-132 19-80 (281)
99 1ihg_A Cyclophilin 40; ppiase 94.5 0.11 3.7E-06 45.3 7.8 67 71-137 288-354 (370)
100 2if4_A ATFKBP42; FKBP-like, al 94.4 0.044 1.5E-06 46.8 5.1 64 72-135 246-309 (338)
101 4abn_A Tetratricopeptide repea 94.4 0.12 4.2E-06 46.0 8.2 68 70-137 235-305 (474)
102 1xnf_A Lipoprotein NLPI; TPR, 94.3 0.6 2E-05 36.2 11.1 67 69-135 18-88 (275)
103 4gyw_A UDP-N-acetylglucosamine 94.3 0.36 1.2E-05 46.5 11.6 63 72-134 25-87 (723)
104 2xpi_A Anaphase-promoting comp 94.2 0.092 3.1E-06 46.2 6.8 62 71-132 531-592 (597)
105 3bee_A Putative YFRE protein; 94.2 0.11 3.9E-06 36.9 6.1 66 62-127 13-80 (93)
106 3u4t_A TPR repeat-containing p 94.1 0.11 3.6E-06 40.7 6.3 69 62-131 81-149 (272)
107 1zu2_A Mitochondrial import re 94.0 0.15 5.2E-06 40.7 7.1 58 72-129 62-130 (158)
108 2fbn_A 70 kDa peptidylprolyl i 93.9 0.21 7.3E-06 38.0 7.6 65 72-136 54-134 (198)
109 3ma5_A Tetratricopeptide repea 93.8 0.11 3.9E-06 35.9 5.4 52 86-137 3-54 (100)
110 1hh8_A P67PHOX, NCF-2, neutrop 93.8 0.25 8.6E-06 37.3 7.8 54 71-124 52-105 (213)
111 2vsy_A XCC0866; transferase, g 93.7 0.55 1.9E-05 42.1 11.0 58 72-129 39-96 (568)
112 2ond_A Cleavage stimulation fa 93.6 0.99 3.4E-05 37.0 11.6 66 72-137 80-147 (308)
113 3fp2_A TPR repeat-containing p 93.6 1.1 3.7E-05 38.5 12.3 60 72-131 292-351 (537)
114 3mkr_A Coatomer subunit epsilo 93.6 0.19 6.6E-06 41.8 7.3 59 71-129 215-274 (291)
115 4abn_A Tetratricopeptide repea 93.4 0.18 6.1E-06 45.0 7.2 72 61-133 108-179 (474)
116 1wao_1 Serine/threonine protei 93.3 0.26 8.9E-06 44.3 8.3 73 62-135 13-85 (477)
117 1p5q_A FKBP52, FK506-binding p 93.3 0.23 7.9E-06 42.2 7.5 65 72-136 163-242 (336)
118 2vsy_A XCC0866; transferase, g 93.2 0.23 8E-06 44.6 7.7 74 62-136 64-137 (568)
119 3fp2_A TPR repeat-containing p 93.2 1.1 3.9E-05 38.4 11.8 65 71-136 258-322 (537)
120 2gw1_A Mitochondrial precursor 92.9 0.19 6.5E-06 42.8 6.3 66 70-136 429-494 (514)
121 2yhc_A BAMD, UPF0169 lipoprote 92.4 0.48 1.7E-05 37.1 7.8 68 70-137 110-194 (225)
122 2pzi_A Probable serine/threoni 92.3 1.9 6.4E-05 40.4 12.9 66 71-136 448-513 (681)
123 2gw1_A Mitochondrial precursor 92.3 0.73 2.5E-05 39.1 9.2 63 72-134 320-382 (514)
124 3qky_A Outer membrane assembly 92.1 0.62 2.1E-05 36.8 8.0 65 70-134 111-192 (261)
125 2v5f_A Prolyl 4-hydroxylase su 91.9 1.1 3.6E-05 31.6 8.4 65 72-136 21-92 (104)
126 2xpi_A Anaphase-promoting comp 91.8 0.39 1.3E-05 42.2 7.1 60 72-131 389-448 (597)
127 3u4t_A TPR repeat-containing p 91.8 1 3.5E-05 34.9 8.9 54 72-126 19-72 (272)
128 4g1t_A Interferon-induced prot 91.8 0.43 1.5E-05 40.6 7.2 64 70-133 227-290 (472)
129 2yhc_A BAMD, UPF0169 lipoprote 91.7 0.82 2.8E-05 35.7 8.3 55 72-126 20-77 (225)
130 1pc2_A Mitochondria fission pr 91.6 0.91 3.1E-05 36.0 8.5 67 62-128 39-109 (152)
131 2pzi_A Probable serine/threoni 91.1 1.6 5.5E-05 40.8 10.9 61 72-132 407-475 (681)
132 1kt0_A FKBP51, 51 kDa FK506-bi 90.7 0.57 1.9E-05 41.6 7.1 64 72-135 284-362 (457)
133 3dra_A Protein farnesyltransfe 90.6 1.1 3.8E-05 38.6 8.7 62 70-131 47-112 (306)
134 1wao_1 Serine/threonine protei 90.4 0.8 2.7E-05 41.1 7.9 71 62-133 47-117 (477)
135 1ihg_A Cyclophilin 40; ppiase 90.1 0.74 2.5E-05 40.0 7.2 64 72-135 239-318 (370)
136 2ond_A Cleavage stimulation fa 90.0 1.8 6.2E-05 35.4 9.2 63 72-134 150-213 (308)
137 2l6j_A TPR repeat-containing p 89.6 0.66 2.2E-05 31.0 5.2 48 89-136 3-50 (111)
138 1na3_A Designed protein CTPR2; 89.6 0.69 2.4E-05 29.8 5.2 49 87-135 6-54 (91)
139 2if4_A ATFKBP42; FKBP-like, al 88.8 1.2 4.1E-05 37.8 7.4 64 72-135 195-275 (338)
140 2ooe_A Cleavage stimulation fa 88.0 3.3 0.00011 36.5 10.0 66 69-135 25-90 (530)
141 2ooe_A Cleavage stimulation fa 87.7 3.2 0.00011 36.6 9.7 65 73-137 303-369 (530)
142 2c2l_A CHIP, carboxy terminus 86.4 0.42 1.4E-05 39.3 3.0 62 62-124 45-106 (281)
143 2hr2_A Hypothetical protein; a 85.6 0.9 3.1E-05 36.1 4.5 67 70-136 71-148 (159)
144 3dra_A Protein farnesyltransfe 85.3 2 6.7E-05 37.0 6.9 62 70-131 83-153 (306)
145 3edt_B KLC 2, kinesin light ch 84.8 1.7 5.8E-05 33.3 5.7 49 71-119 100-156 (283)
146 3nf1_A KLC 1, kinesin light ch 83.9 1.8 6E-05 33.9 5.5 49 71-119 126-182 (311)
147 1hh8_A P67PHOX, NCF-2, neutrop 83.9 3.2 0.00011 31.0 6.8 54 71-124 86-155 (213)
148 4g1t_A Interferon-induced prot 83.4 10 0.00034 32.0 10.4 61 71-131 153-216 (472)
149 3mv2_B Coatomer subunit epsilo 83.2 1.7 5.8E-05 38.0 5.6 52 70-121 114-167 (310)
150 3dss_A Geranylgeranyl transfer 82.6 3.4 0.00012 36.2 7.3 60 72-131 90-153 (331)
151 2hr2_A Hypothetical protein; a 82.2 8 0.00027 30.5 8.7 65 62-127 18-101 (159)
152 3q7a_A Farnesyltransferase alp 80.1 3.8 0.00013 36.3 6.7 52 73-124 71-123 (349)
153 1qqe_A Vesicular transport pro 80.0 2.5 8.5E-05 34.4 5.2 66 62-128 165-237 (292)
154 2kc7_A BFR218_protein; tetratr 79.3 2.8 9.5E-05 27.7 4.4 42 96-137 6-48 (99)
155 4gcn_A Protein STI-1; structur 78.9 4.9 0.00017 28.6 6.0 65 62-128 49-120 (127)
156 3edt_B KLC 2, kinesin light ch 78.9 9.4 0.00032 28.9 7.9 64 71-134 58-134 (283)
157 1dce_A Protein (RAB geranylger 77.2 5.7 0.00019 36.7 7.3 62 71-132 88-153 (567)
158 1dce_A Protein (RAB geranylger 76.3 5 0.00017 37.1 6.7 60 72-131 45-116 (567)
159 3o48_A Mitochondria fission 1 76.0 7.8 0.00027 30.2 6.7 63 64-126 49-114 (134)
160 3nf1_A KLC 1, kinesin light ch 72.9 6.6 0.00023 30.5 5.7 49 71-119 168-224 (311)
161 1nzn_A CGI-135 protein, fissio 72.6 6.7 0.00023 30.1 5.5 64 64-127 44-111 (126)
162 3ro2_A PINS homolog, G-protein 71.8 5 0.00017 31.1 4.7 49 71-119 20-72 (338)
163 3q7a_A Farnesyltransferase alp 71.5 11 0.00037 33.3 7.3 62 71-132 104-169 (349)
164 1qqe_A Vesicular transport pro 70.9 17 0.00057 29.4 7.9 56 71-126 133-194 (292)
165 3dss_A Geranylgeranyl transfer 70.8 7.4 0.00025 34.0 6.0 61 72-132 46-118 (331)
166 2ifu_A Gamma-SNAP; membrane fu 66.0 13 0.00046 30.2 6.4 53 72-125 171-229 (307)
167 3u64_A Protein TP_0956; tetrat 65.3 7.4 0.00025 34.2 4.8 56 71-126 219-277 (301)
168 4a1s_A PINS, partner of inscut 62.9 8.4 0.00029 31.7 4.5 49 71-119 63-115 (411)
169 3ro2_A PINS homolog, G-protein 61.7 10 0.00036 29.2 4.7 48 73-120 240-293 (338)
170 3sf4_A G-protein-signaling mod 60.3 14 0.00048 29.8 5.4 50 72-121 243-298 (406)
171 3sf4_A G-protein-signaling mod 60.1 11 0.00037 30.5 4.7 57 62-119 16-76 (406)
172 3bee_A Putative YFRE protein; 59.6 10 0.00035 26.4 3.9 42 86-127 2-46 (93)
173 1ouv_A Conserved hypothetical 59.1 36 0.0012 26.3 7.5 46 72-119 58-107 (273)
174 1y8m_A FIS1; mitochondria, unk 58.8 29 0.00098 27.3 6.7 61 65-126 49-113 (144)
175 3mv2_B Coatomer subunit epsilo 55.1 24 0.00083 30.5 6.3 68 68-137 190-268 (310)
176 3ly7_A Transcriptional activat 53.8 25 0.00085 31.5 6.3 60 69-129 290-349 (372)
177 4a1s_A PINS, partner of inscut 49.5 25 0.00084 28.8 5.3 49 71-119 101-155 (411)
178 4b4t_Q 26S proteasome regulato 47.6 32 0.0011 28.5 5.7 50 72-121 151-206 (434)
179 3ro3_A PINS homolog, G-protein 46.0 36 0.0012 22.9 5.0 49 72-120 65-119 (164)
180 2ifu_A Gamma-SNAP; membrane fu 45.1 37 0.0013 27.5 5.6 54 71-124 130-189 (307)
181 1ouv_A Conserved hypothetical 43.9 85 0.0029 24.2 7.4 46 72-119 130-179 (273)
182 3ro3_A PINS homolog, G-protein 43.5 36 0.0012 22.9 4.6 51 72-122 25-81 (164)
183 2qfc_A PLCR protein; TPR, HTH, 40.5 1.2E+02 0.0043 23.8 8.1 56 71-126 130-194 (293)
184 3ulq_A Response regulator aspa 38.5 57 0.0019 26.8 5.8 54 71-124 118-177 (383)
185 3q15_A PSP28, response regulat 38.4 1.4E+02 0.0047 24.5 8.2 51 72-122 238-293 (378)
186 3qww_A SET and MYND domain-con 37.7 1.2E+02 0.0042 26.9 8.3 68 72-139 314-394 (433)
187 2ki0_A DS119; beta-alpha-beta, 35.0 28 0.00095 20.8 2.4 14 3-16 13-26 (36)
188 3rjv_A Putative SEL1 repeat pr 34.7 1.1E+02 0.0037 23.2 6.6 48 72-121 69-120 (212)
189 3gw4_A Uncharacterized protein 33.7 1.3E+02 0.0044 21.4 7.8 49 71-119 41-95 (203)
190 3n71_A Histone lysine methyltr 31.6 1.7E+02 0.0059 26.4 8.3 53 87-139 348-405 (490)
191 3bu8_A Telomeric repeat-bindin 29.9 1.3E+02 0.0044 25.4 6.6 51 69-119 85-143 (235)
192 3u64_A Protein TP_0956; tetrat 29.7 2E+02 0.007 24.9 8.1 65 71-135 178-250 (301)
193 2ff4_A Probable regulatory pro 29.5 79 0.0027 27.4 5.5 89 89-179 170-258 (388)
194 3gw4_A Uncharacterized protein 28.6 1E+02 0.0035 22.0 5.2 49 72-120 82-137 (203)
195 3ulq_A Response regulator aspa 27.9 1.1E+02 0.0037 25.0 5.8 49 72-120 240-294 (383)
196 4gof_A Small glutamine-rich te 25.5 39 0.0013 22.1 2.1 19 108-126 32-50 (52)
197 3qwp_A SET and MYND domain-con 25.0 2E+02 0.0069 25.3 7.4 68 72-139 303-383 (429)
198 3rjv_A Putative SEL1 repeat pr 24.9 1.6E+02 0.0056 22.1 6.1 59 71-134 33-95 (212)
199 2qfc_A PLCR protein; TPR, HTH, 23.3 1.6E+02 0.0054 23.2 5.9 47 79-125 64-110 (293)
200 3u3w_A Transcriptional activat 23.3 66 0.0023 25.5 3.6 59 72-130 171-242 (293)
201 4gns_B Protein CSD3, chitin bi 22.3 1.2E+02 0.004 29.6 5.6 45 72-116 353-397 (754)
202 1j1d_C Troponin I, TNI; THIN f 22.1 2.7E+02 0.0093 21.4 8.9 26 2-27 11-38 (133)
203 4e6h_A MRNA 3'-END-processing 22.0 3E+02 0.01 26.0 8.3 79 73-159 326-405 (679)
204 1hz4_A MALT regulatory protein 20.3 2E+02 0.0069 23.0 6.0 51 72-122 109-167 (373)
205 3q15_A PSP28, response regulat 20.0 1.7E+02 0.0059 23.9 5.6 53 72-124 117-175 (378)
No 1
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.63 E-value=0.00064 Score=51.26 Aligned_cols=83 Identities=11% Similarity=0.067 Sum_probs=69.2
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhCCCCCCChH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFIEQMKGAEGDVHPA 150 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v~~~~~~~~~~~~~ 150 (201)
=.++|+.++.-.....|++.++|..--.+|.+.|+|-.|+.++.++..++|++|.++..+..+..... . .+..
T Consensus 46 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~----~~~a 118 (150)
T 4ga2_A 46 EYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKND---V----TDGR 118 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC---S----SSSH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---C----hHHH
Confidence 37899999999999999999999999999999999999999999999999999999988887765441 1 3445
Q ss_pred HHHHHhhhhc
Q psy7864 151 VWEVLKSGLE 160 (201)
Q Consensus 151 V~~Vl~~e~~ 160 (201)
+...++..+.
T Consensus 119 a~~~~~~al~ 128 (150)
T 4ga2_A 119 AKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 2
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.41 E-value=0.0007 Score=49.46 Aligned_cols=75 Identities=19% Similarity=0.083 Sum_probs=64.7
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
|..+.... =.++|+..+.-.....|++.++|..--.+|++.|++-.|+.++.++..++|+++..+..+.......
