BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7867
(484 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4G|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
pdb|3G4G|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
pdb|3G4G|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
pdb|3G4G|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
Length = 421
Score = 466 bits (1199), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/467 (53%), Positives = 302/467 (64%), Gaps = 117/467 (25%)
Query: 1 MLNKELSHFSES----------------NKQQELDLPALRIEDSQGSDPRSGGASSKKKD 44
MLN+EL+H SE +KQ E+++P + E++ P+
Sbjct: 14 MLNRELTHLSEMSRSGNQVSEFISNTFLDKQHEVEIPKVTAEEA----PQ---------- 59
Query: 45 RGGPPGRTVPMSHISGVKRPLTHTNSFTGEKLPKHGVETASEE----------------- 87
PMS ISGVK+ L H++S T +P+ GV+T E+
Sbjct: 60 ---------PMSQISGVKK-LMHSSSLTNSSIPRFGVKTEQEDVLAKELEDVNKWGLHVF 109
Query: 88 ---ELGNNR-------------DLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAAD 131
EL NR DLLKTF IP T I ++MTLEDHY D +HN+ HAAD
Sbjct: 110 RIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAAD 169
Query: 132 VTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDES 191
V QST+VLL++PALE VFT LEI+AA+FA+ IHDVDHPG++NQFLIN++SELALMYND S
Sbjct: 170 VVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSS 229
Query: 192 VLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQN 251
VLENHHL AV FKLLQ
Sbjct: 230 VLENHHL--------------------------------------------AVGFKLLQE 245
Query: 252 EGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNY 311
E CDI NL KKQ+Q+LRKMVID+VL+TDMSKHM+LLADLKTMVETKKV SGVLLLDNY
Sbjct: 246 ENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNY 305
Query: 312 TDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSA 371
+DRIQVL+N+VHCADLSNPTKPL LYR+W D +MEEFF+QGD+ERE ++ISPMCD+ +A
Sbjct: 306 SDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNA 365
Query: 372 TIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDMLEENRDWYQNYI 418
++EKSQVGFIDYIVHPLWETWADLVHPDAQ+ILD LE+NR+WYQ+ I
Sbjct: 366 SVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQSTI 412
>pdb|3G45|A Chain A, Crystal Structure Of Human Phosphodiesterase 4b With
Regulatory Domain And D155988
pdb|3G45|B Chain B, Crystal Structure Of Human Phosphodiesterase 4b With
Regulatory Domain And D155988
Length = 421
Score = 448 bits (1153), Expect = e-126, Method: Compositional matrix adjust.
Identities = 251/455 (55%), Positives = 294/455 (64%), Gaps = 93/455 (20%)
Query: 1 MLNKELSHFSESNKQQELDLPALRIEDSQGSDPRSGGASSKKKDRGGPPGRT----VPMS 56
MLN+EL+H SE ++ +Q S+ S K+ D P PM+
Sbjct: 14 MLNRELTHLSEMSRS-----------GNQVSEYISNTFLDKQNDVEIPKVTAEEAPQPMT 62
Query: 57 HISGVKRPLTHTNSFTGEKLPKHGVETASEEELG-------------------------- 90
ISGVK+ L H++S + + GV T +E+ L
Sbjct: 63 QISGVKK-LMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLT 121
Query: 91 -------NNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSP 143
RDLLKTF I + TFI +MMTLEDHY D +HNS HAADV QST+VLL++P
Sbjct: 122 CIMYAIFQERDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTP 181
Query: 144 ALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFK 203
AL+ VFT LEI+AA+FAA IHDVDHPG++NQFLIN++SELALMYNDESVLENHHL
Sbjct: 182 ALDAVFTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHL----- 236
Query: 204 LLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKK 263
AV FKLLQ E CDI NL KK
Sbjct: 237 ---------------------------------------AVGFKLLQEEHCDIFMNLTKK 257
Query: 264 QKQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVH 323
Q+QTLRKMVIDMVL+TDMSKHMSLLADLKTMVETKKV SGVLLLDNYTDRIQVL N+VH
Sbjct: 258 QRQTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVH 317
Query: 324 CADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDY 383
CADLSNPTK L LYR+W D +MEEFFQQGDKERE ++ISPMCD+ +A++EKSQVGFIDY
Sbjct: 318 CADLSNPTKSLELYRQWTDRIMEEFFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDY 377
Query: 384 IVHPLWETWADLVHPDAQEILDMLEENRDWYQNYI 418
IVHPLWETWADLV PDAQ+ILD LE+NR+WYQ+ I
Sbjct: 378 IVHPLWETWADLVQPDAQDILDTLEDNRNWYQSMI 412
>pdb|1TB7|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Amp
pdb|1TB7|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Amp
pdb|1TBB|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Rolipram
pdb|1TBB|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Rolipram
Length = 332
Score = 441 bits (1135), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/326 (65%), Positives = 251/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF IP T I ++MTLEDHY D +HN+ HAADV QST+VLL++PALE VFT L
Sbjct: 48 RDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDL 107
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FA+ IHDVDHPG++NQFLIN++SELALMYND SVLENHHL
Sbjct: 108 EILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHL-------------- 153
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E CDI NL KKQ+Q+LRKMV
Sbjct: 154 ------------------------------AVGFKLLQEENCDIFQNLTKKQRQSLRKMV 183
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
ID+VL+TDMSKHM+LLADLKTMVETKKV SGVLLLDNY+DRIQVL+N+VHCADLSNPTK
Sbjct: 184 IDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTK 243
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
PL LYR+W D +MEEFF+QGD+ERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 244 PLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 303
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLVHPDAQ+ILD LE+NR+WYQ+ I
Sbjct: 304 ADLVHPDAQDILDTLEDNREWYQSTI 329
>pdb|3G4I|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4I|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4I|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4I|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4K|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4K|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4K|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4K|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4L|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G4L|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G4L|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G4L|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G58|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
pdb|3G58|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
pdb|3G58|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
pdb|3G58|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
Length = 381
Score = 441 bits (1135), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/326 (65%), Positives = 251/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF IP T I ++MTLEDHY D +HN+ HAADV QST+VLL++PALE VFT L
Sbjct: 53 RDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDL 112
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FA+ IHDVDHPG++NQFLIN++SELALMYND SVLENHHL
Sbjct: 113 EILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHL-------------- 158
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E CDI NL KKQ+Q+LRKMV
Sbjct: 159 ------------------------------AVGFKLLQEENCDIFQNLTKKQRQSLRKMV 188
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
ID+VL+TDMSKHM+LLADLKTMVETKKV SGVLLLDNY+DRIQVL+N+VHCADLSNPTK
Sbjct: 189 IDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTK 248
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
PL LYR+W D +MEEFF+QGD+ERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 249 PLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 308
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLVHPDAQ+ILD LE+NR+WYQ+ I
Sbjct: 309 ADLVHPDAQDILDTLEDNREWYQSTI 334
>pdb|2QYN|A Chain A, Crystal Structure Of Pde4d2 In Complex With Inhibitor Npv
pdb|2QYN|B Chain B, Crystal Structure Of Pde4d2 In Complex With Inhibitor Npv
Length = 328
Score = 441 bits (1135), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/326 (65%), Positives = 251/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF IP T I ++MTLEDHY D +HN+ HAADV QST+VLL++PALE VFT L
Sbjct: 44 RDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDL 103
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FA+ IHDVDHPG++NQFLIN++SELALMYND SVLENHHL
Sbjct: 104 EILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHL-------------- 149
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E CDI NL KKQ+Q+LRKMV
Sbjct: 150 ------------------------------AVGFKLLQEENCDIFQNLTKKQRQSLRKMV 179
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
ID+VL+TDMSKHM+LLADLKTMVETKKV SGVLLLDNY+DRIQVL+N+VHCADLSNPTK
Sbjct: 180 IDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTK 239
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
PL LYR+W D +MEEFF+QGD+ERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 240 PLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 299
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLVHPDAQ+ILD LE+NR+WYQ+ I
Sbjct: 300 ADLVHPDAQDILDTLEDNREWYQSTI 325
>pdb|1XOM|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Cilomilast
pdb|1XOM|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Cilomilast
pdb|1XON|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Piclamilast
pdb|1XON|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Piclamilast
pdb|1XOQ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Roflumilast
pdb|1XOQ|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Roflumilast
pdb|1XOR|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Zardaverine
pdb|1XOR|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Zardaverine
pdb|1Y2B|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1h-Pyrazole-4-Carboxylic Acid Ethyl
Ester
pdb|1Y2B|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1h-Pyrazole-4-Carboxylic Acid Ethyl
Ester
pdb|1Y2C|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1-Phenyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2C|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1-Phenyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2D|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Methoxy-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2D|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Methoxy-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2E|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Amino-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic Acid
Ethyl Ester
pdb|1Y2E|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Amino-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic Acid
Ethyl Ester
pdb|1Y2K|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2K|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|3IAK|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d (Pde4d)
With Papaverine.
