Query psy7866
Match_columns 109
No_of_seqs 114 out of 1055
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 20:50:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7866.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7866hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02347 GDC-P: Glycine cleava 100.0 1.1E-46 2.3E-51 313.4 7.5 108 2-109 41-148 (429)
2 COG0403 GcvP Glycine cleavage 100.0 4.9E-45 1.1E-49 302.9 9.9 107 3-109 52-158 (450)
3 PRK12566 glycine dehydrogenase 100.0 2.2E-43 4.8E-48 313.9 9.6 108 2-109 55-162 (954)
4 TIGR00461 gcvP glycine dehydro 100.0 3.2E-41 7E-46 300.2 10.0 108 2-109 40-147 (939)
5 PRK05367 glycine dehydrogenase 100.0 1.8E-39 3.9E-44 289.5 10.5 108 2-109 52-159 (954)
6 PLN02414 glycine dehydrogenase 100.0 1.4E-34 3E-39 259.1 9.7 108 2-109 76-186 (993)
7 KOG2040|consensus 100.0 1.5E-32 3.2E-37 238.5 7.3 109 1-109 93-201 (1001)
8 TIGR00461 gcvP glycine dehydro 100.0 1.1E-30 2.3E-35 233.1 9.8 102 3-109 457-567 (939)
9 COG1003 GcvP Glycine cleavage 100.0 1.4E-29 3E-34 211.8 8.6 102 3-107 41-145 (496)
10 PRK12566 glycine dehydrogenase 100.0 2.2E-29 4.8E-34 224.6 8.6 99 7-109 478-580 (954)
11 PRK05367 glycine dehydrogenase 100.0 2E-28 4.4E-33 218.8 9.6 102 3-109 469-579 (954)
12 PRK04366 glycine dehydrogenase 99.9 7E-26 1.5E-30 188.3 9.4 100 2-106 44-146 (481)
13 PLN02414 glycine dehydrogenase 99.9 2.6E-23 5.6E-28 186.9 8.5 96 8-107 504-603 (993)
14 PRK00451 glycine dehydrogenase 99.7 1.1E-17 2.3E-22 136.0 9.3 106 2-108 41-149 (447)
15 KOG2040|consensus 99.3 1E-12 2.3E-17 115.5 3.2 94 9-104 519-615 (1001)
16 cd00613 GDC-P Glycine cleavage 98.5 4.7E-07 1E-11 71.8 8.4 96 10-106 1-99 (398)
17 PRK13520 L-tyrosine decarboxyl 96.4 0.011 2.5E-07 46.2 6.4 91 8-105 2-93 (371)
18 cd06257 DnaJ DnaJ domain or J- 71.5 8 0.00017 22.2 3.5 28 2-29 6-33 (55)
19 PTZ00100 DnaJ chaperone protei 69.8 7.3 0.00016 27.7 3.6 28 2-29 71-98 (116)
20 cd01494 AAT_I Aspartate aminot 65.4 8.8 0.00019 25.7 3.2 36 73-108 2-37 (170)
21 smart00271 DnaJ DnaJ molecular 63.0 15 0.00032 21.5 3.5 28 2-29 7-34 (60)
22 PF03656 Pam16: Pam16; InterP 57.7 9.4 0.0002 27.5 2.3 28 2-29 64-91 (127)
23 KOG0721|consensus 53.3 17 0.00036 29.0 3.2 31 2-32 105-135 (230)
24 KOG3517|consensus 50.0 12 0.00026 30.7 1.9 35 5-40 76-116 (334)
25 cd00923 Cyt_c_Oxidase_Va Cytoc 49.3 23 0.0005 25.0 3.1 32 72-109 22-53 (103)
26 PF02284 COX5A: Cytochrome c o 47.7 23 0.00049 25.2 2.8 32 72-109 25-56 (108)
27 PF00226 DnaJ: DnaJ domain; I 47.5 39 0.00085 20.1 3.6 27 2-28 6-32 (64)
28 PRK14169 bifunctional 5,10-met 46.8 56 0.0012 26.4 5.4 72 3-77 66-151 (282)
29 cd05197 GH4_glycoside_hydrolas 45.4 19 0.00041 30.4 2.6 55 29-87 4-59 (425)
30 PHA03102 Small T antigen; Revi 44.4 27 0.00058 25.9 3.0 28 2-29 11-40 (153)
31 PF08855 DUF1825: Domain of un 43.9 28 0.00061 24.6 2.9 26 61-86 5-30 (108)
32 KOG4539|consensus 43.9 31 0.00066 27.9 3.4 68 4-74 123-197 (274)
33 KOG4077|consensus 42.5 28 0.00061 25.9 2.8 32 72-109 64-95 (149)
34 PRK14176 bifunctional 5,10-met 41.3 57 0.0012 26.5 4.6 72 3-77 74-159 (287)
35 PF00076 RRM_1: RNA recognitio 40.8 19 0.00042 20.8 1.5 18 3-20 5-22 (70)
36 cd03527 RuBisCO_small Ribulose 40.7 65 0.0014 22.3 4.3 21 4-25 9-29 (99)
37 PRK14185 bifunctional 5,10-met 38.7 70 0.0015 26.1 4.8 72 3-77 67-152 (293)
38 cd05298 GH4_GlvA_pagL_like Gly 38.6 27 0.00058 29.7 2.5 55 29-87 4-59 (437)
39 PF05678 VQ: VQ motif; InterP 38.1 35 0.00075 18.9 2.1 17 75-91 14-30 (31)
40 PF02782 FGGY_C: FGGY family o 35.0 41 0.00088 24.0 2.7 30 76-106 165-194 (198)
41 PRK14189 bifunctional 5,10-met 35.0 73 0.0016 25.8 4.4 72 3-77 68-153 (285)
42 cd00952 CHBPH_aldolase Trans-o 34.7 63 0.0014 25.8 3.9 46 8-54 117-165 (309)
43 cd00259 STNV STNV domain; sate 33.5 23 0.0005 27.3 1.2 60 39-103 98-165 (195)
44 PRK14183 bifunctional 5,10-met 33.2 1E+02 0.0022 25.0 4.9 72 3-77 67-152 (281)
45 PRK14188 bifunctional 5,10-met 33.1 99 0.0021 25.1 4.8 80 3-88 68-161 (296)
46 TIGR02539 SepCysS Sep-tRNA:Cys 32.8 49 0.0011 26.4 3.0 41 66-108 46-86 (370)
47 COG2122 Uncharacterized conser 32.3 36 0.00079 27.4 2.1 21 45-65 49-69 (256)
48 PRK14184 bifunctional 5,10-met 32.0 1E+02 0.0022 25.0 4.7 72 3-77 67-152 (286)
49 COG1486 CelF Alpha-galactosida 32.0 61 0.0013 28.1 3.6 57 29-88 7-63 (442)
50 PRK14191 bifunctional 5,10-met 31.7 88 0.0019 25.4 4.3 72 3-77 67-152 (285)
51 PRK14179 bifunctional 5,10-met 31.1 1.3E+02 0.0028 24.4 5.2 80 3-88 68-161 (284)
52 cd00954 NAL N-Acetylneuraminic 31.0 85 0.0018 24.5 4.1 46 8-54 110-158 (288)
53 cd00408 DHDPS-like Dihydrodipi 30.9 82 0.0018 24.2 3.9 46 8-54 106-153 (281)
54 TIGR02349 DnaJ_bact chaperone 30.8 65 0.0014 26.1 3.5 29 1-29 5-33 (354)
55 PLN02417 dihydrodipicolinate s 29.0 65 0.0014 25.2 3.1 47 8-58 110-158 (280)
56 PRK14190 bifunctional 5,10-met 28.8 1.1E+02 0.0024 24.8 4.4 72 3-77 68-153 (284)
57 PRK14277 chaperone protein Dna 28.7 74 0.0016 26.3 3.5 28 2-29 11-38 (386)
58 PRK14281 chaperone protein Dna 28.2 77 0.0017 26.4 3.5 28 2-29 9-36 (397)
59 PRK10266 curved DNA-binding pr 27.4 84 0.0018 25.1 3.5 28 2-29 10-37 (306)
60 cd00590 RRM RRM (RNA recogniti 27.2 69 0.0015 17.8 2.3 18 3-20 6-23 (74)
61 smart00360 RRM RNA recognition 27.1 68 0.0015 17.6 2.2 18 3-20 3-20 (71)
62 PRK14175 bifunctional 5,10-met 26.7 1.3E+02 0.0029 24.3 4.6 71 3-77 68-153 (286)
63 PRK14167 bifunctional 5,10-met 26.7 1.5E+02 0.0033 24.1 4.9 72 3-77 67-152 (297)
64 PRK09430 djlA Dna-J like membr 26.3 88 0.0019 24.7 3.4 27 2-28 206-232 (267)
65 PRK10721 hypothetical protein; 26.0 1E+02 0.0022 20.1 3.0 30 75-107 31-60 (66)
66 PRK14173 bifunctional 5,10-met 25.9 1.5E+02 0.0033 24.0 4.8 72 3-77 65-150 (287)
67 KOG0720|consensus 25.9 60 0.0013 28.5 2.5 31 2-32 241-271 (490)
68 TIGR00683 nanA N-acetylneurami 25.9 1.1E+02 0.0024 24.1 4.0 46 8-54 110-158 (290)
69 PRK14296 chaperone protein Dna 25.9 87 0.0019 25.9 3.4 28 2-29 10-37 (372)
70 PRK14193 bifunctional 5,10-met 25.1 1.7E+02 0.0037 23.7 4.9 72 3-77 68-153 (284)
71 PRK14278 chaperone protein Dna 24.9 95 0.0021 25.7 3.5 28 2-29 9-36 (378)
72 PRK14194 bifunctional 5,10-met 24.9 1.9E+02 0.004 23.7 5.1 79 3-88 69-162 (301)
73 PF10550 Toxin_36: Conantokin- 24.6 64 0.0014 15.2 1.4 9 75-83 4-12 (15)
74 TIGR00674 dapA dihydrodipicoli 24.4 99 0.0021 24.1 3.4 46 8-54 107-154 (285)
75 PRK03170 dihydrodipicolinate s 24.3 1.3E+02 0.0028 23.4 4.0 46 8-54 110-157 (292)
76 PRK14171 bifunctional 5,10-met 23.8 1.8E+02 0.0039 23.6 4.8 23 3-25 68-90 (288)
77 TIGR03531 selenium_SpcS O-phos 23.8 4.6E+02 0.01 22.4 7.7 92 3-99 29-134 (444)
78 PRK10767 chaperone protein Dna 23.7 1.1E+02 0.0023 25.1 3.5 28 2-29 10-37 (371)
79 PRK14168 bifunctional 5,10-met 23.1 2.1E+02 0.0045 23.4 5.1 22 3-24 69-90 (297)
80 PRK14170 bifunctional 5,10-met 23.0 2.2E+02 0.0047 23.1 5.1 71 3-77 67-152 (284)
81 TIGR03412 iscX_yfhJ FeS assemb 22.8 1.3E+02 0.0028 19.4 3.1 9 46-54 31-39 (63)
82 smart00362 RRM_2 RNA recogniti 22.7 94 0.002 17.1 2.3 18 3-20 6-23 (72)
83 PRK14285 chaperone protein Dna 22.5 1.2E+02 0.0025 25.0 3.6 28 2-29 9-36 (365)
84 PTZ00037 DnaJ_C chaperone prot 22.3 1.2E+02 0.0025 25.8 3.6 28 2-29 34-61 (421)
85 PF04298 Zn_peptidase_2: Putat 22.2 70 0.0015 25.2 2.1 32 7-42 36-71 (222)
86 PRK14177 bifunctional 5,10-met 22.2 2.4E+02 0.0052 22.9 5.2 72 3-77 69-154 (284)
87 PRK14166 bifunctional 5,10-met 21.6 2E+02 0.0043 23.3 4.6 71 3-77 66-152 (282)
88 COG3017 LolB Outer membrane li 21.4 57 0.0012 25.6 1.4 21 60-90 111-131 (206)
89 PRK14297 chaperone protein Dna 21.4 1.2E+02 0.0025 25.1 3.4 28 2-29 10-37 (380)
90 cd00950 DHDPS Dihydrodipicolin 21.0 1.3E+02 0.0028 23.2 3.4 46 8-54 109-156 (284)
91 PRK14186 bifunctional 5,10-met 20.9 2.5E+02 0.0054 22.9 5.1 72 3-77 68-153 (297)
92 PRK10792 bifunctional 5,10-met 20.7 2.3E+02 0.005 22.9 4.9 22 3-24 69-90 (285)
93 KOG3442|consensus 20.5 1.4E+02 0.0031 21.8 3.3 27 2-28 65-91 (132)
94 KOG3379|consensus 20.3 1.3E+02 0.0028 22.5 3.0 38 62-99 55-92 (150)
95 PF02056 Glyco_hydro_4: Family 20.3 1.2E+02 0.0025 23.0 2.9 57 29-88 3-59 (183)
96 PRK14288 chaperone protein Dna 20.3 1.4E+02 0.003 24.6 3.6 28 2-29 9-36 (369)
97 KOG3242|consensus 20.2 2.3E+02 0.005 22.2 4.5 37 8-44 100-144 (208)
98 PRK14292 chaperone protein Dna 20.0 1.4E+02 0.0031 24.4 3.6 28 2-29 8-35 (371)
No 1
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=100.00 E-value=1.1e-46 Score=313.40 Aligned_cols=108 Identities=51% Similarity=0.795 Sum_probs=84.2
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCCcccCCCCCcccchhhhHHHhcCCCccccCCCCCchhhhhHHHHHHHHHHHHH
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTPYQPEIAQGRLESLLNFQTMVS 81 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhPyQpe~sQG~Lq~l~e~q~~l~ 81 (109)
++||+++||.|++||+++||+||+.+++|+|+|+|+||+|++|.++|++||||+|+|||||||+|||+||+|||||+|||
T Consensus 41 ~~lp~~~sE~e~~r~~~~la~kN~~~~~fiG~G~y~~~~P~~i~~~i~~~~ef~TaYtPYQpEisQG~Lq~lfe~Qs~i~ 120 (429)
T PF02347_consen 41 LNLPEPLSEYELLRHLERLASKNKSYTSFIGAGSYTHYVPAVIDRNILSRPEFYTAYTPYQPEISQGRLQALFEYQSMIC 120 (429)
T ss_dssp --------HHHHHHHHHHHHTTS--TTS---CTTT-----HHHHH-HHCCHHCCCS-STTSGGGBHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCccccccccCceeChhhcCccccChhhhccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999854449999999999999999999999999999999999
Q ss_pred HhhCCCccCCCCCChhhHHHHHHHhhcC
Q psy7866 82 DLTGLSVANASLLDEATAAAEAMSICHR 109 (109)
Q Consensus 82 eltGmd~~n~S~ydga~A~~ea~~ma~r 109 (109)
||||||++|+|+||||||++||++||.|
T Consensus 121 eLTGmdvaNaSlyd~atA~aEa~~ma~r 148 (429)
T PF02347_consen 121 ELTGMDVANASLYDGATAAAEAMLMAVR 148 (429)
T ss_dssp HHHTSSEE-SEBSSCCHHHHHHHHHHHH
T ss_pred HhhCCCccCCCCCChhHHHHHHHHHHHH
Confidence 9999999999999999999999999875
No 2
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-45 Score=302.89 Aligned_cols=107 Identities=60% Similarity=0.931 Sum_probs=104.2
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCCCCcccCCCCCcccchhhhHHHhcCCCccccCCCCCchhhhhHHHHHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIWRSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTPYQPEIAQGRLESLLNFQTMVSD 82 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhPyQpe~sQG~Lq~l~e~q~~l~e 82 (109)
