Query psy7866
Match_columns 109
No_of_seqs 114 out of 1055
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 20:50:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7866.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7866hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wyu_A Glycine dehydrogenase ( 99.8 6.6E-21 2.3E-25 151.0 10.2 106 2-108 39-145 (438)
2 1wyu_B Glycine dehydrogenase s 99.6 1.2E-15 4E-20 122.9 11.6 95 2-103 40-137 (474)
3 2jis_A Cysteine sulfinic acid 98.0 4.4E-06 1.5E-10 67.6 5.0 96 2-104 80-181 (515)
4 3mc6_A Sphingosine-1-phosphate 98.0 1.3E-05 4.3E-10 63.9 7.1 104 3-108 37-146 (497)
5 2dgk_A GAD-beta, GADB, glutama 97.9 8.4E-05 2.9E-09 58.7 9.4 96 2-106 16-121 (452)
6 2okj_A Glutamate decarboxylase 96.6 0.0022 7.7E-08 51.3 4.6 97 3-106 65-169 (504)
7 3vp6_A Glutamate decarboxylase 95.9 0.0086 3E-07 48.7 4.8 99 2-106 67-172 (511)
8 1js3_A DDC;, DOPA decarboxylas 95.8 0.0083 2.8E-07 47.6 4.1 88 4-98 46-149 (486)
9 3f9t_A TDC, L-tyrosine decarbo 95.7 0.087 3E-06 39.1 9.3 101 1-107 2-105 (397)
10 3mad_A Sphingosine-1-phosphate 95.7 0.015 5E-07 46.6 5.2 98 7-108 75-180 (514)
11 1c4k_A Protein (ornithine deca 92.0 0.015 5.2E-07 50.3 -1.7 78 29-108 116-209 (730)
12 2z67_A O-phosphoseryl-tRNA(SEC 91.8 0.82 2.8E-05 36.0 8.3 88 3-99 57-160 (456)
13 2guz_B Mitochondrial import in 76.3 2.5 8.7E-05 26.0 3.2 28 2-29 10-40 (65)
14 2guz_A Mitochondrial import in 74.0 2.9 0.0001 25.4 3.0 28 2-29 20-48 (71)
15 3hbx_A GAD 1, glutamate decarb 63.2 42 0.0014 26.7 8.5 79 4-87 32-111 (502)
16 2ej7_A HCG3 gene; HCG3 protein 60.1 12 0.00039 22.8 3.8 28 2-29 15-42 (82)
17 1bq0_A DNAJ, HSP40; chaperone, 58.1 13 0.00043 23.9 3.9 28 2-29 9-36 (103)
18 2dn9_A DNAJ homolog subfamily 58.1 10 0.00035 22.9 3.2 28 2-29 13-40 (79)
19 2och_A Hypothetical protein DN 57.2 11 0.00037 22.6 3.2 28 2-29 14-41 (73)
20 2ctp_A DNAJ homolog subfamily 57.2 9.9 0.00034 23.0 3.1 28 2-29 13-40 (78)
21 2ctr_A DNAJ homolog subfamily 56.4 11 0.00037 23.5 3.2 28 2-29 13-40 (88)
22 2qma_A Diaminobutyrate-pyruvat 54.6 55 0.0019 25.6 7.8 99 4-106 73-176 (497)
23 1hdj_A Human HSP40, HDJ-1; mol 54.1 13 0.00043 22.4 3.2 28 2-29 9-36 (77)
24 2ys8_A RAB-related GTP-binding 53.9 11 0.00038 23.7 3.0 28 2-29 33-60 (90)
25 1rbl_M Ribulose 1,5 bisphospha 53.2 20 0.00068 24.3 4.3 63 4-84 17-82 (109)
26 2cug_A Mkiaa0962 protein; DNAJ 52.9 13 0.00046 23.1 3.2 28 2-29 23-50 (88)
27 1faf_A Large T antigen; J doma 51.9 11 0.00037 23.4 2.6 28 2-29 17-46 (79)
28 4gwp_A Mediator of RNA polymer 51.1 8.2 0.00028 26.7 2.1 24 61-84 1-24 (115)
29 2yua_A Williams-beuren syndrom 49.7 16 0.00054 23.3 3.2 28 2-29 23-50 (99)
30 2lgw_A DNAJ homolog subfamily 49.6 20 0.00069 23.0 3.8 28 2-29 8-35 (99)
31 2o37_A Protein SIS1; HSP40, J- 48.8 15 0.00052 23.0 3.0 28 2-29 14-41 (92)
32 3a9z_A Selenocysteine lyase; P 48.3 25 0.00086 26.4 4.7 43 65-107 55-97 (432)
33 1svd_M Ribulose bisphosphate c 46.3 23 0.00079 24.0 3.7 63 4-84 19-84 (110)
34 2ctq_A DNAJ homolog subfamily 44.8 26 0.0009 22.7 3.8 28 2-29 26-53 (112)
35 3zxw_B Ribulose bisphosphate c 44.3 27 0.00093 24.0 3.9 65 3-85 15-82 (118)
36 2ctw_A DNAJ homolog subfamily 43.1 23 0.00078 23.0 3.3 28 2-29 23-50 (109)
37 2dmx_A DNAJ homolog subfamily 42.5 15 0.00051 22.9 2.2 28 2-29 15-42 (92)
38 1wjz_A 1700030A21RIK protein; 42.5 17 0.00059 22.5 2.5 28 2-29 22-49 (94)
39 2lxi_A RNA-binding protein 10; 42.0 19 0.00066 21.9 2.7 18 3-20 8-25 (91)
40 1iqt_A AUF1, heterogeneous nuc 41.1 22 0.00075 20.2 2.7 18 3-20 6-23 (75)
41 1v54_E Cytochrome C oxidase po 40.2 21 0.00072 24.4 2.8 31 73-109 26-56 (109)
42 3lvm_A Cysteine desulfurase; s 39.0 87 0.003 23.2 6.4 70 37-107 32-104 (423)
43 2mss_A Protein (musashi1); RNA 37.5 21 0.00071 20.4 2.2 17 3-19 6-22 (75)
44 1elu_A L-cysteine/L-cystine C- 37.1 35 0.0012 24.8 3.8 39 70-108 58-96 (390)
45 2hzc_A Splicing factor U2AF 65 37.1 26 0.00088 20.5 2.6 19 3-21 13-31 (87)
46 2l6l_A DNAJ homolog subfamily 35.3 30 0.001 23.6 3.0 28 2-29 16-43 (155)
47 2cqh_A IGF-II mRNA-binding pro 32.6 34 0.0012 20.4 2.7 17 3-19 15-31 (93)
48 4hvk_A Probable cysteine desul 32.4 45 0.0015 24.0 3.7 43 65-107 37-79 (382)
49 3apq_A DNAJ homolog subfamily 32.0 27 0.00091 24.1 2.3 28 2-29 8-35 (210)
50 2c2x_A Methylenetetrahydrofola 31.9 59 0.002 25.1 4.5 71 3-76 68-152 (281)
51 2dnp_A RNA-binding protein 14; 31.7 38 0.0013 20.1 2.8 18 3-20 16-33 (90)
52 1why_A Hypothetical protein ri 30.4 30 0.001 20.8 2.2 17 3-19 24-40 (97)
53 4fxv_A ELAV-like protein 1; RN 30.1 29 0.001 21.5 2.1 17 3-19 26-42 (99)
54 2ytc_A PRE-mRNA-splicing facto 29.8 31 0.0011 20.1 2.1 17 3-19 19-35 (85)
55 3ngx_A Bifunctional protein fo 29.3 46 0.0016 25.7 3.5 79 3-89 62-154 (276)
56 2div_A TRNA selenocysteine ass 28.8 41 0.0014 20.2 2.6 18 3-20 16-33 (99)
57 2cqi_A Nucleolysin TIAR; RNA r 28.1 47 0.0016 20.1 2.8 18 3-20 22-39 (103)
58 1x5s_A Cold-inducible RNA-bind 28.1 47 0.0016 20.0 2.8 18 3-20 19-36 (102)
59 2qsa_A DNAJ homolog DNJ-2; J-d 28.0 43 0.0015 21.4 2.7 28 2-29 21-49 (109)
60 2o34_A Hypothetical protein; s 27.8 44 0.0015 25.4 3.1 31 45-75 61-92 (250)
61 2dis_A Unnamed protein product 27.4 48 0.0017 20.2 2.8 18 3-20 15-32 (109)
62 3s5o_A 4-hydroxy-2-oxoglutarat 27.3 37 0.0013 25.9 2.6 46 8-54 125-172 (307)
63 4fc9_B Uncharacterized protein 27.2 42 0.0014 24.9 2.7 18 8-25 110-127 (208)
64 2dgp_A Bruno-like 4, RNA bindi 27.1 46 0.0016 20.2 2.6 18 3-20 20-37 (106)
65 2hvz_A Splicing factor, argini 27.0 47 0.0016 20.0 2.6 18 3-20 7-24 (101)
66 2y69_E Cytochrome C oxidase su 26.9 42 0.0014 24.1 2.6 30 73-108 69-98 (152)
67 1iur_A KIAA0730 protein; DNAJ 26.7 23 0.00078 22.5 1.1 27 3-29 23-49 (88)
68 2cpd_A Apobec-1 stimulating pr 26.7 37 0.0013 20.5 2.1 17 3-19 22-38 (99)
69 2dgt_A RNA-binding protein 30; 26.7 38 0.0013 20.2 2.1 17 3-19 17-33 (92)
70 2dhg_A TRNA selenocysteine ass 26.7 48 0.0016 20.0 2.7 17 3-19 16-32 (104)
71 3bc8_A O-phosphoseryl-tRNA(SEC 26.5 2.6E+02 0.0088 22.7 9.0 97 4-107 23-135 (450)
72 2dgu_A Heterogeneous nuclear r 26.5 53 0.0018 20.0 2.8 18 3-20 18-35 (103)
73 4eb5_A Probable cysteine desul 26.5 50 0.0017 24.0 3.1 42 66-107 38-79 (382)
74 2dgv_A HnRNP M, heterogeneous 26.4 38 0.0013 20.0 2.1 17 3-19 15-31 (92)
75 1uaw_A Mouse-musashi-1; RNP-ty 26.1 31 0.0011 19.6 1.6 17 3-19 7-23 (77)
76 3eb2_A Putative dihydrodipicol 26.1 87 0.003 23.6 4.5 46 8-54 113-160 (300)
77 3bs9_A Nucleolysin TIA-1 isofo 26.0 34 0.0012 19.9 1.8 17 3-19 13-29 (87)
78 3md1_A Nuclear and cytoplasmic 26.0 45 0.0015 19.2 2.3 17 3-19 8-24 (83)
79 1x5t_A Splicing factor 3B subu 25.9 40 0.0014 20.0 2.1 17 3-19 12-28 (96)
80 4a8x_A RNA-binding protein wit 25.8 41 0.0014 19.5 2.1 17 3-19 11-27 (88)
81 2cqq_A RSGI RUH-037, DNAJ homo 25.7 85 0.0029 19.2 3.6 26 8-33 43-68 (72)
82 2e5j_A Methenyltetrahydrofolat 25.5 53 0.0018 19.8 2.7 17 3-19 26-42 (97)
83 1fj7_A Nucleolin RBD1, protein 25.5 56 0.0019 19.7 2.8 20 3-22 24-43 (101)
84 3fkr_A L-2-keto-3-deoxyarabona 25.4 75 0.0026 24.2 4.0 46 8-55 120-168 (309)
85 2cpf_A RNA binding motif prote 25.3 41 0.0014 20.1 2.1 17 3-19 12-28 (98)
86 2dh8_A DAZ-associated protein 25.2 41 0.0014 20.5 2.1 17 3-19 23-39 (105)
87 3s7r_A Heterogeneous nuclear r 25.0 47 0.0016 19.4 2.3 17 3-19 18-34 (87)
88 2dnq_A RNA-binding protein 4B; 24.7 44 0.0015 19.8 2.1 17 3-19 15-31 (90)
89 1gh6_A Large T antigen; tumor 24.2 39 0.0013 22.4 2.0 28 2-29 14-43 (114)
90 2cqd_A RNA-binding region cont 24.1 45 0.0015 20.7 2.2 17 3-19 24-40 (116)
91 4b4u_A Bifunctional protein fo 24.1 85 0.0029 24.6 4.1 72 3-77 89-174 (303)
92 2cqc_A Arginine/serine-rich sp 24.0 46 0.0016 19.6 2.1 17 3-19 22-38 (95)
93 1b0a_A Protein (fold bifunctio 24.0 90 0.0031 24.2 4.3 21 3-23 69-89 (288)
94 1x4g_A Nucleolysin TIAR; struc 24.0 58 0.002 20.0 2.7 18 3-20 32-49 (109)
95 3vax_A Putative uncharacterize 24.0 91 0.0031 22.8 4.1 43 66-108 58-100 (400)
96 3ucg_A Polyadenylate-binding p 23.7 51 0.0017 19.2 2.3 17 3-19 13-29 (89)
97 1x4a_A Splicing factor, argini 23.1 40 0.0014 20.7 1.8 17 3-19 29-45 (109)
98 1x4h_A RNA-binding protein 28; 23.0 47 0.0016 20.3 2.1 17 3-19 22-38 (111)
99 1whw_A Hypothetical protein ri 22.8 50 0.0017 19.8 2.1 17 3-19 15-31 (99)
100 1fjc_A Nucleolin RBD2, protein 22.7 55 0.0019 19.5 2.3 17 3-19 23-39 (96)
101 3mdf_A Peptidyl-prolyl CIS-tra 22.5 57 0.002 18.8 2.3 17 3-19 14-30 (85)
102 2do4_A Squamous cell carcinoma 22.4 54 0.0019 19.7 2.3 17 3-19 24-40 (100)
103 2la4_A Nuclear and cytoplasmic 22.3 50 0.0017 19.9 2.1 17 3-19 34-50 (101)
104 2cph_A RNA binding motif prote 22.2 50 0.0017 20.0 2.1 17 3-19 22-38 (107)
105 2x1f_A MRNA 3'-END-processing 22.1 51 0.0017 19.7 2.1 17 3-19 9-25 (96)
106 1x5u_A Splicing factor 3B subu 22.1 52 0.0018 19.9 2.1 18 3-20 22-39 (105)
107 1wf0_A TDP-43, TAR DNA-binding 22.0 40 0.0014 19.9 1.5 17 3-19 12-28 (88)
108 3p5t_L Cleavage and polyadenyl 22.0 52 0.0018 19.5 2.1 18 3-20 8-25 (90)
109 2ywk_A Putative RNA-binding pr 22.0 58 0.002 19.2 2.3 17 3-19 23-39 (95)
110 1p1t_A Cleavage stimulation fa 21.8 51 0.0017 19.9 2.0 17 3-19 15-31 (104)
111 1hjr_A Holliday junction resol 21.7 1.1E+02 0.0037 21.3 4.0 31 75-107 120-150 (158)
112 2dgw_A Probable RNA-binding pr 21.7 61 0.0021 19.1 2.4 18 3-20 17-34 (91)
