RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7866
(109 letters)
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2)
tetramer, riken structural genomics/proteomi initiative,
RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP:
c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Length = 438
Score = 187 bits (476), Expect = 2e-59
Identities = 41/103 (39%), Positives = 68/103 (66%), Gaps = 2/103 (1%)
Query: 8 LGEHELLEEIQSIANKN-EIWRSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTPYQPEIA 66
L E ++LEE++ +A +N ++++G G + VP V+ + L ++T YTPYQPE++
Sbjct: 45 LPEWKVLEELRRLAAQNLPAHKAFLGGGVRSHHVPPVV-QALAARGEFLTAYTPYQPEVS 103
Query: 67 QGRLESLLNFQTMVSDLTGLSVANASLLDEATAAAEAMSICHR 109
QG L++ +QTM+++L GL +ANAS+ D ATA AE + + R
Sbjct: 104 QGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR 146
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 7e-05
Identities = 27/138 (19%), Positives = 45/138 (32%), Gaps = 44/138 (31%)
Query: 5 DMYLGEHELLEEIQSIANKN--------------EIWRSYIGLGYHNCLVPTVIQRNL-- 48
D + + I I N I +Y + + + + +
Sbjct: 1650 DNHFKDT-YGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 49 ----------FENPGWV---TQYTPYQPEIAQGRLESLLNFQTMVSDLTGLSVANASL-- 93
F + + TQ+T QP + L F+ + S GL A+A+
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFT--QPALT---LMEKAAFEDLKSK--GLIPADATFAG 1761
Query: 94 --LDE--ATAA-AEAMSI 106
L E A A+ A+ MSI
Sbjct: 1762 HSLGEYAALASLADVMSI 1779
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 26.7 bits (60), Expect = 1.3
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 9/42 (21%)
Query: 12 ELLEEIQSIANKNE-------IWR--SYIGLGYHNCLVPTVI 44
+L +E++++A + + I R G N T I
Sbjct: 62 QLEQEMKTLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATRI 103
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle,
signaling protein; 2.60A {Escherichia coli} SCOP:
h.4.5.1
Length = 227
Score = 26.4 bits (59), Expect = 1.6
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 90 NASLLDEATAAAEAM 104
NA+L++++ AAA A+
Sbjct: 194 NAALVEQSAAAAAAL 208
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP
domain, TSR receptor, fusion; 2.65A {Archaeoglobus
fulgidus}
Length = 341
Score = 26.6 bits (59), Expect = 1.6
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 90 NASLLDEATAAAEAM 104
NA+L++E+ AAA A+
Sbjct: 274 NAALVEESAAAAAAL 288
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A
{Helicobacter pylori} PDB: 3juj_A*
Length = 281
Score = 26.3 bits (59), Expect = 1.9
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 8/32 (25%)
Query: 9 GEHELLEEIQSIANKNEIWRSYI------GLG 34
+ L+ I++I K SY+ GLG
Sbjct: 80 NKENALKSIRNIIEKCCF--SYVRQKQMKGLG 109
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2)
tetramer, riken structural genomics/proteomi initiative,
RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP:
c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Length = 474
Score = 26.0 bits (58), Expect = 2.7
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 60 PYQP-EIAQGRLESLLNFQTMVSDLTGL 86
PYQ AQG L + + LTG+
Sbjct: 95 PYQDPRTAQGALRLMWELGEYLKALTGM 122
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 24.8 bits (54), Expect = 7.7
Identities = 5/60 (8%), Positives = 14/60 (23%), Gaps = 6/60 (10%)
Query: 10 EHELLEEIQSIANKNEIWRSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTPYQPEIAQGR 69
++ E ++ + ++ + + N F P P
Sbjct: 29 TDVIILEKGTVGHS---FKHWPK---STRTITPSFTSNGFGMPDMNAISMDTSPAFTFNE 82
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase,
nucleotidyltransferase, metabolism; HET: GUD; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 323
Score = 24.4 bits (54), Expect = 9.4
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 8/32 (25%)
Query: 9 GEHELLEEIQSIANKNEIWRSYI------GLG 34
G+ + +E I+ A+ + + GLG
Sbjct: 90 GKTDQVEIIRRAADLIKA--VPVTQDKPLGLG 119
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA,
structural genomics, PSI-2, midwest center for
structural G MCSG; 3.10A {Geobacter sulfurreducens}
Length = 181
Score = 24.2 bits (53), Expect = 9.8
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 74 LNFQTMVSDLTGLSVANASLLDEATAAAEA 103
+ F +++++L ++ + + AAEA
Sbjct: 150 IYFVSIIANLILTAIKLRQQVASSRKAAEA 179
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.395
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,641,497
Number of extensions: 81205
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 14
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)