pdb|3K4S|A Chain A, The Structure Of The Catalytic Domain Of Human Pde4d With
4- (3-Butoxy-4-Methoxyphenyl)methyl-2-Imidazolidone
Length = 349
Score = 441 bits (1134), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/326 (65%), Positives = 251/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF IP T I ++MTLEDHY D +HN+ HAADV QST+VLL++PALE VFT L
Sbjct: 65 RDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDL 124
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FA+ IHDVDHPG++NQFLIN++SELALMYND SVLENHHL
Sbjct: 125 EILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHL-------------- 170
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E CDI NL KKQ+Q+LRKMV
Sbjct: 171 ------------------------------AVGFKLLQEENCDIFQNLTKKQRQSLRKMV 200
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
ID+VL+TDMSKHM+LLADLKTMVETKKV SGVLLLDNY+DRIQVL+N+VHCADLSNPTK
Sbjct: 201 IDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTK 260
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
PL LYR+W D +MEEFF+QGD+ERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 261 PLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 320
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLVHPDAQ+ILD LE+NR+WYQ+ I
Sbjct: 321 ADLVHPDAQDILDTLEDNREWYQSTI 346
>pdb|3SL5|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
pdb|3SL5|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
pdb|3SL5|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
pdb|3SL5|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
Length = 359
Score = 441 bits (1133), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/326 (65%), Positives = 251/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF IP T I ++MTLEDHY D +HN+ HAADV QST+VLL++PALE VFT L
Sbjct: 51 RDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDL 110
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FA+ IHDVDHPG++NQFLIN++SELALMYND SVLENHHL
Sbjct: 111 EILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHL-------------- 156
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E CDI NL KKQ+Q+LRKMV
Sbjct: 157 ------------------------------AVGFKLLQEENCDIFQNLTKKQRQSLRKMV 186
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
ID+VL+TDMSKHM+LLADLKTMVETKKV SGVLLLDNY+DRIQVL+N+VHCADLSNPTK
Sbjct: 187 IDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTK 246
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
PL LYR+W D +MEEFF+QGD+ERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 247 PLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 306
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLVHPDAQ+ILD LE+NR+WYQ+ I
Sbjct: 307 ADLVHPDAQDILDTLEDNREWYQSTI 332
>pdb|1ZKN|A Chain A, Structure Of Pde4d2-Ibmx
pdb|1ZKN|B Chain B, Structure Of Pde4d2-Ibmx
pdb|1ZKN|C Chain C, Structure Of Pde4d2-Ibmx
pdb|1ZKN|D Chain D, Structure Of Pde4d2-Ibmx
Length = 334
Score = 441 bits (1133), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/326 (65%), Positives = 251/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF IP T I ++MTLEDHY D +HN+ HAADV QST+VLL++PALE VFT L
Sbjct: 51 RDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDL 110
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FA+ IHDVDHPG++NQFLIN++SELALMYND SVLENHHL
Sbjct: 111 EILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHL-------------- 156
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E CDI NL KKQ+Q+LRKMV
Sbjct: 157 ------------------------------AVGFKLLQEENCDIFQNLTKKQRQSLRKMV 186
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
ID+VL+TDMSKHM+LLADLKTMVETKKV SGVLLLDNY+DRIQVL+N+VHCADLSNPTK
Sbjct: 187 IDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTK 246
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
PL LYR+W D +MEEFF+QGD+ERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 247 PLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 306
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLVHPDAQ+ILD LE+NR+WYQ+ I
Sbjct: 307 ADLVHPDAQDILDTLEDNREWYQSTI 332
>pdb|3IAD|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
pdb|3IAD|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
pdb|3IAD|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
pdb|3IAD|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
Length = 377
Score = 440 bits (1132), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/326 (65%), Positives = 251/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF IP T I ++MTLEDHY D +HN+ HAADV QST+VLL++PALE VFT L
Sbjct: 53 RDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDL 112
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FA+ IHDVDHPG++NQFLIN++SELALMYND SVLENHHL
Sbjct: 113 EILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHL-------------- 158
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E CDI NL KKQ+Q+LRKMV
Sbjct: 159 ------------------------------AVGFKLLQEENCDIFQNLTKKQRQSLRKMV 188
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
ID+VL+TDMSKHM+LLADLKTMVETKKV SGVLLLDNY+DRIQVL+N+VHCADLSNPTK
Sbjct: 189 IDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTK 248
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
PL LYR+W D +MEEFF+QGD+ERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 249 PLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 308
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLVHPDAQ+ILD LE+NR+WYQ+ I
Sbjct: 309 ADLVHPDAQDILDTLEDNREWYQSTI 334
>pdb|2FM0|A Chain A, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM0|B Chain B, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM0|C Chain C, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM0|D Chain D, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM5|A Chain A, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|2FM5|B Chain B, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|2FM5|C Chain C, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|2FM5|D Chain D, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|3SL3|A Chain A, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL3|B Chain B, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL3|C Chain C, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL3|D Chain D, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL4|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL4|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL4|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL4|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL6|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL6|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL6|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL6|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL8|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
pdb|3SL8|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
pdb|3SL8|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
pdb|3SL8|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
Length = 361
Score = 440 bits (1132), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/326 (65%), Positives = 251/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF IP T I ++MTLEDHY D +HN+ HAADV QST+VLL++PALE VFT L
Sbjct: 51 RDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDL 110
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FA+ IHDVDHPG++NQFLIN++SELALMYND SVLENHHL
Sbjct: 111 EILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHL-------------- 156