113 3ueb_A Putative uncharacterize 21.5 42 0.0014 22.6 1.6 20 3-24 14-33 (110)
114 3qfe_A Putative dihydrodipicol 20.8 1.1E+02 0.0036 23.4 4.1 46 8-54 122-171 (318)
115 2ek1_A RNA-binding protein 12; 20.7 50 0.0017 19.5 1.8 17 3-19 22-38 (95)
116 2g4b_A Splicing factor U2AF 65 20.6 74 0.0025 20.5 2.8 18 3-20 11-28 (172)
117 2dgs_A DAZ-associated protein 20.4 65 0.0022 19.3 2.3 17 3-19 17-33 (99)
118 2dnz_A Probable RNA-binding pr 20.4 64 0.0022 19.0 2.3 17 3-19 12-28 (95)
119 2e5h_A Zinc finger CCHC-type a 20.4 49 0.0017 19.5 1.7 17 3-19 23-39 (94)
120 1wg1_A KIAA1579 protein, homol 20.3 51 0.0018 19.5 1.8 17 3-19 12-28 (88)
121 2raq_A Conserved protein MTH88 20.2 32 0.0011 23.0 0.8 23 73-95 21-43 (97)
122 1svv_A Threonine aldolase; str 20.2 50 0.0017 23.6 2.0 62 38-108 25-86 (359)
123 1x4c_A Splicing factor, argini 20.0 65 0.0022 19.8 2.3 17 3-19 22-38 (108)
No 1
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.84 E-value=6.6e-21 Score=151.00 Aligned_cols=106 Identities=38% Similarity=0.614 Sum_probs=99.6
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccC-CCCcccCCCCCcccchhhhHHHhcCCCccccCCCCCchhhhhHHHHHHHHHHHH
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEI-WRSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTPYQPEIAQGRLESLLNFQTMV 80 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~-~~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhPyQpe~sQG~Lq~l~e~q~~l 80 (109)
++||+++||.++.+|+.+++++|.. ..+|+|.|.|++++|++ +++++++++|++.|+||||+.+||.++.+.++++++
T Consensus 39 ~~lp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~p~~-v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l 117 (438)
T 1wyu_A 39 IDLPEPLPEWKVLEELRRLAAQNLPAHKAFLGGGVRSHHVPPV-VQALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMI 117 (438)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTSCCCTTCCCCSSCCCCCCCHH-HHHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCcCccccccCCCccCCcCcHH-HHHHHhcchhhhcCCCCcchhhhhHHHHHHHHHHHH
Confidence 5799889999999999999999987 67899999999999997 699998999999999999999999999999999999
Q ss_pred HHhhCCCccCCCCCChhhHHHHHHHhhc
Q psy7866 81 SDLTGLSVANASLLDEATAAAEAMSICH 108 (109)
Q Consensus 81 ~eltGmd~~n~S~ydga~A~~ea~~ma~ 108 (109)
++++|++..|+++.+|+|+.+|++.+++
T Consensus 118 a~~~g~~~~~i~~~~g~taa~ea~~~a~ 145 (438)
T 1wyu_A 118 AELAGLEIANASMYDGATALAEGVLLAL 145 (438)
T ss_dssp HHHHTSSEECSCBSSHHHHHHHHHHHHH
T ss_pred HHHhCCCccceEEeCcHHHHHHHHHHHH
Confidence 9999999999999999999999998874
No 2
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.64 E-value=1.2e-15 Score=122.86 Aligned_cols=95 Identities=19% Similarity=0.263 Sum_probs=80.0
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccC-CCCcccC-CCCCcccchhhhHHHhcCCCccccCCCCCch-hhhhHHHHHHHHHH
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEI-WRSYIGL-GYHNCLVPTVIQRNLFENPGWVTQYTPYQPE-IAQGRLESLLNFQT 78 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~-~~~f~g~-G~~~ky~P~vi~~~ia~~~~f~t~yhPyQpe-~sQG~Lq~l~e~q~ 78 (109)
++|| ++||.|++||+++|+++|.. +.+++++ |+++|++|++ ++.++++ | +.||||||+ .+||.++.+.++++
T Consensus 40 ~~lp-~~~e~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~p~v-~~~~~~~--~-~~~~~~~~~~~~~g~~~l~~~l~~ 114 (474)
T 1wyu_B 40 PRLP-EVDELTLVRHYTGLSRRQVGVDTTFYPLGSCTMKYNPKL-HEEAARL--F-ADLHPYQDPRTAQGALRLMWELGE 114 (474)
T ss_dssp CCCC-CCCHHHHHHHHHHHHTTCCCTTTSCCCBTTTCCCCCCHH-HHHHHHT--T-SSCCTTSCGGGCHHHHHHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHHHhCCCCcccCccccccccccCCHHH-HHHHHHH--H-HhcCCCCchhhChHHHHHHHHHHH
Confidence 5799 59999999999999999986 4444433 6899999996 7999987 4 789999998 79999999999999
Q ss_pred HHHHhhCCCccCCCCCChhhHHHHH
Q psy7866 79 MVSDLTGLSVANASLLDEATAAAEA 103 (109)
Q Consensus 79 ~l~eltGmd~~n~S~ydga~A~~ea 103 (109)
++++++|++. ..+++++++.+..
T Consensus 115 ~la~~~g~~~--~~~~~~ggt~a~~ 137 (474)
T 1wyu_B 115 YLKALTGMDA--ITLEPAAGAHGEL 137 (474)
T ss_dssp HHHHHHTCSE--EECCCSSHHHHHH
T ss_pred HHHHHHCCCc--eeecChHHHHHHH
Confidence 9999999997 4667666655543
No 3
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=98.03 E-value=4.4e-06 Score=67.63 Aligned_cols=96 Identities=11% Similarity=0.081 Sum_probs=67.4
Q ss_pred CCCC-cCCCHHHHHHHHHHHHhhccC--CCCcccCCCCCcccchhhhHHHhcCCCccccC-CCC--CchhhhhHHHHHHH
Q psy7866 2 TNFD-MYLGEHELLEEIQSIANKNEI--WRSYIGLGYHNCLVPTVIQRNLFENPGWVTQY-TPY--QPEIAQGRLESLLN 75 (109)
Q Consensus 2 l~LP-e~lsE~ev~rh~~~ls~~N~~--~~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~y-hPy--Qpe~sQG~Lq~l~e 75 (109)
.+|| ++.++.++++++.++...|.. ...|++...+. -.|..+.. +|++++ .|+ +.+.+++..+...+
T Consensus 80 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~------~~l~~~~n~~~~~~~~s~~~~~le~~ 152 (515)
T 2jis_A 80 LELRSQGESQKQILERCRAVIRYSVKTGHPRFFNQLFSG-LDPHALAG------RIITESLNTSQYTYEIAPVFVLMEEE 152 (515)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHHSCCTTSTTEESSSCCC-CCHHHHHH------HHHHHHHCCCTTCTTTCHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCeEEEeeCC-CCHHHHHH------HHHHHHhccCCCchhhchHHHHHHHH
Confidence 4678 678999999999999888753 33444332221 12222222 344443 454 56789999999999
Q ss_pred HHHHHHHhhCCCccCCCCCChhhHHHHHH
Q psy7866 76 FQTMVSDLTGLSVANASLLDEATAAAEAM 104 (109)
Q Consensus 76 ~q~~l~eltGmd~~n~S~ydga~A~~ea~ 104 (109)
++++|++++|++..+..+.+|+|.....+
T Consensus 153 ~~~~la~l~g~~~~~~~~t~ggtea~~~a 181 (515)
T 2jis_A 153 VLRKLRALVGWSSGDGIFCPGGSISNMYA 181 (515)
T ss_dssp HHHHHHHHHTCSSCEEEEESSHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeEEcCCcHHHHHHH
Confidence 99999999999988889999988554433
No 4
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=98.01 E-value=1.3e-05 Score=63.86 Aligned_cols=104 Identities=6% Similarity=-0.026 Sum_probs=70.6
Q ss_pred CCC-cCCCHHHHHHHHHHHHhh--ccC-CCCcccCCCCCcccchhhhHHHhcCCCccccCCCCCchhhhhHHHHHHHHHH
Q psy7866 3 NFD-MYLGEHELLEEIQSIANK--NEI-WRSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTPYQPEIAQGRLESLLNFQT 78 (109)
Q Consensus 3 ~LP-e~lsE~ev~rh~~~ls~~--N~~-~~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhPyQpe~sQG~Lq~l~e~q~ 78 (109)
+|| +++++.++.+++.++... +.. ..+.+.++.|... |.+ .+.+.+.-+.+...+|++++.++|..+.-.++++
T Consensus 37 ~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~g~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 114 (497)
T 3mc6_A 37 QLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHGG-DDL-IHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVS 114 (497)
T ss_dssp SCCSSCCCHHHHHHHHHHHHHSSCCCCGGGTCBSSSCSCCC-HHH-HHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCEeeecCCCc-hHH-HHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHH
Confidence 466 467999999999999874 322 2223333333221 443 3444332222244678999999999999999999
Q ss_pred HHHHhhCCC--ccCCCCCChhhHHHHHHHhhc
Q psy7866 79 MVSDLTGLS--VANASLLDEATAAAEAMSICH 108 (109)
Q Consensus 79 ~l~eltGmd--~~n~S~ydga~A~~ea~~ma~ 108 (109)
+++++.|++ ..+..+..|++.....+++++
T Consensus 115 ~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~ 146 (497)
T 3mc6_A 115 MVLRMFNAPSDTGCGTTTSGGTESLLLACLSA 146 (497)
T ss_dssp HHHHHTTCCTTTCCEEEESSHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHH
Confidence 999999999 566778888887666665543
No 5
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=97.86 E-value=8.4e-05 Score=58.66 Aligned_cols=96 Identities=10% Similarity=0.000 Sum_probs=67.9
Q ss_pred CCCC-cCCCHHHHHHHHHHHHhhccC----CCCcccCCCCCcccchhhhHHHhcCCCccccCCCCCchhhhhHHHHHHHH
Q psy7866 2 TNFD-MYLGEHELLEEIQSIANKNEI----WRSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTPYQPEIAQGRLESLLNF 76 (109)
Q Consensus 2 l~LP-e~lsE~ev~rh~~~ls~~N~~----~~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhPyQpe~sQG~Lq~l~e~ 76 (109)
++|| +++++.++.+++.++..+|.. ..+|.+ ++++ |.+ .+.+.+- +. -.+++++.++|..+...++
T Consensus 16 ~~lp~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~--~~~~--~~v-~e~~~~a---~~-~~~~~~~~~~~~~~l~~~~ 86 (452)
T 2dgk_A 16 KRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQ--TWDD--ENV-HKLMDLS---IN-KNWIDKEEYPQSAAIDLRC 86 (452)
T ss_dssp CSCCCSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSC--CCCC--HHH-HHHHHHT---TT-CBTTCTTTCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCccCCCCeeC--CCch--HHH-HHHHHHH---hc-cCCCChhhChhHHHHHHHH
Confidence 3678 778999999999999876653 223443 3333 454 5665531 11 1356667789999999999
Q ss_pred HHHHHHhhCCCccC-----CCCCChhhHHHHHHHh
Q psy7866 77 QTMVSDLTGLSVAN-----ASLLDEATAAAEAMSI 106 (109)
Q Consensus 77 q~~l~eltGmd~~n-----~S~ydga~A~~ea~~m 106 (109)
+++++++.|++..+ ..+..|++.....+++
T Consensus 87 ~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~ 121 (452)
T 2dgk_A 87 VNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGM 121 (452)
T ss_dssp HHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHH
Confidence 99999999999876 7888888855444433
No 6
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=96.56 E-value=0.0022 Score=51.35 Aligned_cols=97 Identities=9% Similarity=-0.004 Sum_probs=58.4
Q ss_pred CCC-cCCCHHHHHHHHHHHHhhccC--CCCcccCCCCCcccchhhhHHHhcCCCccccC-CCCC--chhhhhHHHHHHHH
Q psy7866 3 NFD-MYLGEHELLEEIQSIANKNEI--WRSYIGLGYHNCLVPTVIQRNLFENPGWVTQY-TPYQ--PEIAQGRLESLLNF 76 (109)
Q Consensus 3 ~LP-e~lsE~ev~rh~~~ls~~N~~--~~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~y-hPyQ--pe~sQG~Lq~l~e~ 76 (109)
+|| ++.++.++++++.++...+.. ...|++...+. -.|..+.. ++++++ .|.+ .+.+.+.-+.-.+.