.+|+++||.|++++++++++||....+|+|.|.|.||+|.||.++|.+||||||+|||||||+|||+||+|||||+|+||
T Consensus 52 ~~~~~~sE~e~l~~l~~ia~kN~~~~sfiG~GyY~~~~P~vI~rnile~pewyTaYTPYQpEISQGrLqaLfefQtlv~d 131 (450)
T COG0403 52 PLPKPLSEYEALAELKEIASKNKVFTSFIGAGYYDTYTPPVILRNILENPEWYTAYTPYQPEISQGRLEALFEFQTLVAD 131 (450)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCchhhhhccCcccCCcCcHHHHHHhhcCccccccCCCCchhhhhHHHHHHHHHHHHHHH
Confidence 57888999999999999999999899999999999999999877999999999999999999999999999999999999
Q ss_pred hhCCCccCCCCCChhhHHHHHHHhhcC
Q psy7866 83 LTGLSVANASLLDEATAAAEAMSICHR 109 (109)
Q Consensus 83 ltGmd~~n~S~ydga~A~~ea~~ma~r 109 (109)
|||||++|+|||||+||++||++||.|
T Consensus 132 LTGm~VANASm~DeaTAaAEAm~ma~r 158 (450)
T COG0403 132 LTGLDVANASMLDEATAAAEAMLMAKR 158 (450)
T ss_pred HhCCCcccchhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999987
No 3
>PRK12566 glycine dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-43 Score=313.89 Aligned_cols=108 Identities=61% Similarity=0.992 Sum_probs=105.3
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCCcccCCCCCcccchhhhHHHhcCCCccccCCCCCchhhhhHHHHHHHHHHHHH
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTPYQPEIAQGRLESLLNFQTMVS 81 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhPyQpe~sQG~Lq~l~e~q~~l~ 81 (109)
|+||+++||.|+.+|+++|++||....+|+|+|+|+||+|.||+++|++||||||+|||||||+|||+||+|||||+|||
T Consensus 55 l~lp~~~sE~e~~~~~~~~a~kN~~~~~fiG~G~y~~~~P~vi~~~i~~~~~~yTaYTPYQpEisQG~Lqal~e~Qtmi~ 134 (954)
T PRK12566 55 LDLPAALDEQAALARLRGYAEQNQVWTSLIGMGYHGTVTPTVILRNVLENPGWYTAYTPYQPEIAQGRLEALLNFQQMTI 134 (954)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCccccccccccCCcCcHHHHHHHHhCchhhhcCCCCCchhhhHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999877999999999999999999999999999999999999
Q ss_pred HhhCCCccCCCCCChhhHHHHHHHhhcC
Q psy7866 82 DLTGLSVANASLLDEATAAAEAMSICHR 109 (109)
Q Consensus 82 eltGmd~~n~S~ydga~A~~ea~~ma~r 109 (109)
||||||++|+||||||||++||++||.|
T Consensus 135 ~LtGm~vaNASl~D~atA~aEA~~ma~~ 162 (954)
T PRK12566 135 DLTGLDLANASLLDEATAAAEAMALAKR 162 (954)
T ss_pred HHhCchhhhhhhccchhHHHHHHHHHHH
Confidence 9999999999999999999999999875
No 4
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=100.00 E-value=3.2e-41 Score=300.16 Aligned_cols=108 Identities=63% Similarity=0.968 Sum_probs=104.3
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCCcccCCCCCcccchhhhHHHhcCCCccccCCCCCchhhhhHHHHHHHHHHHHH
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTPYQPEIAQGRLESLLNFQTMVS 81 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhPyQpe~sQG~Lq~l~e~q~~l~ 81 (109)
++||+++||.|++||+++||+||+...+|+|.|+|+||+|.+|+++|++||||||+|||||||+|||+||+|||||+|||
T Consensus 40 l~lp~~~sE~e~~~~~~~la~~N~~~~~fig~G~y~~~~p~~i~r~v~~~p~~~TaytPyQ~EisQG~Le~l~e~Qt~i~ 119 (939)
T TIGR00461 40 LQLEAPSKEYEALAHLKKIASKNHKFKSYIGMGYYGTILPPVIQRNLLENPGWYTAYTPYQPEISQGRLEALLNFQTVVS 119 (939)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCccccCCCCcCCCcCChHHHHHHHhCchhhhcCCCCChhhhhHHHHHHHHHHHHHH
Confidence 67999889999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred HhhCCCccCCCCCChhhHHHHHHHhhcC
Q psy7866 82 DLTGLSVANASLLDEATAAAEAMSICHR 109 (109)
Q Consensus 82 eltGmd~~n~S~ydga~A~~ea~~ma~r 109 (109)
||||||++|+||||+|||++||++||.|
T Consensus 120 eLtGm~~aNaSl~d~atA~aEa~~~a~~ 147 (939)
T TIGR00461 120 DLTGLPVANASLLDEGTAAAEAMALSFN 147 (939)
T ss_pred HHHCCChhhhhccchhhHHHHHHHHHHH
Confidence 9999999999999999999999999864
No 5
>PRK05367 glycine dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-39 Score=289.48 Aligned_cols=108 Identities=64% Similarity=0.987 Sum_probs=104.9
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCCcccCCCCCcccchhhhHHHhcCCCccccCCCCCchhhhhHHHHHHHHHHHHH
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTPYQPEIAQGRLESLLNFQTMVS 81 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhPyQpe~sQG~Lq~l~e~q~~l~ 81 (109)
++||+++||.|++||+++||+||++.++|+|.|+|++|+|+||+++|++||+|||+|||||||+|||+||+|||||+|++
T Consensus 52 l~lp~~~sE~e~~~~~~~la~~N~~~~~~ig~G~y~~~~P~vi~~~i~~~~~~~t~ytPyQ~EisQG~Leal~~~Qt~la 131 (954)
T PRK05367 52 LDLPAALSEAEALAELRAIASKNKVFRSYIGQGYYGTHTPPVILRNILENPAWYTAYTPYQPEISQGRLEALLNFQTMVA 131 (954)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCcccCCCCCCCcCcHHHHHHHHhCcchhhccCCCChHHHHHHHHHHHHHHHHHH
Confidence 67998899999999999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred HhhCCCccCCCCCChhhHHHHHHHhhcC
Q psy7866 82 DLTGLSVANASLLDEATAAAEAMSICHR 109 (109)
Q Consensus 82 eltGmd~~n~S~ydga~A~~ea~~ma~r 109 (109)
+|||||++|+|++|++||.+||++|+.|
T Consensus 132 ~LtG~~~anaSl~d~aTAa~ea~~~a~~ 159 (954)
T PRK05367 132 DLTGLEIANASLLDEATAAAEAMALAKR 159 (954)
T ss_pred HHHCCChhhccccccHHHHHHHHHHhhh
Confidence 9999999999999999999999999864
No 6
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=100.00 E-value=1.4e-34 Score=259.08 Aligned_cols=108 Identities=63% Similarity=1.026 Sum_probs=104.4
Q ss_pred CCCC---cCCCHHHHHHHHHHHHhhccCCCCcccCCCCCcccchhhhHHHhcCCCccccCCCCCchhhhhHHHHHHHHHH
Q psy7866 2 TNFD---MYLGEHELLEEIQSIANKNEIWRSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTPYQPEIAQGRLESLLNFQT 78 (109)
Q Consensus 2 l~LP---e~lsE~ev~rh~~~ls~~N~~~~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhPyQpe~sQG~Lq~l~e~q~ 78 (109)
++|| +++||.|++||+++||.+|+...+|+|.|+|+||.|.+|+++++++|+|+|+|||||||+|||+||+|||||+
T Consensus 76 l~lp~~~~~~sE~e~~~~~~~la~kN~~~~~fiG~G~y~~~~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt 155 (993)
T PLN02414 76 MKLSKYDEGLTESQMLEHMKSLASKNKVFKSYIGMGYYNTHVPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQT 155 (993)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCccccccCCCCCCccCCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHH
Confidence 6799 7899999999999999999999999999999999999877999999999999999999999999999999999
Q ss_pred HHHHhhCCCccCCCCCChhhHHHHHHHhhcC
Q psy7866 79 MVSDLTGLSVANASLLDEATAAAEAMSICHR 109 (109)
Q Consensus 79 ~l~eltGmd~~n~S~ydga~A~~ea~~ma~r 109 (109)
+||+|||||++|+|+||++||.+||++|+.|
T Consensus 156 ~ia~LtG~~~anaSL~d~aTAaaea~~~a~~ 186 (993)
T PLN02414 156 MITDLTGLPMSNASLLDEGTAAAEAMAMCNN 186 (993)
T ss_pred HHHHHhCCChhhEeecCChHHHHHHHHHHHh
Confidence 9999999999999999999999999999864
No 7
>KOG2040|consensus
Probab=99.97 E-value=1.5e-32 Score=238.46 Aligned_cols=109 Identities=65% Similarity=1.063 Sum_probs=106.0
Q ss_pred CCCCCcCCCHHHHHHHHHHHHhhccCCCCcccCCCCCcccchhhhHHHhcCCCccccCCCCCchhhhhHHHHHHHHHHHH
Q psy7866 1 MTNFDMYLGEHELLEEIQSIANKNEIWRSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTPYQPEIAQGRLESLLNFQTMV 80 (109)
Q Consensus 1 ~l~LPe~lsE~ev~rh~~~ls~~N~~~~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhPyQpe~sQG~Lq~l~e~q~~l 80 (109)
++.+|++++|.|+++|+..+|.||....+|+|.|+|+..+|.+|.++|.++|+|+|.|||||||+|||+||.|.+||+|+
T Consensus 93 ~l~~~~~~~E~eml~~l~~ia~kNk~~ksfIGmGYyn~~vP~~I~RNilenp~W~TqYTPYQ~EIsQGRLEsllNyQTmi 172 (1001)
T KOG2040|consen 93 PLKMDKPLCESEMLQHLEDIASKNKIWKSFIGMGYYNTHVPAVILRNILENPGWYTQYTPYQAEISQGRLESLLNYQTMI 172 (1001)
T ss_pred hhcCCCCcCHHHHHHHHHHHHhhhhHHHHhhccccccccCcHHHHHHhhhCCcceeccCCCchhhhhhhHHHHhhhHHhh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCccCCCCCChhhHHHHHHHhhcC
Q psy7866 81 SDLTGLSVANASLLDEATAAAEAMSICHR 109 (109)
Q Consensus 81 ~eltGmd~~n~S~ydga~A~~ea~~ma~r 109 (109)
++|||+|++|+|+.|.+||++||+.|+.|
T Consensus 173 ~dlTGL~~aNASLLDEgTAaaEAm~l~~~ 201 (1001)
T KOG2040|consen 173 TDLTGLPMANASLLDEGTAAAEAMALCNR 201 (1001)
T ss_pred hhccCCcccchhhhccchhHHHHHHHHHh
Confidence 99999999999999999999999999875
No 8
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=99.97 E-value=1.1e-30 Score=233.06 Aligned_cols=102 Identities=21% Similarity=0.274 Sum_probs=90.6
Q ss_pred CCCcCC-----CHHHHHHHHHHHHhhccC-CCCcccCCCCCcccchhhhHHH-hcCCCccccCCCCCch-hhhhHHHHHH
Q psy7866 3 NFDMYL-----GEHELLEEIQSIANKNEI-WRSYIGLGYHNCLVPTVIQRNL-FENPGWVTQYTPYQPE-IAQGRLESLL 74 (109)
Q Consensus 3 ~LPe~l-----sE~ev~rh~~~ls~~N~~-~~~f~g~G~~~ky~P~vi~~~i-a~~~~f~t~yhPyQpe-~sQG~Lq~l~ 74 (109)
.+|+ + ||.|++|||++|++||++ +.+|+|+|+|+||.|.. .+.+ +++|||+| ||||||| .+||.||++|
T Consensus 457 ~~~~-~f~~~~sE~e~~r~~~~L~~kn~~~~~~fi~lGsctmk~na~-v~~l~~s~~ef~t-~hPyqPe~~sqG~lq~i~ 533 (939)
T TIGR00461 457 LRNE-VFNMYHSETEMLRYLHRLESKDLALNNSMIPLGSCTMKLNAT-AEMMPITWPEFSN-IHPFQPSNQVEGYQELIA 533 (939)
T ss_pred cCCc-ccccCCCHHHHHHHHHHHHhcCCCccccCCCCccCCCccCHH-HHHHHhcchhhcC-cCCCCchHHhHHHHHHHH
Confidence 4676 8 999999999999999997 78999999875444443 3566 99999988 9999999 8999999999
Q ss_pred HHHHHHHHhhCCCccCCCCCChhhHHHHH-HHhhcC
Q psy7866 75 NFQTMVSDLTGLSVANASLLDEATAAAEA-MSICHR 109 (109)
Q Consensus 75 e~q~~l~eltGmd~~n~S~ydga~A~~ea-~~ma~r 109 (109)
|||+||||||||| |+|+||+|+|.+|+ .+|+.|
T Consensus 534 elq~~l~eltGmd--~~Sl~p~aGA~gE~agL~aiR 567 (939)
T TIGR00461 534 QLEKWLCSITGFD--AISLQPNSGAQGEYAGLRVIR 567 (939)
T ss_pred HHHHHHHHHHCCC--CcccCCchHHHHHHHHHHHHH
Confidence 9999999999999 79999999999997 777765
No 9
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=99.96 E-value=1.4e-29 Score=211.79 Aligned_cols=102 Identities=22% Similarity=0.301 Sum_probs=92.5
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccC-CCCcccCCC-CCcccchhhhHHHhcCCCccccCCCCCch-hhhhHHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEI-WRSYIGLGY-HNCLVPTVIQRNLFENPGWVTQYTPYQPE-IAQGRLESLLNFQTM 79 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~-~~~f~g~G~-~~ky~P~vi~~~ia~~~~f~t~yhPyQpe-~sQG~Lq~l~e~q~~ 79 (109)
.+|| +||.|++|||++||+||++ |.++||+|| +|||||++ ++..+..||| ...|||||| .+||.|++|||+|+|
T Consensus 41 ~~Pe-~SE~e~~Rh~~rLs~kn~avd~~m~PLGSCTMK~Np~~-e~~~~~~p~f-~~iHP~~pe~~vqG~l~li~~Lq~~ 117 (496)
T COG1003 41 PLPE-HSETEMVRHYTRLSQKDLAVDRGMIPLGSCTMKLNPKA-EMKPATWPEF-ANIHPFQPEEQVQGYLELIYELQEW 117 (496)
T ss_pred CCcc-ccHHHHHHHHHHHHhcccccccCccCCcccccccCchh-hcccccccch-hhcCCCCChHHHHHHHHHHHHHHHH
Confidence 4588 9999999999999999997 899999995 79999996 9999999999 679999999 599999999999999
Q ss_pred HHHhhCCCccCCCCCChhhHHHHHHHhh
Q psy7866 80 VSDLTGLSVANASLLDEATAAAEAMSIC 107 (109)
Q Consensus 80 l~eltGmd~~n~S~ydga~A~~ea~~ma 107 (109)
|++|||||.++.++-.||++...++++.