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E CDI NL KKQ+Q+LRKMV
Sbjct: 157 ------------------------------AVGFKLLQEENCDIFQNLTKKQRQSLRKMV 186
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
ID+VL+TDMSKHM+LLADLKTMVETKKV SGVLLLDNY+DRIQVL+N+VHCADLSNPTK
Sbjct: 187 IDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTK 246
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
PL LYR+W D +MEEFF+QGD+ERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 247 PLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 306
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLVHPDAQ+ILD LE+NR+WYQ+ I
Sbjct: 307 ADLVHPDAQDILDTLEDNREWYQSTI 332
>pdb|1Q9M|A Chain A, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1Q9M|B Chain B, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1Q9M|C Chain C, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1Q9M|D Chain D, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1OYN|A Chain A, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1OYN|B Chain B, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1OYN|C Chain C, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1OYN|D Chain D, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1PTW|A Chain A, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|1PTW|B Chain B, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|1PTW|C Chain C, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|1PTW|D Chain D, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|3V9B|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
pdb|3V9B|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
pdb|3V9B|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
pdb|3V9B|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
Length = 360
Score = 440 bits (1131), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/326 (65%), Positives = 251/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF IP T I ++MTLEDHY D +HN+ HAADV QST+VLL++PALE VFT L
Sbjct: 51 RDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDL 110
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FA+ IHDVDHPG++NQFLIN++SELALMYND SVLENHHL
Sbjct: 111 EILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHL-------------- 156
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E CDI NL KKQ+Q+LRKMV
Sbjct: 157 ------------------------------AVGFKLLQEENCDIFQNLTKKQRQSLRKMV 186
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
ID+VL+TDMSKHM+LLADLKTMVETKKV SGVLLLDNY+DRIQVL+N+VHCADLSNPTK
Sbjct: 187 IDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTK 246
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
PL LYR+W D +MEEFF+QGD+ERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 247 PLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 306
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLVHPDAQ+ILD LE+NR+WYQ+ I
Sbjct: 307 ADLVHPDAQDILDTLEDNREWYQSTI 332
>pdb|1MKD|A Chain A, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|B Chain B, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|C Chain C, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|D Chain D, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|E Chain E, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|F Chain F, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|G Chain G, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|H Chain H, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|I Chain I, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|J Chain J, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|K Chain K, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|L Chain L, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
Length = 328
Score = 439 bits (1130), Expect = e-123, Method: Compositional matrix adjust.
Identities = 215/326 (65%), Positives = 250/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF IP T I ++MTLEDHY D +HN+ HAADV QST+VLL++PALE VFT L
Sbjct: 44 RDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDL 103
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FA+ IHDVDHPG++NQFLIN++SELALMYND SVLENHHL
Sbjct: 104 EILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHL-------------- 149
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E CDI NL KKQ+Q+LRKMV
Sbjct: 150 ------------------------------AVGFKLLQEENCDIFQNLTKKQRQSLRKMV 179
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
ID+VL+TDMSKHM+LLADLKTMVETKKV SGVLLLDNY+DRIQVL+N+VHCADLSNPTK
Sbjct: 180 IDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTK 239
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
PL LYR+W D +MEEFF QGD+ERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 240 PLQLYRQWTDRIMEEFFPQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 299
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLVHPDAQ+ILD LE+NR+WYQ+ I
Sbjct: 300 ADLVHPDAQDILDTLEDNREWYQSTI 325
>pdb|2PW3|A Chain A, Structure Of The Pde4d-Camp Complex
pdb|2PW3|B Chain B, Structure Of The Pde4d-Camp Complex
Length = 327
Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/326 (65%), Positives = 251/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF IP T I ++MTLEDHY D +HN+ HAADV QST+VLL++PALE VFT L
Sbjct: 44 RDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDL 103
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FA+ IH+VDHPG++NQFLIN++SELALMYND SVLENHHL
Sbjct: 104 EILAAIFASAIHNVDHPGVSNQFLINTNSELALMYNDSSVLENHHL-------------- 149
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E CDI NL KKQ+Q+LRKMV
Sbjct: 150 ------------------------------AVGFKLLQEENCDIFQNLTKKQRQSLRKMV 179
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
ID+VL+TDMSKHM+LLADLKTMVETKKV SGVLLLDNY+DRIQVL+N+VHCADLSNPTK
Sbjct: 180 IDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTK 239
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
PL LYR+W D +MEEFF+QGD+ERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 240 PLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 299
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLVHPDAQ+ILD LE+NR+WYQ+ I
Sbjct: 300 ADLVHPDAQDILDTLEDNREWYQSTI 325
>pdb|2QYL|A Chain A, Crystal Structure Of Pde4b2b In Complex With Inhibitor Npv
Length = 337
Score = 430 bits (1106), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/326 (68%), Positives = 250/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF I + TFI +MMTLEDHY D +HNS HAADV QST+VLL++PAL+ VFT L
Sbjct: 53 RDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDL 112
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FAA IHDVDHPG++NQFLIN++SELALMYNDESVLENHHL
Sbjct: 113 EILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHL-------------- 158
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E CDI NL KKQ+QTLRKMV
Sbjct: 159 ------------------------------AVGFKLLQEEHCDIFMNLTKKQRQTLRKMV 188
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
IDMVL+TDMSKHMSLLADLKTMVETKKV SGVLLLDNYTDRIQVL N+VHCADLSNPTK
Sbjct: 189 IDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTK 248
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
L LYR+W D +MEEFFQQGDKERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 249 SLELYRQWTDRIMEEFFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETW 308
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLV PDAQ+ILD LE+NR+WYQ+ I
Sbjct: 309 ADLVQPDAQDILDTLEDNRNWYQSMI 334