T Consensus 65 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~------~~l~~~~n~~~~~~~~~~~~~~le~~~ 137 (504)
T 2okj_A 65 ELSDHPESLEQILVDCRDTLKYGVRTGHPRFFNQLSTG-LDIIGLAG------EWLTSTANTNMFTYEIAPVFVLMEQIT 137 (504)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHTSCCTTCTTEESSSSCC-CCHHHHHH------HHHHHHHCCBSSCTTTCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhhccCCCCCCCEEEEccCC-CCHHHHHH------HHHHHhhccCCCchhhChHHHHHHHHH
Confidence 577 667999999999998876653 34454332211 11222111 334432 4433 34455554444555
Q ss_pred HHHHHHhhCCC--ccCCCCCChhhHHHHHHHh
Q psy7866 77 QTMVSDLTGLS--VANASLLDEATAAAEAMSI 106 (109)
Q Consensus 77 q~~l~eltGmd--~~n~S~ydga~A~~ea~~m 106 (109)
.++++++.|++ ..+..+..|+|.....++.
T Consensus 138 ~~~la~~~g~~~~~~~~~~t~ggtea~~~al~ 169 (504)
T 2okj_A 138 LKKMREIVGWSSKDGDGIFSPGGAISNMYSIM 169 (504)
T ss_dssp HHHHHHHHTCCSSSCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHH
Confidence 69999999999 6677888888855544433
No 7
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=95.89 E-value=0.0086 Score=48.65 Aligned_cols=99 Identities=7% Similarity=-0.082 Sum_probs=59.3
Q ss_pred CCCCc-CCCHHHHHHHHHHHHhhccC--CCCcccCCCCCcccchhhhHHHhcCCCccccCCCCCc--hhhhhHHHHHHHH
Q psy7866 2 TNFDM-YLGEHELLEEIQSIANKNEI--WRSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTPYQP--EIAQGRLESLLNF 76 (109)
Q Consensus 2 l~LPe-~lsE~ev~rh~~~ls~~N~~--~~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhPyQp--e~sQG~Lq~l~e~ 76 (109)
+++|+ +.++.+|++++.++...+.. ..+|+|.-...--.|.++.|.+.+ ++.+.+. +.+.+.-+.-.+.
T Consensus 67 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~f~~~~~~~~~~~~~~~e~l~~------~~~~~~~~~~~~p~~~~le~~~ 140 (511)
T 3vp6_A 67 LELSDHPESLEQILVDCRDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTS------TANTNMFTYEIAPVFVLMEQIT 140 (511)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHTSCCTTSTTEESSSSCCCCHHHHHHHHHHH------HHCCCSSCTTTCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCceEeecCCCcHHHHHHHHHHH------HhccCCCCcccCchHHHHHHHH
Confidence 35776 67999999999999877753 445655332221223332333332 1122111 2456666666778
Q ss_pred HHHHHHhhCCCc--cCCCCCChhhHHHHHHHh
Q psy7866 77 QTMVSDLTGLSV--ANASLLDEATAAAEAMSI 106 (109)
Q Consensus 77 q~~l~eltGmd~--~n~S~ydga~A~~ea~~m 106 (109)
..|++++.|++. ....+..|+|.....+++
T Consensus 141 ~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~ 172 (511)
T 3vp6_A 141 LKKMREIVGWSSKDGDGIFSPGGAISNMYSIM 172 (511)
T ss_dssp HHHHHHHHTCCSSSCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCceEECCchHHHHHHHHH
Confidence 889999999994 455566676665544433
No 8
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=95.76 E-value=0.0083 Score=47.60 Aligned_cols=88 Identities=9% Similarity=-0.024 Sum_probs=51.2
Q ss_pred CC-cCCCHHHHHHHHHHHHhhccC---CCCcccCCCCCcccchhhhHHHhcCCCccccC-CCCCchhhhhHHHHHH--HH
Q psy7866 4 FD-MYLGEHELLEEIQSIANKNEI---WRSYIGLGYHNCLVPTVIQRNLFENPGWVTQY-TPYQPEIAQGRLESLL--NF 76 (109)
Q Consensus 4 LP-e~lsE~ev~rh~~~ls~~N~~---~~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~y-hPyQpe~sQG~Lq~l~--e~ 76 (109)
+| ++.++.++++++.++...|.. ...|+|--...--.|.++.+. ++++ .|++....++.....+ +.
T Consensus 46 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-------~~~~~n~~~~~~~~~~~~~~le~~~ 118 (486)
T 1js3_A 46 APQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADM-------LCGAIGCIGFSWAASPACTELETVM 118 (486)
T ss_dssp CCSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSSCCCCCHHHHHHHH-------HHHHHCCCCSSGGGCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCCCCCceEeCCCCCCHHHHHHHH-------HHHHhCcCccccccChhHHHHHHHH
Confidence 45 456999999999997766653 334544211111123332333 3333 5666554444444444 46
Q ss_pred HHHHHHhhCCCccC---------CCCCChhh
Q psy7866 77 QTMVSDLTGLSVAN---------ASLLDEAT 98 (109)
Q Consensus 77 q~~l~eltGmd~~n---------~S~ydga~ 98 (109)
..++++++|++..+ ..+.+|+|
T Consensus 119 ~~~la~l~g~~~~~~~~~~~~~~~v~t~ggT 149 (486)
T 1js3_A 119 MDWLGKMLQLPEAFLAGEAGEGGGVIQGSAS 149 (486)
T ss_dssp HHHHHHHTTCCGGGCCTTTCSCEEEEESCHH
T ss_pred HHHHHHHhCCCchhcccCCCCCCeEEcCCcH
Confidence 67999999999643 45677777
No 9
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=95.72 E-value=0.087 Score=39.05 Aligned_cols=101 Identities=16% Similarity=0.125 Sum_probs=66.8
Q ss_pred CCCCCc-CCCHHHHHHHHHHHHhhccC--CCCcccCCCCCcccchhhhHHHhcCCCccccCCCCCchhhhhHHHHHHHHH
Q psy7866 1 MTNFDM-YLGEHELLEEIQSIANKNEI--WRSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTPYQPEIAQGRLESLLNFQ 77 (109)
Q Consensus 1 ~l~LPe-~lsE~ev~rh~~~ls~~N~~--~~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhPyQpe~sQG~Lq~l~e~q 77 (109)
|=+||+ +.++.++.+++.++...+.. ...++|.+. ..-.|.+ .+.+... +... ...+...+|.-+..-+++
T Consensus 2 ~~~lp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~v-~~a~~~~---~~~~-~~~~~~~~~~~~~~~~l~ 75 (397)
T 3f9t_A 2 MRNMQEKGVSEKEILEELKKYRSLDLKYEDGNIFGSMC-SNVLPIT-RKIVDIF---LETN-LGDPGLFKGTKLLEEKAV 75 (397)
T ss_dssp CCSCCSSCCCHHHHHHHHHHHHTTSCCGGGTCBCSCSC-CCCCTHH-HHHHHHH---TTCC-TTSGGGBHHHHHHHHHHH
T ss_pred cccCCCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEec-CCCcHHH-HHHHHHH---Hhhc-CCCcccChhHHHHHHHHH
Confidence 345777 36999999999998866554 234555553 3345775 5666542 1111 112223457888888999
Q ss_pred HHHHHhhCCCccCCCCCChhhHHHHHHHhh
Q psy7866 78 TMVSDLTGLSVANASLLDEATAAAEAMSIC 107 (109)
Q Consensus 78 ~~l~eltGmd~~n~S~ydga~A~~ea~~ma 107 (109)
++++++.|.+..+.-+-.|++...+.++.+
T Consensus 76 ~~la~~~~~~~~~i~~~~ggt~a~~~~~~~ 105 (397)
T 3f9t_A 76 ALLGSLLNNKDAYGHIVSGGTEANLMALRC 105 (397)
T ss_dssp HHHHHHTTCTTCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCEEEecCcHHHHHHHHHH
Confidence 999999999877666777887777766554
No 10
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=95.65 E-value=0.015 Score=46.59 Aligned_cols=98 Identities=14% Similarity=0.092 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHHHHhhccC---CCCcccCCCCC-cccchhhhHHHhcCCCccccCCCCCchhhhhHHHHHHHHHHHHHH
Q psy7866 7 YLGEHELLEEIQSIANKNEI---WRSYIGLGYHN-CLVPTVIQRNLFENPGWVTQYTPYQPEIAQGRLESLLNFQTMVSD 82 (109)
Q Consensus 7 ~lsE~ev~rh~~~ls~~N~~---~~~f~g~G~~~-ky~P~vi~~~ia~~~~f~t~yhPyQpe~sQG~Lq~l~e~q~~l~e 82 (109)
+.++.++.+++.++...+.. ...|.|..... ...+..+.+.+.. + ....++++...+|..+.-.++.+++++
T Consensus 75 g~~~~~i~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~p~~~~le~~l~~~la~ 150 (514)
T 3mad_A 75 GLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYAL---Q-SQSNPLHPDLWPSTAKFEAEVVAMTAH 150 (514)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCBSSSCSCCCHHHHHHHHHHHHH---H-TTCCTTCTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCCCCHHHHHHHHHHH---H-hhcCCcccccChHHHHHHHHHHHHHHH
Confidence 46899999999999766643 22333322221 2233332333332 2 345566767788888888999999999
Q ss_pred hhCCCc--cCC--CCCChhhHHHHHHHhhc
Q psy7866 83 LTGLSV--ANA--SLLDEATAAAEAMSICH 108 (109)
Q Consensus 83 ltGmd~--~n~--S~ydga~A~~ea~~ma~ 108 (109)
+.|++. -++ -+..|++...+.++.++
T Consensus 151 ~~g~~~~~~~v~~~~t~ggt~a~~~al~a~ 180 (514)
T 3mad_A 151 MLGGDAAGGTVCGTVTSGGTESLLLAMKTY 180 (514)
T ss_dssp HTTGGGGTSCCEEEEESSHHHHHHHHHHHH
T ss_pred HcCCCCccCCcceEEcCcHHHHHHHHHHHH
Confidence 999984 344 77778887777766554
No 11
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=92.04 E-value=0.015 Score=50.27 Aligned_cols=78 Identities=12% Similarity=0.218 Sum_probs=55.9
Q ss_pred CcccCCCCCcccchhhhHHHh-c-CC---CccccC--CCCCchhhh-----hHH----HHHHHHHHHHHHhhCCCccCCC
Q psy7866 29 SYIGLGYHNCLVPTVIQRNLF-E-NP---GWVTQY--TPYQPEIAQ-----GRL----ESLLNFQTMVSDLTGLSVANAS 92 (109)
Q Consensus 29 ~f~g~G~~~ky~P~vi~~~ia-~-~~---~f~t~y--hPyQpe~sQ-----G~L----q~l~e~q~~l~eltGmd~~n~S 92 (109)
.|...|.|.+|.|.- ...-. . .| +|++.| +|||+++++ |.| +.+.++|+.++++.|.+.+ ..
T Consensus 116 ~~~~~~~~~~~~Pgh-~~g~~~~~~p~g~~~~~~~g~~~~~~di~~~~~~l~~l~~~~~~i~e~e~~lA~~~gae~~-i~ 193 (730)
T 1c4k_A 116 EYVSRYLIQFDCPGH-QGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLIHEGPAVAAEKHAARVYNADKT-YF 193 (730)
T ss_dssp HHHTSCCCCCSSSTT-TTTTTGGGSHHHHHHHHHHCSHHHHSCCCTTSGGGCBTTTTBTHHHHHHHHHHHHTTCSEE-EE
T ss_pred HHHhcCCcccccCcc-ccccccCCcchhhHHHhhcchhhhhHHhhhhhccCCCccCChHHHHHHHHHHHHHHCCCcE-EE
Confidence 466778888888873 21111 1 11 565555 678888777 555 7899999999999999975 56
Q ss_pred CCChhhHHHHHHHhhc
Q psy7866 93 LLDEATAAAEAMSICH 108 (109)
Q Consensus 93 ~ydga~A~~ea~~ma~ 108 (109)
+..|+++...++.+++
T Consensus 194 v~nGtt~an~~ai~al 209 (730)
T 1c4k_A 194 VLGGSSNANNTVTSAL 209 (730)
T ss_dssp ESSHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHh
Confidence 7788888888777653
No 12
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=91.83 E-value=0.82 Score=36.02 Aligned_cols=88 Identities=11% Similarity=-0.005 Sum_probs=53.5
Q ss_pred CCC-cCCCHHHHHHHHHHHHhhccC-CCCcccCCCCCcccchhhhHHHh------------cCCCccccCCCCCch--hh
Q psy7866 3 NFD-MYLGEHELLEEIQSIANKNEI-WRSYIGLGYHNCLVPTVIQRNLF------------ENPGWVTQYTPYQPE--IA 66 (109)
Q Consensus 3 ~LP-e~lsE~ev~rh~~~ls~~N~~-~~~f~g~G~~~ky~P~vi~~~ia------------~~~~f~t~yhPyQpe--~s 66 (109)
+|| +++++.++.+...++...+.. +...-+.|- +-++| .+.+. ...+|++ .||. .+
T Consensus 57 ~lp~~g~~~~~i~~~~~~~~~~~~~~yld~aa~~~---~~~~v-~~a~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 128 (456)
T 2z67_A 57 KIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGE---REART-YSKIHEELSSGFCHGIGRSGNLVD----PQPKASGA 128 (456)
T ss_dssp SCCSSCCCHHHHHHHHHHHHTTBGGGCTTCEECSS---CCCCC-SCHHHHHHTTTCTTCBSBTTBTTS----CCTTBHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcccccccccccccc---ccccc-cccccCccccccCCCccHHHHHHh----hCcccccC
Confidence 578 678999999888887665432 222223232 22222 22222 1123322 3443 34
Q ss_pred hhHHHHHHHHHHHHHHhhCCCccCCCCCChhhH
Q psy7866 67 QGRLESLLNFQTMVSDLTGLSVANASLLDEATA 99 (109)
Q Consensus 67 QG~Lq~l~e~q~~l~eltGmd~~n~S~ydga~A 99 (109)
.+.-+..-+++++++++.|.+.. +.+..|+|.