T Consensus 118 L~~ITG~DavsLQP~AGAqGE~aGll~I 145 (496)
T COG1003 118 LKEITGMDAVSLQPNAGAQGEYAGLLAI 145 (496)
T ss_pred HHHhcCCceeeccCCCCcchhhHHHHHH
Confidence 9999999997777777777777777663
No 10
>PRK12566 glycine dehydrogenase; Provisional
Probab=99.96 E-value=2.2e-29 Score=224.64 Aligned_cols=99 Identities=23% Similarity=0.298 Sum_probs=92.7
Q ss_pred CCCHHHHHHHHHHHHhhccC-CCCcccCC-CCCcccchhhhHHHhcCCCccccCCCCCc-hhhhhHHHHHHHHHHHHHHh
Q psy7866 7 YLGEHELLEEIQSIANKNEI-WRSYIGLG-YHNCLVPTVIQRNLFENPGWVTQYTPYQP-EIAQGRLESLLNFQTMVSDL 83 (109)
Q Consensus 7 ~lsE~ev~rh~~~ls~~N~~-~~~f~g~G-~~~ky~P~vi~~~ia~~~~f~t~yhPyQp-e~sQG~Lq~l~e~q~~l~el 83 (109)
.+||.|++|||++|++||++ +.+++++| |+|||||.. ....++||||+|. ||||| |.+||.||++||||+|||||
T Consensus 478 ~~SE~el~r~~~~La~kn~~~~~~~~~LGsCTmK~n~~~-~~~p~s~~eF~t~-hPyqp~e~sQG~lq~i~elq~~l~eL 555 (954)
T PRK12566 478 HHSETEMLRYLKQLENKDLALNQSMIPLGSCTMKLNATS-EMIPITWPEFAQL-HPFAPREQAEGYRAMIDELEAWLCAI 555 (954)
T ss_pred CCCHHHHHHHHHHHHhcCcCcccCcccCcccccCcCcHH-hhhcccchhhhcC-CCCCchhhhcCHHHHHHHHHHHHHHH
Confidence 47999999999999999998 77899999 589999996 8889999999986 99999 68999999999999999999
Q ss_pred hCCCccCCCCCChhhHHHH-HHHhhcC
Q psy7866 84 TGLSVANASLLDEATAAAE-AMSICHR 109 (109)
Q Consensus 84 tGmd~~n~S~ydga~A~~e-a~~ma~r 109 (109)
||||++ |+||+|+|.+| |.+|+.|
T Consensus 556 tGmd~~--Sl~p~sGA~gE~A~Lmair 580 (954)
T PRK12566 556 TGFDAI--CMQPNSGAQGEYAGLLAIR 580 (954)
T ss_pred HCCCeE--eecCCchHHHHHHHHHHHH
Confidence 999996 99999999999 9999865
No 11
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.95 E-value=2e-28 Score=218.83 Aligned_cols=102 Identities=25% Similarity=0.309 Sum_probs=92.9
Q ss_pred CCCcCC-----CHHHHHHHHHHHHhhccC-CCCcccCC-CCCcccchhhhHHHhcCCCccccCCCCCc-hhhhhHHHHHH
Q psy7866 3 NFDMYL-----GEHELLEEIQSIANKNEI-WRSYIGLG-YHNCLVPTVIQRNLFENPGWVTQYTPYQP-EIAQGRLESLL 74 (109)
Q Consensus 3 ~LPe~l-----sE~ev~rh~~~ls~~N~~-~~~f~g~G-~~~ky~P~vi~~~ia~~~~f~t~yhPyQp-e~sQG~Lq~l~ 74 (109)
.+|+ + ||.|++||+++|++||++ +.+++|+| |||||||++ ++.++++|||++ |||||| |.+||.||+++
T Consensus 469 ~~~~-~f~~~~sE~e~~r~~~~l~~kn~~~~~~~i~lGsct~~~~p~~-~~~~~~~~~f~~-~hP~qp~e~~qG~l~~i~ 545 (954)
T PRK05367 469 LTHP-VFNRYHSETEMMRYLRRLEDKDLALDRSMIPLGSCTMKLNAAA-EMIPITWPEFAN-LHPFAPAEQAAGYRELID 545 (954)
T ss_pred cCCc-ccCCCCCHHHHHHHHHHHHhcCcCcccceeeCCcCCCcCCHHH-HHHHHhCccccc-cCCCChHHHHHHHHHHHH
Confidence 3566 6 999999999999999998 88999999 589999996 899999999955 999999 79999999999
Q ss_pred HHHHHHHHhhCCCccCCCCCChhhHHHH-HHHhhcC
Q psy7866 75 NFQTMVSDLTGLSVANASLLDEATAAAE-AMSICHR 109 (109)
Q Consensus 75 e~q~~l~eltGmd~~n~S~ydga~A~~e-a~~ma~r 109 (109)
|+|+||||||||| |+|++|+++|.+| +.+|+.|
T Consensus 546 e~q~~l~eltG~d--~~sl~~~~ga~ge~agL~a~r 579 (954)
T PRK05367 546 QLEAWLAEITGYD--AVSLQPNAGAQGEYAGLLAIR 579 (954)
T ss_pred HHHHHHHHHHCCC--CEEECccHHHHHHHHHHHHHH
Confidence 9999999999999 6999999999999 6666654
No 12
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=99.93 E-value=7e-26 Score=188.33 Aligned_cols=100 Identities=24% Similarity=0.399 Sum_probs=94.0
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccC-CCCcccCC-CCCcccchhhhHHHhcCCCccccCCCCCch-hhhhHHHHHHHHHH
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEI-WRSYIGLG-YHNCLVPTVIQRNLFENPGWVTQYTPYQPE-IAQGRLESLLNFQT 78 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~-~~~f~g~G-~~~ky~P~vi~~~ia~~~~f~t~yhPyQpe-~sQG~Lq~l~e~q~ 78 (109)
++||+ +||.|++||+++|+++|.+ +.+|+|.| +++||+|.| ++.++++|+| ++||||||| .+||++|+++++|+
T Consensus 44 ~~~~~-~se~~~~~~~~~l~~~n~~~~~~~~g~G~~~~~~~p~i-~~~~~~~~~~-~~~tpYq~e~~sqG~lel~~~~~~ 120 (481)
T PRK04366 44 PELPE-VSELEVVRHYTRLSQKNYGVDTGFYPLGSCTMKYNPKI-NEKVARLPGF-AELHPLQPEETVQGALELMYELQE 120 (481)
T ss_pred CCCCC-CCHHHHHHHHHHHHhcCCCCCcceecCcccCCCCCHHH-HHHHHhCcch-hcCCCCCChhhhhHHHHHHHHHHH
Confidence 57999 9999999999999999998 78999999 789999996 8999999999 699999999 89999999999999
Q ss_pred HHHHhhCCCccCCCCCChhhHHHHHHHh
Q psy7866 79 MVSDLTGLSVANASLLDEATAAAEAMSI 106 (109)
Q Consensus 79 ~l~eltGmd~~n~S~ydga~A~~ea~~m 106 (109)
++++++||| |++++++++|.++++.|
T Consensus 121 ~la~l~G~~--~~~l~~~~GA~a~~~~l 146 (481)
T PRK04366 121 WLKEITGMD--AVTLQPAAGAHGELTGL 146 (481)
T ss_pred HHHHHhCCC--ceEEEeCcHHHHHHHHH
Confidence 999999999 79999999999887755
No 13
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.89 E-value=2.6e-23 Score=186.89 Aligned_cols=96 Identities=30% Similarity=0.365 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHhhccC-CCCcccCC-CCCcccchhhhHHHhcCCCccccCCCCCch-hhhhHHHHHHHHHHHHHHhh
Q psy7866 8 LGEHELLEEIQSIANKNEI-WRSYIGLG-YHNCLVPTVIQRNLFENPGWVTQYTPYQPE-IAQGRLESLLNFQTMVSDLT 84 (109)
Q Consensus 8 lsE~ev~rh~~~ls~~N~~-~~~f~g~G-~~~ky~P~vi~~~ia~~~~f~t~yhPyQpe-~sQG~Lq~l~e~q~~l~elt 84 (109)
.||.|++|||++|++||++ +.+|||+| |||||||++ ++..++.|+| +..|||||+ .+||.|+.++|++++|++||
T Consensus 504 ~se~~~~r~~~~l~~~~~~~~~~~~plgsctmk~n~~~-~~~~~~~~~~-~~~hp~~p~~~~~g~~~~~~~~r~~la~i~ 581 (993)
T PLN02414 504 HSEHELLRYLHRLQNKDLSLVHSMIPLGSCTMKLNATT-EMMPVTWPEF-ANIHPFAPVDQAQGYQEMFEDLGDLLCEIT 581 (993)
T ss_pred cCHHHHHHHHHHHhhcccccccCCccCcccccccCchh-hhhhhcCcch-hhcCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999998 89999999 579999996 9999999999 789999998 69999999999999999999
Q ss_pred CCCccCCCCCChhhHHHH-HHHhh
Q psy7866 85 GLSVANASLLDEATAAAE-AMSIC 107 (109)
Q Consensus 85 Gmd~~n~S~ydga~A~~e-a~~ma 107 (109)
|+|. +++.+.+||.+| |.+++
T Consensus 582 g~~~--v~f~pnaga~ge~a~~~v 603 (993)
T PLN02414 582 GFDS--FSLQPNAGAAGEYAGLMV 603 (993)
T ss_pred CCCe--EEEcCCCcHHHHHHHHHH
Confidence 9977 667777777776 44444
No 14
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=99.73 E-value=1.1e-17 Score=136.02 Aligned_cols=106 Identities=41% Similarity=0.671 Sum_probs=97.8
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccC---CCCcccCCCCCcccchhhhHHHhcCCCccccCCCCCchhhhhHHHHHHHHHH
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEI---WRSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTPYQPEIAQGRLESLLNFQT 78 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~---~~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhPyQpe~sQG~Lq~l~e~q~ 78 (109)
++||++.||.++.+|+++++++|.. +..++|.|++++++|.+ ++.++.+++|+++|+||||+.+||.++++.|+++
T Consensus 41 ~~lp~~~~~~~v~~~~~~~~~~~~~~~~~~~~lg~g~~~~~~p~~-~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~e~~~ 119 (447)
T PRK00451 41 LDLPPGLSEMELLRHLRELAAKNKTAEEYPSFLGAGAYDHYIPAV-VDHIISRSEFYTAYTPYQPEISQGTLQAIFEYQT 119 (447)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCcCcccCcccccCCcCcHH-HHHHHhchhHHHhcCCCCCccchHHHHHHHHHHH
Confidence 4699989999999999999988864 56678999999999997 6899999999999999999999999999999999
Q ss_pred HHHHhhCCCccCCCCCChhhHHHHHHHhhc
Q psy7866 79 MVSDLTGLSVANASLLDEATAAAEAMSICH 108 (109)
Q Consensus 79 ~l~eltGmd~~n~S~ydga~A~~ea~~ma~ 108 (109)
++++++|++..+..+.+|+++..+++++++
T Consensus 120 ~la~l~g~~~~~v~~~~g~t~~~~~~~~a~ 149 (447)
T PRK00451 120 MICELTGMDVANASMYDGATALAEAALMAV 149 (447)
T ss_pred HHHHHhCCCcceEEecCcHHHHHHHHHHHH
Confidence 999999999999999999999999998875
No 15
>KOG2040|consensus
Probab=99.30 E-value=1e-12 Score=115.50 Aligned_cols=94 Identities=21% Similarity=0.274 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHhhccC-CCCcccCCC-CCcccchhhhHHHhcCCCccccCCCCCch-hhhhHHHHHHHHHHHHHHhhC
Q psy7866 9 GEHELLEEIQSIANKNEI-WRSYIGLGY-HNCLVPTVIQRNLFENPGWVTQYTPYQPE-IAQGRLESLLNFQTMVSDLTG 85 (109)
Q Consensus 9 sE~ev~rh~~~ls~~N~~-~~~f~g~G~-~~ky~P~vi~~~ia~~~~f~t~yhPyQpe-~sQG~Lq~l~e~q~~l~eltG 85 (109)
||.+++|.+.+|-+|..+ ..+++|+|+ +||-|-.. --.=+..|+| ++.|||+|+ -+||--|.+-|++.+||+|||
T Consensus 519 SEt~lvRYm~kLenKDlSLvhSMiPLGSCTMKLNstt-EmmPiTwp~f-anIHPF~P~eQaqGY~~lf~~Le~~Lc~iTG 596 (1001)
T KOG2040|consen 519 SETELVRYMKKLENKDLSLVHSMIPLGSCTMKLNSTT-EMMPITWPEF-ANIHPFAPVEQAQGYQQLFTELEKDLCEITG 596 (1001)
T ss_pred cHHHHHHHHHHhhccchhhhhhcccccceeeeccccc-eeccccchhh-ccCCCCCchHHHhhHHHHHHHHHHHhheeec
Confidence 999999999999888777 678999995 79999874 3334678999 789999997 599999999999999999999
Q ss_pred CCccCCCCCChhhHHHHHH
Q psy7866 86 LSVANASLLDEATAAAEAM 104 (109)
Q Consensus 86 md~~n~S~ydga~A~~ea~ 104 (109)
.|.+...+-.||.+...+.
T Consensus 597 ~D~~s~QPNsGA~GEYaGL 615 (1001)
T KOG2040|consen 597 FDSFSLQPNSGAQGEYAGL 615 (1001)
T ss_pred ccceeecCCCCcccchhhH
Confidence 9995555555554444343
No 16
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=98.53 E-value=4.7e-07 Score=71.84 Aligned_cols=96 Identities=48% Similarity=0.646 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhhccC-CCCcccCC--CCCcccchhhhHHHhcCCCccccCCCCCchhhhhHHHHHHHHHHHHHHhhCC
Q psy7866 10 EHELLEEIQSIANKNEI-WRSYIGLG--YHNCLVPTVIQRNLFENPGWVTQYTPYQPEIAQGRLESLLNFQTMVSDLTGL 86 (109)
Q Consensus 10 E~ev~rh~~~ls~~N~~-~~~f~g~G--~~~ky~P~vi~~~ia~~~~f~t~yhPyQpe~sQG~Lq~l~e~q~~l~eltGm 86 (109)
|.||+||+.+++++|.. +.+.+++| ...|=.|.+ .+.++..-...+.|+||.|..++|..+..-++.+.++++.|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~ 79 (398)
T cd00613 1 ETEVLRHLKRLASKNKALDQSMSFLGSGTYKHNPPAV-IKRNILENEFYTAYTPYQPEISQGRLQALFELQTMLCELTGM 79 (398)
T ss_pred CHHHHHHHHHHHhcCcCcccCcccccccccCCcCcHH-HHHHhccccCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCC
Confidence 56999999999999987 44434444 567888887 455443322346799999888999999999999999999999
Q ss_pred CccCCCCCChhhHHHHHHHh
Q psy7866 87 SVANASLLDEATAAAEAMSI 106 (109)
Q Consensus 87 d~~n~S~ydga~A~~ea~~m 106 (109)
+..+..+..+++..++++.+
T Consensus 80 ~~~~v~~~~~g~~~~~~~~~ 99 (398)
T cd00613 80 DVANASLQDEATAAAEAAGL 99 (398)
T ss_pred CccceeccCchHHHHHHHHH
Confidence 86566667766656665544
No 17
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=96.39 E-value=0.011 Score=46.18 Aligned_cols=91 Identities=18% Similarity=0.172 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHhhccCCCCcccCCC-CCcccchhhhHHHhcCCCccccCCCCCchhhhhHHHHHHHHHHHHHHhhCC
Q psy7866 8 LGEHELLEEIQSIANKNEIWRSYIGLGY-HNCLVPTVIQRNLFENPGWVTQYTPYQPEIAQGRLESLLNFQTMVSDLTGL 86 (109)
Q Consensus 8 lsE~ev~rh~~~ls~~N~~~~~f~g~G~-~~ky~P~vi~~~ia~~~~f~t~yhPyQpe~sQG~Lq~l~e~q~~l~eltGm 86 (109)
.||.|++|.++++++++.....| +|+ +.+-.|.+ .+.+.. ++.. .+..+..-+|..+..-++.++|+++.|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~a~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~g~ 74 (371)
T PRK13520 2 LSEEEILEELEEYRSEDLKYERI--LSSMCTEPHPIA-RKAHEM---FLET-NLGDPGLFPGTAKLEEEAVEMLGELLHL 74 (371)
T ss_pred CCHHHHHHHHHHHHhcCCCHHHe--eeeeecCchHHH-HHHHHH---HHhc-CCCCcccCccHHHHHHHHHHHHHHHhCC
Confidence 68999999999999999885566 554 55567885 455532 2221 1112222357788888999999999999
Q ss_pred CccCCCCCChhhHHHHHHH
Q psy7866 87 SVANASLLDEATAAAEAMS 105 (109)
Q Consensus 87 d~~n~S~ydga~A~~ea~~ 105 (109)
+..+.-+..|++....+++
T Consensus 75 ~~~~~~~~~ggt~a~~~a~ 93 (371)
T PRK13520 75 PDAYGYITSGGTEANIQAV 93 (371)
T ss_pred CCCCeEEecCcHHHHHHHH
Confidence 8766666677765555543
No 18
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=71.49 E-value=8 Score=22.22 Aligned_cols=28 Identities=11% Similarity=0.029 Sum_probs=24.1
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|++|...+..+|.+.|.+|+.+...|..