>pdb|3O0J|A Chain A, Pde4b In Complex With Ligand An2898
Length = 323
Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/326 (68%), Positives = 250/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF I + TFI +MMTLEDHY D +HNS HAADV QST+VLL++PAL+ VFT L
Sbjct: 42 RDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDL 101
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FAA IHDVDHPG++NQFLIN++SELALMYNDESVLENHHL
Sbjct: 102 EILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHL-------------- 147
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E CDI NL KKQ+QTLRKMV
Sbjct: 148 ------------------------------AVGFKLLQEEHCDIFMNLTKKQRQTLRKMV 177
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
IDMVL+TDMSKHMSLLADLKTMVETKKV SGVLLLDNYTDRIQVL N+VHCADLSNPTK
Sbjct: 178 IDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTK 237
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
L LYR+W D +MEEFFQQGDKERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 238 SLELYRQWTDRIMEEFFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETW 297
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLV PDAQ+ILD LE+NR+WYQ+ I
Sbjct: 298 ADLVQPDAQDILDTLEDNRNWYQSMI 323
>pdb|3LY2|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|C Chain C, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|D Chain D, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|E Chain E, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|F Chain F, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|G Chain G, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|H Chain H, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
Length = 357
Score = 429 bits (1104), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/326 (68%), Positives = 250/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF I + TFI +MMTLEDHY D +HNS HAADV QST+VLL++PAL+ VFT L
Sbjct: 73 RDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDL 132
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FAA IHDVDHPG++NQFLIN++SELALMYNDESVLENHHL
Sbjct: 133 EILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHL-------------- 178
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E CDI NL KKQ+QTLRKMV
Sbjct: 179 ------------------------------AVGFKLLQEEHCDIFMNLTKKQRQTLRKMV 208
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
IDMVL+TDMSKHMSLLADLKTMVETKKV SGVLLLDNYTDRIQVL N+VHCADLSNPTK
Sbjct: 209 IDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTK 268
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
L LYR+W D +MEEFFQQGDKERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 269 SLELYRQWTDRIMEEFFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETW 328
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLV PDAQ+ILD LE+NR+WYQ+ I
Sbjct: 329 ADLVQPDAQDILDTLEDNRNWYQSMI 354
>pdb|1TB5|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Amp
pdb|1TB5|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Amp
Length = 381
Score = 429 bits (1103), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/326 (68%), Positives = 250/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF I + TFI +MMTLEDHY D +HNS HAADV QST+VLL++PAL+ VFT L
Sbjct: 56 RDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDL 115
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FAA IHDVDHPG++NQFLIN++SELALMYNDESVLENHHL
Sbjct: 116 EILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHL-------------- 161
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E CDI NL KKQ+QTLRKMV
Sbjct: 162 ------------------------------AVGFKLLQEEHCDIFMNLTKKQRQTLRKMV 191
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
IDMVL+TDMSKHMSLLADLKTMVETKKV SGVLLLDNYTDRIQVL N+VHCADLSNPTK
Sbjct: 192 IDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTK 251
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
L LYR+W D +MEEFFQQGDKERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 252 SLELYRQWTDRIMEEFFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETW 311
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLV PDAQ+ILD LE+NR+WYQ+ I
Sbjct: 312 ADLVQPDAQDILDTLEDNRNWYQSMI 337
>pdb|1XLX|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Cilomilast
pdb|1XLX|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Cilomilast
pdb|1XOT|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Vardenafil
pdb|1XOT|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Vardenafil
pdb|1Y2H|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 1-(2-
Chloro-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2H|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 1-(2-
Chloro-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2J|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2J|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
Length = 398
Score = 429 bits (1103), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/326 (68%), Positives = 250/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF I + TFI +MMTLEDHY D +HNS HAADV QST+VLL++PAL+ VFT L
Sbjct: 73 RDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDL 132
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FAA IHDVDHPG++NQFLIN++SELALMYNDESVLENHHL
Sbjct: 133 EILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHL-------------- 178
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E CDI NL KKQ+QTLRKMV
Sbjct: 179 ------------------------------AVGFKLLQEEHCDIFMNLTKKQRQTLRKMV 208
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
IDMVL+TDMSKHMSLLADLKTMVETKKV SGVLLLDNYTDRIQVL N+VHCADLSNPTK
Sbjct: 209 IDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTK 268
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
L LYR+W D +MEEFFQQGDKERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 269 SLELYRQWTDRIMEEFFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETW 328
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLV PDAQ+ILD LE+NR+WYQ+ I
Sbjct: 329 ADLVQPDAQDILDTLEDNRNWYQSMI 354
>pdb|2QYM|A Chain A, Crystal Structure Of Unliganded Pde4c2
Length = 358
Score = 429 bits (1103), Expect = e-120, Method: Compositional matrix adjust.
Identities = 212/326 (65%), Positives = 245/326 (75%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF IPA T +++ LE HY + +HNS HAADV QST+VLL +PALE VFT L
Sbjct: 52 RDLLKTFQIPADTLATYLLMLEGHYHANVAYHNSLHAADVAQSTHVLLATPALEAVFTDL 111
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AALFA+ IHDVDHPG++NQFLIN++SELALMYND SVLENHHL
Sbjct: 112 EILAALFASAIHDVDHPGVSNQFLINTNSELALMYNDASVLENHHL-------------- 157
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E CDI NL+ KQ+ +LR+MV
Sbjct: 158 ------------------------------AVGFKLLQAENCDIFQNLSAKQRLSLRRMV 187
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
IDMVL+TDMSKHM+LLADLKTMVETKKV GVLLLDNY+DRIQVL+NLVHCADLSNPTK
Sbjct: 188 IDMVLATDMSKHMNLLADLKTMVETKKVTSLGVLLLDNYSDRIQVLQNLVHCADLSNPTK 247
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
PLPLYR+W D +M EFFQQGD+ERE LDISPMCD+ +A++EKSQVGFIDYI HPLWETW
Sbjct: 248 PLPLYRQWTDRIMAEFFQQGDRERESGLDISPMCDKHTASVEKSQVGFIDYIAHPLWETW 307
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLVHPDAQ++LD LE+NR+WYQ+ I
Sbjct: 308 ADLVHPDAQDLLDTLEDNREWYQSKI 333
>pdb|3KKT|A Chain A, Crystal Structure Of Human Pde4b With 5-[3-[(1s,2s,4r)-
Bicyclo[2.2.1]hept-2-Yloxy]-4-Methoxyp
Henyl]tetrahydro-2(1h)- Pyrimidinone Reveals Ordering Of
The C-Terminal Helix Residues 502- 509.