T Consensus 129 ~~~~~~~~~~~~~la~~~g~~~~-~~~t~g~te 160 (456)
T 2z67_A 129 SIMYALTNKILESFFKQLGLNVH-AIATPISTG 160 (456)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCE-EEEESSCHH
T ss_pred cHHHHHHHHHHHHHHHHcCCCCC-EEEeCcHHH
Confidence 56778888999999999999865 677778873
No 13
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=76.35 E-value=2.5 Score=25.97 Aligned_cols=28 Identities=11% Similarity=0.123 Sum_probs=24.0
Q ss_pred CCCCcC---CCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMY---LGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~---lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|++.+. .|..+|.++|++|-..|..|.|
T Consensus 10 Lgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG 40 (65)
T 2guz_B 10 LNIEESKGDLNMDKINNRFNYLFEVNDKEKG 40 (65)
T ss_dssp TTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT
T ss_pred hCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC
Confidence 566665 7899999999999999998874
No 14
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=74.01 E-value=2.9 Score=25.44 Aligned_cols=28 Identities=21% Similarity=0.108 Sum_probs=24.5
Q ss_pred CCCCc-CCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDM-YLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe-~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|+||+ ..|..||.+.|.+|+.++..|.+
T Consensus 20 Lgl~~~~a~~~eIk~ayr~l~~~~HPDk~ 48 (71)
T 2guz_A 20 LNLTENTLTKKKLKEVHRKIMLANHPDKG 48 (71)
T ss_dssp TTCCTTTCCHHHHHHHHHHHHHHHCGGGT
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 67886 58999999999999999988763
No 15
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=63.22 E-value=42 Score=26.66 Aligned_cols=79 Identities=5% Similarity=-0.082 Sum_probs=44.5
Q ss_pred CCc-CCCHHHHHHHHHHHHhhccCCCCcccCCCCCcccchhhhHHHhcCCCccccCCCCCchhhhhHHHHHHHHHHHHHH
Q psy7866 4 FDM-YLGEHELLEEIQSIANKNEIWRSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTPYQPEIAQGRLESLLNFQTMVSD 82 (109)
Q Consensus 4 LPe-~lsE~ev~rh~~~ls~~N~~~~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhPyQpe~sQG~Lq~l~e~q~~l~e 82 (109)
+|+ +.+..++.+.+.+....+ +...|.....+.++.|..+.+.+.+- + .. ....+..+.+.-+..-++.++|++
T Consensus 32 ~p~~~~~~~~~~~~~~~~i~l~-gnp~~~l~s~~t~~~~~~v~~~l~~~--~-~~-~~~~~~~~p~~~~le~~~~~~la~ 106 (502)
T 3hbx_A 32 MPENSIPKEAAYQIINDELMLD-GNPRLNLASFVTTWMEPECDKLIMSS--I-NK-NYVDMDEYPVTTELQNRCVNMIAH 106 (502)
T ss_dssp CCSSCCCHHHHHHHHHHHGGGS-CCGGGBTTCCSCCCCCHHHHHHHHHT--T-TC-BTTCTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhccC-CCCCceeccccCCCCCHHHHHHHHHH--h-cc-CCCChhcChhHHHHHHHHHHHHHH
Confidence 444 346778888887665433 22332222223344444335555542 1 11 112234466778888889999999
Q ss_pred hhCCC
Q psy7866 83 LTGLS 87 (109)
Q Consensus 83 ltGmd 87 (109)
+.|.+
T Consensus 107 l~g~~ 111 (502)
T 3hbx_A 107 LFNAP 111 (502)
T ss_dssp HTTCC
T ss_pred HhCCC
Confidence 99998
No 16
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.06 E-value=12 Score=22.85 Aligned_cols=28 Identities=7% Similarity=-0.027 Sum_probs=24.0
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|+||...|..||.+.|.+|+.+-+.|.+
T Consensus 15 Lgv~~~as~~eIk~ayr~l~~~~HPDk~ 42 (82)
T 2ej7_A 15 LDVPRQASSEAIKKAYRKLALKWHPDKN 42 (82)
T ss_dssp TTCCTTCCHHHHHHHHHHHHTTSCTTTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 6788888999999999999998876654
No 17
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=58.11 E-value=13 Score=23.89 Aligned_cols=28 Identities=18% Similarity=0.093 Sum_probs=24.3
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|+||...|..||.+.|.+|+.+.+.|.+
T Consensus 9 Lgv~~~as~~eIk~ayr~l~~~~HPDk~ 36 (103)
T 1bq0_A 9 LGVSKTAEEREIRKAYKRLAMKYHPDRN 36 (103)
T ss_dssp TSSCSSCCHHHHHHHHHHHHTTTCTTTC
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 6788889999999999999998877654
No 18
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.06 E-value=10 Score=22.94 Aligned_cols=28 Identities=11% Similarity=0.018 Sum_probs=23.7
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|+||...|..||.+.|.+|+.+-+.|.+
T Consensus 13 Lgv~~~a~~~~Ik~ayr~l~~~~HPD~~ 40 (79)
T 2dn9_A 13 LGVPRNASQKEIKKAYYQLAKKYHPDTN 40 (79)
T ss_dssp HTCCTTCCHHHHHHHHHHHHHHTCTTTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 5678878999999999999998876654
No 19
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=57.22 E-value=11 Score=22.56 Aligned_cols=28 Identities=14% Similarity=0.043 Sum_probs=23.8
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|+||...|..||.+.|.+|+.+-..|.+
T Consensus 14 Lgl~~~a~~~eIk~ayr~l~~~~HPD~~ 41 (73)
T 2och_A 14 LGVKPDASDNELKKAYRKMALKFHPDKN 41 (73)
T ss_dssp HTCCTTCCHHHHHHHHHHHHHHTCTTTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 5678778999999999999998877654
No 20
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.19 E-value=9.9 Score=22.99 Aligned_cols=28 Identities=11% Similarity=0.017 Sum_probs=23.6
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|+||...|..||.+.|.+|+.+...|.+
T Consensus 13 Lgv~~~as~~eIk~ayr~l~~~~HPDk~ 40 (78)
T 2ctp_A 13 LGVSRGASDEDLKKAYRRLALKFHPDKN 40 (78)
T ss_dssp HTCCTTCCHHHHHHHHHHHHTTSCTTTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 5678878999999999999998776654
No 21
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.42 E-value=11 Score=23.50 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=24.0
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|.||...|..||.+.|.+|+.+-+.|.+
T Consensus 13 Lgv~~~as~~eIk~ayr~l~~~~HPDk~ 40 (88)
T 2ctr_A 13 LGVPKSASERQIKKAFHKLAMKYHPDKN 40 (88)
T ss_dssp HTCCTTCCHHHHHHHHHHHHHHTCTTTC
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 5678778999999999999998887654
No 22
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=54.63 E-value=55 Score=25.58 Aligned_cols=99 Identities=13% Similarity=0.063 Sum_probs=55.2
Q ss_pred CCc-CCCHHHHHHHHHHHHhhcc---CCCCcccCCCCCcccchhhhHHHhcCCCccccCCCCCchhhhhHHHHHHHHHHH
Q psy7866 4 FDM-YLGEHELLEEIQSIANKNE---IWRSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTPYQPEIAQGRLESLLNFQTM 79 (109)
Q Consensus 4 LPe-~lsE~ev~rh~~~ls~~N~---~~~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhPyQpe~sQG~Lq~l~e~q~~ 79 (109)
+|+ +.+-.++++++.+.--... ....|++.-.+..-.|.+ .+.+... ..+.....-+.+.+.-+.--+..++
T Consensus 73 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~v-~~~~~~~---~~n~~~~~~~~~~~~~~le~~~~~~ 148 (497)
T 2qma_A 73 LDNKNAPLKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAV-AAEAMIA---ALNQSMDSWDQASSATYVEQKVVNW 148 (497)
T ss_dssp SSSCCCCHHHHHHHHHHHTTTTSCCTTSTTBCSSSCCCCBHHHH-HHHHHHH---HHCCCTTCGGGCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCcHHHH-HHHHHHH---hhcccccchhhChHHHHHHHHHHHH
Confidence 453 3466788888887433332 235577766666666675 5555431 1111111113344555555566889
Q ss_pred HHHhhCCCc-cCCCCCChhhHHHHHHHh
Q psy7866 80 VSDLTGLSV-ANASLLDEATAAAEAMSI 106 (109)
Q Consensus 80 l~eltGmd~-~n~S~ydga~A~~ea~~m 106 (109)
|+++.|.+. ...-+-.|++.....++.
T Consensus 149 la~~~g~~~~~~~~~t~ggt~a~~~al~ 176 (497)
T 2qma_A 149 LCDKYDLSEKADGIFTSGGTQSNQMGLM 176 (497)
T ss_dssp HHHHTTCCTTCEEEEESSHHHHHHHHHH
T ss_pred HHHHhCCCCCCCeEEcCCchHHHHHHHH
Confidence 999999964 344555666655444433
No 23
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=54.08 E-value=13 Score=22.44 Aligned_cols=28 Identities=7% Similarity=-0.025 Sum_probs=23.7
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|++|...|..||.+.|.+|+.+-+.|.+
T Consensus 9 Lgv~~~as~~~Ik~ayr~l~~~~HPD~~ 36 (77)
T 1hdj_A 9 LGLARGASDEEIKRAYRRQALRYHPDKN 36 (77)
T ss_dssp HTCCTTCCHHHHHHHHHHHHHTTCTTTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 5688878999999999999998876654
No 24
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.95 E-value=11 Score=23.69 Aligned_cols=28 Identities=7% Similarity=-0.103 Sum_probs=23.4
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|+|+...|..||.+-|.+|+.+.+.|.+
T Consensus 33 Lgv~~~as~~eIk~aYr~la~~~HPDk~ 60 (90)
T 2ys8_A 33 LGVKPGASRDEVNKAYRKLAVLLHPDKC 60 (90)
T ss_dssp HTCCTTCCHHHHHHHHHHHHHHHCTTTC
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 4677778999999999999998887754
No 25
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=53.24 E-value=20 Score=24.29 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=38.1
Q ss_pred CCcCCCHHHHHHHHHHHHhhccCCCCcccCCCCCcccchhhhHHHhcCCCccccCCC-C-Cch-hhhhHHHHHHHHHHHH
Q psy7866 4 FDMYLGEHELLEEIQSIANKNEIWRSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTP-Y-QPE-IAQGRLESLLNFQTMV 80 (109)
Q Consensus 4 LPe~lsE~ev~rh~~~ls~~N~~~~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhP-y-Qpe-~sQG~Lq~l~e~q~~l 80 (109)
||+ ||+.++.+.+.-+-++.. +|.+ |.- ..+.|.+.|.- + -|- ..+-.=|+|.|++..+
T Consensus 17 LP~-lt~eqI~kQI~Yll~qGw--------------~p~l--Ef~-d~~~~~~~yW~mwklPmf~~~d~~~Vl~Ele~C~ 78 (109)
T 1rbl_M 17 LPP-LSDRQIAAQIEYMIEQGF--------------HPLI--EFN-EHSNPEEFYWTMWKLPLFACAAPQQVLDEVRECR 78 (109)
T ss_dssp SSC-CCHHHHHHHHHHHHHHTC--------------EEEE--EEE-SCCCTTCCCCEECSSCCTTCCCHHHHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHHHHCCC--------------EEEE--Eec-cCccccccEEeecccCCcCCCCHHHHHHHHHHHH
Confidence 897 999999999999888753 3432 222 22223333321 1 111 2444567888888888
Q ss_pred HHhh
Q psy7866 81 SDLT 84 (109)
Q Consensus 81 ~elt 84 (109)
++-.