T Consensus 24 g~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 24 GLSMLKLA-NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34444443 4799999999999999999999999999999999999999999999999999999887776665544
No 3
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.33 E-value=0.00089 Score=51.82 Aligned_cols=67 Identities=16% Similarity=0.052 Sum_probs=60.5
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
=.++|+.++.-+....|++..+|..--.+|.+.|+|--|+.|+.++..++|++|..|..+-..+..+
T Consensus 51 ~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~l 117 (151)
T 3gyz_A 51 RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRL 117 (151)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 4799999999999999999999998889999999999999999999999999999987766655443
No 4
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.32 E-value=0.00083 Score=49.55 Aligned_cols=67 Identities=16% Similarity=-0.008 Sum_probs=60.3
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
.=.++|+.++..+....|++..+|..--.+|.+.|+|-.|+.++.++..++|++|..+..+-.....
T Consensus 32 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 32 GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999999999999999998766555443
No 5
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.09 E-value=0.0019 Score=48.79 Aligned_cols=66 Identities=15% Similarity=-0.002 Sum_probs=59.4
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
=.++|+.++..+....|++..+|..--.+|.+.|+|-.|+.++.++..++|++|..+..+-.....
T Consensus 36 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 36 XYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 478999999999999999999999888999999999999999999999999999988776555443
No 6
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.07 E-value=0.0037 Score=41.22 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=58.3
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
=.++|+.++.-.....|++..+|..--.+|++.+.|-.|+.++.++..++|+++..+..+....
T Consensus 24 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 24 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999998887765544
No 7
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.03 E-value=0.0014 Score=48.30 Aligned_cols=55 Identities=9% Similarity=-0.103 Sum_probs=26.7
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTL 126 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~l 126 (201)
.++|+.++.-..+..|++..+|..--.+|++.|+|-.|+.++.++..+||+++..
T Consensus 29 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 29 YPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 3444444444444444444444444444444555555555555554455444443
No 8
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.98 E-value=0.005 Score=41.85 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=54.0
Q ss_pred hHHHHHHhHHHHHHHccchHh-HhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIE-THLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLH 127 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~ie-t~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh 127 (201)
=.++|+.++.-.....|++.. +|..--.+|++.|.|-.|+.++.++..++|+++..+
T Consensus 15 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 15 DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 368999999999999999999 999999999999999999999999999999999887
No 9
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.93 E-value=0.0024 Score=48.06 Aligned_cols=72 Identities=18% Similarity=0.060 Sum_probs=60.4
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHH-HHHHhhcCCCCchHHHHHHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQS-VKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqa-L~~a~~id~~~P~lh~~~vrf~ 134 (201)
|.-+.... =.++|+.+++-..+..|++.++|..--.+|++.+++--+.++ +.+|.+++|+||.++....++.
T Consensus 72 g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 72 GLLYELEE-NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHcC-chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 44444443 478999999999999999999999999999999999988887 6899999999999886655544
No 10
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=96.90 E-value=0.016 Score=45.84 Aligned_cols=74 Identities=11% Similarity=-0.078 Sum_probs=63.2
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
|..+.... =.++|+.++.-.....|++.++|..--.+|++.|++-.|+.++.++..++|+++..+..+......
T Consensus 12 g~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 12 GVQLYALG-RYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33444433 478999999999999999999999999999999999999999999999999999888776665543
No 11
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.87 E-value=0.0037 Score=45.93 Aligned_cols=70 Identities=14% Similarity=0.059 Sum_probs=58.4
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIR 132 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vr 132 (201)
|.-+....+ .++|+..+.-..++.|++..+|..--.+|+..|+|-.|+.++.++.++||+|+..+..+-+
T Consensus 54 ~~~~~~~~~-~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 54 AACLTKLME-FQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHhhcc-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 333444443 6889999999999999999999988899999999999999999999999999988876654
No 12
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.0041 Score=44.18 Aligned_cols=74 Identities=9% Similarity=-0.068 Sum_probs=61.5
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
|..+.... =.++|+.++.-.....|++..+|..--.+|++.|.|-.|+.++.++..++|+++..+..+......
T Consensus 11 g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 11 GKEYFTKS-DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33444333 368899999999999999999999999999999999999999999999999999887666555443
No 13
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.81 E-value=0.0071 Score=40.81 Aligned_cols=61 Identities=11% Similarity=-0.081 Sum_probs=37.2
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIR 132 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vr 132 (201)
.++|+.++.-.....|++..+|..--.+|.+.|+|-.|+.++..+..++|+++.++..+.+
T Consensus 54 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 54 YQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4556666666666666666666655566666666666666666666666666655544443
No 14
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.79 E-value=0.0045 Score=46.28 Aligned_cols=64 Identities=13% Similarity=0.012 Sum_probs=51.3
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
.++|+.++.-.....|++..+|..--.+|++.|+|-.|+.++.++..++|+++..+..+-..+.
T Consensus 27 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 27 YSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 6788888888888888888888888888888888888888888888888888877766555443
No 15
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.73 E-value=0.0059 Score=45.48 Aligned_cols=69 Identities=9% Similarity=-0.086 Sum_probs=61.9
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCc-hHHHHHHHHHHHHHh
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNP-TLHTCLIRLALFIEQ 139 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P-~lh~~~vrf~~~v~~ 139 (201)
=.++|+.++.-.+.+.|++..+|..--.+|+..|.|-.|+.++.++..++|+++ .++..+.++...+..
T Consensus 78 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 78 DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999 777777777666543
No 16
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.73 E-value=0.0062 Score=43.27 Aligned_cols=62 Identities=8% Similarity=-0.141 Sum_probs=43.1
Q ss_pred hHHHHHHhHHHHHHHccch---HhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDR---IETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIR 132 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~---iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vr 132 (201)
=.++|+.++.......|++ ..+|..--.+|++.+.|-.|+.++.++..++|+++.++..+..
T Consensus 43 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 43 DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 4667777777777777776 6777766677777777777777777777777777665544433
No 17
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.73 E-value=0.0052 Score=48.34 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=30.8
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLI 131 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~v 131 (201)
.++|+.++.-.+...|++.++|..--.+|+..|+|-.|+.++.++..++|+++..+..+-
T Consensus 70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 129 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG 129 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345555555555555555555555555555555555555555555555555555444433
No 18
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.70 E-value=0.0063 Score=45.43 Aligned_cols=67 Identities=7% Similarity=-0.097 Sum_probs=60.4
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCch--HHHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPT--LHTCLIRLALFI 137 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~--lh~~~vrf~~~v 137 (201)
=.++|+.++.-.....|++..+|..--.+|++.|+|-.|+.++.++..++|+++. +...+......+
T Consensus 60 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 128 (164)
T 3sz7_A 60 QHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKI 128 (164)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999988 666666666555
No 19
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.68 E-value=0.007 Score=42.94 Aligned_cols=66 Identities=18% Similarity=0.056 Sum_probs=59.5
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
=.++|+.++.-.....|++..+|..--.+|++.|.|-.|+.++.++..++|+++..+..+......
T Consensus 24 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 89 (137)
T 3q49_B 24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 89 (137)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999887766655543
No 20
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.67 E-value=0.01 Score=40.58 Aligned_cols=64 Identities=19% Similarity=0.025 Sum_probs=41.2
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
.++|+.++.-.....|++..+|...-.+|++.|.|-.|+.++.++..++|+++.++..+.....
T Consensus 62 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 62 YAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 4566666666666666666666666666666666666666666666666666666555554443
No 21
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.013 Score=39.89 Aligned_cols=52 Identities=8% Similarity=-0.049 Sum_probs=50.0
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCC
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKN 123 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~ 123 (201)
.++|+.++.-.....|++..+|..--.+|++.|+|-.|+.++.++..++|++
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 20 YREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 6899999999999999999999999999999999999999999999999998
No 22
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.63 E-value=0.0095 Score=48.01 Aligned_cols=67 Identities=12% Similarity=0.109 Sum_probs=60.1
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
=.++|+.++.-.....|++..+|..--.+|.+.|+|-.|+.++.++..++|+++.++..+.+....+
T Consensus 287 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 287 KPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999999999999988888777655
No 23
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.61 E-value=0.0081 Score=40.52 Aligned_cols=66 Identities=11% Similarity=-0.035 Sum_probs=58.9
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
=.++|+.++.......|++..+|..--.+|++.|.|-.|+.++.++..++|+++.++..+......
T Consensus 19 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 19 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 368999999999999999999999888999999999999999999999999999888776665543
No 24
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.60 E-value=0.0067 Score=47.67 Aligned_cols=39 Identities=10% Similarity=-0.044 Sum_probs=31.9
Q ss_pred hHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 96 AFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 96 aFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
--.+|++.|+|=.|+.++.++.+++|+++..+..+-...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 98 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQ 98 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 346889999999999999999999999988766555443
No 25
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.58 E-value=0.0098 Score=40.74 Aligned_cols=66 Identities=17% Similarity=0.036 Sum_probs=59.4
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
=.++|+.++.-.....|++..+|..--.+|+..|.|-.|+.++.++..++|+++.++..+......
T Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 27 NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999888777665543
No 26
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.49 E-value=0.01 Score=44.60 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=61.0
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFIEQ 139 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v~~ 139 (201)
=.++|+..+.-.....|++..+|..--.+|+..|++-.|+.++.++..++|++|..+....+....+..
T Consensus 70 ~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~ 138 (148)
T 2vgx_A 70 QYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEA 138 (148)
T ss_dssp CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999999999999999887666665555433
No 27
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.45 E-value=0.019 Score=38.93 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=37.0
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLI 131 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~v 131 (201)
.++|+.++.-.....|++..+|..--.+|++.+.+-.|+.++.++..++|+++.++..+.
T Consensus 59 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 118 (125)
T 1na0_A 59 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118 (125)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 456666666666666666666666666666666666666666666666666665554433
No 28
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.42 E-value=0.0053 Score=43.11 Aligned_cols=63 Identities=13% Similarity=0.068 Sum_probs=48.7
Q ss_pred HHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 74 QAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 74 eA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
+|+..+.-.....|++..+|..--.+|++.|+|-.|+.++.++..++|+++..+..+......
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 65 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG 65 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 466777777778888888888777888888888888888888888888887777666555443
No 29
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.0069 Score=42.97 Aligned_cols=65 Identities=6% Similarity=-0.003 Sum_probs=59.3
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcC------CCCchHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALD------PKNPTLHTCLIRLAL 135 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id------~~~P~lh~~~vrf~~ 135 (201)
=.++|+..+.-.....|++..+|..--.+|+..|+|-.|+.++.++..++ |+++.++..+.+...
T Consensus 53 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 53 SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999 888888877766544
No 30
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.37 E-value=0.011 Score=43.29 Aligned_cols=75 Identities=16% Similarity=-0.005 Sum_probs=61.8
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
|.-+.... =.++|+.++.-.....|++..+|..--.+|+..|+|-.|+.++.++..++|++|.......+....+
T Consensus 59 g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 133 (142)
T 2xcb_A 59 GACRQSLG-LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133 (142)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHh-hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 33343333 3689999999999999999999999999999999999999999999999999998765544444433
No 31
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.30 E-value=0.028 Score=39.23 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=50.0
Q ss_pred hHHHHHHhHHHHHHHccchH---hHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRI---ETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTL 126 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~i---et~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~l 126 (201)
=.++|+.++.-+....|++. ++|...-.+|++.|+|-.|+.++.++..++|+++..
T Consensus 17 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 75 (129)
T 2xev_A 17 KYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKA 75 (129)
T ss_dssp CHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTH
T ss_pred CHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCccc
Confidence 36899999999999999888 788888899999999999999999999999999544
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=96.28 E-value=0.052 Score=42.75 Aligned_cols=72 Identities=15% Similarity=0.030 Sum_probs=60.4
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhc-----------cchhHHHHHHHHHhhcCCCCchHHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRR-----------QKPLLMLQSVKRAWALDPKNPTLHTCL 130 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk-----------~K~LLaLqaL~~a~~id~~~P~lh~~~ 130 (201)
|.-+.... =.++|+.++.-.....|++.++|..--.+|.+. |.+-.|+.++.++.+++|+++..+..+
T Consensus 46 g~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l 124 (217)
T 2pl2_A 46 ARTQLKLG-LVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124 (217)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 33344433 368999999999999999999999999999999 999999999999999999999887665
Q ss_pred HHHH
Q psy7864 131 IRLA 134 (201)
Q Consensus 131 vrf~ 134 (201)
-...
T Consensus 125 g~~~ 128 (217)
T 2pl2_A 125 GLVY 128 (217)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.27 E-value=0.022 Score=47.61 Aligned_cols=85 Identities=12% Similarity=0.017 Sum_probs=67.1
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhCCCCCCCh
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFIEQMKGAEGDVHP 149 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v~~~~~~~~~~~~ 149 (201)
+=.++|+.++.-+....|++..+|..---+|++.|+|--|..++.++..++|++|..+..+..+.... + ...+
T Consensus 180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~----g---~~~e 252 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHL----G---KPPE 252 (291)
T ss_dssp THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----T---CCHH
T ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----C---CCHH
Confidence 56889999999999999999999988888999999999999999999999999999887777665443 2 1334
Q ss_pred HHHHHHhhhhcc
Q psy7864 150 AVWEVLKSGLEP 161 (201)
Q Consensus 150 ~V~~Vl~~e~~~ 161 (201)
.+...+.+.+..
T Consensus 253 aa~~~~~~~~~~ 264 (291)
T 3mkr_A 253 VTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555666655543
No 34
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.25 E-value=0.013 Score=40.62 Aligned_cols=65 Identities=14% Similarity=-0.030 Sum_probs=58.5
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
=.++|+.++.-.....|++..+|..--.+|++.++|-.|+.++.++..++|+++.++..+.....
T Consensus 31 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 31 DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999999999999988877666554
No 35
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.25 E-value=0.019 Score=39.69 Aligned_cols=65 Identities=12% Similarity=-0.051 Sum_probs=58.7
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
.=.++|++++.-.....|++..+|..--.+|++.|+|-.|++++.++..++|+++.++..+....
T Consensus 64 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 128 (133)
T 2lni_A 64 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 128 (133)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999998877666554
No 36
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.24 E-value=0.0046 Score=43.96 Aligned_cols=66 Identities=14% Similarity=-0.019 Sum_probs=53.3
Q ss_pred HHHHHHhHHHHHHH---ccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLL---AKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 72 LeeA~KfL~pL~~~---a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
.++|+.++.-.+.. .|++..+|..--.+|++.|+|-.|+.++.++..++|+++.++..+.......
T Consensus 6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 74 (117)
T 3k9i_A 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNL 74 (117)
T ss_dssp -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc
Confidence 34677778888887 5888999998888999999999999999999999999988887766655443
No 37
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.20 E-value=0.017 Score=43.25 Aligned_cols=64 Identities=8% Similarity=-0.068 Sum_probs=48.2
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
.+.|..++.-.....|++.++|..--.+|++.|+|-.|+.++.++..++|+++.++..+-....
T Consensus 89 ~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 89 KQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 5677777777777778888887777778888888888888888888888888777766555443
No 38
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.19 E-value=0.029 Score=37.42 Aligned_cols=65 Identities=6% Similarity=0.023 Sum_probs=57.5
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCC--CchHHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPK--NPTLHTCLIRLA 134 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~--~P~lh~~~vrf~ 134 (201)
.=.++|+.++.-.....|++..+|..--.+|++.|+|-.|+.++.++..++|+ ++.++..+....
