RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7864
         (201 letters)



>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 388

 Score = 30.8 bits (68), Expect = 0.096
 Identities = 14/128 (10%), Positives = 38/128 (29%)

Query: 6   ERKKLLNKQKKAKRKELEKANAIAAAQEKREQHNKARQQTNNQDNDTDTPQQDELIPDKL 65
                  +  + +    +    +A A +++    +A    N       T          +
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314

Query: 66  AKTEEPLEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPT 125
            + +  +E+AV+       +  +    H     +  ++ K    L   K A  + P    
Sbjct: 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

Query: 126 LHTCLIRL 133
            ++ +   
Sbjct: 375 AYSNMGNT 382



 Score = 28.9 bits (63), Expect = 0.43
 Identities = 15/81 (18%), Positives = 29/81 (35%)

Query: 72  LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLI 131
            ++AV        L+ +    H     +Y+ +    L + + +RA  L P  P  +  L 
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278

Query: 132 RLALFIEQMKGAEGDVHPAVW 152
                   +  AE   + A+ 
Sbjct: 279 NALKEKGSVAEAEDCYNTALR 299



 Score = 25.8 bits (55), Expect = 4.8
 Identities = 10/59 (16%), Positives = 19/59 (32%)

Query: 72  LEQAVKFLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCL 130
            E A +    L     D     L+   I+F+ ++          A   +P     ++ L
Sbjct: 15  FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73


>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 514

 Score = 27.4 bits (61), Expect = 1.2
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 78  FLSPLQLLAKDRIETHLMAFEIYFRRQKPLLMLQS 112
           +L PL + A D     +     +      LL+L S
Sbjct: 81  WLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLAS 115


>d1gpma3 d.52.2.1 (A:405-525) GMP synthetase C-terminal dimerisation
           domain {Escherichia coli [TaxId: 562]}
          Length = 121

 Score = 25.9 bits (57), Expect = 2.0
 Identities = 8/71 (11%), Positives = 19/71 (26%), Gaps = 3/71 (4%)

Query: 86  AKDRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFIEQMKGAEG 145
           A       L   ++Y +  +   +   V+    +           +R    I+ M     
Sbjct: 23  ADAIFIEELRKADLYDKVSQAFTVFLPVRSVGVMGDGRKYDWVVSLRAVETIDFMT---A 79

Query: 146 DVHPAVWEVLK 156
                 ++ L 
Sbjct: 80  HWAHLPYDFLG 90


>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus)
           [TaxId: 9913]}
          Length = 169

 Score = 25.4 bits (54), Expect = 4.5
 Identities = 8/52 (15%), Positives = 22/52 (42%)

Query: 93  HLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRLALFIEQMKGAE 144
                + +   ++    L  +K+A  + P++  +   L+++   I+  K  E
Sbjct: 114 LYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 165


>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
          Length = 117

 Score = 24.2 bits (51), Expect = 8.1
 Identities = 5/46 (10%), Positives = 13/46 (28%)

Query: 88  DRIETHLMAFEIYFRRQKPLLMLQSVKRAWALDPKNPTLHTCLIRL 133
           D  + +           +     ++ +     +  NP L   L  +
Sbjct: 69  DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114


>d2nn6d2 d.101.1.1 (D:147-235) Exosome complex exonuclease RRP46
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 89

 Score = 23.4 bits (50), Expect = 9.5
 Identities = 1/19 (5%), Positives = 9/19 (47%)

Query: 7  RKKLLNKQKKAKRKELEKA 25
           + +    +++ ++   K+
Sbjct: 71 SQHVFRFYRESLQRRYSKS 89


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.129    0.363 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 663,594
Number of extensions: 28566
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 14
Length of query: 201
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,295,466
Effective search space: 155455920
Effective search space used: 155455920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.8 bits)