T Consensus 79 k~~p 82 (109)
T 1rbl_M 79 SEYG 82 (109)
T ss_dssp HHCT
T ss_pred HHCC
Confidence 7755
No 26
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=52.94 E-value=13 Score=23.06 Aligned_cols=28 Identities=4% Similarity=0.015 Sum_probs=23.8
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|+||...+..||.+.|.+|+.+.+.|.+
T Consensus 23 Lgv~~~as~~eIk~ayr~l~~~~HPDk~ 50 (88)
T 2cug_A 23 LGVSRTASQADIKKAYKKLAREWHPDKN 50 (88)
T ss_dssp HTCCTTCCHHHHHHHHHHHHHHSCTTTC
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 5677778999999999999998877654
No 27
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=51.86 E-value=11 Score=23.35 Aligned_cols=28 Identities=0% Similarity=-0.248 Sum_probs=23.9
Q ss_pred CCCCcC--CCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMY--LGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~--lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|+||.. .|..||.+-|.+|+.+...|.+
T Consensus 17 Lgl~~~~~a~~~eIk~aYr~la~~~HPDk~ 46 (79)
T 1faf_A 17 LKLPRQLWGDFGRMQQAYKQQSLLLHPDKG 46 (79)
T ss_dssp HTCCSSSTTCHHHHHHHHHHHHHHSSGGGS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 567777 8999999999999999887763
No 28
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=51.12 E-value=8.2 Score=26.66 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=18.8
Q ss_pred CCchhhhhHHHHHHHHHHHHHHhh
Q psy7866 61 YQPEIAQGRLESLLNFQTMVSDLT 84 (109)
Q Consensus 61 yQpe~sQG~Lq~l~e~q~~l~elt 84 (109)
.||+-+|-+|+.|++...-||.++
T Consensus 1 mqp~~VqERLdSL~~ID~kl~slL 24 (115)
T 4gwp_A 1 MQPPYIQERLKSLNDIETQLCSML 24 (115)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 488989999999999998887665
No 29
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.71 E-value=16 Score=23.28 Aligned_cols=28 Identities=4% Similarity=-0.190 Sum_probs=23.9
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|.|+...|..||.+.|.+|+.+.+.|.+
T Consensus 23 Lgv~~~as~~eIk~ayr~l~~~~HPDk~ 50 (99)
T 2yua_A 23 LGVPSTATQAQIKAAYYRQCFLYHPDRN 50 (99)
T ss_dssp HTCCTTCCHHHHHHHHHHHHHHSCTTTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 5677778999999999999999887654
No 30
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=49.60 E-value=20 Score=22.99 Aligned_cols=28 Identities=4% Similarity=-0.082 Sum_probs=24.4
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|+++...|..||.+-|.+|+.+...|.+
T Consensus 8 Lgv~~~as~~eIk~aYr~la~~~HPDk~ 35 (99)
T 2lgw_A 8 LDVPRSASADDIKKAYRRKALQWHPDKN 35 (99)
T ss_dssp SSSCTTSCHHHHHHHHHHHHHHTSTTTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 6788888999999999999999887754
No 31
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=48.80 E-value=15 Score=23.03 Aligned_cols=28 Identities=18% Similarity=0.030 Sum_probs=24.0
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|.|+...|..||.+.|.+|+.+-+.|.+
T Consensus 14 Lgv~~~as~~eIk~ayr~l~~~~HPDk~ 41 (92)
T 2o37_A 14 LGVSPSANEQELKKGYRKAALKYHPDKP 41 (92)
T ss_dssp HTCCTTCCHHHHHHHHHHHHHHHCTTST
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 5678778999999999999998877654
No 32
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=48.27 E-value=25 Score=26.44 Aligned_cols=43 Identities=5% Similarity=0.034 Sum_probs=33.1
Q ss_pred hhhhHHHHHHHHHHHHHHhhCCCccCCCCCChhhHHHHHHHhh
Q psy7866 65 IAQGRLESLLNFQTMVSDLTGLSVANASLLDEATAAAEAMSIC 107 (109)
Q Consensus 65 ~sQG~Lq~l~e~q~~l~eltGmd~~n~S~ydga~A~~ea~~ma 107 (109)
.+++.-+.+-++.+.|+++.|.+.-+.-+-.|++...+.++.+
T Consensus 55 ~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~ 97 (432)
T 3a9z_A 55 AGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHS 97 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHH
Confidence 3567778889999999999998766666777877776665543
No 33
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=46.28 E-value=23 Score=24.00 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=36.8
Q ss_pred CCcCCCHHHHHHHHHHHHhhccCCCCcccCCCCCcccchhhhHHHhcCCCccccCCC-C-Cc-hhhhhHHHHHHHHHHHH
Q psy7866 4 FDMYLGEHELLEEIQSIANKNEIWRSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTP-Y-QP-EIAQGRLESLLNFQTMV 80 (109)
Q Consensus 4 LPe~lsE~ev~rh~~~ls~~N~~~~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhP-y-Qp-e~sQG~Lq~l~e~q~~l 80 (109)
||+ ||+.++.+.+.-+-++.. +|.+ |.- ..+.|-+.|.- + -| -..+-.=|+|.|++..+
T Consensus 19 LP~-lt~eqI~kQV~Yll~qGw--------------~p~i--Ef~-d~~~~~~~yW~mwklPmf~~~d~~~Vl~El~~C~ 80 (110)
T 1svd_M 19 LPP-MNAERIRAQIKYAIAQGW--------------SPGI--EHV-EVKNSMNQYWYMWKLPFFGEQNVDNVLAEIEACR 80 (110)
T ss_dssp SCC-CCHHHHHHHHHHHHHTTC--------------EEEE--EEE-CGGGTTCSCCEEESCCCTTCCCHHHHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHHHHCCC--------------eeEE--Eec-cCCccCCcEEeecccCCcCCCCHHHHHHHHHHHH
Confidence 897 999999999998888753 3331 111 11222233321 0 11 12344467888888888
Q ss_pred HHhh
Q psy7866 81 SDLT 84 (109)
Q Consensus 81 ~elt 84 (109)
++-.
T Consensus 81 k~~p 84 (110)
T 1svd_M 81 SAYP 84 (110)
T ss_dssp HHST
T ss_pred HHCC
Confidence 7755
No 34
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.84 E-value=26 Score=22.74 Aligned_cols=28 Identities=14% Similarity=0.037 Sum_probs=24.1
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|+||...+..||.+.|.+|+.+-+.|.+
T Consensus 26 Lgv~~~as~~eIk~ayr~l~~~~HPDk~ 53 (112)
T 2ctq_A 26 LGCDELSSVEQILAEFKVRALECHPDKH 53 (112)
T ss_dssp TTCCTTSCHHHHHHHHHHHHHTTCTTTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 6788888999999999999998877654
No 35
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=44.29 E-value=27 Score=23.97 Aligned_cols=65 Identities=17% Similarity=0.151 Sum_probs=38.1
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCCCCcccCCCCCcccchhhhHHHhcCCCccccCCCC--Cch-hhhhHHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIWRSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTPY--QPE-IAQGRLESLLNFQTM 79 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhPy--Qpe-~sQG~Lq~l~e~q~~ 79 (109)
-||+ ||+.+|.+.+.-|.++.. +|.+ |. +..+.|-+.|.-. -|- ..+-.=|+|.|++..
T Consensus 15 yLP~-Lt~eqI~kQV~yll~qGw--------------~~~l--E~-~d~~~~~~~yW~mWklPmf~~~d~~~Vl~Ele~C 76 (118)
T 3zxw_B 15 YLPP-LSDAQIARQIQYAIDQGY--------------HPCV--EF-NETSNAEIRYWTMWKLPLFNCTNAQDVLNEVQQC 76 (118)
T ss_dssp CSCC-CCHHHHHHHHHHHHHHTC--------------EEEE--EE-ESCCCTTCCCCEEESSCCTTCCCHHHHHHHHHHH
T ss_pred cCCC-CCHHHHHHHHHHHHhCCC--------------eeEE--Ee-ccCCCcccCEEeecccCCcCCCCHHHHHHHHHHH
Confidence 3897 999999999999888764 3331 11 1222222333210 111 244555788888888
Q ss_pred HHHhhC
Q psy7866 80 VSDLTG 85 (109)
Q Consensus 80 l~eltG 85 (109)
+++-.|
T Consensus 77 ~k~~p~ 82 (118)
T 3zxw_B 77 RSEYPN 82 (118)
T ss_dssp HHHCTT
T ss_pred HHHCCC
Confidence 877443
No 36
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=43.09 E-value=23 Score=23.00 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=23.9
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|+|+...|..||.+.|.+|+.+-+.|.+
T Consensus 23 Lgv~~~as~~eIk~aYr~la~~~HPDk~ 50 (109)
T 2ctw_A 23 LGLDKNATSDDIKKSYRKLALKYHPDKN 50 (109)
T ss_dssp HTCCTTCCHHHHHHHHHHHHHHSCTTTS
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 5677778999999999999998887654
No 37
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.53 E-value=15 Score=22.94 Aligned_cols=28 Identities=4% Similarity=-0.002 Sum_probs=23.7
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|+||...+..||.+.|.+|+.+.+.|.+
T Consensus 15 Lgv~~~as~~eIk~ayr~l~~~~HPDk~ 42 (92)
T 2dmx_A 15 LGVQASASPEDIKKAYRKLALRWHPDKN 42 (92)
T ss_dssp HTCCTTCCTTHHHHHHHHHHHHTCTTTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 5678778999999999999998877654
No 38
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=42.52 E-value=17 Score=22.55 Aligned_cols=28 Identities=11% Similarity=-0.059 Sum_probs=23.2
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|+++...|..||.+.|.+|+.+.+.|..
T Consensus 22 Lgv~~~as~~eIk~aYr~l~~~~HPDk~ 49 (94)
T 1wjz_A 22 LGADPSANMSDLKQKYQKLILLYHPDKQ 49 (94)
T ss_dssp TTCCTTCCHHHHHHHHHHTTSSSCSTTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 6788878999999999999888776653
No 39
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=41.97 E-value=19 Score=21.93 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=16.3
Q ss_pred CCCcCCCHHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQSI 20 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~l 20 (109)
+||..++|.||.++|...
T Consensus 8 nLp~~~te~~l~~~F~~~ 25 (91)
T 2lxi_A 8 MLPQAATEDDIRGQLQSH 25 (91)
T ss_dssp TCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh
Confidence 699999999999999775
No 40
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=41.14 E-value=22 Score=20.23 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=16.1
Q ss_pred CCCcCCCHHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQSI 20 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~l 20 (109)
+||..++|.+|.++|.+.
T Consensus 6 nLp~~~t~~~l~~~F~~~ 23 (75)
T 1iqt_A 6 GLSPDTPEEKIREYFGGF 23 (75)
T ss_dssp CCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhc
Confidence 689889999999999775
No 41
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=40.19 E-value=21 Score=24.38 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhCCCccCCCCCChhhHHHHHHHhhcC
Q psy7866 73 LLNFQTMVSDLTGLSVANASLLDEATAAAEAMSICHR 109 (109)
Q Consensus 73 l~e~q~~l~eltGmd~~n~S~ydga~A~~ea~~ma~r 109 (109)
.||+|..|.++.|+|.+.. -...+|++-|+|
T Consensus 26 ~~e~rrglN~l~~~DlVP~------P~ii~aaLrAcR 56 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPE------PKIIDAALRACR 56 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCC------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCC------cHHHHHHHHHHH
Confidence 5899999999999999764 345555555443
No 42
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=39.01 E-value=87 Score=23.17 Aligned_cols=70 Identities=13% Similarity=0.100 Sum_probs=45.5
Q ss_pred CcccchhhhHHHhcCCCccccC-CCCC--chhhhhHHHHHHHHHHHHHHhhCCCccCCCCCChhhHHHHHHHhh
Q psy7866 37 NCLVPTVIQRNLFENPGWVTQY-TPYQ--PEIAQGRLESLLNFQTMVSDLTGLSVANASLLDEATAAAEAMSIC 107 (109)
Q Consensus 37 ~ky~P~vi~~~ia~~~~f~t~y-hPyQ--pe~sQG~Lq~l~e~q~~l~eltGmd~~n~S~ydga~A~~ea~~ma 107 (109)
.+-.|.| .+.+.+.-.-...| .|.. .....+.-+.+-++.+.|+++.|.+.-++-+-.|++...+.++.+
T Consensus 32 ~~~~~~v-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~ 104 (423)
T 3lvm_A 32 TPVDPRV-AEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKG 104 (423)
T ss_dssp CCCCHHH-HHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHH
T ss_pred CCCCHHH-HHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHH
Confidence 3556664 67776542200111 2322 123567788889999999999999877777778888777766553
No 43
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=37.49 E-value=21 Score=20.40 Aligned_cols=17 Identities=0% Similarity=0.046 Sum_probs=15.1
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 6 nlp~~~t~~~l~~~F~~ 22 (75)
T 2mss_A 6 GLSVNTTVEDVKHYFEQ 22 (75)
T ss_dssp CCCSSCCHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHh
Confidence 68998999999999965
No 44
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=37.08 E-value=35 Score=24.85 Aligned_cols=39 Identities=5% Similarity=0.122 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhCCCccCCCCCChhhHHHHHHHhhc
Q psy7866 70 LESLLNFQTMVSDLTGLSVANASLLDEATAAAEAMSICH 108 (109)
Q Consensus 70 Lq~l~e~q~~l~eltGmd~~n~S~ydga~A~~ea~~ma~ 108 (109)
.+.+-++.+.|+++.|.+.-++-+-.|++...+.+..++
T Consensus 58 ~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~ 96 (390)
T 1elu_A 58 QQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGL 96 (390)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCC
Confidence 466788999999999988766777788888888776654
No 45
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=37.05 E-value=26 Score=20.47 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=16.6
Q ss_pred CCCcCCCHHHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQSIA 21 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls 21 (109)
+||..++|.+|.++|.+..
T Consensus 13 nLp~~~t~~~l~~~F~~~~ 31 (87)
T 2hzc_A 13 NIPFGITEEAMMDFFNAQM 31 (87)
T ss_dssp SCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHh
Confidence 6898899999999998764
No 46
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=35.27 E-value=30 Score=23.55 Aligned_cols=28 Identities=11% Similarity=-0.059 Sum_probs=24.3
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|+||...|..||.+-|.+|+.+...|..
T Consensus 16 Lgv~~~a~~~eIk~aYr~l~~~~HPDk~ 43 (155)
T 2l6l_A 16 LGADPSANISDLKQKYQKLILMYHPDKQ 43 (155)
T ss_dssp HTCCTTCCHHHHHHHHHHHHHHHSCCCC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 5788888999999999999999887654
No 47
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.61 E-value=34 Score=20.38 Aligned_cols=17 Identities=12% Similarity=0.133 Sum_probs=15.1
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 15 nLp~~~t~~~l~~~F~~ 31 (93)
T 2cqh_A 15 NLSPAVTADDLRQLFGD 31 (93)
T ss_dssp CCCTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 68988999999999965
No 48
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=32.41 E-value=45 Score=24.00 Aligned_cols=43 Identities=16% Similarity=0.046 Sum_probs=33.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhCCCccCCCCCChhhHHHHHHHhh
Q psy7866 65 IAQGRLESLLNFQTMVSDLTGLSVANASLLDEATAAAEAMSIC 107 (109)
Q Consensus 65 ~sQG~Lq~l~e~q~~l~eltGmd~~n~S~ydga~A~~ea~~ma 107 (109)
..++.-+.+-++++.++++.|.+..++-+-.|++...+.++.+
T Consensus 37 ~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~ 79 (382)
T 4hvk_A 37 YGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIG 79 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHH
Confidence 3567788889999999999999876677777888777665543
No 49
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=31.96 E-value=27 Score=24.15 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=23.3
Q ss_pred CCCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
|++|...|..||.+.|.+|+.+.+.|.+
T Consensus 8 l~~~~~a~~~~ik~ay~~l~~~~HPD~~ 35 (210)
T 3apq_A 8 LGVSKTASSREIRQAFKKLALKLHPDKN 35 (210)
T ss_dssp HTCCTTCCHHHHHHHHHHHHHHHCGGGC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 5678778999999999999998876543
No 50
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=31.90 E-value=59 Score=25.12 Aligned_cols=71 Identities=13% Similarity=0.100 Sum_probs=39.6
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCC--CCcccCCCCCcccchhhhHHHhcCCCccccCCC------------CCchhhhh
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIW--RSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTP------------YQPEIAQG 68 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~--~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhP------------yQpe~sQG 68 (109)
.||+..||.|+++.+.+|-+....+ .-++|+- .|.+..-|.+.|.-.-.- ..+|| +-|-+..|
T Consensus 68 ~lp~~~s~~ell~~i~~lN~D~~v~GIlvqlPlP--~~id~~~i~~~I~p~KDV-DG~~p~n~g~l~~g~~~~~PcTp~g 144 (281)
T 2c2x_A 68 DLPADISTATLNETIDELNANPDCTGYIVQLPLP--KHLDENAALERVDPAKDA-DGLHPTNLGRLVLGTPAPLPCTPRG 144 (281)
T ss_dssp EECTTCCHHHHHHHHHHHHHCTTCCEEEECSCCC--TTSCHHHHHHHSCGGGBT-TSCCHHHHHHHHHTCCCCCCHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCC--CCCCHHHHHhhcCccCCc-cCCChhhHHHHhCCCCCCCCChHHH
Confidence 4788899999999998885543322 1234442 244443334444222222 33333 44556778
Q ss_pred HHHHHHHH
Q psy7866 69 RLESLLNF 76 (109)
Q Consensus 69 ~Lq~l~e~ 76 (109)
.++.+-++
T Consensus 145 i~~ll~~~ 152 (281)
T 2c2x_A 145 IVHLLRRY 152 (281)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 77776554
No 51
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.71 E-value=38 Score=20.07 Aligned_cols=18 Identities=17% Similarity=0.062 Sum_probs=15.7
Q ss_pred CCCcCCCHHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQSI 20 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~l 20 (109)
+||..++|.+|.++|.+.