T Consensus 6 Lgl~~~~~~~~ik~~y~~l~~~~HPD~~ 33 (55)
T cd06257 6 LGVPPDASDEEIKKAYRKLALKYHPDKN 33 (55)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 6788888999999999999998876654
No 19
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=69.84 E-value=7.3 Score=27.75 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=24.7
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|++++..|..||.+.|++|+.+|..|.+
T Consensus 71 LGv~~~As~~eIkkaYRrLa~~~HPDkg 98 (116)
T PTZ00100 71 LNISPTASKERIREAHKQLMLRNHPDNG 98 (116)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCCC
Confidence 5777778999999999999999998863
No 20
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=65.39 E-value=8.8 Score=25.67 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhCCCccCCCCCChhhHHHHHHHhhc
Q psy7866 73 LLNFQTMVSDLTGLSVANASLLDEATAAAEAMSICH 108 (109)
Q Consensus 73 l~e~q~~l~eltGmd~~n~S~ydga~A~~ea~~ma~ 108 (109)
+-++++.++++++.+..++-+..+++...+.+++++
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~ 37 (170)
T cd01494 2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLAL 37 (170)
T ss_pred HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHh
Confidence 457899999999433334555558888888887765
No 21
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=62.97 E-value=15 Score=21.50 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=24.0
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|+||+..+..+|.+.|.+++.+...|.+
T Consensus 7 Lgl~~~~~~~~ik~ay~~l~~~~HPD~~ 34 (60)
T smart00271 7 LGVPRDASLDEIKKAYRKLALKYHPDKN 34 (60)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 6788888999999999999998876654
No 22
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=57.66 E-value=9.4 Score=27.51 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=19.6
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|++++.++-.+|.+||.+|-..|-...+
T Consensus 64 Lnv~~~~~~eeI~k~y~~Lf~~Nd~~kG 91 (127)
T PF03656_consen 64 LNVKEELSREEIQKRYKHLFKANDPSKG 91 (127)
T ss_dssp HT--G--SHHHHHHHHHHHHHHT-CCCT
T ss_pred cCCCCccCHHHHHHHHHHHHhccCCCcC
Confidence 5677778999999999999999976543
No 23
>KOG0721|consensus
Probab=53.30 E-value=17 Score=28.96 Aligned_cols=31 Identities=13% Similarity=0.011 Sum_probs=25.6
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCCccc
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRSYIG 32 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~f~g 32 (109)
|+|+.+-||.|+.++|++||-+=+.|..--+
T Consensus 105 LGl~pgas~~eIKkaYR~LSik~HPDK~~~~ 135 (230)
T KOG0721|consen 105 LGLDPGASEKEIKKAYRRLSIKYHPDKQPPE 135 (230)
T ss_pred hCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc
Confidence 6788889999999999999998776665333
No 24
>KOG3517|consensus
Probab=49.97 E-value=12 Score=30.73 Aligned_cols=35 Identities=9% Similarity=0.098 Sum_probs=28.9
Q ss_pred CcCCCHHHHHHHHHHHHhhccC------CCCcccCCCCCccc
Q psy7866 5 DMYLGEHELLEEIQSIANKNEI------WRSYIGLGYHNCLV 40 (109)
Q Consensus 5 Pe~lsE~ev~rh~~~ls~~N~~------~~~f~g~G~~~ky~ 40 (109)
|. ++-..|++|++.+-++.-+ .+..+-.|.|+|||
T Consensus 76 PR-VTTP~VV~~IR~~Kq~DPGIFAWEIRDRLlsdgiCDk~N 116 (334)
T KOG3517|consen 76 PR-VTTPKVVKYIRSLKQRDPGIFAWEIRDRLLSDGICDKYN 116 (334)
T ss_pred Cc-cCChhHHHHHHHhhccCCceeeehhhhhhhhcccccccC
Confidence 54 7889999999999887743 35688999999997
No 25
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=49.34 E-value=23 Score=24.96 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhCCCccCCCCCChhhHHHHHHHhhcC
Q psy7866 72 SLLNFQTMVSDLTGLSVANASLLDEATAAAEAMSICHR 109 (109)
Q Consensus 72 ~l~e~q~~l~eltGmd~~n~S~ydga~A~~ea~~ma~r 109 (109)
-.||+|+.|.++.|||.+..+ ...+|++-|+|
T Consensus 22 D~we~rr~mN~l~~~DlVP~P------~ii~aaLrAcR 53 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEP------KVIEAALRACR 53 (103)
T ss_pred cHHHHHHHHHHHhccccCCCc------HHHHHHHHHHH
Confidence 368999999999999997643 45555555443
No 26
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=47.67 E-value=23 Score=25.19 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhCCCccCCCCCChhhHHHHHHHhhcC
Q psy7866 72 SLLNFQTMVSDLTGLSVANASLLDEATAAAEAMSICHR 109 (109)
Q Consensus 72 ~l~e~q~~l~eltGmd~~n~S~ydga~A~~ea~~ma~r 109 (109)
-.||+|..|-.+.|+|.+.. ....+|++-|+|
T Consensus 25 D~we~rrglN~l~~~DlVP~------P~ii~aALrAcR 56 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPE------PKIIEAALRACR 56 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCC------hHHHHHHHHHHH
Confidence 46899999999999999754 345665555443
No 27
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=47.52 E-value=39 Score=20.06 Aligned_cols=27 Identities=4% Similarity=0.048 Sum_probs=23.2
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWR 28 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~ 28 (109)
|+|+...+..||.+-|.+++.+-..|.
T Consensus 6 Lgl~~~~~~~eik~~y~~l~~~~HPD~ 32 (64)
T PF00226_consen 6 LGLPPDASDEEIKKAYRRLSKQYHPDK 32 (64)
T ss_dssp CTSTTTSSHHHHHHHHHHHHHHTSTTT
T ss_pred CCCCCCCCHHHHHHHHHhhhhcccccc
Confidence 678888899999999999999887654
No 28
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.81 E-value=56 Score=26.43 Aligned_cols=72 Identities=10% Similarity=0.137 Sum_probs=42.7
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCC--CCcccCCCCCcccchhhhHHHhcCCCccccCCC------------CCchhhhh
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIW--RSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTP------------YQPEIAQG 68 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~--~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhP------------yQpe~sQG 68 (109)
.||+..||.|+.+.+.+|......+ .-++|+- .|.+..-|.+.|.-.-.- .+.|| |.|-+.+|
T Consensus 66 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp--~~i~~~~i~~~I~p~KDV-DGl~~~N~g~l~~~~~~~~PcTp~a 142 (282)
T PRK14169 66 RLPEATTQADLLAKVAELNHDPDVDAILVQLPLP--AGLDEQAVIDAIDPDKDV-DGFSPVSVGRLWANEPTVVASTPYG 142 (282)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCC--CCCCHHHHHhhcCcccCc-ccCChhhhHHHhcCCCCCCCCCHHH
Confidence 5898899999999998885533222 1123432 244443334444433332 44454 45667888
Q ss_pred HHHHHHHHH
Q psy7866 69 RLESLLNFQ 77 (109)
Q Consensus 69 ~Lq~l~e~q 77 (109)
.++.|-.|+
T Consensus 143 vi~lL~~~~ 151 (282)
T PRK14169 143 IMALLDAYD 151 (282)
T ss_pred HHHHHHHhC
Confidence 888886663
No 29
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=45.40 E-value=19 Score=30.43 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=39.9
Q ss_pred CcccCCCCCcccchhhhHHHhcCC-CccccCCCCCchhhhhHHHHHHHHHHHHHHhhCCC
Q psy7866 29 SYIGLGYHNCLVPTVIQRNLFENP-GWVTQYTPYQPEIAQGRLESLLNFQTMVSDLTGLS 87 (109)
Q Consensus 29 ~f~g~G~~~ky~P~vi~~~ia~~~-~f~t~yhPyQpe~sQG~Lq~l~e~q~~l~eltGmd 87 (109)
.|+|+||. |.|.+ .+.++.++ +| ..-+=.-=.+..++|+.+.++-+.+.+=.|.+
T Consensus 4 ~iIGgGS~--~tp~l-i~~l~~~~~~l-~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~ 59 (425)
T cd05197 4 AIIGGGSS--FTPEL-VSGLLKTPEEL-PISEVTLYDIDEERLDIILTIAKRYVEEVGAD 59 (425)
T ss_pred EEECCchH--hHHHH-HHHHHcChhhC-CCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCC
Confidence 47899996 99997 79999988 45 21110111356899999999988888777765
No 30
>PHA03102 Small T antigen; Reviewed
Probab=44.43 E-value=27 Score=25.88 Aligned_cols=28 Identities=0% Similarity=-0.261 Sum_probs=25.0
Q ss_pred CCCCcCC--CHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYL--GEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~l--sE~ev~rh~~~ls~~N~~~~~ 29 (109)
|+|+... |+.||.+-|++++.+++.|.+
T Consensus 11 LGl~~~A~~s~~eIKkAYr~la~~~HPDkg 40 (153)
T PHA03102 11 LGLPRSAWGNLPLMRKAYLRKCLEFHPDKG 40 (153)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 6788778 999999999999999998874
No 31
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=43.88 E-value=28 Score=24.62 Aligned_cols=26 Identities=15% Similarity=0.288 Sum_probs=22.8
Q ss_pred CCchhhhhHHHHHHHHHHHHHHhhCC
Q psy7866 61 YQPEIAQGRLESLLNFQTMVSDLTGL 86 (109)
Q Consensus 61 yQpe~sQG~Lq~l~e~q~~l~eltGm 86 (109)
+++|++|.-++-||+.++-|..+++.
T Consensus 5 F~SeiVq~e~~~if~~yq~l~~~~~~ 30 (108)
T PF08855_consen 5 FDSEIVQDELQDIFEDYQELMQMGSK 30 (108)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999999999988888754
No 32
>KOG4539|consensus
Probab=43.85 E-value=31 Score=27.86 Aligned_cols=68 Identities=24% Similarity=0.322 Sum_probs=45.4
Q ss_pred CCcCCCHHHHHHHHHHHHhhccC------CCCcccCCCCCcccchhhhHHHhcCCCccccCCCCCch-hhhhHHHHHH
Q psy7866 4 FDMYLGEHELLEEIQSIANKNEI------WRSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTPYQPE-IAQGRLESLL 74 (109)
Q Consensus 4 LPe~lsE~ev~rh~~~ls~~N~~------~~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhPyQpe-~sQG~Lq~l~ 74 (109)
-|.+++-.+++|.++++++.-.. .-+.+|+-.+ +|-|+..-|-+-|+||-.|-.|--- .-||.-+..-
T Consensus 123 yPP~l~s~~~lr~l~~~~q~g~i~Hkkylvg~v~gLPLT---ipfiliPLiPNiPgFyl~yRaY~n~rA~qGs~~L~~ 197 (274)
T KOG4539|consen 123 YPPSLDSRLVLRRLRHIAQSGTILHKKYLVGSVTGLPLT---IPFILIPLIPNIPGFYLLYRAYSNWRALQGSEKLLK 197 (274)
T ss_pred cCCCCChHHHHHHHHHHHhhcchhhhheeeeeeecCccc---chheeeccCCCCCcceehhhhhhhHHHHhhHHHHHH
Confidence 36679889999999999876543 1234444433 2333334456679999888888765 4788876543
No 33
>KOG4077|consensus
Probab=42.54 E-value=28 Score=25.89 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhCCCccCCCCCChhhHHHHHHHhhcC
Q psy7866 72 SLLNFQTMVSDLTGLSVANASLLDEATAAAEAMSICHR 109 (109)
Q Consensus 72 ~l~e~q~~l~eltGmd~~n~S~ydga~A~~ea~~ma~r 109 (109)
-.||+|.-|.++.++|.+.. .+..||.+-|.|
T Consensus 64 D~wEvrkglN~l~~yDlVP~------pkvIEaaLRA~R 95 (149)
T KOG4077|consen 64 DGWEVRKGLNNLFDYDLVPS------PKVIEAALRACR 95 (149)
T ss_pred hHHHHHHHHHhhhccccCCC------hHHHHHHHHHHH
Confidence 45999999999999999864 457777766554
No 34
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.33 E-value=57 Score=26.50 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=41.9
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCC--CCcccCCCCCcccchhhhHHHhcCCCccccCCC------------CCchhhhh
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIW--RSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTP------------YQPEIAQG 68 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~--~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhP------------yQpe~sQG 68 (109)
.||+..+|.|+.+-+.+|.+....+ .-++|+- .|.++.-|.+.|.-.-.- .++|| |.|-+..|
T Consensus 74 ~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlPLP--~~i~~~~i~~~I~p~KDV-DGl~~~N~g~l~~g~~~~~PcTp~a 150 (287)
T PRK14176 74 FLPADTTQEELLELIDSLNKRKDVHGILLQLPLP--KHLDPQEAMEAIDPAKDA-DGFHPYNMGKLMIGDEGLVPCTPHG 150 (287)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCC--CCCCHHHHHhccCccccc-cccChhhhhhHhcCCCCCCCCcHHH
Confidence 5898899999999998886544322 1233442 245544333444333222 34444 44566788
Q ss_pred HHHHHHHHH
Q psy7866 69 RLESLLNFQ 77 (109)
Q Consensus 69 ~Lq~l~e~q 77 (109)
.+++|-.|+
T Consensus 151 v~~ll~~~~ 159 (287)
T PRK14176 151 VIRALEEYG 159 (287)
T ss_pred HHHHHHHcC
Confidence 888776653
No 35
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=40.77 E-value=19 Score=20.81 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=15.7
Q ss_pred CCCcCCCHHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQSI 20 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~l 20 (109)
+||+.++|.||.++|...
