RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7866
         (109 letters)



>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating)
           subunit 1 {Thermus thermophilus [TaxId: 274]}
          Length = 437

 Score = 77.5 bits (190), Expect = 1e-18
 Identities = 41/103 (39%), Positives = 68/103 (66%), Gaps = 2/103 (1%)

Query: 8   LGEHELLEEIQSIANKN-EIWRSYIGLGYHNCLVPTVIQRNLFENPGWVTQYTPYQPEIA 66
           L E ++LEE++ +A +N    ++++G G  +  VP V+ + L     ++T YTPYQPE++
Sbjct: 45  LPEWKVLEELRRLAAQNLPAHKAFLGGGVRSHHVPPVV-QALAARGEFLTAYTPYQPEVS 103

Query: 67  QGRLESLLNFQTMVSDLTGLSVANASLLDEATAAAEAMSICHR 109
           QG L++   +QTM+++L GL +ANAS+ D ATA AE + +  R
Sbjct: 104 QGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR 146


>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2
           (P-protein) {Thermus thermophilus [TaxId: 274]}
          Length = 471

 Score = 73.3 bits (179), Expect = 3e-17
 Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 7/105 (6%)

Query: 8   LGEHELLEEIQSIANKNE-IWRSYIGLG-YHNCLVPTVIQRNLFENPGWVTQYTPYQP-E 64
           + E  L+     ++ +   +  ++  LG       P + +    E         PYQ   
Sbjct: 44  VDELTLVRHYTGLSRRQVGVDTTFYPLGSCTMKYNPKLHE----EAARLFADLHPYQDPR 99

Query: 65  IAQGRLESLLNFQTMVSDLTGLSVANASLLDEATAAAEAMSICHR 109
            AQG L  +      +  LTG+          A      + I   
Sbjct: 100 TAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRA 144


>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
           {Methanococcus maripaludis [TaxId: 39152]}
          Length = 434

 Score = 45.3 bits (106), Expect = 2e-07
 Identities = 9/109 (8%), Positives = 29/109 (26%), Gaps = 7/109 (6%)

Query: 8   LGEHELLEEIQSIANKN-EIWRSYIGLG--YHNCLVPTVIQR--NLFENPGWVTQYTPYQ 62
           + + ++   ++ ++  + +     + +G            +         G        Q
Sbjct: 43  IDDEKIKLFLKFLSMMDTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQ 102

Query: 63  PEIAQGRLESLLNFQ--TMVSDLTGLSVANASLLDEATAAAEAMSICHR 109
           P+ +   +   L  +         GL+V   +       +        R
Sbjct: 103 PKASGASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAAR 151


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.395 

Gapped
Lambda     K      H
   0.267   0.0454    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 394,345
Number of extensions: 15242
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 4
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.6 bits)