RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7864
(201 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 1e-06
Identities = 35/216 (16%), Positives = 67/216 (31%), Gaps = 46/216 (21%)
Query: 7 RKKLLNKQKKAKRKELEKAN---------------AIAAAQEKREQHNKARQ----QTNN 47
R + K ++A EL A A+ + Q + N
Sbjct: 133 RLQPYLKLRQA-LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 48 QDNDTDTPQQDELIPDKLAKTEEPLEQAVKFLSPLQLL---AKDRIETHLMAFEIYFRRQ 104
++ + + + L + + S ++L + + L+ + Y +
Sbjct: 192 CNSPETVLEMLQKL---LYQIDPNWTSRSDHSSNIKLRIHSIQAELR-RLLKSKPY---E 244
Query: 105 KPLLMLQSVKRAWALDPKNPTLHTC--LI--RLALFIEQMKGAEGDVHPAVWEVLKSGLE 160
LL+L +V+ A A + N +C L+ R + + A H ++ + L
Sbjct: 245 NCLLVLLNVQNAKAWNAFN---LSCKILLTTRFKQVTDFLSAATT-THISL-DHHSMTLT 299
Query: 161 PIMGSKPALELNASYLKENASHLPALLCEV---ALS 193
P L YL LP + LS
Sbjct: 300 P----DEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Score = 36.0 bits (82), Expect = 0.008
Identities = 28/176 (15%), Positives = 45/176 (25%), Gaps = 55/176 (31%)
Query: 6 ERKKLLNKQKKAKRKEL------EKANAIAAAQEKREQHNKARQQTNNQD----NDTDTP 55
+ L+ KQ K + K + + H N +D P
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKL----ENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 56 QQD--------------------ELIPD----------KLAKTEEPLEQAVKFLSPLQLL 85
D L K+ + L+ LQ L
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 86 A--KDRIETHLMAFEIYFRRQKPLL-MLQSVKRAWALDPKNPTLHTCLIRLALFIE 138
K I + +E R +L L ++ +T L+R+AL E
Sbjct: 528 KFYKPYICDNDPKYE---RLVNAILDFLPKIEENLICSK-----YTDLLRIALMAE 575
Score = 34.8 bits (79), Expect = 0.015
Identities = 24/166 (14%), Positives = 43/166 (25%), Gaps = 49/166 (29%)
Query: 2 LLPSERKKLLNKQKKAKRKEL-EKANA--------IAAA------------QEKREQHNK 40
L P E K LL K + ++L + IA + ++
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 41 ARQQTNNQDNDTDTPQQ---------DELIPDKL------AKTEEPLEQAVKFLSPLQLL 85
+ + N + + IP L + + V L L+
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 86 AKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLI 131
K E+ + IY + L LH ++
Sbjct: 418 EKQPKESTISIPSIYLELKVKL-------------ENEYALHRSIV 450
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.001
Identities = 27/180 (15%), Positives = 54/180 (30%), Gaps = 63/180 (35%)
Query: 30 AAQEKREQHNKARQQTNNQDNDTDTPQQDELIPDKLAKTEEPLEQAVKFLSPLQLLAKDR 89
A + +EQ NK + T+ D+ EP +P +L+ K
Sbjct: 29 IASQLQEQFNKILPE------PTEGFAADD----------EPT-------TPAELVGK-- 63
Query: 90 IETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLAL--FIEQ-MKGAEGD 146
F L V + ++P ++ L L F ++G D
Sbjct: 64 -------F------------LGYV--SSLVEPSKVGQFDQVLNLCLTEFENCYLEG--ND 100
Query: 147 VHPAVWEVLKSGLEPIMGSKPALELNASYLK--------ENASHLPALLCEVALSSEVGF 198
+H ++L+ ++ +K ++ +Y+ + AL
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIK---NYITARIMAKRPFDKKSNSALF-RAVGEGNAQL 156
Score = 28.1 bits (62), Expect = 2.8
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 12/53 (22%)
Query: 62 PDKLAKTEEPLEQ-----AVKFL-------SPLQLLAKDRIETHLMAFEIYFR 102
P L ++ P + + +FL S L + A D I L+ + F
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Score = 26.9 bits (59), Expect = 6.0
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 15/50 (30%)
Query: 150 AVWEVLKSGLEPIMGSKPALELNA--SYLKENASHLPALLCEVA--LSSE 195
A +E LKS G PA A S L E A AL +A +S E
Sbjct: 1742 AAFEDLKS-----KGLIPADATFAGHS-LGEYA----ALAS-LADVMSIE 1780
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.010
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 5/23 (21%)
Query: 155 LKSGLE---PIMGSKPALELNAS 174
L++ L+ S PAL + A+
Sbjct: 25 LQASLKLYAD--DSAPALAIKAT 45
Score = 26.5 bits (57), Expect = 5.2
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 16/41 (39%)
Query: 73 EQAVKFL-SPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQS 112
+QA+K L + L+L A D P L +++
Sbjct: 19 KQALKKLQASLKLYADD---------------SAPALAIKA 44
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.041
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 6 ERKKLLNKQKKAKRKELEKANAIAAAQEKREQH-----NKARQQTNNQDNDTDTPQQ--D 58
E++K L ++ A K +E+ A ++ E + + + NN+ D QQ
Sbjct: 93 EQRKRL-QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
Query: 59 ELI 61
++I
Sbjct: 152 DII 154
Score = 31.3 bits (70), Expect = 0.14
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 5 SERKKLLNKQKKAKRKELEKANAIAAAQ-EKREQHNKARQQTNNQDNDTDT 54
+ K + + ++ +K+LE+ N + Q EK + +N+ + Q D D
Sbjct: 103 AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