pdb|3KKT|B Chain B, Crystal Structure Of Human Pde4b With 5-[3-[(1s,2s,4r)-
Bicyclo[2.2.1]hept-2-Yloxy]-4-Methoxyp
Henyl]tetrahydro-2(1h)- Pyrimidinone Reveals Ordering Of
The C-Terminal Helix Residues 502- 509
Length = 398
Score = 429 bits (1102), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/326 (68%), Positives = 250/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF I + TFI +MMTLEDHY D +HNS HAADV QST+VLL++PAL+ VFT L
Sbjct: 73 RDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDL 132
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FAA IHDVDHPG++NQFLIN++SELALMYNDESVLENHHL
Sbjct: 133 EILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHL-------------- 178
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E CDI NL KKQ+QTLRKMV
Sbjct: 179 ------------------------------AVGFKLLQEEHCDIFMNLTKKQRQTLRKMV 208
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
IDMVL+TDMSKHMSLLADLKTMVETKKV SGVLLLDNYTDRIQVL N+VHCADLSNPTK
Sbjct: 209 IDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTK 268
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
L LYR+W D +MEEFFQQGDKERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 269 SLELYRQWTDRIMEEFFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETW 328
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLV PDAQ+ILD LE+NR+WYQ+ I
Sbjct: 329 ADLVQPDAQDILDTLEDNRNWYQSMI 354
>pdb|1F0J|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b
pdb|1F0J|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b2b
Length = 377
Score = 429 bits (1102), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/326 (68%), Positives = 250/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF I + TFI +MMTLEDHY D +HNS HAADV QST+VLL++PAL+ VFT L
Sbjct: 52 RDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDL 111
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FAA IHDVDHPG++NQFLIN++SELALMYNDESVLENHHL
Sbjct: 112 EILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHL-------------- 157
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E CDI NL KKQ+QTLRKMV
Sbjct: 158 ------------------------------AVGFKLLQEEHCDIFMNLTKKQRQTLRKMV 187
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
IDMVL+TDMSKHMSLLADLKTMVETKKV SGVLLLDNYTDRIQVL N+VHCADLSNPTK
Sbjct: 188 IDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTK 247
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
L LYR+W D +MEEFFQQGDKERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 248 SLELYRQWTDRIMEEFFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETW 307
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLV PDAQ+ILD LE+NR+WYQ+ I
Sbjct: 308 ADLVQPDAQDILDTLEDNRNWYQSMI 333
>pdb|1RO6|A Chain A, Crystal Structure Of Pde4b2b Complexed With Rolipram (r &
S)
pdb|1RO6|B Chain B, Crystal Structure Of Pde4b2b Complexed With Rolipram (r &
S)
pdb|1RO9|A Chain A, Crystal Structures Of The Catalytic Domain Of
Phosphodiesterase 4b2b Complexed With 8-Br-Amp
pdb|1RO9|B Chain B, Crystal Structures Of The Catalytic Domain Of
Phosphodiesterase 4b2b Complexed With 8-Br-Amp
pdb|1ROR|A Chain A, Crystal Structures Of The Catalytic Domain Of
Phosphodiesterase 4b2b Complexed With Amp
pdb|1ROR|B Chain B, Crystal Structures Of The Catalytic Domain Of
Phosphodiesterase 4b2b Complexed With Amp
Length = 378
Score = 429 bits (1102), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/326 (68%), Positives = 250/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF I + TFI +MMTLEDHY D +HNS HAADV QST+VLL++PAL+ VFT L
Sbjct: 53 RDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDL 112
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FAA IHDVDHPG++NQFLIN++SELALMYNDESVLENHHL
Sbjct: 113 EILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHL-------------- 158
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E CDI NL KKQ+QTLRKMV
Sbjct: 159 ------------------------------AVGFKLLQEEHCDIFMNLTKKQRQTLRKMV 188
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
IDMVL+TDMSKHMSLLADLKTMVETKKV SGVLLLDNYTDRIQVL N+VHCADLSNPTK
Sbjct: 189 IDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTK 248
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
L LYR+W D +MEEFFQQGDKERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 249 SLELYRQWTDRIMEEFFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETW 308
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLV PDAQ+ILD LE+NR+WYQ+ I
Sbjct: 309 ADLVQPDAQDILDTLEDNRNWYQSMI 334
>pdb|3HMV|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex Tetrahydrobenzothiophene Inhibitor
pdb|3HMV|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex Tetrahydrobenzothiophene Inhibitor
Length = 378
Score = 428 bits (1100), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/326 (68%), Positives = 249/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF I + TFI +MMTLEDHY D +HNS HAADV QST+VLL++PAL+ VFT L
Sbjct: 53 RDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDL 112
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FAA IHDVDHPG++NQFLIN++SELALMYNDESVLENHHL
Sbjct: 113 EILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHL-------------- 158
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E CDI NL KKQ+QTLRKMV
Sbjct: 159 ------------------------------AVGFKLLQEEHCDIFMNLTKKQRQTLRKMV 188
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
IDMVL+TDMSKHMSLLADLKTMVETKKV SGVLLLDNYTDRIQVL N+VHCADLSNPTK
Sbjct: 189 IDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTK 248
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
L LYR+W D +MEEFFQQGDKERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 249 SLELYRQWTDRIMEEFFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETW 308
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLV PDAQ+ILD LE+NR+WYQ I
Sbjct: 309 ADLVQPDAQDILDTLEDNRNWYQAMI 334
>pdb|3D3P|A Chain A, Crystal Structure Of Pde4b Catalytic Domain In Complex
With A Pyrazolopyridine Inhibitor
pdb|3FRG|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex With A Quinoline Inhibitor
pdb|3GWT|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex With A Quinoline Inhibitor
pdb|3O56|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex With A 5- Heterocycle Pyrazolopyridine Inhibitor
pdb|3O57|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex With A 5- Heterocycle Pyrazolopyridine Inhibitor
Length = 353
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/326 (68%), Positives = 249/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF I + TFI +MMTLEDHY D +HNS HAADV QST+VLL++PAL+ VFT L
Sbjct: 53 RDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDL 112
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FAA IHDVDHPG++NQFLIN++SELALMYNDESVLENHHL
Sbjct: 113 EILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHL-------------- 158