T Consensus 20 ~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 20 GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 34789999999999999999999999899999999999999999999999999 888776655544
No 39
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.18 E-value=0.023 Score=42.45 Aligned_cols=59 Identities=8% Similarity=0.055 Sum_probs=42.0
Q ss_pred HHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHH
Q psy7864 73 EQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLI 131 (201)
Q Consensus 73 eeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~v 131 (201)
++|+.++.-.....|++..+|..--.+|++.|.|-.|+.++.++..++|+++.....+.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE 156 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 77777777777777777777777777777777777777777777777777766554433
No 40
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.17 E-value=0.024 Score=38.42 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=58.2
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
.=.++|+.++.-.....|++..+|..--.+|++.|.|-.|+.++.++..++|.++.++..+.....
T Consensus 23 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999999999999999999999887766655543
No 41
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.16 E-value=0.026 Score=43.33 Aligned_cols=70 Identities=10% Similarity=0.017 Sum_probs=63.7
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFIEQM 140 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v~~~ 140 (201)
=.++|+.++.-.....|++..+|..--.+|++.|.|-.|+.++.++..++|+++.++..+......+...
T Consensus 103 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 103 DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999998888877666443
No 42
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.15 E-value=0.021 Score=41.27 Aligned_cols=64 Identities=22% Similarity=0.035 Sum_probs=52.5
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
.++|+.++.-.....|++..+|...-.+|++.|.|-.|+.++.++..++|+++..+..+.....
T Consensus 29 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 29 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 6788888888888888888888888888888888888888888888888888877766555543
No 43
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.10 E-value=0.18 Score=37.41 Aligned_cols=62 Identities=18% Similarity=0.144 Sum_probs=52.3
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRL 133 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf 133 (201)
.++|++++.-.++..|++.++|..--.+|++.|++-.|+.++..+..++|+++..+..+..+
T Consensus 21 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 21 FDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 67888888888888999999998888899999999999999999988999888776555443
No 44
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.09 E-value=0.025 Score=40.02 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=49.8
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRL 133 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf 133 (201)
-.++|+.++.-.....|++..+|...-.+|++.++|-.|++++.++..++|+++.++..+.++
T Consensus 80 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 80 DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp CHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 467788888888888888888888777888888888888888888888888888777665554
No 45
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.06 E-value=0.027 Score=43.78 Aligned_cols=62 Identities=8% Similarity=0.035 Sum_probs=55.7
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIR 132 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vr 132 (201)
=.++|++++.-.....|++..+|..--.+|.+.|+|-.|+.++.++..++|+++.++..++.
T Consensus 57 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 118 (228)
T 4i17_A 57 KYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAI 118 (228)
T ss_dssp CHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999966444443
No 46
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.04 E-value=0.034 Score=38.82 Aligned_cols=73 Identities=12% Similarity=-0.021 Sum_probs=62.2
Q ss_pred chhhccccchHHHHHHhHHHHHHHccch---HhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDR---IETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~---iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
|.-+....+ .++|+.++.-+....|++ .+++...-.+|++.|.+-.|+..+..+..++|+++..+....++..
T Consensus 46 g~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 46 GESYYATRN-FQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHhcc-HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 444444444 689999999999999998 8889988999999999999999999999999999998877766654
No 47
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=95.85 E-value=0.044 Score=37.20 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=48.8
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
=.++|.+++.-.....|+...+|..--.+|.+.|.|-.|++.+..+..++|.++.++..+....
T Consensus 50 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 113 (136)
T 2fo7_A 50 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3677888888888888888888877777888888888888888888888887777665555544
No 48
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=95.85 E-value=0.018 Score=40.75 Aligned_cols=58 Identities=7% Similarity=-0.004 Sum_probs=54.5
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHT 128 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~ 128 (201)
=.++|+.++.-.....|++.++|..--.+|++.|+|-.|+.++.++..++|++|.++.
T Consensus 42 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 42 EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 3689999999999999999999999999999999999999999999999999998763
No 49
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=95.81 E-value=0.045 Score=37.16 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=56.8
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
.++|+.++.-.....|++..+|...-.+|++.|.+-.|+..+.++..++|.++.++..+....
T Consensus 17 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 689999999999999999999999899999999999999999999999999988877665554
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=95.75 E-value=0.073 Score=46.99 Aligned_cols=65 Identities=15% Similarity=0.009 Sum_probs=58.5
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccc-hhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQK-PLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K-~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
.++|+.++.-.+...|++..+|..--.+|.+.|+ |--|+.++.++..++|+++.++..+-.....
T Consensus 113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 178 (382)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999998 9999999999999999999887665554443
No 51
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.035 Score=42.63 Aligned_cols=60 Identities=12% Similarity=-0.064 Sum_probs=28.6
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLI 131 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~v 131 (201)
.++|+.++.-.....|++..+|..--.+|++.|+|-.|+.++..+..++|+++..+..+.
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 214 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 214 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444443333
No 52
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=95.71 E-value=0.039 Score=41.16 Aligned_cols=64 Identities=17% Similarity=0.120 Sum_probs=54.1
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRL 133 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf 133 (201)
.-.++|+.++.......|++.++|..--.+|++.|.|-.|+.++.++..++|+++.++..+...
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 87 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATV 87 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3467788888888889999999999999999999999999999999999999998887666655
No 53
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.71 E-value=0.019 Score=41.82 Aligned_cols=69 Identities=14% Similarity=0.080 Sum_probs=58.5
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLI 131 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~v 131 (201)
|..+.+..+ .++|+.++.--+++.|++..+|.---.+|++.|+|-.|+.++.++..|+|+++..|..+.
T Consensus 15 G~~~~~~~~-~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 15 GNAAYKQKD-FEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 555555444 789999999999999999999998889999999999999999999999998876554443
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=95.67 E-value=0.13 Score=38.43 Aligned_cols=64 Identities=14% Similarity=0.075 Sum_probs=56.0
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
=.++|+.++.......|++..+|..--.+|++.|.+-.|+.++.++..++|+++.++..+..+.
T Consensus 23 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 23 DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3688999999999999999999999999999999999999999999999999988776666554
No 55
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=95.62 E-value=0.15 Score=40.48 Aligned_cols=65 Identities=9% Similarity=0.261 Sum_probs=56.2
Q ss_pred chhhccccchHHHHHHhHHHHHHHccch---HhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDR---IETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLH 127 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~---iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh 127 (201)
|..+....+ .++|+.++.-+....|++ .++|...-.+|++.|+|-.|+.++.++..++|++|...
T Consensus 22 a~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 22 AMEFYNQGK-YDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred HHHHHHhCC-HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 444444444 799999999999999998 99999999999999999999999999999999887643
No 56
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.61 E-value=0.018 Score=41.73 Aligned_cols=64 Identities=17% Similarity=0.075 Sum_probs=49.1
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTL 126 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~l 126 (201)
|.-+.... =.++|+..+.-.....|++.++|..--.+|.+.|++-.|+.++.++..++|+++.+
T Consensus 58 g~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 121 (121)
T 1hxi_A 58 GLTQAENE-KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121 (121)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCCC
Confidence 44343333 47899999999999999999999999999999999999999999999999987653
No 57
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.56 E-value=0.069 Score=38.40 Aligned_cols=59 Identities=12% Similarity=-0.052 Sum_probs=54.7
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTC 129 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~ 129 (201)
=.++|+.++.-.....|++..+|..--.+|++.|.|-.|+.++.++..++|+++.++..
T Consensus 62 ~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 120 (166)
T 1a17_A 62 CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMK 120 (166)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999887643
No 58
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.50 E-value=0.055 Score=39.06 Aligned_cols=65 Identities=15% Similarity=0.066 Sum_probs=52.6
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
.=.++|+.++.-.....|++..+|..--.+|++.|++-.|+.++.++..++|+++.++..+....
T Consensus 56 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 120 (186)
T 3as5_A 56 GAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHH
Confidence 34688888888888888888888888888888888888888888888888888887765555443
No 59
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.50 E-value=0.05 Score=42.45 Aligned_cols=63 Identities=13% Similarity=-0.107 Sum_probs=44.9
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
.++|+.++.-.....|++..+|..--.+|++.|.|-.|+.++.++..++|+++.++..+....
T Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence 567777777777777777777777777777777777777777777777777776665554443
No 60
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.48 E-value=0.012 Score=41.09 Aligned_cols=65 Identities=12% Similarity=0.110 Sum_probs=54.3
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLH 127 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh 127 (201)
|.-+....+ .++|+.++.-.....|++..+|..--.+|.+.|+|-.|+.++.++..++|.++..|
T Consensus 14 g~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 78 (100)
T 3ma5_A 14 AQEHLKHDN-ASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK 78 (100)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh
Confidence 333333333 58999999999999999999999999999999999999999999999988776665
No 61
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=95.46 E-value=0.041 Score=36.64 Aligned_cols=54 Identities=13% Similarity=-0.027 Sum_probs=51.0
Q ss_pred hHHHHHHhHHHHHHHccc--hHhHhHHhHhHhhhc-cchhHHHHHHHHHhhcCCCCc
Q psy7864 71 PLEQAVKFLSPLQLLAKD--RIETHLMAFEIYFRR-QKPLLMLQSVKRAWALDPKNP 124 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~--~iet~llaFEVy~Rk-~K~LLaLqaL~~a~~id~~~P 124 (201)
=.++|+.++.-.....|+ +..+|..--.+|++. |++-.|++++..+...+|++|
T Consensus 55 ~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 55 RYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp CHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred CHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 378999999999999999 999999999999999 999999999999999999876
No 62
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=95.43 E-value=0.061 Score=43.21 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=60.2
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
.=.++|+.++.-+....|++.++|..-..+|++.|.|-.|+.++.++..++|+++..+..+......
T Consensus 134 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ 200 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999999999999999888777666544
No 63
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=95.41 E-value=0.079 Score=36.15 Aligned_cols=67 Identities=7% Similarity=0.061 Sum_probs=58.0
Q ss_pred chHHHHHHhHHHHHHHccch-------HhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDR-------IETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~-------iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
.=.++|+.++.-.....|++ ..+|..--.+|++.|.|-.|+.++.++..++| ++.+...+.+....+
T Consensus 52 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 52 GDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 34689999999999998887 88899889999999999999999999999999 688877777766655
No 64
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=95.40 E-value=0.27 Score=39.03 Aligned_cols=65 Identities=22% Similarity=0.152 Sum_probs=59.0
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
=+++|+.++.-+....|++..+|...-.+|++.|.|-.|+.++.++..++|+++..+..+.....
T Consensus 36 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 36 NLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999988877666543
No 65
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=95.40 E-value=0.028 Score=43.08 Aligned_cols=66 Identities=11% Similarity=-0.047 Sum_probs=56.0
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
=.++|+.++.-.....|++..+|..--.+|++.|+|-.|+.++.++..++|+++.++..+..+...
T Consensus 140 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 205 (243)
T 2q7f_A 140 QPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY 205 (243)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 468899999998899999999999888999999999999999999999999988887766665543
No 66
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.38 E-value=0.052 Score=40.23 Aligned_cols=74 Identities=7% Similarity=-0.036 Sum_probs=57.6
Q ss_pred chhhccccchHHHHHHhHHHHHHH------------------ccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCC
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLL------------------AKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKN 123 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~------------------a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~ 123 (201)
|..+.... =.++|+.++.-.+.+ .|.+..+|.---.+|++.|.|-.|+.++.++..+||++
T Consensus 18 G~~~~~~~-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~ 96 (162)
T 3rkv_A 18 GNELFVQK-DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETN 96 (162)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHcC-CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc
Confidence 44444333 356677777666666 78888999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHH
Q psy7864 124 PTLHTCLIRLALF 136 (201)
Q Consensus 124 P~lh~~~vrf~~~ 136 (201)
+..+..+-.....
T Consensus 97 ~~a~~~~g~~~~~ 109 (162)
T 3rkv_A 97 EKALFRRAKARIA 109 (162)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 9887666555443
No 67
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=95.35 E-value=0.059 Score=41.81 Aligned_cols=63 Identities=16% Similarity=0.077 Sum_probs=37.5
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
.++|+.++.-.....|++..+|..--.+|++.|+|-.|+.++..+..++|+++..+..+..+.
T Consensus 157 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (252)
T 2ho1_A 157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLA 219 (252)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666666666666655554444443
No 68
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=95.33 E-value=0.063 Score=45.36 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=58.3
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
=+++|+.++.-.....|++..+|..-..+|...|.|-.|+.++.++..++|+++.++..+.......
T Consensus 310 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 310 KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHh
Confidence 3788999999999999999999999999999999999999999999999999998888777665544
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.29 E-value=0.29 Score=35.15 Aligned_cols=64 Identities=19% Similarity=0.064 Sum_probs=49.7
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
.++|+.++.......|++..+|...-.+|++.|.+-.|+.++..+..++|+++.++..+.....
T Consensus 24 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 24 YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5677777777777778888888888888888888888888888888888888777666655443
No 70
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=95.27 E-value=0.057 Score=41.28 Aligned_cols=121 Identities=13% Similarity=0.082 Sum_probs=80.9
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhC--------
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFIEQMKG-------- 142 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v~~~~~-------- 142 (201)
=.++|+.++.-.....|++..+|...-.+|++.|+|-.|+..+.++..++|+++.++..+............
T Consensus 106 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999998887666554433211000
Q ss_pred -CCCCCChHHHHHHhhhhccCCCC-CCHHHHHHHHHHHcCCChHHHHHHHHh
Q psy7864 143 -AEGDVHPAVWEVLKSGLEPIMGS-KPALELNASYLKENASHLPALLCEVAL 192 (201)
Q Consensus 143 -~~~~~~~~V~~Vl~~e~~~l~~~-~~l~~~N~~fl~~h~~S~~h~laaa~~ 192 (201)
...+-...+...+...... .|. ..+..+-+..+..+.++.......+.+
T Consensus 186 ~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 186 TEQDPGHADAFYNAGVTYAY-KENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHCTTCHHHHHHHHHHHHH-TTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHhCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 0000122222222221111 143 456667777777777776655544433
No 71
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=95.23 E-value=0.032 Score=38.21 Aligned_cols=53 Identities=13% Similarity=0.151 Sum_probs=49.3
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCC
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKN 123 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~ 123 (201)
=.++|+.++.-.....|++..+|..--.+|++.|+|-.|+.++.++..++|++
T Consensus 19 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 19 DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 46899999999999999999999999999999999999999999999998876
No 72
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=95.23 E-value=0.22 Score=40.64 Aligned_cols=74 Identities=16% Similarity=0.115 Sum_probs=63.3
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
|.-+.... =.++|+.++.-.....|++..+|..--.+|++.|+|-.|+.++.++..++|+++..+..+......
T Consensus 71 ~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 71 GLRRLQEG-DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 33343333 478999999999999999999999999999999999999999999999999999988777766543
No 73
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.22 E-value=0.073 Score=45.33 Aligned_cols=67 Identities=15% Similarity=0.016 Sum_probs=61.4
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
=.++|+.++.-.+.+.|++..+|..--.+|++.|.|-.|+.++.++..++|+++..+..+.......
T Consensus 211 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~ 277 (336)
T 1p5q_A 211 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 277 (336)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999888777766555
No 74
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=95.22 E-value=0.067 Score=40.37 Aligned_cols=60 Identities=10% Similarity=0.036 Sum_probs=54.2
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLI 131 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~v 131 (201)
-.++|+.+++......|++.++|..--.+|++.|++=.|+.++.++..++| +|.++....
T Consensus 21 ~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 21 EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999 887765543
No 75
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.19 E-value=0.038 Score=44.23 Aligned_cols=65 Identities=11% Similarity=-0.026 Sum_probs=55.3
Q ss_pred chHHHHHHhHHHHHHHccchHhHhH-HhHhHhhhccchh----------HHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHL-MAFEIYFRRQKPL----------LMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~l-laFEVy~Rk~K~L----------LaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
.-.++|++.++--.+..|++.++|. ++. +++..+.+- -|+.++.+|.+|||+++..+-++---+.