Score = 26.7 bits (58), Expect = 4.1
Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 11 LNKQKKAKRKELEKANAIAAAQEKREQHNKARQQTNNQDNDTDTPQQDELIPDKLAKTEE 70
+ K ++ +RK L++ +A A+ ++E KA++ + Q ++ + +
Sbjct: 87 IRKWREEQRKRLQELDA-ASKVMEQEWREKAKKDLEEWNQRQSE-QVEKNKINNRIADKA 144
Query: 71 PLEQ 74
+Q
Sbjct: 145 FYQQ 148
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 27.5 bits (61), Expect = 3.5
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 13 KQKKAKRKELEKANAIAAAQEKREQHNKARQQTNNQDNDTDTPQQDELIPDKL 65
K+ + +R+ EK A+EK E+ +QQ Q D + + + D L
Sbjct: 381 KENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGVMDSL 433
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 27.4 bits (62), Expect = 3.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 5 SERKKLLNKQKKAKRK 20
S +KKLL KQK+ K++
Sbjct: 559 SRKKKLLQKQKEGKKR 574
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 27.4 bits (62), Expect = 4.0
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 5 SERKKLLNKQKKAKRK 20
+ +KKLL QK+ K++
Sbjct: 564 TRKKKLLENQKEGKKR 579
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase,
homodimer, rossman fold, 4 domai L-histidine
biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A
{Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A*
1kar_A
Length = 434
Score = 27.1 bits (61), Expect = 4.4
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 11/53 (20%)
Query: 58 DELIPDKLAKTEEPLEQAVKFLSPLQL----LAKDRIETHLMAFEIYFRRQKP 106
D+ L + E + A + LS +A IET + QK
Sbjct: 59 DKTTVTALKVSAEEIAAASERLSDELKQAMAVAVKNIET-------FHTAQKL 104
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 27.0 bits (60), Expect = 4.5
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 8 KKLLNKQKKAKRKELEKANAIAAAQEKREQHNKARQQTNNQDNDTDTPQQDELIPDKLAK 67
K+L N K+ ++ + E E + R++ ++ + E I D
Sbjct: 101 KRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFH---VPERIIDSQRA 157
Query: 68 TEEPLEQAVKFLSPLQLLAKD 88
+ E +++L + L D
Sbjct: 158 SLEDGTSQLQYLVKWRRLNYD 178
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 27.1 bits (60), Expect = 4.8
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 7/81 (8%)
Query: 64 KLAKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKN 123
+ A+ L+QA A + L + + RA L P+
Sbjct: 72 RHAEAAVLLQQASD-------AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124
Query: 124 PTLHTCLIRLALFIEQMKGAE 144
P + L+ + + +
Sbjct: 125 PYITAQLLNWRRRLCDWRALD 145
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex,
oxidoreductase; 2.95A {Helicobacter pylori} SCOP:
c.47.1.10
Length = 198
Score = 26.4 bits (59), Expect = 5.2
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 145 GDVHPAVWEVLKSGLEPIMGSKPALELNASYLKENASHL 183
G+V PA W + G + + K + A YLKEN+ L
Sbjct: 166 GEVCPAGW---RKGDKGM---KATHQGVAEYLKENSIKL 198
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin
dependant, mitochondrial, antioxidant, oxidoreductase,
redox-active center; 1.78A {Plasmodium falciparum}
Length = 221
Score = 26.1 bits (58), Expect = 6.6
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
Query: 145 GDVHPAVWEVLKSGLEPIMGSKPALELNASYLKENASHL 183
G+V P W K G + KP E Y+ ++
Sbjct: 189 GEVCPINW---KKGQKAF---KPTTESLIDYMNNANKNV 221
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET:
DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5
e.8.1.1
Length = 847
Score = 26.4 bits (58), Expect = 7.6
Identities = 6/43 (13%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 2 LLPSERKKLLNKQKKAKRKELEKANAIAAAQEKREQHNKARQQ 44
+ L + + K +K+ + N ++E++ ++ Q+
Sbjct: 527 ITAVITGLLRDFRVKIYKKKAKNPN---NSEEQKLLYDV-VQR 565
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 26.3 bits (58), Expect = 8.2
Identities = 8/55 (14%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 6 ERKKLLNKQKKAKRKELEKANA-IAAAQEKREQHNKARQQTNNQDNDTDTPQQDE 59
++ L K++K + + +A +EK + K + + + ++ + + E
Sbjct: 997 DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKE 1051
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.363
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,812,775
Number of extensions: 156640
Number of successful extensions: 369
Number of sequences better than 10.0: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 48
Length of query: 201
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 112
Effective length of database: 4,216,824
Effective search space: 472284288
Effective search space used: 472284288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.3 bits)