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E CDI NL KKQ+QTLRKMV
Sbjct: 159 ------------------------------AVGFKLLQEEHCDIFMNLTKKQRQTLRKMV 188
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
IDMVL+TDMSKHMSLLADLKTMVETKKV SGVLLLDNYTDRIQVL N+VHCADLSNPTK
Sbjct: 189 IDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTK 248
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
L LYR+W D +MEEFFQQGDKERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 249 SLELYRQWTDRIMEEFFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETW 308
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLV PDAQ+ILD LE+NR+WYQ I
Sbjct: 309 ADLVQPDAQDILDTLEDNRNWYQAMI 334
>pdb|1XM4|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Piclamilast
pdb|1XMU|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Roflumilast
pdb|1XMY|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R)- Rolipram
Length = 398
Score = 425 bits (1093), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/326 (67%), Positives = 249/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF I + TFI +MMTLEDHY D +HNS HAADV QST+VLL++PAL+ VFT L
Sbjct: 73 RDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDL 132
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FAA IHDVDHPG++NQFLIN++SELALMYNDESVLENHHL
Sbjct: 133 EILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHL-------------- 178
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E CDI NL KKQ+QTLRKMV
Sbjct: 179 ------------------------------AVGFKLLQEEHCDIFMNLTKKQRQTLRKMV 208
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
IDMVL+TDMSKHMSLLADLKTMVETKKV SGVLLLDNYTDRIQVL N+VHCADLSNPTK
Sbjct: 209 IDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTK 268
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
L LYR+W D +MEEFFQQGDKERE ++ISPM D+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 269 SLELYRQWTDRIMEEFFQQGDKERERGMEISPMXDKHTASVEKSQVGFIDYIVHPLWETW 328
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLV PDAQ+ILD LE+NR+WYQ+ I
Sbjct: 329 ADLVQPDAQDILDTLEDNRNWYQSMI 354
>pdb|1XLZ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Filaminast
pdb|1XLZ|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Filaminast
pdb|1XM4|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Piclamilast
pdb|1XMU|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Roflumilast
pdb|1XMY|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R)- Rolipram
Length = 398
Score = 425 bits (1093), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/326 (67%), Positives = 249/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF I + TFI +MMTLEDHY D +HNS HAADV QST+VLL++PAL+ VFT L
Sbjct: 73 RDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDL 132
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FAA IHDVDHPG++NQFLIN++SELALMYNDESVLENHHL
Sbjct: 133 EILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHL-------------- 178
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E DI NL KKQ+QTLRKMV
Sbjct: 179 ------------------------------AVGFKLLQEEHXDIFMNLTKKQRQTLRKMV 208
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
IDMVL+TDMSKHMSLLADLKTMVETKKV SGVLLLDNYTDRIQVL N+VHCADLSNPTK
Sbjct: 209 IDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTK 268
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
L LYR+W D +MEEFFQQGDKERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 269 SLELYRQWTDRIMEEFFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETW 328
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLV PDAQ+ILD LE+NR+WYQ+ I
Sbjct: 329 ADLVQPDAQDILDTLEDNRNWYQSMI 354
>pdb|3TVX|A Chain A, The Structure Of Pde4a With Pentoxifylline At 2.84a
Resolution
pdb|3TVX|B Chain B, The Structure Of Pde4a With Pentoxifylline At 2.84a
Resolution
Length = 338
Score = 421 bits (1082), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/326 (66%), Positives = 248/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLK F IP T + +M+TLEDHY D +HNS HAADV QST+VLL +PAL+ VFT L
Sbjct: 57 RDLLKKFRIPVDTMVTYMLTLEDHYHADVAYHNSLHAADVLQSTHVLLATPALDAVFTDL 116
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AALFAA IHDVDHPG++NQFLIN++SELALMYNDESVLENHHL
Sbjct: 117 EILAALFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHL-------------- 162
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ + CDI NL+K+Q+Q+LRKMV
Sbjct: 163 ------------------------------AVGFKLLQEDNCDIFQNLSKRQRQSLRKMV 192
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
IDMVL+TDMSKHM+LLADLKTMVETKKV SGVLLLDNY+DRIQVL N+VHCADLSNPTK
Sbjct: 193 IDMVLATDMSKHMTLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLRNMVHCADLSNPTK 252
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
PL LYR+W D +M EFFQQGD+ERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 253 PLELYRQWTDRIMAEFFQQGDRERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETW 312
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLVHPDAQEILD LE+NRDWY + I
Sbjct: 313 ADLVHPDAQEILDTLEDNRDWYYSAI 338
>pdb|1XM6|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R)- Mesopram
pdb|1XM6|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R)- Mesopram
pdb|1XN0|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R,S)- Rolipram
pdb|1XN0|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R,S)- Rolipram
pdb|1XOS|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Sildenafil
Length = 398
Score = 421 bits (1081), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/326 (67%), Positives = 248/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF I + TFI +MMTLEDHY D +HNS HAADV QST+VLL++PAL+ VFT L
Sbjct: 73 RDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDL 132
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FAA IHDVDHPG++NQFLIN++SELALMYNDESVLENHHL
Sbjct: 133 EILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHL-------------- 178
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ E DI NL KKQ+QTLRKMV
Sbjct: 179 ------------------------------AVGFKLLQEEHXDIFMNLTKKQRQTLRKMV 208
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
IDMVL+TDMSKHMSLLADLKTMVETKKV SGVLLLDNYTDRIQVL N+VHCADLSNPTK
Sbjct: 209 IDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTK 268
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
L LYR+W D +MEEFFQQGDKERE ++ISPM D+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 269 SLELYRQWTDRIMEEFFQQGDKERERGMEISPMXDKHTASVEKSQVGFIDYIVHPLWETW 328
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLV PDAQ+ILD LE+NR+WYQ+ I
Sbjct: 329 ADLVQPDAQDILDTLEDNRNWYQSMI 354
>pdb|3I8V|A Chain A, Crystal Structure Of Human Pde4a With
4-(3-butoxy-4-methoxyphenyl) Methyl-2-imidazolidone
pdb|3I8V|B Chain B, Crystal Structure Of Human Pde4a With
4-(3-butoxy-4-methoxyphenyl) Methyl-2-imidazolidone
Length = 354
Score = 421 bits (1081), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/326 (66%), Positives = 248/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLK F IP T + +M+TLEDHY D +HNS HAADV QST+VLL +PAL+ VFT L