T Consensus 5 nlp~~~t~~~l~~~f~~~ 22 (70)
T PF00076_consen 5 NLPPDVTEEELRDFFSQF 22 (70)
T ss_dssp SETTTSSHHHHHHHHHTT
T ss_pred CCCCcCCHHHHHHHHHHh
Confidence 689999999999999653
No 36
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=40.70 E-value=65 Score=22.29 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=18.1
Q ss_pred CCcCCCHHHHHHHHHHHHhhcc
Q psy7866 4 FDMYLGEHELLEEIQSIANKNE 25 (109)
Q Consensus 4 LPe~lsE~ev~rh~~~ls~~N~ 25 (109)
||+ +|..|+.+.+..+-++..
T Consensus 9 lp~-lt~~~i~~QI~yll~qG~ 29 (99)
T cd03527 9 LPP-LTDEQIAKQIDYIISNGW 29 (99)
T ss_pred CCC-CCHHHHHHHHHHHHhCCC
Confidence 897 999999999988877654
No 37
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.68 E-value=70 Score=26.06 Aligned_cols=72 Identities=14% Similarity=0.272 Sum_probs=40.9
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCC--CCcccCCCCCcccchhhhHHHhcCCCccccCCC------------CCchhhhh
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIW--RSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTP------------YQPEIAQG 68 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~--~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhP------------yQpe~sQG 68 (109)
.||+..+|.|+.+.+.+|.+....+ .-++|+- .|.+..-|.+.|.-.-.- .++|| |.|-+.+|
T Consensus 67 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP--~~i~~~~i~~~I~p~KDV-DGl~~~N~g~l~~~~~~~~PcTp~a 143 (293)
T PRK14185 67 RYESDVTEEELLAKVRELNQDDDVDGFIVQLPLP--KHISEQKVIEAIDYRKDV-DGFHPINVGRMSIGLPCFVSATPNG 143 (293)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCC--CCCCHHHHHhccCcccCc-CCCCHhhHHHHhCCCCCCCCCCHHH
Confidence 5899889999999999886544432 1233442 234433333333322222 33333 34556788
Q ss_pred HHHHHHHHH
Q psy7866 69 RLESLLNFQ 77 (109)
Q Consensus 69 ~Lq~l~e~q 77 (109)
.++.|-.|+
T Consensus 144 v~~lL~~~~ 152 (293)
T PRK14185 144 ILELLKRYH 152 (293)
T ss_pred HHHHHHHhC
Confidence 888887664
No 38
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=38.62 E-value=27 Score=29.69 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=38.7
Q ss_pred CcccCCCCCcccchhhhHHHhcCC-CccccCCCCCchhhhhHHHHHHHHHHHHHHhhCCC
Q psy7866 29 SYIGLGYHNCLVPTVIQRNLFENP-GWVTQYTPYQPEIAQGRLESLLNFQTMVSDLTGLS 87 (109)
Q Consensus 29 ~f~g~G~~~ky~P~vi~~~ia~~~-~f~t~yhPyQpe~sQG~Lq~l~e~q~~l~eltGmd 87 (109)
.|+|+||. |.|.+ .+.++.++ ++ ..-+=.-=.+..++|+.+..+-+.+.+=.|.+
T Consensus 4 ~iIGaGS~--~tp~l-i~~l~~~~~~l-~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~ 59 (437)
T cd05298 4 VIAGGGST--YTPGI-VKSLLDRKEDF-PLRELVLYDIDAERQEKVAEAVKILFKENYPE 59 (437)
T ss_pred EEECCcHH--HHHHH-HHHHHhCcccC-CCCEEEEECCCHHHHHHHHHHHHHHHHhhCCC
Confidence 47899996 99997 68888885 34 21111111357899999999988887766655
No 39
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=38.06 E-value=35 Score=18.91 Aligned_cols=17 Identities=47% Similarity=0.671 Sum_probs=14.0
Q ss_pred HHHHHHHHhhCCCccCC
Q psy7866 75 NFQTMVSDLTGLSVANA 91 (109)
Q Consensus 75 e~q~~l~eltGmd~~n~ 91 (109)
+|-+++-+|||.+...+
T Consensus 14 ~Fr~lVQ~LTG~~~~~~ 30 (31)
T PF05678_consen 14 NFRALVQRLTGAPSAPA 30 (31)
T ss_pred HHHHHHHHhHCcCCCCC
Confidence 68899999999987543
No 40
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=35.04 E-value=41 Score=23.98 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=20.8
Q ss_pred HHHHHHHhhCCCccCCCCCChhhHHHHHHHh
Q psy7866 76 FQTMVSDLTGLSVANASLLDEATAAAEAMSI 106 (109)
Q Consensus 76 ~q~~l~eltGmd~~n~S~ydga~A~~ea~~m 106 (109)
+.+++++++|.++.-... +.++|.+-|++-
T Consensus 165 ~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A 194 (198)
T PF02782_consen 165 WMQILADVLGRPVVRPEV-EEASALGAALLA 194 (198)
T ss_dssp HHHHHHHHHTSEEEEESS-STHHHHHHHHHH
T ss_pred HHHHHHHHhCCceEeCCC-CchHHHHHHHHH
Confidence 456777888888766655 677777776654
No 41
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.98 E-value=73 Score=25.78 Aligned_cols=72 Identities=15% Similarity=0.226 Sum_probs=41.7
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCC--CCcccCCCCCcccchhhhHHHhcCCCccccCCC------------CCchhhhh
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIW--RSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTP------------YQPEIAQG 68 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~--~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhP------------yQpe~sQG 68 (109)
.||+..+|.|+.+.+.+|.+....+ .-++|+. .|....-|.+.|.-.-.- .++|| |.|-+.+|
T Consensus 68 ~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp--~~i~~~~i~~~I~p~KDV-DGl~~~n~g~l~~~~~~~~PcTp~a 144 (285)
T PRK14189 68 RYPADLSEAELLARIDELNRDPKIHGILVQLPLP--KHIDSHKVIEAIAPEKDV-DGFHVANAGALMTGQPLFRPCTPYG 144 (285)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCC--CCCCHHHHHhhcCcccCc-ccCChhhhhHhhCCCCCCcCCCHHH
Confidence 5898899999999998874433222 1234543 244443333444332222 33333 45667788
Q ss_pred HHHHHHHHH
Q psy7866 69 RLESLLNFQ 77 (109)
Q Consensus 69 ~Lq~l~e~q 77 (109)
.++.|-.|+
T Consensus 145 ii~lL~~~~ 153 (285)
T PRK14189 145 VMKMLESIG 153 (285)
T ss_pred HHHHHHHcC
Confidence 888887764
No 42
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=34.71 E-value=63 Score=25.77 Aligned_cols=46 Identities=11% Similarity=0.013 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHhhc-cCCCCc--ccCCCCCcccchhhhHHHhcCCCc
Q psy7866 8 LGEHELLEEIQSIANKN-EIWRSY--IGLGYHNCLVPTVIQRNLFENPGW 54 (109)
Q Consensus 8 lsE~ev~rh~~~ls~~N-~~~~~f--~g~G~~~ky~P~vi~~~ia~~~~f 54 (109)
.|+.++++||+.++... ....-. +|.-+-....|.+ .++|++.|.+
T Consensus 117 ~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~-l~~L~~~pni 165 (309)
T cd00952 117 LDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAA-WAELAQIPQV 165 (309)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHH-HHHHhcCCCE
Confidence 58999999999999976 221111 2432223567886 7889888877
No 43
>cd00259 STNV STNV domain; satellite tobacco necrosis virus (STNV) are small plant viruses which are completely dependent on the presence of a specific helper virus, TNV, for their replication; 60 identical subunits, this domain is one of them; form an icosahedral shell around a single RNA molecule. Half of the RNA codes for the coat protein with the other half being non-coding. The STNV domain has a "Swiss roll" Greek key topology with its two 4-stranded antiparallel beta sheets
Probab=33.48 E-value=23 Score=27.30 Aligned_cols=60 Identities=25% Similarity=0.463 Sum_probs=41.1
Q ss_pred ccchhhhHHHhcCCCccccCCCCCchhhhhHHHHHHHHHHHHHHhhCCCccCC--------CCCChhhHHHHH
Q psy7866 39 LVPTVIQRNLFENPGWVTQYTPYQPEIAQGRLESLLNFQTMVSDLTGLSVANA--------SLLDEATAAAEA 103 (109)
Q Consensus 39 y~P~vi~~~ia~~~~f~t~yhPyQpe~sQG~Lq~l~e~q~~l~eltGmd~~n~--------S~ydga~A~~ea 103 (109)
-.|+| .| +.+.-.|...|-|.. .-|-+...+-++ ++.|.+||..+..- -.|.||+|.|.+
T Consensus 98 TtPav-te-VL~sa~~~sqYnp~t--~qQ~RFtil~dv-el~cS~tg~si~~~~~~~~k~~v~YnGaa~vAas 165 (195)
T cd00259 98 TTPAV-TE-VLNSASFMSQYNPLT--LQQKRFTILKDV-ELDCSLTGESIKHRLTFNQKVQVFYNGAAAVAAS 165 (195)
T ss_pred CCchH-HH-HhhhhhhhhccCcch--hhhhheehhhhh-hhccccccchhhheeeecCceEEEecchhhHhhc
Confidence 45885 44 444455877666632 358888887777 67889999887543 458888877753
No 44
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.19 E-value=1e+02 Score=25.00 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=40.8
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCC--CCcccCCCCCcccchhhhHHHhcCCCccccCCC------------CCchhhhh
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIW--RSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTP------------YQPEIAQG 68 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~--~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhP------------yQpe~sQG 68 (109)
.||+..||.|+.+.+.+|.+....+ .-++|+- .|.+..-|.+.|.-.-.- .++|| |.|-+..|
T Consensus 67 ~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP--~~i~~~~i~~~I~p~KDV-DGl~~~n~g~l~~g~~~~~PcTp~a 143 (281)
T PRK14183 67 EMPSTISQKEILETIAMMNNNPNIDGILVQLPLP--KHIDTTKILEAIDPKKDV-DGFHPYNVGRLVTGLDGFVPCTPLG 143 (281)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCC--CCCCHHHHHhccCchhcc-cccChhhhhHHhcCCCCCCCCcHHH
Confidence 5899899999999998885433322 1234542 233332223333322222 33343 45667788
Q ss_pred HHHHHHHHH
Q psy7866 69 RLESLLNFQ 77 (109)
Q Consensus 69 ~Lq~l~e~q 77 (109)
.++.|-.|+
T Consensus 144 vi~lL~~~~ 152 (281)
T PRK14183 144 VMELLEEYE 152 (281)
T ss_pred HHHHHHHcC
Confidence 888887764
No 45
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.06 E-value=99 Score=25.07 Aligned_cols=80 Identities=18% Similarity=0.164 Sum_probs=44.2
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCC--CCcccCCCCCcccchhhhHHHhcCCCccccCCC------------CCchhhhh
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIW--RSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTP------------YQPEIAQG 68 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~--~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhP------------yQpe~sQG 68 (109)
.||+..||.|+.+-+.+|.+....+ .-++|+- .|....-|.+.|.-.-.- .++|| |.|-+.+|
T Consensus 68 ~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp--~~~~~~~i~~~I~p~KDV-DGl~~~n~g~l~~~~~~~~PcTp~a 144 (296)
T PRK14188 68 KLPADTSQAELLALIARLNADPAIHGILVQLPLP--KHLDSEAVIQAIDPEKDV-DGLHVVNAGRLATGETALVPCTPLG 144 (296)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCC--CCCCHHHHHhccCccccc-ccCChhhHHHHhCCCCCCcCCCHHH
Confidence 5898899999999998885544322 1233432 234433223333322222 33444 35667888
Q ss_pred HHHHHHHHHHHHHHhhCCCc
Q psy7866 69 RLESLLNFQTMVSDLTGLSV 88 (109)
Q Consensus 69 ~Lq~l~e~q~~l~eltGmd~ 88 (109)
.++.|-.|.- ++.|-.+
T Consensus 145 i~~ll~~~~i---~~~Gk~V 161 (296)
T PRK14188 145 CMMLLRRVHG---DLSGLNA 161 (296)
T ss_pred HHHHHHHhCC---CCCCCEE
Confidence 8888776532 4444444
No 46
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=32.85 E-value=49 Score=26.39 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHHHHHHhhCCCccCCCCCChhhHHHHHHHhhc
Q psy7866 66 AQGRLESLLNFQTMVSDLTGLSVANASLLDEATAAAEAMSICH 108 (109)
Q Consensus 66 sQG~Lq~l~e~q~~l~eltGmd~~n~S~ydga~A~~ea~~ma~ 108 (109)
++|.-..+.++++.+++++|.+.+.. ..|++....++..++
T Consensus 46 ~~~~~~~~~~~~e~lA~~~g~~~~~i--~~g~~~a~~~~~~~l 86 (370)
T TIGR02539 46 DQITKPPIHDFLEDLAEFLGMDEARV--THGAREGKFAVMHAL 86 (370)
T ss_pred ccccchHHHHHHHHHHHHhCCCceEE--ECChHHHHHHHHHHh
Confidence 56667788899999999999997654 688887777776653
No 47
>COG2122 Uncharacterized conserved protein [Function unknown]
Probab=32.28 E-value=36 Score=27.40 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=18.0
Q ss_pred hHHHhcCCCccccCCCCCchh
Q psy7866 45 QRNLFENPGWVTQYTPYQPEI 65 (109)
Q Consensus 45 ~~~ia~~~~f~t~yhPyQpe~ 65 (109)
-+.|..+|+|+|+|-|+.+..