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~-~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGG-VLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 3589999999999999999999999 777 998887754 9999999999999999987666554443
No 76
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=95.12 E-value=0.54 Score=37.27 Aligned_cols=66 Identities=9% Similarity=-0.092 Sum_probs=55.4
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhcc-chhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQ-KPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~-K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
=.++|+.++.-+....|++..+|..--.+|++.| .+-.|++++.++..++|+++..+..+......
T Consensus 71 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 137 (330)
T 3hym_B 71 KANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV 137 (330)
T ss_dssp CHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 4688888898888899999999988888999998 88889999999999999988887766665543
No 77
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=95.11 E-value=0.061 Score=47.48 Aligned_cols=63 Identities=10% Similarity=0.030 Sum_probs=56.5
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
+++|+.++.-.+.+.|++..+|..---||.+.|+|--|+.++.++..+||+++..+..+-...
T Consensus 148 ~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~ 210 (382)
T 2h6f_A 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI 210 (382)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHH
Confidence 899999999999999999999998889999999999999999999999999987765544433
No 78
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.06 E-value=0.067 Score=41.00 Aligned_cols=70 Identities=13% Similarity=0.071 Sum_probs=57.7
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRL 133 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf 133 (201)
|.-+... .=.++|+.++.-...+.|++.++|.---.+|++.|+|-.|+.++.++..++|++| +....-.+
T Consensus 77 g~~~~~~-g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~-~~~~A~~l 146 (151)
T 3gyz_A 77 AAIYQIK-EQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK-LKIKAQSY 146 (151)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-HHHHHHHH
T ss_pred HHHHHHH-ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH-HHHHHHHH
Confidence 3434333 3478999999999999999999999999999999999999999999999999876 44443333
No 79
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=95.04 E-value=0.047 Score=43.55 Aligned_cols=65 Identities=12% Similarity=-0.061 Sum_probs=59.0
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
.=.++|+.++.-.....|++..+|..--.+|.+.|++-.|+.++.++..++|+++..+..+....
T Consensus 250 g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 250 KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999998887766644
No 80
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=95.04 E-value=0.074 Score=43.93 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=60.4
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
=.++|+.++.-.....|++..+|..--.+|.+.|+|-.|+.++.++..++|+++..+..+......
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 80 DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 378999999999999999999999999999999999999999999999999999888777766543
No 81
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=95.03 E-value=0.078 Score=39.75 Aligned_cols=63 Identities=14% Similarity=0.048 Sum_probs=41.0
Q ss_pred hHHHHHHhHHHHHH--HccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQL--LAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRL 133 (201)
Q Consensus 71 PLeeA~KfL~pL~~--~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf 133 (201)
-.++|+.++.-... ..|+...+|..--.+|++.|.+-.|+.++.++..++|+++..+..+...
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 156 (225)
T 2vq2_A 92 RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART 156 (225)
T ss_dssp CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 45666666666666 4555666666666677777777777777777777777766655444443
No 82
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.02 E-value=0.062 Score=37.84 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=55.3
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCC-----CchHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPK-----NPTLHTCLIRLA 134 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~-----~P~lh~~~vrf~ 134 (201)
=.++|+.++.-.....|++..+|..--.+|+..|.|-.|+.++.++..++|+ ++.+...+.+..
T Consensus 58 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 58 QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999988 555554444433
No 83
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.044 Score=42.07 Aligned_cols=61 Identities=7% Similarity=-0.009 Sum_probs=55.0
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcC------CCCchHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALD------PKNPTLHTCLI 131 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id------~~~P~lh~~~v 131 (201)
=.++|+.++.-.....|++..+|..--.+|.+.|++-.|+.++.++..++ |+++.++..+.
T Consensus 188 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 188 SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999998 77777765543
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=94.92 E-value=0.071 Score=41.31 Aligned_cols=74 Identities=8% Similarity=-0.215 Sum_probs=61.7
Q ss_pred chhhccccchHHHHHHhHHHHHHHcc-chHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAK-DRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~-~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
|..+....+ .++|+.++.-.....| .+..+|...-.+|++.|+|-.|+.++.++..++|+++.++..+......
T Consensus 14 g~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 14 GNDALNAKN-YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHccC-HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 334443333 6899999999999998 8889999899999999999999999999999999999888776665543
No 85
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=94.87 E-value=0.097 Score=36.42 Aligned_cols=67 Identities=7% Similarity=-0.115 Sum_probs=56.2
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCc--hHHHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNP--TLHTCLIRLALFI 137 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P--~lh~~~vrf~~~v 137 (201)
=.++|+.++.-.....|++..+|..--.+|++.|.+-.|+.++.++..++|++. ..+..+..+...+
T Consensus 34 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l 102 (115)
T 2kat_A 34 QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL 102 (115)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999999999999999988643 4444454444444
No 86
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=94.85 E-value=0.52 Score=39.17 Aligned_cols=64 Identities=14% Similarity=0.014 Sum_probs=48.5
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
=+++|..++.......|++.++|..--.+|.+.|+|-.|+.++.++..++|+++..+..+....
T Consensus 48 ~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 111 (388)
T 1w3b_A 48 RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 4677888888888888888888887778888888888888888888888888776665554433
No 87
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=94.79 E-value=0.12 Score=38.94 Aligned_cols=64 Identities=9% Similarity=-0.005 Sum_probs=54.1
Q ss_pred HHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCC--chHHHHHHHHHHHH
Q psy7864 74 QAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKN--PTLHTCLIRLALFI 137 (201)
Q Consensus 74 eA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~--P~lh~~~vrf~~~v 137 (201)
+|+..+.-.....|++.++|..--.+|++.|.|-.|+.++.++.+++|++ +..+..+.......
T Consensus 92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 92 PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 36888888888999999999999999999999999999999999999876 55777777666544
No 88
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=94.79 E-value=0.099 Score=43.16 Aligned_cols=63 Identities=8% Similarity=-0.023 Sum_probs=35.1
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
.++|+.++.-.....|++..+|..--.+|.+.|+|-.|+.++.++..++|+++..+..+....
T Consensus 229 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 229 FNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555555555555555554444443
No 89
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=94.77 E-value=0.096 Score=41.68 Aligned_cols=66 Identities=14% Similarity=0.085 Sum_probs=54.3
Q ss_pred cchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 69 EEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 69 ~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
..-.++|+.++.-+....|++..+|..--.+|.+.|.|-.|+.++.++..++|+++.++..+....
T Consensus 151 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 216 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATL 216 (327)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 446788888888888888888888888888898999999999999998888888887766555443
No 90
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=94.77 E-value=0.068 Score=41.47 Aligned_cols=60 Identities=7% Similarity=-0.058 Sum_probs=55.6
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTC 129 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~ 129 (201)
.=.++|..++.-.....|++..+|.....+|.+.|.+-.|++.+..+..++|++|.++..
T Consensus 189 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp TCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 347899999999999999999999999999999999999999999999999999988753
No 91
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=94.74 E-value=0.11 Score=42.38 Aligned_cols=62 Identities=8% Similarity=-0.042 Sum_probs=37.9
Q ss_pred hHHHHHHhHHHHHHHccc--hHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKD--RIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIR 132 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~--~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vr 132 (201)
=.++|+.++.-.....|+ ...+|..--.+|++.|.|-.|+.++.++..++|+++.++..+..
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 259 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGA 259 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 356666666666666666 55666666666666666666666666666666666655544443
No 92
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=94.61 E-value=0.25 Score=40.78 Aligned_cols=51 Identities=14% Similarity=0.075 Sum_probs=34.2
Q ss_pred HHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 84 LLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 84 ~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
.+.|+..+.++..-..+++.|.+-.|+..+.++..++|+++..+..+.+..
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~ 161 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETL 161 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence 334667777776667777777777777777777777777776666555543
No 93
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=94.55 E-value=0.39 Score=39.93 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=27.8
Q ss_pred HHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHH
Q psy7864 73 EQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCL 130 (201)
Q Consensus 73 eeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~ 130 (201)
++|+.++.-.....|+.+++|..--.+|.+.+.|-.|+.++.++..++|+++.++..+
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 243 (388)
T 1w3b_A 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHH
Confidence 3444444444444444444444444444444555555555555555555554444433
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=94.55 E-value=0.11 Score=42.89 Aligned_cols=65 Identities=5% Similarity=-0.118 Sum_probs=55.7
Q ss_pred HHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCC--chHHHHHHHHHHHH
Q psy7864 73 EQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKN--PTLHTCLIRLALFI 137 (201)
Q Consensus 73 eeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~--P~lh~~~vrf~~~v 137 (201)
++|+..+.-.....|++.++|..--.+|++.|++--|+.++.++.+++|++ +..+..+..++..+
T Consensus 202 ~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 202 TPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 457777888888899999999988899999999999999999999999988 77888888877765
No 95
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=94.51 E-value=0.9 Score=38.14 Aligned_cols=60 Identities=17% Similarity=0.129 Sum_probs=48.3
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCc---hHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNP---TLHTCLI 131 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P---~lh~~~v 131 (201)
.++|+.++.-.....|++..+|..--.+|++.|.|-.|++++.++..++|+++ ..+..++
T Consensus 76 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 138 (450)
T 2y4t_A 76 SKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLI 138 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 57888888888888888888888888888888888888888888888888877 6655543
No 96
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.50 E-value=0.11 Score=46.32 Aligned_cols=67 Identities=9% Similarity=-0.064 Sum_probs=57.7
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
=.++|+.++.-.+.+.|++..+|..--.+|++.+.|-.|+.++.+|..++|+++.++..+..+...+
T Consensus 332 ~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKA 398 (457)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999888877776655
No 97
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=94.49 E-value=0.093 Score=50.54 Aligned_cols=75 Identities=13% Similarity=0.108 Sum_probs=60.9
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
|.-+....+ +++|+..++-..++.|++.++|..--.+|.+.|+|-.|+.++.+|.+++|+++..+..+...+..+
T Consensus 84 g~~l~~~g~-~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 84 GNTLKEMQD-VQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc
Confidence 334443333 688999999989999999999998888999999999999999999999999998888877766554
No 98
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.49 E-value=0.11 Score=42.82 Aligned_cols=62 Identities=18% Similarity=0.068 Sum_probs=55.3
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIR 132 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vr 132 (201)
=.++|+.++.-.....|++...|..--.+|++.|+|-.|+..+.++..++|+++..+..+..
T Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 47889999999999999999999988899999999999999999999999999877765544
No 99
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=94.46 E-value=0.11 Score=45.34 Aligned_cols=67 Identities=12% Similarity=0.082 Sum_probs=61.3
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
=.++|+.++.-.++..|++..+|..--.+|++.++|-.|+.++.+|..++|+++.++..+......+
T Consensus 288 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 288 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999988877776554
No 100
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.45 E-value=0.044 Score=46.84 Aligned_cols=64 Identities=9% Similarity=0.001 Sum_probs=44.9
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
.++|+.++.-.+.+.|++..+|..--.+|++.++|-.|+.++.++..++|+++.++..+..+..
T Consensus 246 ~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 246 YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999877776643
No 101
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=94.44 E-value=0.12 Score=46.03 Aligned_cols=68 Identities=19% Similarity=0.147 Sum_probs=61.1
Q ss_pred chHHHHHHhHHHHHHHcc---chHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAK---DRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~---~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
.=.++|+.++.-.....| ++..+|..--.+|.+.|+|-.|+.++.++..++|+++..+..+......+
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL 305 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 348999999999999999 99999999999999999999999999999999999998877776665544
No 102
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=94.34 E-value=0.6 Score=36.15 Aligned_cols=67 Identities=13% Similarity=0.052 Sum_probs=58.1
Q ss_pred cchHHHHHHhHHHHHHH----ccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 69 EEPLEQAVKFLSPLQLL----AKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 69 ~dPLeeA~KfL~pL~~~----a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
..=.++|+.++.-+... .|++..+|..--.+|++.|+|-.|+.++.++..++|+++.++..+.....
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT 88 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 34688999999999887 46789999999999999999999999999999999999988777666543
No 103
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=94.27 E-value=0.36 Score=46.46 Aligned_cols=63 Identities=14% Similarity=0.071 Sum_probs=47.7
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
+++|+.+++-.++..|++.++|.---.+|.+.|+|-.|+.++.+|.+++|+++..|..+-..+
T Consensus 25 ~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 25 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 677788887777788888888877777788888888888888888888888777766554443
No 104
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=94.21 E-value=0.092 Score=46.22 Aligned_cols=62 Identities=19% Similarity=0.298 Sum_probs=55.2
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIR 132 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vr 132 (201)
=.++|.+++.-+.+..|++..+|..--.+|.+.|+|-.|++.+.++..++|+++..+..+..
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999988766554
No 105
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.18 E-value=0.11 Score=36.89 Aligned_cols=66 Identities=8% Similarity=-0.101 Sum_probs=56.8
Q ss_pred chhhccccch--HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHH
Q psy7864 62 PDKLAKTEEP--LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLH 127 (201)
Q Consensus 62 GekL~~~~dP--LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh 127 (201)
|+-|.-..+. -++|..+|.--+...|++..+..+.=.+|++.|.|-.|+.+..++...+|.+|+..
T Consensus 13 a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~ 80 (93)
T 3bee_A 13 ATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRV 80 (93)
T ss_dssp HHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 4445433443 78999999999999999999999999999999999999999999999999987753
No 106
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=94.10 E-value=0.11 Score=40.74 Aligned_cols=69 Identities=12% Similarity=0.055 Sum_probs=58.8
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLI 131 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~v 131 (201)
|.-+....+ .++|++++.-.....|++..+|..--.+|++.|.|-.|+.++.++..++|+++.++..+.
T Consensus 81 g~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 149 (272)
T 3u4t_A 81 GKILMKKGQ-DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG 149 (272)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred HHHHHHccc-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 333333433 689999999999999999999999999999999999999999999999999988877666
No 107
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=93.99 E-value=0.15 Score=40.65 Aligned_cols=58 Identities=16% Similarity=0.088 Sum_probs=51.2
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhcc-----------chhHHHHHHHHHhhcCCCCchHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQ-----------KPLLMLQSVKRAWALDPKNPTLHTC 129 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~-----------K~LLaLqaL~~a~~id~~~P~lh~~ 129 (201)
.++|+.++.--+.+.|++.++|.--=-+|...| .|-.|++|+.+|..|||+++.....
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 679999999999999999999997778887764 8999999999999999999765433
No 108
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=93.88 E-value=0.21 Score=38.03 Aligned_cols=65 Identities=9% Similarity=0.026 Sum_probs=54.6
Q ss_pred HHHHHHhHHHHHHHccchH----------------hHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRI----------------ETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~i----------------et~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
.++|+.++.-...+.|++. .+|..--.+|++.|.|-.|+.++.++..++|+++..+..+.....
T Consensus 54 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 133 (198)
T 2fbn_A 54 INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM 133 (198)
T ss_dssp HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 5778888888888777765 788888899999999999999999999999999988766655544
Q ss_pred H
Q psy7864 136 F 136 (201)
Q Consensus 136 ~ 136 (201)
.
T Consensus 134 ~ 134 (198)
T 2fbn_A 134 Y 134 (198)
T ss_dssp H
T ss_pred H
Confidence 3
No 109
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=93.82 E-value=0.11 Score=35.92 Aligned_cols=52 Identities=12% Similarity=-0.036 Sum_probs=44.1
Q ss_pred ccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q psy7864 86 AKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFI 137 (201)
Q Consensus 86 a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v 137 (201)
.|++..+|..--.+|++.|+|-.|+.++.++..++|+++..+..+-..+...