Sbjct: 73 RDLLKKFRIPVDTMVTYMLTLEDHYHADVAYHNSLHAADVLQSTHVLLATPALDAVFTDL 132
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AALFAA IHDVDHPG++NQFLIN++SELALMYNDESVLENHHL
Sbjct: 133 EILAALFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHL-------------- 178
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ + CDI NL+K+Q+Q+LRKMV
Sbjct: 179 ------------------------------AVGFKLLQEDNCDIFQNLSKRQRQSLRKMV 208
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
IDMVL+TDMSKHM+LLADLKTMVETKKV SGVLLLDNY+DRIQVL N+VHCADLSNPTK
Sbjct: 209 IDMVLATDMSKHMTLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLRNMVHCADLSNPTK 268
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
PL LYR+W D +M EFFQQGD+ERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 269 PLELYRQWTDRIMAEFFQQGDRERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETW 328
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLVHPDAQEILD LE+NRDWY + I
Sbjct: 329 ADLVHPDAQEILDTLEDNRDWYYSAI 354
>pdb|2QYK|A Chain A, Crystal Structure Of Pde4a10 In Complex With Inhibitor Npv
pdb|2QYK|B Chain B, Crystal Structure Of Pde4a10 In Complex With Inhibitor Npv
Length = 335
Score = 420 bits (1080), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/326 (66%), Positives = 248/326 (76%), Gaps = 44/326 (13%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLK F IP T + +M+TLEDHY D +HNS HAADV QST+VLL +PAL+ VFT L
Sbjct: 54 RDLLKKFRIPVDTMVTYMLTLEDHYHADVAYHNSLHAADVLQSTHVLLATPALDAVFTDL 113
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AALFAA IHDVDHPG++NQFLIN++SELALMYNDESVLENHHL
Sbjct: 114 EILAALFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHL-------------- 159
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
AV FKLLQ + CDI NL+K+Q+Q+LRKMV
Sbjct: 160 ------------------------------AVGFKLLQEDNCDIFQNLSKRQRQSLRKMV 189
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
IDMVL+TDMSKHM+LLADLKTMVETKKV SGVLLLDNY+DRIQVL N+VHCADLSNPTK
Sbjct: 190 IDMVLATDMSKHMTLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLRNMVHCADLSNPTK 249
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
PL LYR+W D +M EFFQQGD+ERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 250 PLELYRQWTDRIMAEFFQQGDRERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETW 309
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLVHPDAQEILD LE+NRDWY + I
Sbjct: 310 ADLVHPDAQEILDTLEDNRDWYYSAI 335
>pdb|1TAZ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 1b
Length = 365
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/319 (35%), Positives = 165/319 (51%), Gaps = 56/319 (17%)
Query: 88 ELGNNRDLLKTFLIPAKTFINFMMTLEDHYVK-DNPFHNSTHAADVTQSTNVLLNSPALE 146
EL +L+ F IP ++F+ LE Y K NP+HN HAADVTQ+ + L +
Sbjct: 45 ELLTRHNLISRFKIPTVFLMSFLDALETGYGKYKNPYHNQIHAADVTQTVHXFLLRTGMV 104
Query: 147 DVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQ 206
+ +E++A +FAA IHD +H G TN F I + SE A++YND SVLENHH++ F+L+Q
Sbjct: 105 HCLSEIELLAIIFAAAIHDYEHTGTTNSFHIQTKSECAIVYNDRSVLENHHISSVFRLMQ 164
Query: 207 NEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQ 266
++ +I NL K + LR +VI+MVL+T
Sbjct: 165 DDEMNIFINLTKDEFVELRALVIEMVLAT------------------------------- 193
Query: 267 TLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCAD 326
DMS H + +KT ++ + D+ + L L+H AD
Sbjct: 194 -------------DMSCHFQQVKTMKTALQQLE-----------RIDKPKALSLLLHAAD 229
Query: 327 LSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVH 386
+S+PTK ++ +W LMEEFF+QGDKE EL L SP+CDR S + +SQ+GFID+IV
Sbjct: 230 ISHPTKQWLVHSRWTKALMEEFFRQGDKEAELGLPFSPLCDRTSTLVAQSQIGFIDFIVE 289
Query: 387 PLWETWADLVHPDAQEILD 405
P + D+ Q + D
Sbjct: 290 PTFSVLTDVAEKSVQPLAD 308
>pdb|3ECM|A Chain A, Crystal Structure Of The Unliganded Pde8a Catalytic Domain
pdb|3ECN|A Chain A, Crystal Structure Of Pde8a Catalytic Domain In Complex
With Ibmx
pdb|3ECN|B Chain B, Crystal Structure Of Pde8a Catalytic Domain In Complex
With Ibmx
Length = 338
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 169/304 (55%), Gaps = 36/304 (11%)
Query: 105 TFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIH 164
T +++ +E +Y NP+HNSTH+ADV +T L+ +++ P++ +AAL AATIH
Sbjct: 56 TLRSWLQIIEANYHSSNPYHNSTHSADVLHATAYFLSKERIKETLDPIDEVAALIAATIH 115
Query: 165 DVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQ-NEGCDILCNLNKKQKQT 223
DVDHPG TN FL N+ SELA++YND +VLE+HH A+AF+L ++ C+I N+ + +T
Sbjct: 116 DVDHPGRTNSFLCNAGSELAILYNDTAVLESHHAALAFQLTTGDDKCNIFKNMERNDYRT 175
Query: 224 LRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSK 283
LR+ +IDMVL+T++ K + + K V ++K
Sbjct: 176 LRQGIIDMVLATEM------------------------TKHFEHVNKFV------NSINK 205
Query: 284 HMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDL 343
LA L+ ET K +L +R + L+ CAD+SNP +PL +W
Sbjct: 206 P---LATLEENGETDKNQEVINTMLRTPENRTLIKRMLIKCADVSNPCRPLQYCIEWAAR 262
Query: 344 LMEEFFQQGDKERELNLDIS-PMCDRLSATIEKSQVGFIDYIVHPLWETWADLVH-PDAQ 401
+ EE+F Q D+E++ L + P+ DR + +I KSQ+ FIDY + +++ W V PD
Sbjct: 263 ISEEYFSQTDEEKQQGLPVVMPVFDRNTCSIPKSQISFIDYFITDMFDAWDAFVDLPDLM 322
Query: 402 EILD 405
+ LD
Sbjct: 323 QHLD 326
>pdb|1ZKL|A Chain A, Multiple Determinants For Inhibitor Selectivity Of Cyclic
Nucleotide Phosphodiesterases
Length = 353
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 151/299 (50%), Gaps = 52/299 (17%)
Query: 95 LLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEI 154
L++ F + F++ +++ Y NP+HN+ HAADVTQ+ + L P L + TP +I
Sbjct: 54 LIEYFHLDMMKLRRFLVMIQEDYHSQNPYHNAVHAADVTQAMHCYLKEPKLANSVTPWDI 113
Query: 155 MAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILC 214
+ +L AA HD+DHPG+ FLI ++ LA +Y + SVLENHH A LL+ G +
Sbjct: 114 LLSLIAAATHDLDHPGVNQPFLIKTNHYLATLYKNTSVLENHHWRSAVGLLRESG--LFS 171
Query: 215 NLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVID 274
+L + +Q + + ++L+TDI QN
Sbjct: 172 HLPLESRQQMETQIGALILATDISRQN--------------------------------- 198
Query: 275 MVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPL 334
+++SL + G L L++ R VL+ + CAD+ NP +
Sbjct: 199 --------EYLSLF---------RSHLDRGDLCLEDTRHRHLVLQMALKCADICNPCRTW 241
Query: 335 PLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETWA 393
L ++W + + EEFF QGD E++ +L +SP+CDR + +I Q+GF+ Y+V PL+ WA
Sbjct: 242 ELSKQWSEKVTEEFFHQGDIEKKYHLGVSPLCDRHTESIANIQIGFMTYLVEPLFTEWA 300
>pdb|3G3N|A Chain A, Pde7a Catalytic Domain In Complex With 3-(2,6-
Difluorophenyl)-2-(Methylthio)quinazolin-4(3h)-One
Length = 318
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 151/299 (50%), Gaps = 52/299 (17%)
Query: 95 LLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEI 154
L++ F + F++ +++ Y NP+HN+ HAADVTQ+ + L P L + TP +I
Sbjct: 45 LIEYFHLDMMKLRRFLVMIQEDYHSQNPYHNAVHAADVTQAMHCYLKEPKLANSVTPWDI 104
Query: 155 MAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILC 214