T Consensus 49 e~yI~~nP~f~ts~~pi~~~e 69 (256)
T COG2122 49 EDYILKNPEFLTSLEPIECRE 69 (256)
T ss_pred HHHHHhCcchhcccceeeccc
Confidence 578999999999999987754
No 48
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.99 E-value=1e+02 Score=25.00 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=40.6
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCC--CCcccCCCCCcccchhhhHHHhcCCCccccCCC------------CCchhhhh
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIW--RSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTP------------YQPEIAQG 68 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~--~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhP------------yQpe~sQG 68 (109)
.||+..||.|+.+-+.+|.+....+ .-++|+- .|.+..-|.+.|.-.-.- ..+|| |.|-+..|
T Consensus 67 ~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP--~~id~~~i~~~I~p~KDV-DGl~~~N~g~l~~~~~~~~PcTp~a 143 (286)
T PRK14184 67 RLPADTTQEELEDLIAELNARPDIDGILLQLPLP--KGLDSQRCLELIDPAKDV-DGFHPENMGRLALGLPGFRPCTPAG 143 (286)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCcCceEEEecCCC--CCCCHHHHHhccCcccCc-ccCCHhhHHHHhCCCCCCCCCCHHH
Confidence 5898899999999998885433222 1234442 244443333333332222 33333 34556778
Q ss_pred HHHHHHHHH
Q psy7866 69 RLESLLNFQ 77 (109)
Q Consensus 69 ~Lq~l~e~q 77 (109)
.++.|-.|+
T Consensus 144 v~~lL~~~~ 152 (286)
T PRK14184 144 VMTLLERYG 152 (286)
T ss_pred HHHHHHHhC
Confidence 888877764
No 49
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=31.97 E-value=61 Score=28.05 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=41.5
Q ss_pred CcccCCCCCcccchhhhHHHhcCCCccccCCCCCchhhhhHHHHHHHHHHHHHHhhCCCc
Q psy7866 29 SYIGLGYHNCLVPTVIQRNLFENPGWVTQYTPYQPEIAQGRLESLLNFQTMVSDLTGLSV 88 (109)
Q Consensus 29 ~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhPyQpe~sQG~Lq~l~e~q~~l~eltGmd~ 88 (109)
.|+|+||. |.|+.|.--|...|+| ..-+=.-=++.+++|++++.+-+-+.+=.|-|+
T Consensus 7 ~iIGgGSt--~tp~~v~g~l~~~e~l-~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~ 63 (442)
T COG1486 7 VIIGGGST--YTPKLLLGDLARTEEL-PVRELALYDIDEERLKIIAILAKKLVEEAGAPV 63 (442)
T ss_pred EEECCCcc--ccHHHHHHHHhcCccC-CcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCe
Confidence 58999983 6678766667777776 322222224689999999999998888888874
No 50
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.68 E-value=88 Score=25.35 Aligned_cols=72 Identities=17% Similarity=0.257 Sum_probs=40.9
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCC--CCcccCCCCCcccchhhhHHHhcCCCccccCCC------------CCchhhhh
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIW--RSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTP------------YQPEIAQG 68 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~--~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhP------------yQpe~sQG 68 (109)
.||+..||.|+.+.+.+|.+....+ .-++|+- .|.+..-|.+.|.-.-.- .++|| |.|-+..|
T Consensus 67 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PlP--~~i~~~~i~~~I~p~KDV-DGl~~~n~g~l~~g~~~~~PcTp~a 143 (285)
T PRK14191 67 TLQENTTEAELLSLIKDLNTDQNIDGILVQLPLP--RHIDTKMVLEAIDPNKDV-DGFHPLNIGKLCSQLDGFVPATPMG 143 (285)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCC--CCCCHHHHHhcCCccccc-cccChhhHHHHhcCCCCCCCCcHHH
Confidence 5899899999999998885544322 1234542 244433333333222221 33333 35667788
Q ss_pred HHHHHHHHH
Q psy7866 69 RLESLLNFQ 77 (109)
Q Consensus 69 ~Lq~l~e~q 77 (109)
.++.|-.|+
T Consensus 144 vi~lL~~~~ 152 (285)
T PRK14191 144 VMRLLKHYH 152 (285)
T ss_pred HHHHHHHhC
Confidence 888887664
No 51
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.11 E-value=1.3e+02 Score=24.36 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=44.7
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCC--CCcccCCCCCcccchhhhHHHhcCCCccccCCC------------CCchhhhh
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIW--RSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTP------------YQPEIAQG 68 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~--~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhP------------yQpe~sQG 68 (109)
.||+..||.|+.+.+.+|.+....+ .-++|+- .|.+...|.+.|.-.-.- .++|| |.|-+..|
T Consensus 68 ~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlPlp--~~i~~~~i~~~I~p~KDV-DGl~~~N~g~l~~~~~~~~PcTp~a 144 (284)
T PRK14179 68 RLPETISQEELLDLIERYNQDPTWHGILVQLPLP--KHINEEKILLAIDPKKDV-DGFHPMNTGHLWSGRPVMIPCTPAG 144 (284)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCC--CCCCHHHHHhccCccccc-cccCHhhHHHHhCCCCCCcCCCHHH
Confidence 5899899999999998885543322 2234542 244444333333322222 33343 34566788
Q ss_pred HHHHHHHHHHHHHHhhCCCc
Q psy7866 69 RLESLLNFQTMVSDLTGLSV 88 (109)
Q Consensus 69 ~Lq~l~e~q~~l~eltGmd~ 88 (109)
.++.|-.|.- ++.|-++
T Consensus 145 vi~lL~~~~i---~l~Gk~v 161 (284)
T PRK14179 145 IMEMFREYNV---ELEGKHA 161 (284)
T ss_pred HHHHHHHhCC---CCCCCEE
Confidence 8887766533 3444444
No 52
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=31.03 E-value=85 Score=24.53 Aligned_cols=46 Identities=17% Similarity=0.025 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHhhc-cCCCCc--ccCCCCCcccchhhhHHHhcCCCc
Q psy7866 8 LGEHELLEEIQSIANKN-EIWRSY--IGLGYHNCLVPTVIQRNLFENPGW 54 (109)
Q Consensus 8 lsE~ev~rh~~~ls~~N-~~~~~f--~g~G~~~ky~P~vi~~~ia~~~~f 54 (109)
.|+.++++||.++++.. -...-. +|.-+=....|.+ ..+|++.|.+
T Consensus 110 ~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~-~~~L~~~pni 158 (288)
T cd00954 110 FSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQ-FLELFEIPNV 158 (288)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHH-HHHHhcCCCE
Confidence 48999999999999876 221111 2321212456775 6888888877
No 53
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=30.93 E-value=82 Score=24.16 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHhhccCCCCc--ccCCCCCcccchhhhHHHhcCCCc
Q psy7866 8 LGEHELLEEIQSIANKNEIWRSY--IGLGYHNCLVPTVIQRNLFENPGW 54 (109)
Q Consensus 8 lsE~ev~rh~~~ls~~N~~~~~f--~g~G~~~ky~P~vi~~~ia~~~~f 54 (109)
.|+.++++||+++++..-....+ +|.-+=..+.|.. ..++++.|.+
T Consensus 106 ~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~-~~~L~~~~~v 153 (281)
T cd00408 106 PSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPET-IARLAEHPNI 153 (281)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHH-HHHHhcCCCE
Confidence 58999999999999973211112 2332223567886 6888887776
No 54
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=30.83 E-value=65 Score=26.13 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=25.2
Q ss_pred CCCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 1 MTNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 1 ~l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
.|++|...|+.||.+-|.+||.+.+.|.+
T Consensus 5 ~Lgv~~~a~~~~ik~ayr~la~~~HPD~~ 33 (354)
T TIGR02349 5 ILGVSKDASEEEIKKAYRKLAKKYHPDRN 33 (354)
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 36788888999999999999999887765
No 55
>PLN02417 dihydrodipicolinate synthase
Probab=29.05 E-value=65 Score=25.22 Aligned_cols=47 Identities=9% Similarity=0.159 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHhhccCCCCc--ccCCCCCcccchhhhHHHhcCCCccccC
Q psy7866 8 LGEHELLEEIQSIANKNEIWRSY--IGLGYHNCLVPTVIQRNLFENPGWVTQY 58 (109)
Q Consensus 8 lsE~ev~rh~~~ls~~N~~~~~f--~g~G~~~ky~P~vi~~~ia~~~~f~t~y 58 (109)
.|+.++++||+++++.. . .-+ +|.-+-....|.+ .+++++.|.+ .++
T Consensus 110 ~~~~~i~~~f~~va~~~-p-i~lYn~P~~tg~~l~~~~-l~~l~~~pni-~gi 158 (280)
T PLN02417 110 TSQEGLIKHFETVLDMG-P-TIIYNVPGRTGQDIPPEV-IFKIAQHPNF-AGV 158 (280)
T ss_pred CCHHHHHHHHHHHHhhC-C-EEEEEChhHhCcCCCHHH-HHHHhcCCCE-EEE
Confidence 48999999999999865 2 112 2432223567886 6889888876 444
No 56
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.76 E-value=1.1e+02 Score=24.78 Aligned_cols=72 Identities=19% Similarity=0.285 Sum_probs=40.7
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCC--CCcccCCCCCcccchhhhHHHhcCCCccccCCC------------CCchhhhh
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIW--RSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTP------------YQPEIAQG 68 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~--~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhP------------yQpe~sQG 68 (109)
.||+..||.|+.+-+.+|.+....+ .-++|+- .|....-|.+.|.-.-.- .++|| |.|-+.+|
T Consensus 68 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLp--~~i~~~~i~~~I~p~KDV-DGl~~~n~g~l~~~~~~~~PcTp~a 144 (284)
T PRK14190 68 EFPADITEEELLALIDRLNADPRINGILVQLPLP--KHIDEKAVIERISPEKDV-DGFHPINVGRMMLGQDTFLPCTPHG 144 (284)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCC--CCCCHHHHHhcCCccccc-cccCHhhHHHHhcCCCCCCCCCHHH
Confidence 5898899999999998885543322 1234542 233333223333222211 23333 45667888
Q ss_pred HHHHHHHHH
Q psy7866 69 RLESLLNFQ 77 (109)
Q Consensus 69 ~Lq~l~e~q 77 (109)
.++.|-.|+
T Consensus 145 v~~lL~~~~ 153 (284)
T PRK14190 145 ILELLKEYN 153 (284)
T ss_pred HHHHHHHcC
Confidence 888887764
No 57
>PRK14277 chaperone protein DnaJ; Provisional
Probab=28.72 E-value=74 Score=26.32 Aligned_cols=28 Identities=18% Similarity=0.094 Sum_probs=24.7
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|++|...|+.||.+.|.+||.+-+.|.+
T Consensus 11 Lgv~~~a~~~eik~ayr~la~~~HPD~~ 38 (386)
T PRK14277 11 LGVDRNATEEEIKKAYRRLAKKYHPDLN 38 (386)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCCCcC
Confidence 6788889999999999999999877654
No 58
>PRK14281 chaperone protein DnaJ; Provisional
Probab=28.16 E-value=77 Score=26.39 Aligned_cols=28 Identities=11% Similarity=0.041 Sum_probs=25.0
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|.+|...|+.||.+-|.+|+.+.+.|.+
T Consensus 9 Lgv~~~a~~~eikkayr~la~~~HPD~~ 36 (397)
T PRK14281 9 LGVSRSADKDEIKKAYRKLALKYHPDKN 36 (397)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCCCcC
Confidence 6788889999999999999999987764
No 59
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=27.42 E-value=84 Score=25.07 Aligned_cols=28 Identities=11% Similarity=-0.102 Sum_probs=24.5
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|.++...|..||.+.|.+|+.+.+.|.+
T Consensus 10 Lgv~~~a~~~eik~ayr~la~k~HPD~~ 37 (306)
T PRK10266 10 MGVKPTDDLKTIKTAYRRLARKYHPDVS 37 (306)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 5788888999999999999999987753
No 60
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=27.18 E-value=69 Score=17.78 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.9
Q ss_pred CCCcCCCHHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQSI 20 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~l 20 (109)
+||...++.++.+++.+.
T Consensus 6 ~l~~~~~~~~i~~~~~~~ 23 (74)
T cd00590 6 NLPPDVTEEDLRELFSKF 23 (74)
T ss_pred CCCCccCHHHHHHHHHhc
Confidence 688889999999999875
No 61
>smart00360 RRM RNA recognition motif.
Probab=27.11 E-value=68 Score=17.59 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=15.5
Q ss_pred CCCcCCCHHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQSI 20 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~l 20 (109)
+||...++.+|.+++...
T Consensus 3 ~l~~~~~~~~l~~~f~~~ 20 (71)
T smart00360 3 NLPPDVTEEELRELFSKF 20 (71)
T ss_pred CCCcccCHHHHHHHHHhh
Confidence 688889999999999754
No 62
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.74 E-value=1.3e+02 Score=24.28 Aligned_cols=71 Identities=17% Similarity=0.285 Sum_probs=41.0
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCCCC---cccCCCCCcccchhhhHHHhcCCCccccCCC------------CCchhhh
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIWRS---YIGLGYHNCLVPTVIQRNLFENPGWVTQYTP------------YQPEIAQ 67 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~~~---f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhP------------yQpe~sQ 67 (109)
.||+..+|.|+.+.+.+|.+.... .+ ++|+- .|.+..-|.+.|.-.-.- .++|| |.|-+..
T Consensus 68 ~l~~~~~~~~l~~~I~~lN~d~~V-~GIivq~Plp--~~i~~~~i~~~I~p~KDV-DGl~~~n~g~l~~~~~~~~PcTp~ 143 (286)
T PRK14175 68 HLEETATEEEVLNELNRLNNDDSV-SGILVQVPLP--KQVSEQKILEAINPEKDV-DGFHPINIGKLYIDEQTFVPCTPL 143 (286)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCC-CEEEEeCCCC--CCCCHHHHHhccCcccCc-ccCCccchHhHhcCCCCCCCCcHH
Confidence 588889999999999888543322 23 33442 244444334444333322 44444 3456678
Q ss_pred hHHHHHHHHH
Q psy7866 68 GRLESLLNFQ 77 (109)
Q Consensus 68 G~Lq~l~e~q 77 (109)
|.++.+-.++
T Consensus 144 ai~~ll~~~~ 153 (286)
T PRK14175 144 GIMEILKHAD 153 (286)
T ss_pred HHHHHHHHcC
Confidence 8888776653
No 63
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.74 E-value=1.5e+02 Score=24.13 Aligned_cols=72 Identities=13% Similarity=0.194 Sum_probs=40.3
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCC--CCcccCCCCCcccchhhhHHHhcCCCccccCCC------------CCchhhhh
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIW--RSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTP------------YQPEIAQG 68 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~--~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhP------------yQpe~sQG 68 (109)
.||+..||.|+.+-+.+|.+.-..+ .-++|+- .|.+..-|.+.|.-.-.- .++|| |.|-+..|
T Consensus 67 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP--~~i~~~~i~~~I~p~KDV-DGl~~~n~g~l~~g~~~~~PcTp~a 143 (297)
T PRK14167 67 EIDPDAPAEELYDTIDELNADEDVHGILVQMPVP--DHVDDREVLRRIDPAKDV-DGFHPENVGRLVAGDARFKPCTPHG 143 (297)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCC--CCCCHHHHHhccCcccCc-ccCChhhhHHHhCCCCCCCCCCHHH
Confidence 5898899999999998885533221 1233442 133333233333332222 33333 45667788
Q ss_pred HHHHHHHHH
Q psy7866 69 RLESLLNFQ 77 (109)
Q Consensus 69 ~Lq~l~e~q 77 (109)
.++.|-.|+
T Consensus 144 vi~lL~~~~ 152 (297)
T PRK14167 144 IQKLLAAAG 152 (297)
T ss_pred HHHHHHHhC
Confidence 888877664
No 64
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=26.33 E-value=88 Score=24.73 Aligned_cols=27 Identities=4% Similarity=0.029 Sum_probs=23.4
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWR 28 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~ 28 (109)
|++++..|..||.+.|++|+.+++.|.