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 54 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERL 54 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 6888999998888999999999999999999999999999887776665443
No 110
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=93.81 E-value=0.25 Score=37.35 Aligned_cols=54 Identities=17% Similarity=0.086 Sum_probs=50.8
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCc
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNP 124 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P 124 (201)
=.++|+.++.-.....|++..+|..--.+|++.|+|-.|+.++.++..++|+++
T Consensus 52 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 52 NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence 468999999999999999999999999999999999999999999999999877
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=93.69 E-value=0.55 Score=42.13 Aligned_cols=58 Identities=10% Similarity=0.005 Sum_probs=28.4
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTC 129 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~ 129 (201)
.++|..++.-..+..|++.++|..--.+|.+.|+|-.|+.++.++.+++|+++..+..
T Consensus 39 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 96 (568)
T 2vsy_A 39 TTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALW 96 (568)
T ss_dssp HHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3444555555555555555555444445555555555555555555555554444433
No 112
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=93.59 E-value=0.99 Score=37.03 Aligned_cols=66 Identities=15% Similarity=0.066 Sum_probs=56.5
Q ss_pred HHHHHHhHHHHHH-HccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCch-HHHHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQL-LAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPT-LHTCLIRLALFI 137 (201)
Q Consensus 72 LeeA~KfL~pL~~-~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~-lh~~~vrf~~~v 137 (201)
.++|...+.--.. +.|++...|..--.++.+.|.+-.|..+..++.+++|.++. ++.....|....
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 147 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 147 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHh
Confidence 4888888888888 68999999999999999999999999999999999999987 787777776443
No 113
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=93.58 E-value=1.1 Score=38.54 Aligned_cols=60 Identities=20% Similarity=0.130 Sum_probs=35.0
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLI 131 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~v 131 (201)
.++|+.++.-.....|++..+|..--.+|++.|+|-.|+.++.++..++|+++.++..+.
T Consensus 292 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 351 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA 351 (537)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 455666666666666666666665556666666666666666666666665555444433
No 114
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=93.58 E-value=0.19 Score=41.78 Aligned_cols=59 Identities=14% Similarity=-0.001 Sum_probs=52.7
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhH-HHHHHHHHhhcCCCCchHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLL-MLQSVKRAWALDPKNPTLHTC 129 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LL-aLqaL~~a~~id~~~P~lh~~ 129 (201)
=.++|...+.-.+...|++.++|.----+|...|++.- +.+.+.++..++|+||.+...
T Consensus 215 ~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 215 RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 47999999999999999999999977789999999986 568899999999999988654
No 115
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=93.37 E-value=0.18 Score=44.97 Aligned_cols=72 Identities=15% Similarity=0.042 Sum_probs=59.8
Q ss_pred cchhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHH
Q psy7864 61 IPDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRL 133 (201)
Q Consensus 61 ~GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf 133 (201)
.|.-+....+..++|+.++.-.+...|++.++|..--.+|++.|.|-.|+.++.++..++|+ +..+..+...
T Consensus 108 lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~ 179 (474)
T 4abn_A 108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMV 179 (474)
T ss_dssp HHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHH
Confidence 34555555665599999999999999999999999999999999999999999999999998 5555444443
No 116
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=93.35 E-value=0.26 Score=44.35 Aligned_cols=73 Identities=21% Similarity=0.054 Sum_probs=54.7
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
|..+.... =.++|+.++.-..+..|++..+|..--.+|++.++|-.|+.++.+|.+++|+++..+..+.....
T Consensus 13 g~~~~~~g-~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 13 ANDYFKAK-DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp SSSTTTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhC-CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44444333 36778888888888888888888888888888888888888888888888888877766555443
No 117
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=93.33 E-value=0.23 Score=42.17 Aligned_cols=65 Identities=17% Similarity=0.058 Sum_probs=57.0
Q ss_pred HHHHHHhHHHHHHHccch---------------HhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDR---------------IETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~---------------iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
.++|+.++.-...+.|++ +.+|..--.+|++.|+|-.|+.++.++..++|+++..+..+-..+..
T Consensus 163 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 242 (336)
T 1p5q_A 163 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA 242 (336)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 678999999999999988 79999888999999999999999999999999999887666555443
No 118
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=93.21 E-value=0.23 Score=44.56 Aligned_cols=74 Identities=14% Similarity=0.013 Sum_probs=63.6
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
|.-+....+ .++|+.++.-.....|++.++|..--.+|++.|+|-.|+.++.++..++|+++..+..+......
T Consensus 64 g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 137 (568)
T 2vsy_A 64 GRVRWTQQR-HAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR 137 (568)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 333333334 79999999999999999999999999999999999999999999999999999988777776554
No 119
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=93.21 E-value=1.1 Score=38.39 Aligned_cols=65 Identities=12% Similarity=0.077 Sum_probs=58.2
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
=.++|+.++.-.....|+ ..+|..--.+|++.|.|-.|+.++.++..++|+++.++..+......
T Consensus 258 ~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 258 NLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI 322 (537)
T ss_dssp CHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Confidence 358999999999999999 99999999999999999999999999999999999887776665543
No 120
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=92.88 E-value=0.19 Score=42.80 Aligned_cols=66 Identities=9% Similarity=0.029 Sum_probs=58.9
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
.=.++|+.++.-.....|++..+|..--.+|.+.|++-.|+..+.++..++|+++.++..+ .|..+
T Consensus 429 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~ 494 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI-TFAEA 494 (514)
T ss_dssp THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH-HHHHH
Confidence 4578999999999999999999999999999999999999999999999999999987654 44443
No 121
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=92.44 E-value=0.48 Score=37.06 Aligned_cols=68 Identities=15% Similarity=0.015 Sum_probs=55.0
Q ss_pred chHHHHHHhHHHHHHHccchHhHh-----------------HHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETH-----------------LMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIR 132 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~-----------------llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vr 132 (201)
.-.++|+..++-+....|++..++ ...-++|+++|+|--|+.++.++..+.|++|..-.....
T Consensus 110 ~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 189 (225)
T 2yhc_A 110 QQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPL 189 (225)
T ss_dssp HHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHH
Confidence 357899999999999999988776 344578999999999999999999999999866555444
Q ss_pred HHHHH
Q psy7864 133 LALFI 137 (201)
Q Consensus 133 f~~~v 137 (201)
+..+.
T Consensus 190 l~~~~ 194 (225)
T 2yhc_A 190 MENAY 194 (225)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 122
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=92.33 E-value=1.9 Score=40.36 Aligned_cols=66 Identities=11% Similarity=-0.094 Sum_probs=59.2
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
=.++|+.++.-.....|++.++|..--.+|++.|+|-.|+.++.+|.+++|+++..+..+-.....
T Consensus 448 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~ 513 (681)
T 2pzi_A 448 DVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL 513 (681)
T ss_dssp CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 378999999999999999999999888999999999999999999999999999988776665543
No 123
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=92.29 E-value=0.73 Score=39.12 Aligned_cols=63 Identities=16% Similarity=0.060 Sum_probs=48.7
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
.++|+.++.-.....|++..+|...-.+|++.|.|-.|+.++..+..++|+++.++..+....
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 382 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEIL 382 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHH
Confidence 567888888888888888888888788888888888888888888888888877765554443
No 124
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=92.07 E-value=0.62 Score=36.82 Aligned_cols=65 Identities=12% Similarity=0.072 Sum_probs=53.2
Q ss_pred chHHHHHHhHHHHHHHccchHhHh-----------------HHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETH-----------------LMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIR 132 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~-----------------llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vr 132 (201)
.=.++|+.++.-+....|++..++ ...-.+|++.|.|--|+.++..+..++|+++.....+..
T Consensus 111 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 190 (261)
T 3qky_A 111 TDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVG 190 (261)
T ss_dssp HHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 457899999999999999987777 445788999999999999999999999998765444444
Q ss_pred HH
Q psy7864 133 LA 134 (201)
Q Consensus 133 f~ 134 (201)
+.
T Consensus 191 l~ 192 (261)
T 3qky_A 191 AM 192 (261)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 125
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.90 E-value=1.1 Score=31.56 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=49.9
Q ss_pred HHHHHHhHHHHHHH-------ccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLL-------AKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 72 LeeA~KfL~pL~~~-------a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
...|+.|+.--... ...+.+.+..-..+|++.|.+-.|+..+..|.+++|+|+.+...+.-|...
T Consensus 21 y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~~~ 92 (104)
T 2v5f_A 21 YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYI 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHH
Confidence 45666666655443 345778888777899999999999999999999999999987666544443
No 126
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=91.80 E-value=0.39 Score=42.19 Aligned_cols=60 Identities=8% Similarity=-0.081 Sum_probs=36.8
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLI 131 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~v 131 (201)
+++|..++.-..+..|++..+|..--.+|.+.|++-.|+..+.++..++|+++..+..+.
T Consensus 389 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 448 (597)
T 2xpi_A 389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG 448 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 566666666666666666666666666666666666666666666666666555544443
No 127
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=91.77 E-value=1 Score=34.94 Aligned_cols=54 Identities=9% Similarity=0.061 Sum_probs=41.8
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTL 126 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~l 126 (201)
.++|+.++.-..+..|++.++|..--.+|++.|.|-.|+.++.++.. .|.+|.+
T Consensus 19 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~ 72 (272)
T 3u4t_A 19 YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKA 72 (272)
T ss_dssp HHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTC
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhH
Confidence 67788888888888888888887666788888888888888888877 4455554
No 128
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=91.76 E-value=0.43 Score=40.63 Aligned_cols=64 Identities=20% Similarity=0.173 Sum_probs=56.2
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRL 133 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf 133 (201)
.-.++|.+++.-.....|+...+|...-.+|.+.|++-.|+.++.++..++|+++.+|..+-..
T Consensus 227 ~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290 (472)
T ss_dssp ---CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999999999988766543
No 129
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=91.67 E-value=0.82 Score=35.69 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=49.4
Q ss_pred HHHHHHhHHHHHHHccch---HhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchH
Q psy7864 72 LEQAVKFLSPLQLLAKDR---IETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTL 126 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~---iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~l 126 (201)
.++|+..+.-+....|++ .++|..--.+|++.|.|-.|+.++.++.+++|+++.+
T Consensus 20 ~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~ 77 (225)
T 2yhc_A 20 WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 77 (225)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH
Confidence 689999999999988875 4678877899999999999999999999999999864
No 130
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=91.64 E-value=0.91 Score=36.00 Aligned_cols=67 Identities=13% Similarity=0.089 Sum_probs=55.9
Q ss_pred chhhccccchH--HHHHHhHHHHHHHc-c-chHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHH
Q psy7864 62 PDKLAKTEEPL--EQAVKFLSPLQLLA-K-DRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHT 128 (201)
Q Consensus 62 GekL~~~~dPL--eeA~KfL~pL~~~a-~-~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~ 128 (201)
|--|+++++|- .+++.+|.-+.... | ++.+.+..--=.|+|.+.|--|++++.++..++|+|+.--.
T Consensus 39 a~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 39 AWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 55677877666 59999999999988 7 66787775556779999999999999999999999986653
No 131
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=91.09 E-value=1.6 Score=40.83 Aligned_cols=61 Identities=10% Similarity=-0.095 Sum_probs=54.3
Q ss_pred HHHHHHhHHHHH--------HHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHH
Q psy7864 72 LEQAVKFLSPLQ--------LLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIR 132 (201)
Q Consensus 72 LeeA~KfL~pL~--------~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vr 132 (201)
.++|+..+.-.. ...|++.++|..--.+|++.|+|-.|+.++.++.+++|+++..|..+-.
T Consensus 407 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 475 (681)
T 2pzi_A 407 PVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAV 475 (681)
T ss_dssp HHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 589999999988 8889999999999999999999999999999999999999887655443
No 132
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=90.70 E-value=0.57 Score=41.63 Aligned_cols=64 Identities=16% Similarity=0.048 Sum_probs=55.5
Q ss_pred HHHHHHhHHHHHHHccch---------------HhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDR---------------IETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~---------------iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
.++|+.++.-.+.+.|++ +.+|.---.+|++.++|-.|+.++.++..++|+++..+.++-..+.
T Consensus 284 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~ 362 (457)
T 1kt0_A 284 YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL 362 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 678999999999988887 7899988899999999999999999999999999887765554443
No 133
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=90.58 E-value=1.1 Score=38.58 Aligned_cols=62 Identities=16% Similarity=-0.012 Sum_probs=54.4
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHhhhcc--chhHHHHHHHHHhhcCCCCchH--HHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQ--KPLLMLQSVKRAWALDPKNPTL--HTCLI 131 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~--K~LLaLqaL~~a~~id~~~P~l--h~~~v 131 (201)
+--++|+....-++..+|++..+|..-.+|...-+ .|--+|.++..+..++|.+..+ |++.+
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~i 112 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLI 112 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHH
Confidence 44478999999999999999999999999999888 8999999999999999999654 65544
No 134
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=90.39 E-value=0.8 Score=41.12 Aligned_cols=71 Identities=13% Similarity=-0.039 Sum_probs=60.8
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRL 133 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf 133 (201)
|.-+....+ .++|+.++.-..+..|++..+|..--.+|.+.|+|-.|+.++.++.+++|+++..+..+...
T Consensus 47 g~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 47 SLAYLRTEC-YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred HHHHHHhcC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 333333333 68999999999999999999999999999999999999999999999999999887766554
No 135
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=90.09 E-value=0.74 Score=40.00 Aligned_cols=64 Identities=16% Similarity=-0.014 Sum_probs=53.8
Q ss_pred HHHHHHhHHHHHH----------------HccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQL----------------LAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 72 LeeA~KfL~pL~~----------------~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
.++|+..+.-.+. ..|.+..+|.---.+|++.++|-.|+.++.+|..++|+++..+..+-..+.
T Consensus 239 ~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 318 (370)
T 1ihg_A 239 WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ 318 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 5677777777776 677888999989999999999999999999999999999988866655544
No 136
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=89.99 E-value=1.8 Score=35.40 Aligned_cols=63 Identities=8% Similarity=0.021 Sum_probs=35.6
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhh-ccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFR-RQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~R-k~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
+++|.+.+.-.....|.+...|+..-.+..+ .|.+-.|..++.++..++|+++.++...+.|.
T Consensus 150 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 213 (308)
T 2ond_A 150 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL 213 (308)
T ss_dssp HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4566666666666666655555533222222 45666666666666666666666665555554
No 137
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=89.59 E-value=0.66 Score=30.97 Aligned_cols=48 Identities=10% Similarity=0.028 Sum_probs=40.3
Q ss_pred hHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 89 RIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 89 ~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
+.++|..--.+|++.|+|-.|+.++.++..++|+++.++..+......
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 50 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK 50 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 456777777899999999999999999999999999988776665443
No 138
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=89.59 E-value=0.69 Score=29.75 Aligned_cols=49 Identities=16% Similarity=0.140 Sum_probs=41.2
Q ss_pred cchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 87 KDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 87 ~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
++...+|..--.+|++.+.|-.|+.++.++..++|+++.++..+.....
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 54 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 54 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3456778877789999999999999999999999999988877666554
No 139
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=88.84 E-value=1.2 Score=37.80 Aligned_cols=64 Identities=14% Similarity=0.038 Sum_probs=53.8
Q ss_pred HHHHHHhHHHHHHHccchH-----------------hHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRI-----------------ETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~i-----------------et~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
.++|+.++.-...+.|++. .+|..--.+|++.+.|-.|+.++.++..++|+++..+.++-..+
T Consensus 195 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~ 274 (338)
T 2if4_A 195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAK 274 (338)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5778888888888888876 48888888999999999999999999999999998876655544
Q ss_pred H
Q psy7864 135 L 135 (201)
Q Consensus 135 ~ 135 (201)
.