T Consensus 16 nlp~~~t~~~l~~~F~~~ 33 (90)
T 2dnp_A 16 NVSAACTSQELRSLFERR 33 (90)
T ss_dssp SCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHcC
Confidence 689889999999999764
No 52
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.39 E-value=30 Score=20.83 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=14.8
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 24 nlp~~~t~~~l~~~F~~ 40 (97)
T 1why_A 24 GLGPNTSLAALAREFDR 40 (97)
T ss_dssp CCCSSCCHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999954
No 53
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=30.07 E-value=29 Score=21.54 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=15.1
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 26 nLp~~~te~~L~~~F~~ 42 (99)
T 4fxv_A 26 YLPQNMTQDELRSLFSS 42 (99)
T ss_dssp SCCTTCCHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 69999999999999954
No 54
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.83 E-value=31 Score=20.06 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=14.8
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 19 ~l~~~~t~~~l~~~f~~ 35 (85)
T 2ytc_A 19 GLGDTITETDLRNHFYQ 35 (85)
T ss_dssp CCTTTSCHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999954
No 55
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=29.33 E-value=46 Score=25.67 Aligned_cols=79 Identities=15% Similarity=0.100 Sum_probs=43.1
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCC--CCcccCCCCCcccchhhhHHHhcCCCccccCCC------------CCchhhhh
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIW--RSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTP------------YQPEIAQG 68 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~--~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhP------------yQpe~sQG 68 (109)
.||+..||.|+++.+.+|-+....+ .-++|+- .|.+..-|.+.|.-.-.- ..+|| +-|-+.+|
T Consensus 62 ~lp~~~s~~ell~~I~~lN~D~~v~GIlvqlPLP--~~id~~~v~~~I~p~KDV-DG~~p~n~G~l~~g~~~~~PcTp~g 138 (276)
T 3ngx_A 62 EKYDDISMKDLLKRIDDLAKDPQINGIMIENPLP--KGFDYYEIVRNIPYYKDV-DALSPYNQGLIALNREFLVPATPRA 138 (276)
T ss_dssp EEESSCCHHHHHHHHHHHHHCTTCCEEEECSCCC--TTCCHHHHHTTSCGGGBT-TCCSHHHHHHHHTTCCSSCCHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHcCCCCCcEEEEeCCCC--CCCCHHHHHhhCCCCCcc-cCCCccchhhhhcCCCCCCCCcHHH
Confidence 4788899999999999885544322 1233442 133333222322211111 23333 33456788
Q ss_pred HHHHHHHHHHHHHHhhCCCcc
Q psy7866 69 RLESLLNFQTMVSDLTGLSVA 89 (109)
Q Consensus 69 ~Lq~l~e~q~~l~eltGmd~~ 89 (109)
.++++-++. |.|-.++
T Consensus 139 v~~lL~~~~-----l~Gk~vv 154 (276)
T 3ngx_A 139 VIDIMDYYG-----YHENTVT 154 (276)
T ss_dssp HHHHHHHHT-----CCSCEEE
T ss_pred HHHHHHHhC-----cCCCEEE
Confidence 888888775 5565543
No 56
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.80 E-value=41 Score=20.15 Aligned_cols=18 Identities=11% Similarity=0.408 Sum_probs=15.7
Q ss_pred CCCcCCCHHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQSI 20 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~l 20 (109)
+||..++|.+|.++|.+.
T Consensus 16 nLp~~~t~~~l~~~F~~~ 33 (99)
T 2div_A 16 DLEPYMDENFISRAFATM 33 (99)
T ss_dssp SCCTTCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHh
Confidence 689889999999999764
No 57
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.12 E-value=47 Score=20.13 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.8
Q ss_pred CCCcCCCHHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQSI 20 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~l 20 (109)
+||..++|.+|.++|.+.
T Consensus 22 nlp~~~t~~~l~~~F~~~ 39 (103)
T 2cqi_A 22 NLSRDVTEVLILQLFSQI 39 (103)
T ss_dssp SCCTTCCHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHhc
Confidence 689889999999999765
No 58
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.05 E-value=47 Score=20.01 Aligned_cols=18 Identities=11% Similarity=0.139 Sum_probs=15.8
Q ss_pred CCCcCCCHHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQSI 20 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~l 20 (109)
+||..++|.+|.++|.+.
T Consensus 19 nLp~~~t~~~l~~~f~~~ 36 (102)
T 1x5s_A 19 GLSFDTNEQSLEQVFSKY 36 (102)
T ss_dssp SCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhc
Confidence 689889999999999764
No 59
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=28.04 E-value=43 Score=21.42 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=22.8
Q ss_pred CCCCcCC-CHHHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYL-GEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~l-sE~ev~rh~~~ls~~N~~~~~ 29 (109)
|++|..- |..||.+.|.+|+.+-+.|..
T Consensus 21 Lgv~~~a~s~~eIk~aYr~l~~~~HPDk~ 49 (109)
T 2qsa_A 21 LEVNREEFDKQKLAKAYRALARKHHPDRV 49 (109)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHHTCGGGC
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 5666656 999999999999998876643
No 60
>2o34_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: MSE; 1.95A {Desulfovibrio vulgaris} SCOP: d.96.2.2
Probab=27.76 E-value=44 Score=25.37 Aligned_cols=31 Identities=10% Similarity=0.075 Sum_probs=21.0
Q ss_pred hHHHhcCCCccccCCCCCch-hhhhHHHHHHH
Q psy7866 45 QRNLFENPGWVTQYTPYQPE-IAQGRLESLLN 75 (109)
Q Consensus 45 ~~~ia~~~~f~t~yhPyQpe-~sQG~Lq~l~e 75 (109)
-+.+..+|+|.+++.|+.+. ..-...+-|.+
T Consensus 61 ~~~i~~~p~f~~sl~p~~~~~~ap~i~~~M~~ 92 (250)
T 2o34_A 61 KVWMEFQPAFRHSLVPVEVPEGAPEVVRRMAH 92 (250)
T ss_dssp HHHHHHSTTTTTCSSCCCCCTTSCHHHHHHHH
T ss_pred HHHHHhChhhhccCCCCCCCCCCCHHHHHHHH
Confidence 67778999999999998753 22334444443
No 61
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.39 E-value=48 Score=20.21 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=16.2
Q ss_pred CCCcCCCHHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQSI 20 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~l 20 (109)
+||..++|.+|.++|.+.
T Consensus 15 nLp~~~t~~~l~~~f~~~ 32 (109)
T 2dis_A 15 GIPKMKKREEILEEIAKV 32 (109)
T ss_dssp CCCTTSCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHh
Confidence 689889999999999876
No 62
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=27.32 E-value=37 Score=25.88 Aligned_cols=46 Identities=13% Similarity=0.079 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHhhccCCCCc--ccCCCCCcccchhhhHHHhcCCCc
Q psy7866 8 LGEHELLEEIQSIANKNEIWRSY--IGLGYHNCLVPTVIQRNLFENPGW 54 (109)
Q Consensus 8 lsE~ev~rh~~~ls~~N~~~~~f--~g~G~~~ky~P~vi~~~ia~~~~f 54 (109)
.|+.++++||+.+++.--...-+ +|.-+=....|.. ..++++.|.+
T Consensus 125 ~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~-~~~La~~pnI 172 (307)
T 3s5o_A 125 MSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDA-VVTLSQHPNI 172 (307)
T ss_dssp CCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHH-HHHHHTSTTE
T ss_pred CCHHHHHHHHHHHHhhcCCCEEEEeCCcccCCCCCHHH-HHHHhcCCCE
Confidence 69999999999999864221111 1321112456675 6788888877
No 63
>4fc9_B Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, all-helical bilobal; HET: MSE; 1.80A {Xanthomonas campestris PV}
Probab=27.22 E-value=42 Score=24.85 Aligned_cols=18 Identities=17% Similarity=0.195 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHHHHhhcc
Q psy7866 8 LGEHELLEEIQSIANKNE 25 (109)
Q Consensus 8 lsE~ev~rh~~~ls~~N~ 25 (109)
.||..+.|||++.|.+.-
T Consensus 110 ~seegls~hyt~vsnWKA 127 (208)
T 4fc9_B 110 PSEEGLARHYTNVSNWKA 127 (208)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhccCcCcchh
Confidence 599999999999988764
No 64
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=27.14 E-value=46 Score=20.23 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=15.9
Q ss_pred CCCcCCCHHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQSI 20 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~l 20 (109)
+||..++|.+|.++|.+.
T Consensus 20 nlp~~~t~~~l~~~F~~~ 37 (106)
T 2dgp_A 20 QIPRNLDEKDLKPLFEEF 37 (106)
T ss_dssp SCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhc
Confidence 689889999999999775
No 65
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=27.02 E-value=47 Score=20.02 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=15.7
Q ss_pred CCCcCCCHHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQSI 20 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~l 20 (109)
+||..++|.+|.++|.+.
T Consensus 7 nLp~~~t~~~l~~~F~~~ 24 (101)
T 2hvz_A 7 NLGTGAGKGELERAFSYY 24 (101)
T ss_dssp CCCSSCSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhc
Confidence 689889999999999764
No 66
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=26.87 E-value=42 Score=24.12 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhCCCccCCCCCChhhHHHHHHHhhc
Q psy7866 73 LLNFQTMVSDLTGLSVANASLLDEATAAAEAMSICH 108 (109)
Q Consensus 73 l~e~q~~l~eltGmd~~n~S~ydga~A~~ea~~ma~ 108 (109)
.||+|.-|.++.|+|.+.. -...+|++-|.
T Consensus 69 ~wElrrglN~l~~~DlVPe------P~Ii~AALrAc 98 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPE------PKIIDAALRAC 98 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCC------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCC------cHHHHHHHHHH
Confidence 5899999999999999764 23455554443
No 67
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=26.74 E-value=23 Score=22.48 Aligned_cols=27 Identities=19% Similarity=-0.032 Sum_probs=21.8
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCCCC
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~~~ 29 (109)
+++...|+.||.+-|.+|+.+...|.+
T Consensus 23 gv~~~as~~eIKkaYrkla~~~HPDk~ 49 (88)
T 1iur_A 23 EQAWKLPESERKKIIRRLYLKWHPDKN 49 (88)
T ss_dssp HHTTSSCSHHHHHHHHHHHHHTCTTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 455567999999999999998887753
No 68
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.73 E-value=37 Score=20.52 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=15.0
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 22 nLp~~~t~~~l~~~F~~ 38 (99)
T 2cpd_A 22 NLMLSTSEEMIEKEFNN 38 (99)
T ss_dssp SCCTTCCHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999965
No 69
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.71 E-value=38 Score=20.16 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=14.9
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|..
T Consensus 17 nLp~~~t~~~l~~~F~~ 33 (92)
T 2dgt_A 17 NISPTCTNQELRAKFEE 33 (92)
T ss_dssp SCCSSCCHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999954
No 70
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.71 E-value=48 Score=20.03 Aligned_cols=17 Identities=12% Similarity=0.071 Sum_probs=15.1
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|..
T Consensus 16 nLp~~~t~~~l~~~F~~ 32 (104)
T 2dhg_A 16 DLTPDVDDGMLYEFFVK 32 (104)
T ss_dssp CCCTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 68988999999999965
No 71
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=26.54 E-value=2.6e+02 Score=22.66 Aligned_cols=97 Identities=11% Similarity=0.035 Sum_probs=54.1
Q ss_pred CCc-CCCHHHHHHHHHHHHhhccC-CCCcccCCC----------CC---cccchhhhHHHhcCCCccccCCCCCchhhhh
Q psy7866 4 FDM-YLGEHELLEEIQSIANKNEI-WRSYIGLGY----------HN---CLVPTVIQRNLFENPGWVTQYTPYQPEIAQG 68 (109)
Q Consensus 4 LPe-~lsE~ev~rh~~~ls~~N~~-~~~f~g~G~----------~~---ky~P~vi~~~ia~~~~f~t~yhPyQpe~sQG 68 (109)
||| ++||.+|...+.+++..... ...-+|.|= +. -|+|-+ +...+|+++ .| -...+-+
T Consensus 23 ~p~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv~~~~~~~r~~g~~hg~-----~~~~d~l~~-~~-~~~~~~~ 95 (450)
T 3bc8_A 23 CPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGI-----GRSGDISAV-QP-KAAGSSL 95 (450)
T ss_dssp CCSSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCB-----CC--------CC-SBHHHHH
T ss_pred CCccCCCHHHHHHHHHHHhhCCCCccccccccCcccceEecccccCCccceecch-----hHHHHHHHh-Cc-cccCCcH
Confidence 554 67999999999999886543 222233331 11 133331 222356554 23 2223555
Q ss_pred HHHHHHHHHHHHHHhhCCCccCC-CCCChhhHHHHHHHhh
Q psy7866 69 RLESLLNFQTMVSDLTGLSVANA-SLLDEATAAAEAMSIC 107 (109)
Q Consensus 69 ~Lq~l~e~q~~l~eltGmd~~n~-S~ydga~A~~ea~~ma 107 (109)
.-+.--++..++.++.|++.... -+-.|+|+.+.++.|+
T Consensus 96 ~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~ 135 (450)
T 3bc8_A 96 LNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFL 135 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHH
Confidence 66667778888999999986544 4556777666665553
No 72
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=26.48 E-value=53 Score=19.98 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=15.6
Q ss_pred CCCcCCCHHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQSI 20 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~l 20 (109)
+||..++|.+|.++|...