T Consensus 206 Lgv~~~as~~eIk~aYr~L~~~~HPDk 232 (267)
T PRK09430 206 LGVSESDDDQEIKRAYRKLMSEHHPDK 232 (267)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCcCC
Confidence 567777899999999999999998765
No 65
>PRK10721 hypothetical protein; Provisional
Probab=25.99 E-value=1e+02 Score=20.09 Aligned_cols=30 Identities=10% Similarity=0.184 Sum_probs=15.0
Q ss_pred HHHHHHHHhhCCCccCCCCCChhhHHHHHHHhh
Q psy7866 75 NFQTMVSDLTGLSVANASLLDEATAAAEAMSIC 107 (109)
Q Consensus 75 e~q~~l~eltGmd~~n~S~ydga~A~~ea~~ma 107 (109)
++.+|+++|-|+|- -+--..-...||+.||
T Consensus 31 DL~~wV~~L~~FdD---dp~~~~EkiLEAIQ~a 60 (66)
T PRK10721 31 DMHQWICELEDFDD---DPQASNEKILEAILLV 60 (66)
T ss_pred HHHHHHHhCcCcCC---CcccccHHHHHHHHHH
Confidence 35566666665554 2223334455555554
No 66
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.93 E-value=1.5e+02 Score=23.99 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=40.5
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCC--CCcccCCCCCcccchhhhHHHhcCCCccccCCC------------CCchhhhh
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIW--RSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTP------------YQPEIAQG 68 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~--~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhP------------yQpe~sQG 68 (109)
.||+..||.|+.+-+.+|.+....+ .-++|+- .|.+..-|.+.|.-.-.- .++|| +.|-+.+|
T Consensus 65 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP--~~i~~~~i~~~I~p~KDV-DGl~~~N~g~l~~~~~~~~PcTp~a 141 (287)
T PRK14173 65 VLPESTSQEELLELIARLNADPEVDGILVQLPLP--PHIDFQRVLEAIDPLKDV-DGFHPLNVGRLWMGGEALEPCTPAG 141 (287)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCC--CCCCHHHHHhccCccccc-cccChhhhHHHhcCCCCCCCCCHHH
Confidence 5898889999999998885533322 1234542 233333223333322222 33444 35667788
Q ss_pred HHHHHHHHH
Q psy7866 69 RLESLLNFQ 77 (109)
Q Consensus 69 ~Lq~l~e~q 77 (109)
.++.|-.|+
T Consensus 142 vi~lL~~~~ 150 (287)
T PRK14173 142 VVRLLKHYG 150 (287)
T ss_pred HHHHHHHcC
Confidence 888886654
No 67
>KOG0720|consensus
Probab=25.87 E-value=60 Score=28.51 Aligned_cols=31 Identities=10% Similarity=-0.032 Sum_probs=25.7
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCCccc
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRSYIG 32 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~f~g 32 (109)
|.||.-.|..++.|||+++|-.=..|.+..+
T Consensus 241 lGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~ 271 (490)
T KOG0720|consen 241 LGLPSDCSDADLKKNYRKKAMLVHPDKNMIP 271 (490)
T ss_pred cCCCCCCCHHHHHHHHHhhceEeCCCccCCh
Confidence 5788888999999999999987777877433
No 68
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=25.86 E-value=1.1e+02 Score=24.06 Aligned_cols=46 Identities=13% Similarity=0.023 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHhhcc-CCCCc--ccCCCCCcccchhhhHHHhcCCCc
Q psy7866 8 LGEHELLEEIQSIANKNE-IWRSY--IGLGYHNCLVPTVIQRNLFENPGW 54 (109)
Q Consensus 8 lsE~ev~rh~~~ls~~N~-~~~~f--~g~G~~~ky~P~vi~~~ia~~~~f 54 (109)
.|+.++++||+++++..- ..... +|.-+=....|.+ ..++++.|.+
T Consensus 110 ~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~-i~~L~~~pnv 158 (290)
T TIGR00683 110 FSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQ-FGELYKNPKV 158 (290)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHH-HHHHhcCCCE
Confidence 589999999999987652 11111 2321112566775 6888888877
No 69
>PRK14296 chaperone protein DnaJ; Provisional
Probab=25.86 E-value=87 Score=25.87 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=24.7
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|.++...|+.||.+-|.+||.+-+.|.+
T Consensus 10 Lgv~~~a~~~eik~ayrkla~~~HPD~n 37 (372)
T PRK14296 10 LGVSKTASEQEIRQAYRKLAKQYHPDLN 37 (372)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 6788888999999999999999887765
No 70
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.15 E-value=1.7e+02 Score=23.72 Aligned_cols=72 Identities=13% Similarity=0.092 Sum_probs=39.4
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCC--CCcccCCCCCcccchhhhHHHhcCCCccccCCC------------CCchhhhh
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIW--RSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTP------------YQPEIAQG 68 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~--~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhP------------yQpe~sQG 68 (109)
.||+..+|.|+.+.+.+|.+....+ .-++|+- .|....-|.+.|.=.-.- .++|| +-|-+.+|
T Consensus 68 ~l~~~~t~~el~~~I~~lN~D~~V~GIlvqlPlP--~~id~~~i~~~I~p~KDV-DGl~~~n~g~l~~~~~~~~PcTp~a 144 (284)
T PRK14193 68 DLPADATQEELNAVIDELNADPACTGYIVQLPLP--KHLDENAVLERIDPAKDA-DGLHPTNLGRLVLNEPAPLPCTPRG 144 (284)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCC--CCCCHHHHHhcCCcccCc-cCCChhhhhHHhCCCCCCCCCCHHH
Confidence 5898899999999998874433221 1234542 233333222222222211 33333 34567888
Q ss_pred HHHHHHHHH
Q psy7866 69 RLESLLNFQ 77 (109)
Q Consensus 69 ~Lq~l~e~q 77 (109)
.++.|-.|+
T Consensus 145 v~~ll~~~~ 153 (284)
T PRK14193 145 IVHLLRRYD 153 (284)
T ss_pred HHHHHHHhC
Confidence 888887663
No 71
>PRK14278 chaperone protein DnaJ; Provisional
Probab=24.95 E-value=95 Score=25.66 Aligned_cols=28 Identities=7% Similarity=-0.015 Sum_probs=24.6
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|.+|...|+.||.+-|.+||.+-+.|.+
T Consensus 9 Lgv~~~a~~~eik~ayr~la~~~hpD~~ 36 (378)
T PRK14278 9 LGVSRNASDAEIKRAYRKLARELHPDVN 36 (378)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 6788888999999999999999887764
No 72
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.89 E-value=1.9e+02 Score=23.66 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=43.9
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCCCC---cccCCCCCcccchhhhHHHhcCCCccccCCC------------CCchhhh
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIWRS---YIGLGYHNCLVPTVIQRNLFENPGWVTQYTP------------YQPEIAQ 67 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~~~---f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhP------------yQpe~sQ 67 (109)
.||+..||.|+.+.+.+|.+.... .+ ++|+- .|.+..-|.+.|.-.-.- .++|| +.|-+..
T Consensus 69 ~l~~~~t~~~l~~~I~~lN~D~~V-~GIlvqlPLP--~~i~~~~i~~~I~p~KDV-DGl~~~N~g~l~~~~~~~~PcTp~ 144 (301)
T PRK14194 69 RLPADTSQARLLALIAELNADPSV-NGILLQLPLP--AHIDEARVLQAINPLKDV-DGFHSENVGGLSQGRDVLTPCTPS 144 (301)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCCC-CeEEEeCCCC--CCCCHHHHHhccCchhcc-CccChhhhhHHhcCCCCCCCCcHH
Confidence 589989999999999887443322 33 33442 244443333333333222 33343 3455677
Q ss_pred hHHHHHHHHHHHHHHhhCCCc
Q psy7866 68 GRLESLLNFQTMVSDLTGLSV 88 (109)
Q Consensus 68 G~Lq~l~e~q~~l~eltGmd~ 88 (109)
|.++.|-.|.- ++.|-.+
T Consensus 145 aii~lL~~~~i---~l~Gk~V 162 (301)
T PRK14194 145 GCLRLLEDTCG---DLTGKHA 162 (301)
T ss_pred HHHHHHHHhCC---CCCCCEE
Confidence 88887776632 4445444
No 73
>PF10550 Toxin_36: Conantokin-G mollusc-toxin; InterPro: IPR005918 The conantokins are a family of neuroactive peptides found in the venoms of fish-hunting cone snails. They possess a relatively high number of residues (4-5) of the non-standard amino acid gamma-carboxyglutamic acid (Gla), which is generated by the post-translational modification of glutamate (Glu) residues. Conantokins are the only naturally produced peptides known to be N-methyl-D-aspartate (NMDA) receptor antagonists and show therapeutic promise in treating conditions associated with NMDA receptor dysfunction. In animal models they have exhibited anticonvulsant and anti-Parkinsonian properties and have provided neuroprotection within therapeutically acceptable times following transient focal brain ischemia [, , , ]. Upon binding of Ca2+ to Gla, conantokin undergoes a conformational transition from a distorted curvilinear 3(10) helix to a linear alpha-helix. The binding of Ca2+ to conantokin leads to the exposure of a hydrophobic region on the opposite face of the helix []. Conantokins share relatively few sequence elements, which include include sequence identity at the first four residues, homologous positioning of the two most C-terminal Gla residues, and an Arg preceding the most C-terminal Gla []. The conantokin family is currently known to include: Conotoxin G from Conus geographus (Geography cone) (Nubecula geographus). Conantokin-L from Conus lynceus (Lynceus cone). Conantokin-R from Conus radiatus (Rayed cone). Conantokin-T from Conus tulipa (Fish-hunting cone snail) (Tulip cone). ; PDB: 1ONT_A.
Probab=24.64 E-value=64 Score=15.17 Aligned_cols=9 Identities=22% Similarity=0.486 Sum_probs=7.0
Q ss_pred HHHHHHHHh
Q psy7866 75 NFQTMVSDL 83 (109)
Q Consensus 75 e~q~~l~el 83 (109)
|+|.|+.+|
T Consensus 4 e~~km~~~l 12 (15)
T PF10550_consen 4 EVAKMAAEL 12 (15)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 678888776
No 74
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=24.43 E-value=99 Score=24.08 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHhhccCCCCcc--cCCCCCcccchhhhHHHhcCCCc
Q psy7866 8 LGEHELLEEIQSIANKNEIWRSYI--GLGYHNCLVPTVIQRNLFENPGW 54 (109)
Q Consensus 8 lsE~ev~rh~~~ls~~N~~~~~f~--g~G~~~ky~P~vi~~~ia~~~~f 54 (109)
.|+.++++||+++++.-....-+| |.-+=..+.|.+ .+++++.|.+
T Consensus 107 ~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~-l~~L~~~~~v 154 (285)
T TIGR00674 107 PTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPET-VKRLAEEPNI 154 (285)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHH-HHHHHcCCCE
Confidence 489999999999998752211122 321112566775 7899888875
No 75
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=24.30 E-value=1.3e+02 Score=23.43 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHhhccCCCCcc--cCCCCCcccchhhhHHHhcCCCc
Q psy7866 8 LGEHELLEEIQSIANKNEIWRSYI--GLGYHNCLVPTVIQRNLFENPGW 54 (109)
Q Consensus 8 lsE~ev~rh~~~ls~~N~~~~~f~--g~G~~~ky~P~vi~~~ia~~~~f 54 (109)
.|+.++++||+++++.-....-+| |.-+=....|.. .+++++.|.+
T Consensus 110 ~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~-~~~L~~~p~v 157 (292)
T PRK03170 110 PTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPET-VARLAEHPNI 157 (292)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHH-HHHHHcCCCE
Confidence 489999999999998642111122 321112466775 6888877766
No 76
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.81 E-value=1.8e+02 Score=23.62 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=18.9
Q ss_pred CCCcCCCHHHHHHHHHHHHhhcc
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNE 25 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~ 25 (109)
.||+..||.|+.+.+.+|.+...
T Consensus 68 ~l~~~~~~~~l~~~I~~LN~D~~ 90 (288)
T PRK14171 68 NLSTTIHTNDLISKINELNLDNE 90 (288)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCC
Confidence 58998999999999999855443
No 77
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=23.79 E-value=4.6e+02 Score=22.37 Aligned_cols=92 Identities=13% Similarity=0.093 Sum_probs=56.3
Q ss_pred CCCc-CCCHHHHHHHHHHHHhhccC-CCCcccCCCCCcccchhhhHHHhcCCCccccCC---------CCCchh--hhhH
Q psy7866 3 NFDM-YLGEHELLEEIQSIANKNEI-WRSYIGLGYHNCLVPTVIQRNLFENPGWVTQYT---------PYQPEI--AQGR 69 (109)
Q Consensus 3 ~LPe-~lsE~ev~rh~~~ls~~N~~-~~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yh---------PyQpe~--sQG~ 69 (109)
.||+ ++++..+..-+.+||..... ...-+|.|=-.-.+ .-.|.+|.-| .=|| --||.. |...
T Consensus 29 ~~p~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~gere~rv----~~~~~~~~~~-~~~hgigr~~~l~~~q~ka~gss~~ 103 (444)
T TIGR03531 29 KIPEEGWDDETIELFLHELSVMDTNNFPNNVGVGEREGRV----FSKLVARRHY-RFCHGIGRSGDLVAPQPKAAGSSLL 103 (444)
T ss_pred cCCccCCCHHHHHHHHHHHhcCCcCCCccccCcCccccee----echhhhhccc-ceecCCCCcccccccCccccCccHH
Confidence 3564 67999999999999976543 33345666322111 1222222222 1233 368873 6778
Q ss_pred HHHHHHHHHHHHHhhCCCcc-CCCCCChhhH
Q psy7866 70 LESLLNFQTMVSDLTGLSVA-NASLLDEATA 99 (109)
Q Consensus 70 Lq~l~e~q~~l~eltGmd~~-n~S~ydga~A 99 (109)
..+.-+|+..+++++|.+.. .+-+-.++|+
T Consensus 104 ~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg 134 (444)
T TIGR03531 104 YKLTNKLVKDFLKLLGLRSIKSAFVVPLATG 134 (444)
T ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCHHH
Confidence 89999999999999999721 1334446664
No 78
>PRK10767 chaperone protein DnaJ; Provisional
Probab=23.67 E-value=1.1e+02 Score=25.14 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=24.5
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|++|...|..||.+.|.+||.+.+.|.+
T Consensus 10 Lgv~~~as~~eik~ayr~la~~~HPD~~ 37 (371)
T PRK10767 10 LGVSRNASEDEIKKAYRKLAMKYHPDRN 37 (371)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 6788888999999999999999887754
No 79
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.11 E-value=2.1e+02 Score=23.36 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=18.0
Q ss_pred CCCcCCCHHHHHHHHHHHHhhc
Q psy7866 3 NFDMYLGEHELLEEIQSIANKN 24 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N 24 (109)
.||+..||.|+.+-+.+|.+..
T Consensus 69 ~l~~~~t~~el~~~I~~lN~D~ 90 (297)
T PRK14168 69 NQSVDITEEELLALIDKYNNDD 90 (297)
T ss_pred ECCCCCCHHHHHHHHHHHhCCC
Confidence 5899899999999988885533
No 80
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.98 E-value=2.2e+02 Score=23.12 Aligned_cols=71 Identities=11% Similarity=0.211 Sum_probs=40.2
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCCCC---cccCCCCCcccchhhhHHHhcCCCccccCCC------------CCchhhh
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIWRS---YIGLGYHNCLVPTVIQRNLFENPGWVTQYTP------------YQPEIAQ 67 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~~~---f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhP------------yQpe~sQ 67 (109)
.||+..||.|+.+.+.+|.+... ..+ ++|+- .|.+..-|.+.|.-.-.- .+.|| |.|-+..
T Consensus 67 ~l~~~~~~~el~~~I~~lN~D~~-V~GIivqlPlP--~~i~~~~i~~~I~p~KDV-DGl~p~N~g~l~~~~~~~~PcTp~ 142 (284)
T PRK14170 67 ELPENVTEEKLLSVVEELNEDKT-IHGILVQLPLP--EHISEEKVIDTISYDKDV-DGFHPVNVGNLFIGKDSFVPCTPA 142 (284)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCC-CCeEEEecCCC--CCCCHHHHHhccCcccCc-ccCChhhhhHHhCCCCCCCCCCHH
Confidence 58988999999999888744332 233 33442 244443333433333222 33444 4566778
Q ss_pred hHHHHHHHHH
Q psy7866 68 GRLESLLNFQ 77 (109)
Q Consensus 68 G~Lq~l~e~q 77 (109)
|.++.|-.|.