T Consensus 275 ~ 275 (338)
T 2if4_A 275 A 275 (338)
T ss_dssp H
T ss_pred H
Confidence 3
No 140
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=88.01 E-value=3.3 Score=36.51 Aligned_cols=66 Identities=12% Similarity=0.072 Sum_probs=59.7
Q ss_pred cchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q psy7864 69 EEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL 135 (201)
Q Consensus 69 ~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~ 135 (201)
...+++|...+.-.+...|++...|..--+++++.|.+--|...+.++..+.| ++.+....++|..
T Consensus 25 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVR 90 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999 6778777777664
No 141
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=87.67 E-value=3.2 Score=36.63 Aligned_cols=65 Identities=14% Similarity=0.058 Sum_probs=56.3
Q ss_pred HHHHHhHHHHHH-HccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCc-hHHHHHHHHHHHH
Q psy7864 73 EQAVKFLSPLQL-LAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNP-TLHTCLIRLALFI 137 (201)
Q Consensus 73 eeA~KfL~pL~~-~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P-~lh~~~vrf~~~v 137 (201)
++|...+.--.. +.|++...|..--.++.+.|.+-.|..+..++..++|.+| .++.....|....
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh
Confidence 378888888876 7999999999999999999999999999999999999997 5788887776443
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=86.40 E-value=0.42 Score=39.30 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=53.9
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCc
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNP 124 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P 124 (201)
|.-+.... =.++|+..+.-.....|++..+|..--.+|++.|+|-.|+..+.++..++|+++
T Consensus 45 a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 45 ALCYLKMQ-QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 33333333 378999999999999999999999999999999999999999999999999874
No 143
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=85.59 E-value=0.9 Score=36.08 Aligned_cols=67 Identities=6% Similarity=-0.083 Sum_probs=54.8
Q ss_pred chHHHHHHhHHHHHHH-------ccchHhHh----HHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLL-------AKDRIETH----LMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALF 136 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~-------a~~~iet~----llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~ 136 (201)
.-.++|+..+.--+++ .|++..+| .---.++..-|+|--|+.|..+|..|+|++..+-.-+-+..+.
T Consensus 71 gr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~ 148 (159)
T 2hr2_A 71 RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV 148 (159)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 3578999999999999 99999999 6666788899999999999999999999886654444444433
No 144
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=85.35 E-value=2 Score=36.99 Aligned_cols=62 Identities=13% Similarity=0.056 Sum_probs=51.5
Q ss_pred chHHHHHHhHHHHHHHccchHhHhHHhHhHh----hhc---cchhHHHHHHHHHhhcCCCCc--hHHHHHH
Q psy7864 70 EPLEQAVKFLSPLQLLAKDRIETHLMAFEIY----FRR---QKPLLMLQSVKRAWALDPKNP--TLHTCLI 131 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~~~iet~llaFEVy----~Rk---~K~LLaLqaL~~a~~id~~~P--~lh~~~v 131 (201)
.-+++++.|+..++...|++..+|..-..|. .+- +.+--+|.++..+..+||.|. |.|++.|
T Consensus 83 ~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~v 153 (306)
T 3dra_A 83 RNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWL 153 (306)
T ss_dssp SCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4689999999999999999999998888777 554 678889999999999999874 5576644
No 145
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=84.83 E-value=1.7 Score=33.25 Aligned_cols=49 Identities=10% Similarity=-0.053 Sum_probs=43.0
Q ss_pred hHHHHHHhHHHHHHH--------ccchHhHhHHhHhHhhhccchhHHHHHHHHHhhc
Q psy7864 71 PLEQAVKFLSPLQLL--------AKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWAL 119 (201)
Q Consensus 71 PLeeA~KfL~pL~~~--------a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~i 119 (201)
=.++|+.++.-.... .|....+|..--.+|+..|+|-.|+.++.++..+
T Consensus 100 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467888888887777 4788999998999999999999999999999888
No 146
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=83.88 E-value=1.8 Score=33.90 Aligned_cols=49 Identities=10% Similarity=-0.083 Sum_probs=42.7
Q ss_pred hHHHHHHhHHHHHHHc--------cchHhHhHHhHhHhhhccchhHHHHHHHHHhhc
Q psy7864 71 PLEQAVKFLSPLQLLA--------KDRIETHLMAFEIYFRRQKPLLMLQSVKRAWAL 119 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a--------~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~i 119 (201)
=.++|+.++.-..... +....++..--.+|++.|+|-.|+.++.++..+
T Consensus 126 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 126 KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4678888888888775 778888988899999999999999999999887
No 147
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=83.88 E-value=3.2 Score=31.00 Aligned_cols=54 Identities=11% Similarity=0.046 Sum_probs=47.5
Q ss_pred hHHHHHHhHHHHHHHccchH----------------hHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCc
Q psy7864 71 PLEQAVKFLSPLQLLAKDRI----------------ETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNP 124 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~i----------------et~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P 124 (201)
=.++|+.++.-.....|++. .+|..--.+|++.|+|-.|+.++.++..++|++.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 37899999999999666544 9999888999999999999999999999999764
No 148
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=83.39 E-value=10 Score=32.01 Aligned_cols=61 Identities=16% Similarity=0.072 Sum_probs=48.6
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhh---ccchhHHHHHHHHHhhcCCCCchHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFR---RQKPLLMLQSVKRAWALDPKNPTLHTCLI 131 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~R---k~K~LLaLqaL~~a~~id~~~P~lh~~~v 131 (201)
=.++|+.++.-.++..|++.++|..--.++++ .+++--|+.++++|..++|+++.++..+.
T Consensus 153 ~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~ 216 (472)
T 4g1t_A 153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA 216 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 46899999999999999999988755555544 45667889999999999999988775543
No 149
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=83.19 E-value=1.7 Score=37.97 Aligned_cols=52 Identities=10% Similarity=-0.069 Sum_probs=46.4
Q ss_pred chHHHHHHhHHHHHHHcc--chHhHhHHhHhHhhhccchhHHHHHHHHHhhcCC
Q psy7864 70 EPLEQAVKFLSPLQLLAK--DRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDP 121 (201)
Q Consensus 70 dPLeeA~KfL~pL~~~a~--~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~ 121 (201)
.=.++|+++|.--...+| ++++.+.+.-+||++.|++-+|.+.++.+.+++|
T Consensus 114 g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~ 167 (310)
T 3mv2_B 114 GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE 167 (310)
T ss_dssp TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 457899999988877776 8999999999999999999999999999999988
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=82.57 E-value=3.4 Score=36.17 Aligned_cols=60 Identities=13% Similarity=0.001 Sum_probs=49.7
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccc--hhHHHHHHHHHhhcCCCC--chHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQK--PLLMLQSVKRAWALDPKN--PTLHTCLI 131 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K--~LLaLqaL~~a~~id~~~--P~lh~~~v 131 (201)
+++++.|+..++...|++..+|.----|..+-+. |--+|.++.++..+||.| .|.|++.|
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~v 153 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFV 153 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8899999999999999999999877777766664 678899999999999986 46666644
No 151
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=82.22 E-value=8 Score=30.49 Aligned_cols=65 Identities=11% Similarity=-0.007 Sum_probs=52.4
Q ss_pred chhhccccchHHHHHHhHHHHHHHccc-------hHh-----HhHHhHhHhhhccchhHHHHHHHHHhhc-------CCC
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKD-------RIE-----THLMAFEIYFRRQKPLLMLQSVKRAWAL-------DPK 122 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~-------~ie-----t~llaFEVy~Rk~K~LLaLqaL~~a~~i-------d~~ 122 (201)
|..+.... =.++|+....--+++.|+ +.. .|.----++..-|+|--|+.|..+|..+ +|+
T Consensus 18 G~~l~~~g-~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 18 AQRQLVAG-EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHT-CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHCC-CHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 44444322 368888888888888888 444 8887778899999999999999999999 999
Q ss_pred CchHH
Q psy7864 123 NPTLH 127 (201)
Q Consensus 123 ~P~lh 127 (201)
++..|
T Consensus 97 ~~~A~ 101 (159)
T 2hr2_A 97 EGKLW 101 (159)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 98777
No 152
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=80.07 E-value=3.8 Score=36.28 Aligned_cols=52 Identities=12% Similarity=0.028 Sum_probs=32.1
Q ss_pred HHHHHhHHHHHHHccchHhHhHHhHhHhhhccc-hhHHHHHHHHHhhcCCCCc
Q psy7864 73 EQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQK-PLLMLQSVKRAWALDPKNP 124 (201)
Q Consensus 73 eeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K-~LLaLqaL~~a~~id~~~P 124 (201)
++|+++..-++..+|++..+|..-..|...-++ +--+|.++..+..++|.+.
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny 123 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY 123 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH
Confidence 456666666666666666666666666655553 5566666666666666654
No 153
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.96 E-value=2.5 Score=34.45 Aligned_cols=66 Identities=12% Similarity=0.000 Sum_probs=45.2
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHh-------HhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIE-------THLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHT 128 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~ie-------t~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~ 128 (201)
|.-+....+ .++|+.++.-.....|++.. +|.-...+|.+.|.+-.|+.++.++..++|+++....
T Consensus 165 g~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 165 ADLKALDGQ-YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHhCC-HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 333444443 68999999999999887654 3455668899999999999999999999999876543
No 154
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=79.27 E-value=2.8 Score=27.66 Aligned_cols=42 Identities=7% Similarity=-0.044 Sum_probs=34.6
Q ss_pred hHhHhhhccchhHHHHHHHHHhhcCCCCch-HHHHHHHHHHHH
Q psy7864 96 AFEIYFRRQKPLLMLQSVKRAWALDPKNPT-LHTCLIRLALFI 137 (201)
Q Consensus 96 aFEVy~Rk~K~LLaLqaL~~a~~id~~~P~-lh~~~vrf~~~v 137 (201)
.-.+|++.|+|-.|+.++.++..++|+++. ++..+-......
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~ 48 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKL 48 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHc
Confidence 346788999999999999999999999998 887766655443
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=78.90 E-value=4.9 Score=28.62 Aligned_cols=65 Identities=11% Similarity=0.133 Sum_probs=45.2
Q ss_pred chhhccccchHHHHHHhHHHHHHHccchHhHhHHhH-------hHhhhccchhHHHHHHHHHhhcCCCCchHHH
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAF-------EIYFRRQKPLLMLQSVKRAWALDPKNPTLHT 128 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~iet~llaF-------EVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~ 128 (201)
|.-+....+ .++|+.++.-..+..|++...|..-. .+|...+.|-.|+.+..++..++|+ |.+..
T Consensus 49 g~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~ 120 (127)
T 4gcn_A 49 AAVYFEEKK-FAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVK 120 (127)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHhhh-HHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHH
Confidence 333444333 68999999999999888766554433 4566677888888888888888774 55443
No 156
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=78.86 E-value=9.4 Score=28.93 Aligned_cols=64 Identities=20% Similarity=0.113 Sum_probs=49.8
Q ss_pred hHHHHHHhHHHHHHHc--------cchHhHhHHhHhHhhhccchhHHHHHHHHHhhc-----CCCCchHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLA--------KDRIETHLMAFEIYFRRQKPLLMLQSVKRAWAL-----DPKNPTLHTCLIRLA 134 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a--------~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~i-----d~~~P~lh~~~vrf~ 134 (201)
=.++|+.++.-..... |....++..--.+|++.|+|-.|+.++.++..+ ++++|........+.
T Consensus 58 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 134 (283)
T 3edt_B 58 KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLA 134 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3678888888888774 778888998889999999999999999999888 355665544444433
No 157
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=77.17 E-value=5.7 Score=36.73 Aligned_cols=62 Identities=13% Similarity=-0.017 Sum_probs=53.9
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhcc--chhHHHHHHHHHhhcCCCC--chHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQ--KPLLMLQSVKRAWALDPKN--PTLHTCLIR 132 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~--K~LLaLqaL~~a~~id~~~--P~lh~~~vr 132 (201)
.+++|+.|+.......|++..+|.----|+.+-+ .|--+|.++.++..+||.| .|.|++.|-
T Consensus 88 ~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l 153 (567)
T 1dce_A 88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA 153 (567)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHH
Confidence 3999999999999999999999998888888888 5588999999999999986 677776553
No 158
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=76.34 E-value=5 Score=37.08 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=52.9
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccc----------hhHHHHHHHHHhhcCCCCc--hHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQK----------PLLMLQSVKRAWALDPKNP--TLHTCLI 131 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K----------~LLaLqaL~~a~~id~~~P--~lh~~~v 131 (201)
-++|+++..-+...+|++..+|..-..+...-++ |--+|.++..+..++|.+. |.|++.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 116 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3689999999999999999999999999988887 8899999999999999985 5576644
No 159
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=75.97 E-value=7.8 Score=30.19 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=50.6
Q ss_pred hhccccchHH--HHHHhHHHHHHHcc-chHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchH
Q psy7864 64 KLAKTEEPLE--QAVKFLSPLQLLAK-DRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTL 126 (201)
Q Consensus 64 kL~~~~dPLe--eA~KfL~pL~~~a~-~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~l 126 (201)
-|+++.++-+ .++.+|.-|...+| ...+.+..--==|+|-|.|--|++++..+..++|+|...
T Consensus 49 ~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 49 GLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4666666644 79999999999988 456666554455679999999999999999999999754
No 160
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=72.92 E-value=6.6 Score=30.49 Aligned_cols=49 Identities=10% Similarity=-0.010 Sum_probs=43.6
Q ss_pred hHHHHHHhHHHHHHH--------ccchHhHhHHhHhHhhhccchhHHHHHHHHHhhc
Q psy7864 71 PLEQAVKFLSPLQLL--------AKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWAL 119 (201)
Q Consensus 71 PLeeA~KfL~pL~~~--------a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~i 119 (201)
=.++|+.++.-.... .|....+|..--.+|++.|+|-.|+.++..+..+
T Consensus 168 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 368899999988888 7888899999999999999999999999998865
No 161
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=72.64 E-value=6.7 Score=30.07 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=48.6
Q ss_pred hhccccchHH--HHHHhHHHHHHHc-c-chHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHH
Q psy7864 64 KLAKTEEPLE--QAVKFLSPLQLLA-K-DRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLH 127 (201)
Q Consensus 64 kL~~~~dPLe--eA~KfL~pL~~~a-~-~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh 127 (201)
-|+++.+|-+ .++.+|.-|..-+ | .+.+....--=-|+|-|.|--|++++.....++|+|+..-
T Consensus 44 ~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 44 CLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 4667766655 7999999888876 5 3444444333356799999999999999999999997643
No 162
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=71.78 E-value=5 Score=31.13 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=38.7
Q ss_pred hHHHHHHhHHHHHHHccch----HhHhHHhHhHhhhccchhHHHHHHHHHhhc
Q psy7864 71 PLEQAVKFLSPLQLLAKDR----IETHLMAFEIYFRRQKPLLMLQSVKRAWAL 119 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~----iet~llaFEVy~Rk~K~LLaLqaL~~a~~i 119 (201)
=.++|+.++.-.....|++ ..+|..--.+|++.|.|-.|+.++.++..+
T Consensus 20 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 72 (338)
T 3ro2_A 20 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 72 (338)
T ss_dssp CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3678888888888888876 456667777888888888888888887666
No 163
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=71.52 E-value=11 Score=33.27 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=54.7
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhc-c-chhHHHHHHHHHhhcCCCC--chHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRR-Q-KPLLMLQSVKRAWALDPKN--PTLHTCLIR 132 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk-~-K~LLaLqaL~~a~~id~~~--P~lh~~~vr 132 (201)
.+++++.|+..++...|++..+|.----|..+- + .+--+|.++.++..+||.| .|.|++.|-
T Consensus 104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl 169 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLY 169 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 589999999999999999999999888888776 6 8889999999999999987 567877543
No 164
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=70.89 E-value=17 Score=29.39 Aligned_cols=56 Identities=4% Similarity=-0.124 Sum_probs=46.7
Q ss_pred hHHHHHHhHHHHHHHccch------HhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchH
Q psy7864 71 PLEQAVKFLSPLQLLAKDR------IETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTL 126 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~------iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~l 126 (201)
=.++|+.++.--+.+.|+. ..+|.-.-.+|++.|+|-.|+.++.++..++|+++..