T Consensus 18 nl~~~~t~~~l~~~F~~~ 35 (103)
T 2dgu_A 18 NLANTVTEEILEKAFSQF 35 (103)
T ss_dssp CCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhc
Confidence 689889999999999764
No 73
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=26.47 E-value=50 Score=23.95 Aligned_cols=42 Identities=17% Similarity=0.052 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHHHHHHhhCCCccCCCCCChhhHHHHHHHhh
Q psy7866 66 AQGRLESLLNFQTMVSDLTGLSVANASLLDEATAAAEAMSIC 107 (109)
Q Consensus 66 sQG~Lq~l~e~q~~l~eltGmd~~n~S~ydga~A~~ea~~ma 107 (109)
+++..+.+-++++.++++.|.+.-++-+-.|++...+.++.+
T Consensus 38 ~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~ 79 (382)
T 4eb5_A 38 GFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIG 79 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHH
Confidence 566778889999999999998755555666777777766554
No 74
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=26.41 E-value=38 Score=19.96 Aligned_cols=17 Identities=12% Similarity=0.136 Sum_probs=15.0
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 15 nlp~~~t~~~l~~~f~~ 31 (92)
T 2dgv_A 15 NLPFDFTWKMLKDKFNE 31 (92)
T ss_dssp SCCTTCCHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999965
No 75
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=26.14 E-value=31 Score=19.56 Aligned_cols=17 Identities=12% Similarity=0.042 Sum_probs=14.8
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 7 nlp~~~t~~~l~~~F~~ 23 (77)
T 1uaw_A 7 GLSWQTTQEGLREYFGQ 23 (77)
T ss_dssp SCCSSCCSHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999954
No 76
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=26.13 E-value=87 Score=23.64 Aligned_cols=46 Identities=22% Similarity=0.090 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHhhccCCCCc--ccCCCCCcccchhhhHHHhcCCCc
Q psy7866 8 LGEHELLEEIQSIANKNEIWRSY--IGLGYHNCLVPTVIQRNLFENPGW 54 (109)
Q Consensus 8 lsE~ev~rh~~~ls~~N~~~~~f--~g~G~~~ky~P~vi~~~ia~~~~f 54 (109)
.|+.++++||+.+++.--...-+ +|.=+=...-|.. ..+++..|.+
T Consensus 113 ~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~-~~~La~~pnI 160 (300)
T 3eb2_A 113 LKDAQIESYFRAIADAVEIPVVIYTNPQFQRSDLTLDV-IARLAEHPRI 160 (300)
T ss_dssp CCHHHHHHHHHHHHHHCSSCEEEEECTTTCSSCCCHHH-HHHHHTSTTE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECccccCCCCCHHH-HHHHHcCCCE
Confidence 49999999999999875321111 2322222566775 6888888877
No 77
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=25.98 E-value=34 Score=19.90 Aligned_cols=17 Identities=0% Similarity=0.065 Sum_probs=14.7
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 13 nlp~~~t~~~l~~~F~~ 29 (87)
T 3bs9_A 13 DLSPEITTAAIAAAFAP 29 (87)
T ss_dssp SCCTTCCHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999954
No 78
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=25.96 E-value=45 Score=19.15 Aligned_cols=17 Identities=6% Similarity=0.339 Sum_probs=14.7
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 8 nlp~~~t~~~l~~~f~~ 24 (83)
T 3md1_A 8 DLNVNVDDETLRNAFKD 24 (83)
T ss_dssp CCCTTCCHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68998999999999943
No 79
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.94 E-value=40 Score=20.03 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=15.0
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|..
T Consensus 12 nLp~~~t~~~l~~~F~~ 28 (96)
T 1x5t_A 12 NLDPEIDEKLLYDTFSA 28 (96)
T ss_dssp CCCTTCCHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999965
No 80
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=25.78 E-value=41 Score=19.49 Aligned_cols=17 Identities=6% Similarity=0.219 Sum_probs=14.9
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|..
T Consensus 11 nlp~~~t~~~l~~~F~~ 27 (88)
T 4a8x_A 11 RLTRNVTKDHIMEIFST 27 (88)
T ss_dssp CCCTTCCHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999954
No 81
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=25.66 E-value=85 Score=19.20 Aligned_cols=26 Identities=0% Similarity=-0.028 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHhhccCCCCcccC
Q psy7866 8 LGEHELLEEIQSIANKNEIWRSYIGL 33 (109)
Q Consensus 8 lsE~ev~rh~~~ls~~N~~~~~f~g~ 33 (109)
-|..||.+||..|-..-....+.+|+
T Consensus 43 Rt~~eV~~~y~~L~~d~~~~~G~vp~ 68 (72)
T 2cqq_A 43 RSVTDVTTKAKQLKDSVTCSPGMVSG 68 (72)
T ss_dssp SCHHHHHHHHHHHHHSCCCCSCCCSC
T ss_pred CCHHHHHHHHHHHHHhcCccCCCCCC
Confidence 58899999999996553224444443
No 82
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.51 E-value=53 Score=19.75 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=15.0
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 26 nL~~~~t~~~l~~~F~~ 42 (97)
T 2e5j_A 26 NLPRDARVSDLKRALRE 42 (97)
T ss_dssp CCCTTCCHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHh
Confidence 68988999999999965
No 83
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=25.49 E-value=56 Score=19.68 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=17.0
Q ss_pred CCCcCCCHHHHHHHHHHHHh
Q psy7866 3 NFDMYLGEHELLEEIQSIAN 22 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~ 22 (109)
+||..++|.+|.++|.+.-.
T Consensus 24 nLp~~~t~~~l~~~F~~~G~ 43 (101)
T 1fj7_A 24 NLNPNKSVAELKVAISELFA 43 (101)
T ss_dssp CCCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCC
Confidence 68988999999999987654
No 84
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=25.35 E-value=75 Score=24.16 Aligned_cols=46 Identities=9% Similarity=-0.044 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHhhccCCCC--cccCCCCCcccchhhhHHHhc-CCCcc
Q psy7866 8 LGEHELLEEIQSIANKNEIWRS--YIGLGYHNCLVPTVIQRNLFE-NPGWV 55 (109)
Q Consensus 8 lsE~ev~rh~~~ls~~N~~~~~--f~g~G~~~ky~P~vi~~~ia~-~~~f~ 55 (109)
.|+.++++||+.+++.--...- -+|. +-....|.. ..++++ .|.+.
T Consensus 120 ~s~~~l~~~f~~va~a~~lPiilYn~P~-tg~~l~~~~-~~~La~~~pnIv 168 (309)
T 3fkr_A 120 VPEAQIFEFYARVSDAIAIPIMVQDAPA-SGTALSAPF-LARMAREIEQVA 168 (309)
T ss_dssp CCHHHHHHHHHHHHHHCSSCEEEEECGG-GCCCCCHHH-HHHHHHHSTTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCCCHHH-HHHHHhhCCCEE
Confidence 5999999999999987532111 1353 333567776 688985 78873
No 85
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.25 E-value=41 Score=20.14 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=14.8
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|..
T Consensus 12 nLp~~~t~~~l~~~F~~ 28 (98)
T 2cpf_A 12 NLNFSTTEETLKGVFSK 28 (98)
T ss_dssp SCCTTCCHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999954
No 86
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.16 E-value=41 Score=20.49 Aligned_cols=17 Identities=12% Similarity=0.090 Sum_probs=15.1
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 23 nlp~~~t~~~l~~~F~~ 39 (105)
T 2dh8_A 23 GLDWSTTQETLRSYFSQ 39 (105)
T ss_dssp SCCTTCCHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999965
No 87
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=24.96 E-value=47 Score=19.35 Aligned_cols=17 Identities=6% Similarity=0.114 Sum_probs=14.8
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|..
T Consensus 18 nlp~~~t~~~l~~~F~~ 34 (87)
T 3s7r_A 18 GLSWDTSKKDLKDYFTK 34 (87)
T ss_dssp CCCTTCCHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999954
No 88
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.74 E-value=44 Score=19.78 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=14.8
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 15 nlp~~~t~~~l~~~F~~ 31 (90)
T 2dnq_A 15 NLPREATEQEIRSLFEQ 31 (90)
T ss_dssp SCCSSCCHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999954
No 89
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=24.24 E-value=39 Score=22.38 Aligned_cols=28 Identities=0% Similarity=-0.200 Sum_probs=23.2
Q ss_pred CCCCcCCCH--HHHHHHHHHHHhhccCCCC
Q psy7866 2 TNFDMYLGE--HELLEEIQSIANKNEIWRS 29 (109)
Q Consensus 2 l~LPe~lsE--~ev~rh~~~ls~~N~~~~~ 29 (109)
|+||..-+. .||.+.|.+|+.+.+.|.+
T Consensus 14 Lgv~~~as~~~~eIk~aYr~la~~~HPDk~ 43 (114)
T 1gh6_A 14 LGLERSAWGNIPLMRKAYLKKCKEFHPDKG 43 (114)
T ss_dssp TTCCTTSCSCHHHHHHHHHHTTTTCCTTTC
T ss_pred cCCCCCCCcCHHHHHHHHHHHHHHHCCCCC
Confidence 677776777 9999999999999887763
No 90
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.15 E-value=45 Score=20.74 Aligned_cols=17 Identities=6% Similarity=0.049 Sum_probs=15.1
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 24 nlp~~~t~~~l~~~F~~ 40 (116)
T 2cqd_A 24 GLPYHTTDASLRKYFEG 40 (116)
T ss_dssp CCCSSCCHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999965
No 91
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=24.09 E-value=85 Score=24.58 Aligned_cols=72 Identities=11% Similarity=0.042 Sum_probs=39.4
Q ss_pred CCCcCCCHHHHHHHHHHHHhhccCC--CCcccCCCCCcccchhhhHHHhcCCCccccCCC------------CCchhhhh
Q psy7866 3 NFDMYLGEHELLEEIQSIANKNEIW--RSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTP------------YQPEIAQG 68 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N~~~--~~f~g~G~~~ky~P~vi~~~ia~~~~f~t~yhP------------yQpe~sQG 68 (109)
.||+..||.|+++.+.+|-+....+ .-++|+- .|.+..-|.+.|.-.-.- ..+|| +-|-+..|
T Consensus 89 ~lp~~~se~ell~~I~~LN~D~~V~GIlVQlPLP--~hid~~~i~~~I~p~KDV-DG~hp~N~G~L~~g~~~~~PcTp~g 165 (303)
T 4b4u_A 89 ELPQETTTEQLLAEIEKLNANPDVHGILLQHPVP--AQIDERACFDAISLAKDV-DGVTCLGFGRMAMGEAAYGSATPAG 165 (303)
T ss_dssp EECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCC--TTSCHHHHHHHSCGGGCT-TCCCHHHHHHHHTTCCCCCCHHHHH
T ss_pred ecCccCCHHHHHHHHHHhcCCCCccEEEEeCCCc--cccChHHHHhccCccccc-CccCcchHHHhcCCCCcccCccHHH
Confidence 4788899999999998885433322 1234442 233433333333322221 33333 34456678
Q ss_pred HHHHHHHHH
Q psy7866 69 RLESLLNFQ 77 (109)
Q Consensus 69 ~Lq~l~e~q 77 (109)
.++.|-.|.
T Consensus 166 v~~lL~~~~ 174 (303)
T 4b4u_A 166 IMTILKENN 174 (303)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHC
Confidence 777776653
No 92
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.02 E-value=46 Score=19.65 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=14.8
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 22 nlp~~~t~~~l~~~f~~ 38 (95)
T 2cqc_A 22 GLSLYTTERDLREVFSK 38 (95)
T ss_dssp SCCSSCCHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999954
No 93
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=24.00 E-value=90 Score=24.17 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=17.5
Q ss_pred CCCcCCCHHHHHHHHHHHHhh
Q psy7866 3 NFDMYLGEHELLEEIQSIANK 23 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~ 23 (109)
.||+..||.|+++.+.+|-+.
T Consensus 69 ~lp~~~s~~ell~~I~~lN~D 89 (288)
T 1b0a_A 69 DLPETTSEAELLELIDTLNAD 89 (288)
T ss_dssp EECTTCCHHHHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHHhcCC
Confidence 489889999999999888443
No 94
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.98 E-value=58 Score=19.99 Aligned_cols=18 Identities=6% Similarity=0.086 Sum_probs=15.7
Q ss_pred CCCcCCCHHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQSI 20 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~l 20 (109)
+||..++|.+|.++|.+.
T Consensus 32 nl~~~~t~~~l~~~F~~~ 49 (109)
T 1x4g_A 32 GIASGLTDQLMRQTFSPF 49 (109)
T ss_dssp CCSSCCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhc
Confidence 689889999999999664
No 95
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=23.96 E-value=91 Score=22.81 Aligned_cols=43 Identities=5% Similarity=-0.048 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHHHHHHhhCCCccCCCCCChhhHHHHHHHhhc
Q psy7866 66 AQGRLESLLNFQTMVSDLTGLSVANASLLDEATAAAEAMSICH 108 (109)
Q Consensus 66 sQG~Lq~l~e~q~~l~eltGmd~~n~S~ydga~A~~ea~~ma~ 108 (109)
..+.-+..-++++.++++.|.+.-++-+-.|++...+.++.++
T Consensus 58 ~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l 100 (400)
T 3vax_A 58 GIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGL 100 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHH
Confidence 4566778889999999999998666777788887777666543
No 96
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=23.69 E-value=51 Score=19.19 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=15.0
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|..