T Consensus 143 avi~lL~~~~ 152 (284)
T PRK14170 143 GIIELIKSTG 152 (284)
T ss_pred HHHHHHHHhC
Confidence 8888876553
No 81
>TIGR03412 iscX_yfhJ FeS assembly protein IscX. Members of this protein family are YfhJ, a protein of the ISC system for iron-sulfur cluster assembly. Other genes in the system include iscSUA, hscBA, and fdx.
Probab=22.76 E-value=1.3e+02 Score=19.40 Aligned_cols=9 Identities=33% Similarity=0.745 Sum_probs=4.3
Q ss_pred HHHhcCCCc
Q psy7866 46 RNLFENPGW 54 (109)
Q Consensus 46 ~~ia~~~~f 54 (109)
+-|.+.|+|
T Consensus 31 ~wV~~L~~F 39 (63)
T TIGR03412 31 QWVLELPGF 39 (63)
T ss_pred HHHHhCcCc
Confidence 444444544
No 82
>smart00362 RRM_2 RNA recognition motif.
Probab=22.75 E-value=94 Score=17.10 Aligned_cols=18 Identities=22% Similarity=0.229 Sum_probs=15.2
Q ss_pred CCCcCCCHHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQSI 20 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~l 20 (109)
+||...++.|+.+++.+.
T Consensus 6 ~l~~~~~~~~l~~~~~~~ 23 (72)
T smart00362 6 NLPPDVTEEDLKELFSKF 23 (72)
T ss_pred CCCCcCCHHHHHHHHHhc
Confidence 688889999999999653
No 83
>PRK14285 chaperone protein DnaJ; Provisional
Probab=22.54 E-value=1.2e+02 Score=25.02 Aligned_cols=28 Identities=14% Similarity=0.062 Sum_probs=24.7
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|.++...|..||.+.|.+|+.+-+.|.+
T Consensus 9 Lgv~~~a~~~eIk~ayr~la~~~HPD~~ 36 (365)
T PRK14285 9 LGLSKGASKDEIKKAYRKIAIKYHPDKN 36 (365)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 6788888999999999999999887764
No 84
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=22.27 E-value=1.2e+02 Score=25.79 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=24.6
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|.++..-|+.||.+.|++||.+.+.|.+
T Consensus 34 LGV~~~As~~eIKkAYrkla~k~HPDk~ 61 (421)
T PTZ00037 34 LNLSKDCTTSEIKKAYRKLAIKHHPDKG 61 (421)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 6677778999999999999999988764
No 85
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=22.20 E-value=70 Score=25.22 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHhhccC-CCC--cccCC-CCCcccch
Q psy7866 7 YLGEHELLEEIQSIANKNEI-WRS--YIGLG-YHNCLVPT 42 (109)
Q Consensus 7 ~lsE~ev~rh~~~ls~~N~~-~~~--f~g~G-~~~ky~P~ 42 (109)
+++-.|+.||+-+ +|.. +.. ..+ | .++||+|+
T Consensus 36 g~TGae~Ar~iL~---~~gl~~V~Ve~~~-G~LtDHYdP~ 71 (222)
T PF04298_consen 36 GMTGAEVARHILD---RNGLSDVRVERVP-GELTDHYDPR 71 (222)
T ss_pred CCCHHHHHHHHHH---HCCCCCeeEEEeC-CCCCCCcCCC
Confidence 5789999999844 3432 332 234 5 58999998
No 86
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.19 E-value=2.4e+02 Score=22.86 Aligned_cols=72 Identities=13% Similarity=0.035 Sum_probs=39.2
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCC--CCcccCCCCCcccchhhhHHHhcCCCccccCC------------CCCchhhhh
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIW--RSYIGLGYHNCLVPTVIQRNLFENPGWVTQYT------------PYQPEIAQG 68 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~--~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yh------------PyQpe~sQG 68 (109)
.||+..||.|+.+-+.+|.+....+ .-++|+. .|.+.+-|.+.|.-.-.- .++| .+.|-+.+|
T Consensus 69 ~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPLp--~~i~~~~i~~~I~p~KDV-DGl~~~n~g~l~~g~~~~~PcTp~a 145 (284)
T PRK14177 69 RLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVP--SQIDERAAFDRIALEKDV-DGVTTLSFGKLSMGVETYLPCTPYG 145 (284)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCC--CCCCHHHHHhccCccccc-ccCChhhHHHHHcCCCCCCCCCHHH
Confidence 5899889999999998885533322 2234543 133333222332222111 2222 244566788
Q ss_pred HHHHHHHHH
Q psy7866 69 RLESLLNFQ 77 (109)
Q Consensus 69 ~Lq~l~e~q 77 (109)
.++.|-.|+
T Consensus 146 vi~ll~~y~ 154 (284)
T PRK14177 146 MVLLLKEYG 154 (284)
T ss_pred HHHHHHHhC
Confidence 888776663
No 87
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.59 E-value=2e+02 Score=23.29 Aligned_cols=71 Identities=14% Similarity=0.344 Sum_probs=38.8
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCCCC---cccCCCCCcccchhhhHHHhcCCCccccCCC-------------CCchhh
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIWRS---YIGLGYHNCLVPTVIQRNLFENPGWVTQYTP-------------YQPEIA 66 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~~~---f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhP-------------yQpe~s 66 (109)
.||+..||.|+.+.+.+|.+.... .+ ++|+- .|.+..-|.+.|.-.-.- .+.|| |.|-+.
T Consensus 66 ~l~~~~t~~~l~~~I~~lN~D~~V-~GIivq~PLP--~~i~~~~i~~~I~p~KDV-DGl~~~N~g~l~~g~~~~~~PcTp 141 (282)
T PRK14166 66 HLNENTTQNELLALINTLNHDDSV-HGILVQLPLP--DHICKDLILESIISSKDV-DGFHPINVGYLNLGLESGFLPCTP 141 (282)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCC-CEEEEeCCCC--CCCCHHHHHhccCcccCc-ccCChhhhHHHhcCCCCCCcCCCH
Confidence 588889999999999888543322 23 33442 244443333333222211 22333 345567
Q ss_pred hhHHHHHHHHH
Q psy7866 67 QGRLESLLNFQ 77 (109)
Q Consensus 67 QG~Lq~l~e~q 77 (109)
+|.++.|-.|+
T Consensus 142 ~avi~lL~~y~ 152 (282)
T PRK14166 142 LGVMKLLKAYE 152 (282)
T ss_pred HHHHHHHHHhC
Confidence 78887776653
No 88
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=21.39 E-value=57 Score=25.56 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=16.2
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHhhCCCccC
Q psy7866 60 PYQPEIAQGRLESLLNFQTMVSDLTGLSVAN 90 (109)
Q Consensus 60 PyQpe~sQG~Lq~l~e~q~~l~eltGmd~~n 90 (109)
+|++|. -+++|.|+||||+=-
T Consensus 111 ~y~ae~----------ae~Ll~el~G~~lPl 131 (206)
T COG3017 111 RYQAED----------AEELLQELTGMDLPL 131 (206)
T ss_pred eeeccC----------HHHHHHHhhCCcccH
Confidence 577766 568999999999743
No 89
>PRK14297 chaperone protein DnaJ; Provisional
Probab=21.37 E-value=1.2e+02 Score=25.06 Aligned_cols=28 Identities=11% Similarity=0.112 Sum_probs=24.4
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|+++...|+.||.+.|.+|+.+-+.|.+
T Consensus 10 Lgv~~~a~~~~ik~ayr~la~~~HPD~~ 37 (380)
T PRK14297 10 LGLEKGASDDEIKKAFRKLAIKYHPDKN 37 (380)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 6788888999999999999999877654
No 90
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=20.99 E-value=1.3e+02 Score=23.19 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHhhccCCCCc--ccCCCCCcccchhhhHHHhcCCCc
Q psy7866 8 LGEHELLEEIQSIANKNEIWRSY--IGLGYHNCLVPTVIQRNLFENPGW 54 (109)
Q Consensus 8 lsE~ev~rh~~~ls~~N~~~~~f--~g~G~~~ky~P~vi~~~ia~~~~f 54 (109)
.++.++++||+++++..-...-+ +|.-+-..+.|.. .++|++.|.+
T Consensus 109 ~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~-~~~L~~~p~v 156 (284)
T cd00950 109 PSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPET-VLRLAEHPNI 156 (284)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHH-HHHHhcCCCE
Confidence 48999999999999973211111 2321212455775 6888888876
No 91
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.91 E-value=2.5e+02 Score=22.90 Aligned_cols=72 Identities=11% Similarity=0.059 Sum_probs=39.2
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCC--CCcccCCCCCcccchhhhHHHhcCCCccccCCC------------CCchhhhh
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIW--RSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTP------------YQPEIAQG 68 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~--~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhP------------yQpe~sQG 68 (109)
.||+..||.|+.+-+.+|.+....+ .-++|+. .|.+..-|.+.|.-.-.- .++|| |.|-+..|
T Consensus 68 ~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PLP--~~i~~~~i~~~I~p~KDV-DGl~~~n~g~l~~~~~~~~PcTp~a 144 (297)
T PRK14186 68 HLPADTSQAEVEALIAQLNQDERVDGILLQLPLP--KHLDEVPLLHAIDPDKDA-DGLHPLNLGRLVKGEPGLRSCTPAG 144 (297)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCC--CCCCHHHHHhccCcccCc-ccCChhhHHHHhCCCCCCCCCCHHH
Confidence 5888899999999998885544322 1234542 133322222333222111 22332 34566788
Q ss_pred HHHHHHHHH
Q psy7866 69 RLESLLNFQ 77 (109)
Q Consensus 69 ~Lq~l~e~q 77 (109)
.++.|-.|+
T Consensus 145 ii~lL~~~~ 153 (297)
T PRK14186 145 VMRLLRSQQ 153 (297)
T ss_pred HHHHHHHhC
Confidence 888887664
No 92
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.71 E-value=2.3e+02 Score=22.94 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=17.9
Q ss_pred CCCcCCCHHHHHHHHHHHHhhc
Q psy7866 3 NFDMYLGEHELLEEIQSIANKN 24 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N 24 (109)
.||+..||.|+.+.+.+|.+..
T Consensus 69 ~l~~~~s~~el~~~I~~lN~d~ 90 (285)
T PRK10792 69 DLPETTSEAELLALIDELNADP 90 (285)
T ss_pred ECCCCCCHHHHHHHHHHHhCCC
Confidence 5898899999999998885533
No 93
>KOG3442|consensus
Probab=20.49 E-value=1.4e+02 Score=21.83 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=22.2
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWR 28 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~ 28 (109)
|++-+.++..||.+||..|=+-|-...
T Consensus 65 LnV~~~ln~eei~k~yehLFevNdksk 91 (132)
T KOG3442|consen 65 LNVKEPLNREEIEKRYEHLFEVNDKSK 91 (132)
T ss_pred hCCCCCCCHHHHHHHHHHHHhccCccc
Confidence 567777999999999999988886443
No 94
>KOG3379|consensus
Probab=20.35 E-value=1.3e+02 Score=22.50 Aligned_cols=38 Identities=8% Similarity=0.092 Sum_probs=32.5
Q ss_pred CchhhhhHHHHHHHHHHHHHHhhCCCccCCCCCChhhH
Q psy7866 62 QPEIAQGRLESLLNFQTMVSDLTGLSVANASLLDEATA 99 (109)
Q Consensus 62 Qpe~sQG~Lq~l~e~q~~l~eltGmd~~n~S~ydga~A 99 (109)
.++.++-.....--.|+.|.++..-+..|.+++||..|
T Consensus 55 t~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~A 92 (150)
T KOG3379|consen 55 TAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEA 92 (150)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcccceEEEecccccc
Confidence 34567778888888999999999999999999999876
No 95
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=20.34 E-value=1.2e+02 Score=23.01 Aligned_cols=57 Identities=18% Similarity=0.275 Sum_probs=39.0
Q ss_pred CcccCCCCCcccchhhhHHHhcCCCccccCCCCCchhhhhHHHHHHHHHHHHHHhhCCCc
Q psy7866 29 SYIGLGYHNCLVPTVIQRNLFENPGWVTQYTPYQPEIAQGRLESLLNFQTMVSDLTGLSV 88 (109)
Q Consensus 29 ~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhPyQpe~sQG~Lq~l~e~q~~l~eltGmd~ 88 (109)
.|+|+||. |.|..+...+...+++ ..-+=.--.+.+-+|+.+..+.+.+.+-.|.+.
T Consensus 3 ~iIGaGS~--~~~~~l~~~l~~~~~l-~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~ 59 (183)
T PF02056_consen 3 TIIGAGST--YFPLLLLGDLLRTEEL-SGSEIVLMDIDEERLEIVERLARRMVEEAGADL 59 (183)
T ss_dssp EEETTTSC--CHHHHHHHHHHCTTTS-TEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSS
T ss_pred EEECCchH--hhHHHHHHHHhcCccC-CCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCe
Confidence 47899984 5666556666666666 211111113578999999999999999888776
No 96
>PRK14288 chaperone protein DnaJ; Provisional
Probab=20.29 E-value=1.4e+02 Score=24.60 Aligned_cols=28 Identities=11% Similarity=0.054 Sum_probs=24.7
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|.++..-|+.||.+-|.+||.+-+.|.+
T Consensus 9 Lgv~~~As~~eIkkayrkla~k~HPD~~ 36 (369)
T PRK14288 9 LEVEKHSNQETIKKSYRKLALKYHPDRN 36 (369)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 6778888999999999999999987764
No 97
>KOG3242|consensus
Probab=20.20 E-value=2.3e+02 Score=22.15 Aligned_cols=37 Identities=11% Similarity=0.024 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHhhccC-CCCcccCCC-CC------cccchhh
Q psy7866 8 LGEHELLEEIQSIANKNEI-WRSYIGLGY-HN------CLVPTVI 44 (109)
Q Consensus 8 lsE~ev~rh~~~ls~~N~~-~~~f~g~G~-~~------ky~P~vi 44 (109)
++..|+-..+-..-+++.. ..+.+++.+ |+ ||.|+++
T Consensus 100 ~tl~~aEnevl~yikk~ip~~~~~laGNSV~~DrlFl~k~mPk~~ 144 (208)
T KOG3242|consen 100 ITLADAENEVLEYIKKHIPKGKCPLAGNSVYMDRLFLKKYMPKLI 144 (208)
T ss_pred ccHHHHHHHHHHHHHHhCCCCCCCccCcchhhHHHHHHHHhHHHH
Confidence 3444444444444466654 344554444 76 9999964
No 98
>PRK14292 chaperone protein DnaJ; Provisional
Probab=20.03 E-value=1.4e+02 Score=24.37 Aligned_cols=28 Identities=14% Similarity=0.042 Sum_probs=24.3
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|.++...|+.||.+-|.+|+.+.+.|.+
T Consensus 8 Lgv~~~a~~~~ik~ayr~l~~~~hpD~~ 35 (371)
T PRK14292 8 LGVSRTASADEIKSAYRKLALKYHPDRN 35 (371)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 5678778999999999999999887764
Done!