T Consensus 133 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (292)
T 1qqe_A 133 DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence 3688888888888877653 4567777789999999999999999999999988753
No 165
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=70.77 E-value=7.4 Score=33.99 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=50.9
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccc----------hhHHHHHHHHHhhcCCCCc--hHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQK----------PLLMLQSVKRAWALDPKNP--TLHTCLIR 132 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K----------~LLaLqaL~~a~~id~~~P--~lh~~~vr 132 (201)
-++|+.+..-++..+|++..+|..-..|...-++ |--+|.++..+..++|.++ |.|++.+-
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3579999999999999999999999888877665 5678999999999999986 44766543
No 166
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=66.04 E-value=13 Score=30.18 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=30.9
Q ss_pred HHHHHHhHHHHHHHccch------HhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCch
Q psy7864 72 LEQAVKFLSPLQLLAKDR------IETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPT 125 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~------iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~ 125 (201)
.++|+.++.-.....++. ..+++..-.+|++.|.|-.|+.++.++. ++|+.+.
T Consensus 171 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 171 FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 455666666555554432 2244444556666677777777777776 6666543
No 167
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=65.35 E-value=7.4 Score=34.16 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=45.9
Q ss_pred hHHHHHHhHHHHHHHccch-HhHhHHhHhHhhhc-cchhHHHHHHHHHhhcCCCC-chH
Q psy7864 71 PLEQAVKFLSPLQLLAKDR-IETHLMAFEIYFRR-QKPLLMLQSVKRAWALDPKN-PTL 126 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~-iet~llaFEVy~Rk-~K~LLaLqaL~~a~~id~~~-P~l 126 (201)
..+.|..+++--+.++|+. ++++..--+.|+|. +.+-.+.+.|.++.+++|.. |..
T Consensus 219 d~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 219 GMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHN 277 (301)
T ss_dssp CHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSC
T ss_pred CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCCh
Confidence 4678888888888888875 89988888888885 88888899999998888875 654
No 168
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=62.87 E-value=8.4 Score=31.73 Aligned_cols=49 Identities=14% Similarity=0.064 Sum_probs=42.4
Q ss_pred hHHHHHHhHHHHHHHccchH----hHhHHhHhHhhhccchhHHHHHHHHHhhc
Q psy7864 71 PLEQAVKFLSPLQLLAKDRI----ETHLMAFEIYFRRQKPLLMLQSVKRAWAL 119 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~i----et~llaFEVy~Rk~K~LLaLqaL~~a~~i 119 (201)
=.++|+.++.-.+...|++. .+|..--.+|++.|.|-.|+.++.++..+
T Consensus 63 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (411)
T 4a1s_A 63 DCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115 (411)
T ss_dssp CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 46899999999999999876 46777778999999999999999988777
No 169
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=61.70 E-value=10 Score=29.25 Aligned_cols=48 Identities=17% Similarity=0.091 Sum_probs=24.9
Q ss_pred HHHHHhHHHHHHHccch------HhHhHHhHhHhhhccchhHHHHHHHHHhhcC
Q psy7864 73 EQAVKFLSPLQLLAKDR------IETHLMAFEIYFRRQKPLLMLQSVKRAWALD 120 (201)
Q Consensus 73 eeA~KfL~pL~~~a~~~------iet~llaFEVy~Rk~K~LLaLqaL~~a~~id 120 (201)
++|..++.-.....++. ..++..--.+|++.|+|-.|+..+..+..+.
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 240 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 44555555444444433 4444555555555555555555555555543
No 170
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=60.28 E-value=14 Score=29.85 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=36.1
Q ss_pred HHHHHHhHHHHHHHccch------HhHhHHhHhHhhhccchhHHHHHHHHHhhcCC
Q psy7864 72 LEQAVKFLSPLQLLAKDR------IETHLMAFEIYFRRQKPLLMLQSVKRAWALDP 121 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~------iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~ 121 (201)
.++|..++.-.....++. ..++..--.+|++.|+|-.|+..+..+..+.+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 567777777776666654 66677777788888888888888877777744
No 171
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=60.09 E-value=11 Score=30.51 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=43.7
Q ss_pred chhhccccchHHHHHHhHHHHHHHccch----HhHhHHhHhHhhhccchhHHHHHHHHHhhc
Q psy7864 62 PDKLAKTEEPLEQAVKFLSPLQLLAKDR----IETHLMAFEIYFRRQKPLLMLQSVKRAWAL 119 (201)
Q Consensus 62 GekL~~~~dPLeeA~KfL~pL~~~a~~~----iet~llaFEVy~Rk~K~LLaLqaL~~a~~i 119 (201)
|..+....+ .++|+.++.-.....|++ ..+|..--.+|+..|.|-.|+.++.++..+
T Consensus 16 g~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 76 (406)
T 3sf4_A 16 GERLCKSGD-CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 76 (406)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 444444333 678889998888888886 356777778999999999999998888776
No 172
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=59.59 E-value=10 Score=26.39 Aligned_cols=42 Identities=12% Similarity=0.016 Sum_probs=33.8
Q ss_pred ccchHhHhHHhHhHhhhccc---hhHHHHHHHHHhhcCCCCchHH
Q psy7864 86 AKDRIETHLMAFEIYFRRQK---PLLMLQSVKRAWALDPKNPTLH 127 (201)
Q Consensus 86 a~~~iet~llaFEVy~Rk~K---~LLaLqaL~~a~~id~~~P~lh 127 (201)
.|++.+.|..--++++..+. .-.+.+.|.+|.++||+|+.--
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~ 46 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAAL 46 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHH
Confidence 46778888888888866554 5789999999999999998654
No 173
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=59.14 E-value=36 Score=26.35 Aligned_cols=46 Identities=22% Similarity=0.204 Sum_probs=22.1
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhh----ccchhHHHHHHHHHhhc
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFR----RQKPLLMLQSVKRAWAL 119 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~R----k~K~LLaLqaL~~a~~i 119 (201)
.++|+.++.-..+.. +..+|..--.+|.+ .+.+-.|+.++.++..+
T Consensus 58 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 107 (273)
T 1ouv_A 58 LKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL 107 (273)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc
Confidence 344555554444432 34444444445555 55555555555555444
No 174
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=58.76 E-value=29 Score=27.26 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=47.2
Q ss_pred hccccch--HHHHHHhHHHHHHHccc-hHhHhH-HhHhHhhhccchhHHHHHHHHHhhcCCCCchH
Q psy7864 65 LAKTEEP--LEQAVKFLSPLQLLAKD-RIETHL-MAFEIYFRRQKPLLMLQSVKRAWALDPKNPTL 126 (201)
Q Consensus 65 L~~~~dP--LeeA~KfL~pL~~~a~~-~iet~l-laFEVy~Rk~K~LLaLqaL~~a~~id~~~P~l 126 (201)
|++..++ ..+++.+|.-|..-+|. ..+... +|+ =|+|-|.|--|++++.....++|+|++.
T Consensus 49 Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAv-g~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 49 LIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTI-GCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHH-HHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHH-HHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 5555554 46899999999998884 444433 444 4669999999999999999999999754
No 175
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=55.15 E-value=24 Score=30.55 Aligned_cols=68 Identities=15% Similarity=0.076 Sum_probs=53.8
Q ss_pred ccchHHHHHHhHHHHHHHccchHhH-hHHhHhHhhhccchhHHHHHHHHHhhc----------CCCCchHHHHHHHHHHH
Q psy7864 68 TEEPLEQAVKFLSPLQLLAKDRIET-HLMAFEIYFRRQKPLLMLQSVKRAWAL----------DPKNPTLHTCLIRLALF 136 (201)
Q Consensus 68 ~~dPLeeA~KfL~pL~~~a~~~iet-~llaFEVy~Rk~K~LLaLqaL~~a~~i----------d~~~P~lh~~~vrf~~~ 136 (201)
..+=..+|+.++.-|.+-.|++-.+ .++. +|++.|+|=-|-+.|..+.++ ||+||.....+|-+...
T Consensus 190 g~~~~q~A~~~f~El~~~~p~~~~~~lLln--~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~ 267 (310)
T 3mv2_B 190 NKETATSNFYYYEELSQTFPTWKTQLGLLN--LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALM 267 (310)
T ss_dssp TCSTTTHHHHHHHHHHTTSCSHHHHHHHHH--HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhCCCcccHHHHHH--HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHH
Confidence 3456889999999998888873222 2233 999999999999999988777 68899999888888765
Q ss_pred H
Q psy7864 137 I 137 (201)
Q Consensus 137 v 137 (201)
+
T Consensus 268 l 268 (310)
T 3mv2_B 268 Q 268 (310)
T ss_dssp T
T ss_pred h
Confidence 4
No 176
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=53.79 E-value=25 Score=31.52 Aligned_cols=60 Identities=12% Similarity=0.017 Sum_probs=47.3
Q ss_pred cchHHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHH
Q psy7864 69 EEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTC 129 (201)
Q Consensus 69 ~dPLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~ 129 (201)
..=.++|+..+.--..++|+ ..+|.+.-.+|.-.|.+-.|+..+.+|..++|..|.+.-|
T Consensus 290 ~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~ 349 (372)
T 3ly7_A 290 KGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWI 349 (372)
T ss_dssp HTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHH
Confidence 34578888888888888865 4677777788888899999999999999998888766533
No 177
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=49.53 E-value=25 Score=28.82 Aligned_cols=49 Identities=8% Similarity=-0.115 Sum_probs=42.7
Q ss_pred hHHHHHHhHHHHHHH------ccchHhHhHHhHhHhhhccchhHHHHHHHHHhhc
Q psy7864 71 PLEQAVKFLSPLQLL------AKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWAL 119 (201)
Q Consensus 71 PLeeA~KfL~pL~~~------a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~i 119 (201)
=.++|+.++.-...+ .+....+|..--.+|.+.|.|-.|+.++.++..+
T Consensus 101 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 155 (411)
T 4a1s_A 101 DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL 155 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 467888888887777 5778899999999999999999999999998888
No 178
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.56 E-value=32 Score=28.47 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=39.2
Q ss_pred HHHHHHhHHHHHHHc------cchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCC
Q psy7864 72 LEQAVKFLSPLQLLA------KDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDP 121 (201)
Q Consensus 72 LeeA~KfL~pL~~~a------~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~ 121 (201)
.++|..++.-++... +..+++|+.--.+|+..|.|-.|..++.++..+.+
T Consensus 151 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 151 YKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 567888888777663 34677888888999999999999888888877743
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=45.98 E-value=36 Score=22.89 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=38.8
Q ss_pred HHHHHHhHHHHHHHccc------hHhHhHHhHhHhhhccchhHHHHHHHHHhhcC
Q psy7864 72 LEQAVKFLSPLQLLAKD------RIETHLMAFEIYFRRQKPLLMLQSVKRAWALD 120 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~------~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id 120 (201)
.++|+.++.-...+.++ ...++..--.+|+..|.|-.|+.++.++..+.
T Consensus 65 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 119 (164)
T 3ro3_A 65 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 57777777777766655 37888888889999999999999988887774
No 180
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=45.07 E-value=37 Score=27.47 Aligned_cols=54 Identities=17% Similarity=0.086 Sum_probs=41.7
Q ss_pred hHHHHHHhHHHHHHHccch------HhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCc
Q psy7864 71 PLEQAVKFLSPLQLLAKDR------IETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNP 124 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~------iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P 124 (201)
=.++|+.++.--+.+.++. ..++.-.-.+|++.|+|-.|+.++.++..+.+.++
T Consensus 130 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 189 (307)
T 2ifu_A 130 DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME 189 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 3577888887777766542 46666667899999999999999999998876554
No 181
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=43.90 E-value=85 Score=24.15 Aligned_cols=46 Identities=17% Similarity=0.139 Sum_probs=24.2
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhh----ccchhHHHHHHHHHhhc
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFR----RQKPLLMLQSVKRAWAL 119 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~R----k~K~LLaLqaL~~a~~i 119 (201)
.++|+.++.-..+.. ...++..--.+|.+ .+.+-.|+.++.++..+
T Consensus 130 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 130 FKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 455555555555433 34444444455555 55555666655555544
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=43.49 E-value=36 Score=22.88 Aligned_cols=51 Identities=16% Similarity=-0.050 Sum_probs=40.2
Q ss_pred HHHHHHhHHHHHHHccchH------hHhHHhHhHhhhccchhHHHHHHHHHhhcCCC
Q psy7864 72 LEQAVKFLSPLQLLAKDRI------ETHLMAFEIYFRRQKPLLMLQSVKRAWALDPK 122 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~i------et~llaFEVy~Rk~K~LLaLqaL~~a~~id~~ 122 (201)
.++|+.++.-...+.++.- .++...-.+|+..|.|-.|+..+..+..+.+.
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 25 FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 5778888877777765432 46777788999999999999999999888543
No 183
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=40.46 E-value=1.2e+02 Score=23.84 Aligned_cols=56 Identities=11% Similarity=-0.060 Sum_probs=42.7
Q ss_pred hHHHHHHhHHHHHHHccch------HhHhHHhHhHhhhccchhHHHHHHHHHhhc---CCCCchH
Q psy7864 71 PLEQAVKFLSPLQLLAKDR------IETHLMAFEIYFRRQKPLLMLQSVKRAWAL---DPKNPTL 126 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~------iet~llaFEVy~Rk~K~LLaLqaL~~a~~i---d~~~P~l 126 (201)
-.++|+.++.-.+...++. ..+|..-..+|...|.|-.|+.++.+|..+ .++++.+
T Consensus 130 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~ 194 (293)
T 2qfc_A 130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF 194 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc
Confidence 4678999988887765543 456666778999999999999999998844 5665543
No 184
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=38.48 E-value=57 Score=26.80 Aligned_cols=54 Identities=13% Similarity=0.245 Sum_probs=42.4
Q ss_pred hHHHHHHhHHHHHHH------ccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCc
Q psy7864 71 PLEQAVKFLSPLQLL------AKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNP 124 (201)
Q Consensus 71 PLeeA~KfL~pL~~~------a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P 124 (201)
=.++|+.++.-...+ .+....+|..--.+|.+.|.|-.|+.++.+|..+.+.++
T Consensus 118 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 118 EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 357788888877776 223557788888899999999999999999999866554
No 185
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=38.43 E-value=1.4e+02 Score=24.48 Aligned_cols=51 Identities=6% Similarity=-0.115 Sum_probs=39.6
Q ss_pred HHHHHHhHHHHHH-----HccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCC
Q psy7864 72 LEQAVKFLSPLQL-----LAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPK 122 (201)
Q Consensus 72 LeeA~KfL~pL~~-----~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~ 122 (201)
.++|+.++.-... ..|....++..--.+|++.|++-.|+.++.++..+.+.