T Consensus 13 nlp~~~t~~~l~~~F~~ 29 (89)
T 3ucg_A 13 NVDYGATAEELEAHFHG 29 (89)
T ss_dssp SCCTTCCHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999964
No 97
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.09 E-value=40 Score=20.72 Aligned_cols=17 Identities=6% Similarity=0.102 Sum_probs=14.8
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 29 nLp~~~t~~~l~~~F~~ 45 (109)
T 1x4a_A 29 NLPPDIRTKDIEDVFYK 45 (109)
T ss_dssp SCCTTCCHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999954
No 98
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.01 E-value=47 Score=20.27 Aligned_cols=17 Identities=29% Similarity=0.260 Sum_probs=14.9
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 22 nLp~~~t~~~l~~~F~~ 38 (111)
T 1x4h_A 22 NLSFDSEEEALGEVLQQ 38 (111)
T ss_dssp SCCTTCCHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999954
No 99
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.76 E-value=50 Score=19.76 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=14.9
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|..
T Consensus 15 nlp~~~t~~~l~~~F~~ 31 (99)
T 1whw_A 15 NLSYTSSEEDLEKLFSA 31 (99)
T ss_dssp CCCTTCCHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999954
No 100
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=22.67 E-value=55 Score=19.45 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.7
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 23 nL~~~~t~~~l~~~F~~ 39 (96)
T 1fjc_A 23 NLSFNITEDELKEVFED 39 (96)
T ss_dssp SCCSSCCHHHHHHHHCS
T ss_pred CCCCCCCHHHHHHHHhh
Confidence 68988999999999954
No 101
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=22.51 E-value=57 Score=18.76 Aligned_cols=17 Identities=6% Similarity=0.048 Sum_probs=14.7
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 14 nl~~~~~~~~l~~~f~~ 30 (85)
T 3mdf_A 14 GLAEEVDDKVLHAAFIP 30 (85)
T ss_dssp CCCTTCCHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHhc
Confidence 68988999999999954
No 102
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.41 E-value=54 Score=19.69 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=14.7
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 24 nlp~~~t~~~l~~~F~~ 40 (100)
T 2do4_A 24 GLPFSCTKEELEEICKA 40 (100)
T ss_dssp SCCTTCCHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999954
No 103
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=22.35 E-value=50 Score=19.90 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.7
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 34 nlp~~~~~~~l~~~f~~ 50 (101)
T 2la4_A 34 NIPHFATEADLIPLFQN 50 (101)
T ss_dssp SCCTTCCHHHHHHHHHT
T ss_pred CCCcccCHHHHHHHHHh
Confidence 68888999999999954
No 104
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.23 E-value=50 Score=20.00 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=14.9
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|..
T Consensus 22 nlp~~~t~~~l~~~F~~ 38 (107)
T 2cph_A 22 NIPFQANQREIRELFST 38 (107)
T ss_dssp SCCTTCCHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHHHc
Confidence 68988999999999955
No 105
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=22.13 E-value=51 Score=19.71 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=14.9
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 9 nLp~~~t~~~l~~~F~~ 25 (96)
T 2x1f_A 9 SIPYDQTEEQILDLCSN 25 (96)
T ss_dssp SCCTTCCHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999964
No 106
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.07 E-value=52 Score=19.91 Aligned_cols=18 Identities=22% Similarity=0.147 Sum_probs=15.4
Q ss_pred CCCcCCCHHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQSI 20 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~l 20 (109)
+||..++|.+|.++|.+.
T Consensus 22 nlp~~~t~~~l~~~F~~~ 39 (105)
T 1x5u_A 22 GLDEKVSEPLLWELFLQA 39 (105)
T ss_dssp CCCTTCCHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHhc
Confidence 689889999999999653
No 107
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.04 E-value=40 Score=19.87 Aligned_cols=17 Identities=24% Similarity=0.108 Sum_probs=14.6
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 12 nLp~~~te~~l~~~F~~ 28 (88)
T 1wf0_A 12 RCTGDMTEDELREFFSQ 28 (88)
T ss_dssp SCCSSSCHHHHHHHSTT
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 68998999999999843
No 108
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=22.00 E-value=52 Score=19.55 Aligned_cols=18 Identities=22% Similarity=0.517 Sum_probs=15.4
Q ss_pred CCCcCCCHHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQSI 20 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~l 20 (109)
+||..++|.+|.++|...
T Consensus 8 nL~~~~t~~~l~~~F~~~ 25 (90)
T 3p5t_L 8 NLTWWTTDEDLTEAVHSL 25 (90)
T ss_dssp SCCTTCCHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHh
Confidence 689889999999999653
No 109
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=21.98 E-value=58 Score=19.23 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.7
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|..
T Consensus 23 nlp~~~~~~~l~~~F~~ 39 (95)
T 2ywk_A 23 NLEARVREEILYELFLQ 39 (95)
T ss_dssp CCCTTCCHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999954
No 110
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.76 E-value=51 Score=19.85 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=14.9
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|..
T Consensus 15 nlp~~~~~~~l~~~f~~ 31 (104)
T 1p1t_A 15 NIPYEATEEQLKDIFSE 31 (104)
T ss_dssp SCCTTSCHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHHHh
Confidence 68988999999999964
No 111
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=21.72 E-value=1.1e+02 Score=21.33 Aligned_cols=31 Identities=35% Similarity=0.413 Sum_probs=23.2
Q ss_pred HHHHHHHHhhCCCccCCCCCChhhHHHHHHHhh
Q psy7866 75 NFQTMVSDLTGLSVANASLLDEATAAAEAMSIC 107 (109)
Q Consensus 75 e~q~~l~eltGmd~~n~S~ydga~A~~ea~~ma 107 (109)
+.|.|++.+.|++... .. |.|.|++=|+.-+
T Consensus 120 qV~~mv~~ll~l~~~p-~~-DaADALAiAi~h~ 150 (158)
T 1hjr_A 120 QVQHMVRTLLKLPANP-QA-DAADALAIAITHC 150 (158)
T ss_dssp HHHHHHHHHTTCCCCC-SS-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCC-CC-CHHHHHHHHHHHH
Confidence 3667888898987654 34 9999998887654
No 112
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.71 E-value=61 Score=19.09 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=15.4
Q ss_pred CCCcCCCHHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQSI 20 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~l 20 (109)
+||..++|.+|.++|...
T Consensus 17 nLp~~~t~~~l~~~F~~~ 34 (91)
T 2dgw_A 17 GAPFNVTEKNVMEFLAPL 34 (91)
T ss_dssp CCCSSCCHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHhhC
Confidence 689889999999999553
No 113
>3ueb_A Putative uncharacterized protein; alpha and beta protein (A+B), unknown function; 1.98A {Thermococcus onnurineus}
Probab=21.51 E-value=42 Score=22.62 Aligned_cols=20 Identities=30% Similarity=0.518 Sum_probs=14.9
Q ss_pred CCCcCCCHHHHHHHHHHHHhhc
Q psy7866 3 NFDMYLGEHELLEEIQSIANKN 24 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ls~~N 24 (109)
.||+ +||.++++ .-+|+|+.
T Consensus 14 GLPe-LsEe~lie-iGelaQ~~ 33 (110)
T 3ueb_A 14 GLPE-LSEEQLIE-IGELAQET 33 (110)
T ss_dssp ECTT-SCHHHHHH-HHHHHHHH
T ss_pred cCCc-cCHHHHHH-HHHHHHHH
Confidence 5999 99999875 45666654
No 114
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=20.79 E-value=1.1e+02 Score=23.43 Aligned_cols=46 Identities=7% Similarity=-0.089 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHhhccCCCCc--ccCCC-CCcccchhhhHHHhc-CCCc
Q psy7866 8 LGEHELLEEIQSIANKNEIWRSY--IGLGY-HNCLVPTVIQRNLFE-NPGW 54 (109)
Q Consensus 8 lsE~ev~rh~~~ls~~N~~~~~f--~g~G~-~~ky~P~vi~~~ia~-~~~f 54 (109)
.|+.++++||+.+++.--...-+ +|.=+ -....|.. ..++++ .|.+
T Consensus 122 ~~~~~l~~~f~~ia~a~~lPiilYn~P~~t~g~~l~~~~-~~~La~~~pnI 171 (318)
T 3qfe_A 122 TTPPVIKSFFDDVSCQSPLPVVIYNFPGVCNGIDLDSDM-ITTIARKNPNV 171 (318)
T ss_dssp CCHHHHHHHHHHHHHHCSSCEEEEECCC----CCCCHHH-HHHHHHHCTTE
T ss_pred CCHHHHHHHHHHHHhhCCCCEEEEeCCcccCCCCCCHHH-HHHHHhhCCCE
Confidence 68999999999999865322112 23312 12455775 688887 7877
No 115
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=20.66 E-value=50 Score=19.54 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=14.5
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.||.++|.+
T Consensus 22 nlp~~~t~~~l~~~F~~ 38 (95)
T 2ek1_A 22 NMPFTVSIDEILDFFYG 38 (95)
T ss_dssp CCCTTCCHHHHHHHTTT
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999843
No 116
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=20.59 E-value=74 Score=20.48 Aligned_cols=18 Identities=11% Similarity=0.237 Sum_probs=16.6
Q ss_pred CCCcCCCHHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQSI 20 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~l 20 (109)
+||..++|.+|.++|.+.
T Consensus 11 nLp~~~t~~~l~~~F~~~ 28 (172)
T 2g4b_A 11 NIPFGITEEAMMDFFNAQ 28 (172)
T ss_dssp SCCTTCCHHHHHHHHHHH
T ss_pred CCCcccCHHHHHHHHHHH
Confidence 689999999999999887
No 117
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.39 E-value=65 Score=19.29 Aligned_cols=17 Identities=29% Similarity=0.301 Sum_probs=14.7
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 17 nlp~~~t~~~l~~~F~~ 33 (99)
T 2dgs_A 17 GIPHNCGETELREYFKK 33 (99)
T ss_dssp SCCSSCCHHHHHHHHSS
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999944
No 118
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.36 E-value=64 Score=19.02 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=14.7
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 12 nlp~~~t~~~l~~~f~~ 28 (95)
T 2dnz_A 12 SLHFNITEDMLRGIFEP 28 (95)
T ss_dssp SCCTTCCHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999954
No 119
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.35 E-value=49 Score=19.55 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=14.6
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 23 nlp~~~t~~~l~~~f~~ 39 (94)
T 2e5h_A 23 NLPFSLTNNDLYRIFSK 39 (94)
T ss_dssp SCCTTSCHHHHHHHTTT
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999954
No 120
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=20.25 E-value=51 Score=19.48 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=14.6
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|.++|.+
T Consensus 12 nLp~~~t~~~l~~~F~~ 28 (88)
T 1wg1_A 12 NLPQDSNCQEVHDLLKD 28 (88)
T ss_dssp SCCSSCCHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHhh
Confidence 68988999999999854
No 121
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=20.19 E-value=32 Score=23.00 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhCCCccCCCCCC
Q psy7866 73 LLNFQTMVSDLTGLSVANASLLD 95 (109)
Q Consensus 73 l~e~q~~l~eltGmd~~n~S~yd 95 (109)
+.+|..-|+++.|-+.+|.|+++
T Consensus 21 i~d~A~~l~~~~gV~gVnItv~E 43 (97)
T 2raq_A 21 IPEYAKYLSELRGVEGVNITLME 43 (97)
T ss_dssp HHHHHHHHHHSTTCCEEEEEEEE
T ss_pred HHHHHHHHHhCCCcceEEEEEEE
Confidence 46799999999999999998864
No 122
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=20.16 E-value=50 Score=23.64 Aligned_cols=62 Identities=8% Similarity=0.065 Sum_probs=41.1
Q ss_pred cccchhhhHHHhcCCCccccCCCCCchhhhhHHHHHHHHHHHHHHhhCCCccCCCCCChhhHHHHHHHhhc
Q psy7866 38 CLVPTVIQRNLFENPGWVTQYTPYQPEIAQGRLESLLNFQTMVSDLTGLSVANASLLDEATAAAEAMSICH 108 (109)
Q Consensus 38 ky~P~vi~~~ia~~~~f~t~yhPyQpe~sQG~Lq~l~e~q~~l~eltGmd~~n~S~ydga~A~~ea~~ma~ 108 (109)
+-.|.+ .+.+.+. +..|.+ .+|.-+..-++.++++++.|.+..+.-+-.|++...+.++.++
T Consensus 25 ~~~~~v-~~a~~~~---~~~~~~-----~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~ 86 (359)
T 1svv_A 25 GMHPKI-LDLMARD---NMTQHA-----GYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLA 86 (359)
T ss_dssp CCCHHH-HHHHHHH---TTCCCC-----STTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHH
T ss_pred CCCHHH-HHHHHHH---Hhhccc-----cccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHH
Confidence 455664 6776653 223332 3456667788999999999977656666778887777666543
No 123
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.04 E-value=65 Score=19.85 Aligned_cols=17 Identities=6% Similarity=0.046 Sum_probs=14.8
Q ss_pred CCCcCCCHHHHHHHHHH
Q psy7866 3 NFDMYLGEHELLEEIQS 19 (109)
Q Consensus 3 ~LPe~lsE~ev~rh~~~ 19 (109)
+||..++|.+|..+|..
T Consensus 22 nLp~~~t~~~l~~~F~~ 38 (108)
T 1x4c_A 22 GLPPSGSWQDLKDHMRE 38 (108)
T ss_dssp SCCSSCCHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 68988999999999954
Done!