T Consensus 238 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 238 DQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 5677777777766 56667777777788888888888888888888888654
No 186
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=37.67 E-value=1.2e+02 Score=26.91 Aligned_cols=68 Identities=7% Similarity=-0.029 Sum_probs=51.1
Q ss_pred HHHHHHhHHHHHH-----Hccc---hHhHhHHhHhHhhhccchhHHHHHHHHHhhc-----CCCCchHHHHHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQL-----LAKD---RIETHLMAFEIYFRRQKPLLMLQSVKRAWAL-----DPKNPTLHTCLIRLALFIE 138 (201)
Q Consensus 72 LeeA~KfL~pL~~-----~a~~---~iet~llaFEVy~Rk~K~LLaLqaL~~a~~i-----d~~~P~lh~~~vrf~~~v~ 138 (201)
.++|..++.-.+. ++|+ -..+..-...||..+|+|--|+.-..++..| .|+||.+-..+-.+.....
T Consensus 314 ~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~ 393 (433)
T 3qww_A 314 PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYM 393 (433)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 4566666655443 3444 4566777899999999999999988888766 7999999998888877664
Q ss_pred h
Q psy7864 139 Q 139 (201)
Q Consensus 139 ~ 139 (201)
.
T Consensus 394 ~ 394 (433)
T 3qww_A 394 G 394 (433)
T ss_dssp H
T ss_pred h
Confidence 4
No 187
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=35.03 E-value=28 Score=20.80 Aligned_cols=14 Identities=50% Similarity=0.584 Sum_probs=9.9
Q ss_pred CHHHHHHhHHHHHH
Q psy7864 3 LPSERKKLLNKQKK 16 (201)
Q Consensus 3 s~~E~KKlr~Kqrk 16 (201)
+|.|+|||+.-.+|
T Consensus 13 tpeelkklkeeakk 26 (36)
T 2ki0_A 13 TPEELKKLKEEAKK 26 (36)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 68899998754443
No 188
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=34.71 E-value=1.1e+02 Score=23.19 Aligned_cols=48 Identities=6% Similarity=-0.047 Sum_probs=32.5
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhh----ccchhHHHHHHHHHhhcCC
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFR----RQKPLLMLQSVKRAWALDP 121 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~R----k~K~LLaLqaL~~a~~id~ 121 (201)
.++|++++.--.+ +++..++..--.+|.. .+.+-.|+..+.+|..+++
T Consensus 69 ~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 120 (212)
T 3rjv_A 69 YPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE 120 (212)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence 5667776666543 4566666666667776 7777777777777777666
No 189
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=33.69 E-value=1.3e+02 Score=21.44 Aligned_cols=49 Identities=8% Similarity=-0.156 Sum_probs=39.4
Q ss_pred hHHHHHHhHHHHHH------HccchHhHhHHhHhHhhhccchhHHHHHHHHHhhc
Q psy7864 71 PLEQAVKFLSPLQL------LAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWAL 119 (201)
Q Consensus 71 PLeeA~KfL~pL~~------~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~i 119 (201)
=.++|+.++.-... ..+....++..--.+|+..|.|-.|+.++.++..+
T Consensus 41 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 95 (203)
T 3gw4_A 41 RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEEREL 95 (203)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35778888877777 34456677777778999999999999999999888
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=31.59 E-value=1.7e+02 Score=26.38 Aligned_cols=53 Identities=15% Similarity=-0.038 Sum_probs=42.9
Q ss_pred cchHhHhHHhHhHhhhccchhHHHHHHHHHhhc-----CCCCchHHHHHHHHHHHHHh
Q psy7864 87 KDRIETHLMAFEIYFRRQKPLLMLQSVKRAWAL-----DPKNPTLHTCLIRLALFIEQ 139 (201)
Q Consensus 87 ~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~i-----d~~~P~lh~~~vrf~~~v~~ 139 (201)
|+-..+..-...||..+|+|--|+.-..++..| .|+||.+...+..+......
T Consensus 348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~ 405 (490)
T 3n71_A 348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWH 405 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 345566778899999999999999888877665 79999999888888776643
No 191
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=29.91 E-value=1.3e+02 Score=25.43 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=38.1
Q ss_pred cchHHHHHHhHHHHHHHcc--chH--h----HhHHhHhHhhhccchhHHHHHHHHHhhc
Q psy7864 69 EEPLEQAVKFLSPLQLLAK--DRI--E----THLMAFEIYFRRQKPLLMLQSVKRAWAL 119 (201)
Q Consensus 69 ~dPLeeA~KfL~pL~~~a~--~~i--e----t~llaFEVy~Rk~K~LLaLqaL~~a~~i 119 (201)
-.|||-|+-+|.-+....+ +.+ + .-..+-=|++.+|+|=.|..-|++...=
T Consensus 85 lTPLESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 85 LTPLESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred CChHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 4599999999999998874 111 1 1225666889999999999988876543
No 192
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=29.72 E-value=2e+02 Score=24.93 Aligned_cols=65 Identities=12% Similarity=-0.027 Sum_probs=53.7
Q ss_pred hHHHHHHhHHHHHHHccchHh--HhHHhHhHhhhc-----cchhHHHHHHHHHhhcCCCC-chHHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIE--THLMAFEIYFRR-----QKPLLMLQSVKRAWALDPKN-PTLHTCLIRLAL 135 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~ie--t~llaFEVy~Rk-----~K~LLaLqaL~~a~~id~~~-P~lh~~~vrf~~ 135 (201)
-+.+|...+.--.++.|+..+ +|..-==+|... |..-.|-+++.+|..|+|++ +..+.-..+|.-
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~ 250 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALC 250 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 367788888888899999655 777655677774 89999999999999999986 999988888763
No 193
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=29.51 E-value=79 Score=27.42 Aligned_cols=89 Identities=16% Similarity=0.094 Sum_probs=59.1
Q ss_pred hHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhCCCCCCChHHHHHHhhhhccCCCCCCH
Q psy7864 89 RIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFIEQMKGAEGDVHPAVWEVLKSGLEPIMGSKPA 168 (201)
Q Consensus 89 ~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~lh~~~vrf~~~v~~~~~~~~~~~~~V~~Vl~~e~~~l~~~~~l 168 (201)
.+.+....++.+++.|.+-.++..+.++..+||-+-.+|.++++.........+.. ..=.....++..++.. -++..+
T Consensus 170 ~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al-~~y~~~r~~L~~eLG~-~P~~~l 247 (388)
T 2ff4_A 170 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDAL-GAYRRVKTTLADDLGI-DPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHHHHHHHSC-CCCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHhCC-CCCHHH
Confidence 34555667789999999999999999999999999999999988765432211100 0012345566666652 345556
Q ss_pred HHHHHHHHHHc
Q psy7864 169 LELNASYLKEN 179 (201)
Q Consensus 169 ~~~N~~fl~~h 179 (201)
..+...-+...
T Consensus 248 ~~l~~~il~~~ 258 (388)
T 2ff4_A 248 RALNERILRQQ 258 (388)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 66666666543
No 194
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=28.55 E-value=1e+02 Score=21.99 Aligned_cols=49 Identities=6% Similarity=-0.071 Sum_probs=37.6
Q ss_pred HHHHHHhHHHHHHH---cc----chHhHhHHhHhHhhhccchhHHHHHHHHHhhcC
Q psy7864 72 LEQAVKFLSPLQLL---AK----DRIETHLMAFEIYFRRQKPLLMLQSVKRAWALD 120 (201)
Q Consensus 72 LeeA~KfL~pL~~~---a~----~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id 120 (201)
.++|+.++.-.... .+ ....++..--.+|++.|.|-.|+.++.++..+.
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 57788877777766 23 234556667789999999999999999988774
No 195
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=27.88 E-value=1.1e+02 Score=25.03 Aligned_cols=49 Identities=10% Similarity=0.054 Sum_probs=32.5
Q ss_pred HHHHHHhHHHHHH-----Hc-cchHhHhHHhHhHhhhccchhHHHHHHHHHhhcC
Q psy7864 72 LEQAVKFLSPLQL-----LA-KDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALD 120 (201)
Q Consensus 72 LeeA~KfL~pL~~-----~a-~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id 120 (201)
.++|+.++.-... .. |....++..--.+|++.|+|-.|+.++.++..+.
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS 294 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4566666665555 23 5566667766777777777777777777776664
No 196
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=25.54 E-value=39 Score=22.13 Aligned_cols=19 Identities=16% Similarity=0.419 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhcCCCCchH
Q psy7864 108 LMLQSVKRAWALDPKNPTL 126 (201)
Q Consensus 108 LaLqaL~~a~~id~~~P~l 126 (201)
.|.|||..|+.++|++..+
T Consensus 32 VAiqCi~~aF~v~~~d~~l 50 (52)
T 4gof_A 32 VAIQCLETAFGVTVEDSDL 50 (52)
T ss_dssp HHHHHHHHHHTCCSSCCTT
T ss_pred HHHHHHHHHcCCCcccccc
Confidence 4689999999999987654
No 197
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=25.03 E-value=2e+02 Score=25.26 Aligned_cols=68 Identities=10% Similarity=0.020 Sum_probs=50.2
Q ss_pred HHHHHHhHHHHHH-----Hccc---hHhHhHHhHhHhhhccchhHHHHHHHHHhhc-----CCCCchHHHHHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQL-----LAKD---RIETHLMAFEIYFRRQKPLLMLQSVKRAWAL-----DPKNPTLHTCLIRLALFIE 138 (201)
Q Consensus 72 LeeA~KfL~pL~~-----~a~~---~iet~llaFEVy~Rk~K~LLaLqaL~~a~~i-----d~~~P~lh~~~vrf~~~v~ 138 (201)
.++|..++.-.+. ++++ -..+..-.+.||..+|+|--|+.-..++..| .|+||.+...+..+.....
T Consensus 303 ~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~ 382 (429)
T 3qwp_A 303 WEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQL 382 (429)
T ss_dssp HHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHH
Confidence 3556665554443 2333 4566778899999999999999888877665 7999999998888877664
Q ss_pred h
Q psy7864 139 Q 139 (201)
Q Consensus 139 ~ 139 (201)
.
T Consensus 383 ~ 383 (429)
T 3qwp_A 383 H 383 (429)
T ss_dssp H
T ss_pred h
Confidence 3
No 198
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=24.94 E-value=1.6e+02 Score=22.13 Aligned_cols=59 Identities=10% Similarity=0.055 Sum_probs=43.9
Q ss_pred hHHHHHHhHHHHHHHccchHhHhHHhHhHhhhcc----chhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q psy7864 71 PLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQ----KPLLMLQSVKRAWALDPKNPTLHTCLIRLA 134 (201)
Q Consensus 71 PLeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~----K~LLaLqaL~~a~~id~~~P~lh~~~vrf~ 134 (201)
=.++|+++++-..+. ++.+++..--.+|.+ + .+-.|++.+.+| +++.+|..+..+-.+.
T Consensus 33 ~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A--~~~g~~~a~~~Lg~~y 95 (212)
T 3rjv_A 33 DYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKA--VEAGSKSGEIVLARVL 95 (212)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH--HHCCCHHHHHHHHHHH
Confidence 467899998887764 577888877778888 6 799999999988 5567776655554443
No 199
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=23.31 E-value=1.6e+02 Score=23.20 Aligned_cols=47 Identities=9% Similarity=0.043 Sum_probs=36.9
Q ss_pred HHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCch
Q psy7864 79 LSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPT 125 (201)
Q Consensus 79 L~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P~ 125 (201)
+.......|+.+..+.-..+.|++.++|-.|+..+..+..+.+.++.
T Consensus 64 ~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~ 110 (293)
T 2qfc_A 64 YEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE 110 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred hccccccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh
Confidence 34444456777888888888999999999999999999888877654
No 200
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=23.27 E-value=66 Score=25.51 Aligned_cols=59 Identities=8% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHH-------HHccchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCC------chHHHHH
Q psy7864 72 LEQAVKFLSPLQ-------LLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKN------PTLHTCL 130 (201)
Q Consensus 72 LeeA~KfL~pL~-------~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~------P~lh~~~ 130 (201)
.++|+.++.-.+ ...+..+.++.---.+|++.|+|-.|+..+..|..+.+.. +.++..+
T Consensus 171 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 242 (293)
T 3u3w_A 171 LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQR 242 (293)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
No 201
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=22.32 E-value=1.2e+02 Score=29.63 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=40.4
Q ss_pred HHHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHHHHHHHH
Q psy7864 72 LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRA 116 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaLqaL~~a 116 (201)
.+-|++.-+---+.+|..+.||..--+||+.-|.|=.||=+|+..
T Consensus 353 ~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 353 YELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 466888888888999999999999999999999999998888876
No 202
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=22.08 E-value=2.7e+02 Score=21.35 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=18.8
Q ss_pred CCHHHHHHhHHHHHH-HHHH-HHHHHHH
Q psy7864 2 LLPSERKKLLNKQKK-AKRK-ELEKANA 27 (201)
Q Consensus 2 ls~~E~KKlr~Kqrk-a~kK-~~e~~~~ 27 (201)
||++=+++|++-.++ |+-- ++|.+++
T Consensus 11 mt~~Rk~~Lk~lll~kA~e~l~kE~e~k 38 (133)
T 1j1d_C 11 ISASRKLQLKTLLLQIAKQELEREAEER 38 (133)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999998865 4444 6666555
No 203
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=21.95 E-value=3e+02 Score=26.02 Aligned_cols=79 Identities=9% Similarity=-0.065 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHccchHhHhHHhHhHhhhccchhHHH-HHHHHHhhcCCCCchHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy7864 73 EQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLML-QSVKRAWALDPKNPTLHTCLIRLALFIEQMKGAEGDVHPAV 151 (201)
Q Consensus 73 eeA~KfL~pL~~~a~~~iet~llaFEVy~Rk~K~LLaL-qaL~~a~~id~~~P~lh~~~vrf~~~v~~~~~~~~~~~~~V 151 (201)
........-.+...|...+.|+.......+.++.--|. ..+.+|....|.++.|+...+.|.... + -.+.+
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~----~----~~e~a 397 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELN----T----KIPEI 397 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----T----CHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----C----CHHHH
Q ss_pred HHHHhhhh
Q psy7864 152 WEVLKSGL 159 (201)
Q Consensus 152 ~~Vl~~e~ 159 (201)
++|.+..+
T Consensus 398 R~iyek~l 405 (679)
T 4e6h_A 398 ETTILSCI 405 (679)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 204
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=20.33 E-value=2e+02 Score=23.04 Aligned_cols=51 Identities=8% Similarity=-0.113 Sum_probs=31.5
Q ss_pred HHHHHHhHHHHHHHc--------cchHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCC
Q psy7864 72 LEQAVKFLSPLQLLA--------KDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPK 122 (201)
Q Consensus 72 LeeA~KfL~pL~~~a--------~~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~ 122 (201)
+++|..++.-..... |....++..--.+|...|.|--|...+.++..+.+.
T Consensus 109 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 109 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 455555555555544 223445554556777777777777777777777654
No 205
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=20.01 E-value=1.7e+02 Score=23.85 Aligned_cols=53 Identities=13% Similarity=0.273 Sum_probs=37.9
Q ss_pred HHHHHHhHHHHHHHcc------chHhHhHHhHhHhhhccchhHHHHHHHHHhhcCCCCc
Q psy7864 72 LEQAVKFLSPLQLLAK------DRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNP 124 (201)
Q Consensus 72 LeeA~KfL~pL~~~a~------~~iet~llaFEVy~Rk~K~LLaLqaL~~a~~id~~~P 124 (201)
.++|+.++.--..+.+ ....+|..--.+|.+.|.|-.|+.++.+|..+.+.++
T Consensus 117 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 175 (378)
T 3q15_A 117 YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP 175 (378)
T ss_dssp HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC
Confidence 4567777766655532 2455666667789999999999999999988865543
Done!