+ +L AA HD+DHPG+ FLI ++ LA +Y + SVLENHH A LL+ G +
Sbjct: 105 LLSLIAAATHDLDHPGVNQPFLIKTNHYLATLYKNTSVLENHHWRSAVGLLRESG--LFS 162
Query: 215 NLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVID 274
+L + +Q + + ++L+TDI QN
Sbjct: 163 HLPLESRQQMETQIGALILATDISRQN--------------------------------- 189
Query: 275 MVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPL 334
+++SL + G L L++ R VL+ + CAD+ NP +
Sbjct: 190 --------EYLSLF---------RSHLDRGDLCLEDTRHRHLVLQMALKCADICNPCRTW 232
Query: 335 PLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETWA 393
L ++W + + EEFF QGD E++ +L +SP+CDR + +I Q+GF+ Y+V PL+ WA
Sbjct: 233 ELSKQWSEKVTEEFFHQGDIEKKYHLGVSPLCDRHTESIANIQIGFMTYLVEPLFTEWA 291
>pdb|2YY2|A Chain A, Crystal Structure Of The Human Phosphodiesterase 9a
Catalytic Domain Complexed With Ibmx
pdb|2YY2|B Chain B, Crystal Structure Of The Human Phosphodiesterase 9a
Catalytic Domain Complexed With Ibmx
Length = 333
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 161/330 (48%), Gaps = 55/330 (16%)
Query: 87 EELGNNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALE 146
E + ++ L++ F I T ++ + D+Y ++NPFHN H V Q ++ +L+
Sbjct: 43 EHMYHDLGLVRDFSINPVTLRRWLFCVHDNY-RNNPFHNFRHCFCVAQMMYSMVWLCSLQ 101
Query: 147 DVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQ 206
+ F+ +I+ + AA HD+DHPG N + IN+ +ELA+ YND S LENHH AVAF++L
Sbjct: 102 EKFSQTDILILMTAAICHDLDHPGYNNTYQINARTELAVRYNDISPLENHHCAVAFQILA 161
Query: 207 NEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQ 266
C+I N+ + +R+ +I ++L+T
Sbjct: 162 EPECNIFSNIPPDGFKQIRQGMITLILAT------------------------------- 190
Query: 267 TLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCAD 326
DM++H ++ K +E + + L L+ C D
Sbjct: 191 -------------DMARHAEIMDSFKEKMENFDYSNEEHMTLLKMI--------LIKCCD 229
Query: 327 LSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVH 386
+SN +P+ + WVD L+EE+F Q D+E+ L ++P DR T +Q+GFI +++
Sbjct: 230 ISNEVRPMEVAEPWVDCLLEEYFMQSDREKSEGLPVAPFMDRDKVTKATAQIGFIKFVLI 289
Query: 387 PLWETWADLVHPDAQEI-LDMLEENRDWYQ 415
P++ET L P +EI L L E+RD Y+
Sbjct: 290 PMFETVTKLF-PMVEEIMLQPLWESRDRYE 318
>pdb|3QI3|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With
Inhibitor Bay73-6691
pdb|3QI3|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With
Inhibitor Bay73-6691
pdb|3QI4|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
pdb|3QI4|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
Length = 533
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 165/330 (50%), Gaps = 55/330 (16%)
Query: 87 EELGNNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALE 146
E + ++ L++ F I T ++ + D+Y ++NPFHN H V Q ++ +L+
Sbjct: 216 EHMYHDLGLVRDFSINPVTLRRWLFCVHDNY-RNNPFHNFRHCFCVAQMMYSMVWLCSLQ 274
Query: 147 DVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQ 206
+ F+ +I+ + AA HD+DHPG N + IN+ +ELA+ YND S LENHH AVAF++L
Sbjct: 275 EKFSQTDILILMTAAICHDLDHPGYNNTYQINARTELAVRYNDISPLENHHCAVAFQILA 334
Query: 207 NEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQ 266
C+I N+ + +R+ +I ++L+T
Sbjct: 335 EPECNIFSNIPPDGFKQIRQGMITLILAT------------------------------- 363
Query: 267 TLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCAD 326
DM++H ++ K +E + + L ++++ L+ C D
Sbjct: 364 -------------DMARHAEIMDSFKEKMENFDYSNEEHMTL------LKMI--LIKCCD 402
Query: 327 LSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVH 386
+SN +P+ + WVD L+EE+F Q D+E+ L ++P DR T +++GFI +++
Sbjct: 403 ISNEVRPMEVAEPWVDCLLEEYFMQSDREKSEGLPVAPFMDRDKVTKATAEIGFIKFVLI 462
Query: 387 PLWETWADLVHPDAQEI-LDMLEENRDWYQ 415
P++ET L P +EI L L E+RD Y+
Sbjct: 463 PMFETVTKLF-PMVEEIMLQPLWESRDRYE 491
>pdb|3N3Z|A Chain A, Crystal Structure Of Pde9a (E406a) Mutant In Complex With
Ibmx
pdb|3N3Z|B Chain B, Crystal Structure Of Pde9a (E406a) Mutant In Complex With
Ibmx
Length = 326
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 161/330 (48%), Gaps = 55/330 (16%)
Query: 87 EELGNNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALE 146
E + ++ L++ F I T ++ + D+Y ++NPFHN H V Q ++ +L+
Sbjct: 36 EHMYHDLGLVRDFSINPVTLRRWLFCVHDNY-RNNPFHNFRHCFCVAQMMYSMVWLCSLQ 94
Query: 147 DVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQ 206
+ F+ +I+ + AA HD+DHPG N + IN+ +ELA+ YND S LENHH AVAF++L
Sbjct: 95 EKFSQTDILILMTAAICHDLDHPGYNNTYQINARTELAVRYNDISPLENHHCAVAFQILA 154
Query: 207 NEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQ 266
C+I N+ + +R+ +I ++L+T
Sbjct: 155 EPECNIFSNIPPDGFKQIRQGMITLILAT------------------------------- 183
Query: 267 TLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCAD 326
DM++H ++ K +E + + L L+ C D
Sbjct: 184 -------------DMARHAEIMDSFKEKMENFDYSNEEHMTLLKMI--------LIKCCD 222
Query: 327 LSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVH 386
+SN +P+ + WVD L+EE+F Q D+E+ L ++P DR T +Q+GFI +++
Sbjct: 223 ISNAVRPMEVAEPWVDCLLEEYFMQSDREKSEGLPVAPFMDRDKVTKATAQIGFIKFVLI 282
Query: 387 PLWETWADLVHPDAQEI-LDMLEENRDWYQ 415
P++ET L P +EI L L E+RD Y+
Sbjct: 283 PMFETVTKLF-PMVEEIMLQPLWESRDRYE 311
>pdb|2HD1|A Chain A, Crystal Structure Of Pde9 In Complex With Ibmx
pdb|2HD1|B Chain B, Crystal Structure Of Pde9 In Complex With Ibmx
pdb|3K3E|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (R)-Bay73-6691
pdb|3K3E|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (R)-Bay73-6691
pdb|3K3H|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (S)-Bay73-6691
pdb|3K3H|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (S)-Bay73-6691
pdb|4GH6|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With Inhibitor 28
pdb|4GH6|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With Inhibitor 28
Length = 326
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 161/330 (48%), Gaps = 55/330 (16%)
Query: 87 EELGNNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALE 146
E + ++ L++ F I T ++ + D+Y ++NPFHN H V Q ++ +L+
Sbjct: 36 EHMYHDLGLVRDFSINPVTLRRWLFCVHDNY-RNNPFHNFRHCFCVAQMMYSMVWLCSLQ 94
Query: 147 DVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQ 206
+ F+ +I+ + AA HD+DHPG N + IN+ +ELA+ YND S LENHH AVAF++L
Sbjct: 95 EKFSQTDILILMTAAICHDLDHPGYNNTYQINARTELAVRYNDISPLENHHCAVAFQILA 154
Query: 207 NEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQ 266
C+I N+ + +R+ +I ++L+T
Sbjct: 155 EPECNIFSNIPPDGFKQIRQGMITLILAT------------------------------- 183
Query: 267 TLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCAD 326
DM++H ++ K +E + + L L+ C D
Sbjct: 184 -------------DMARHAEIMDSFKEKMENFDYSNEEHMTLLKMI--------LIKCCD 222
Query: 327 LSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVH 386
+SN +P+ + WVD L+EE+F Q D+E+ L ++P DR T +Q+GFI +++
Sbjct: 223 ISNEVRPMEVAEPWVDCLLEEYFMQSDREKSEGLPVAPFMDRDKVTKATAQIGFIKFVLI 282
Query: 387 PLWETWADLVHPDAQEI-LDMLEENRDWYQ 415
P++ET L P +EI L L E+RD Y+
Sbjct: 283 PMFETVTKLF-PMVEEIMLQPLWESRDRYE 311
>pdb|3DY8|A Chain A, Human Phosphodiesterase 9 In Complex With Product 5'-gmp
(e+p Complex)
pdb|3DY8|B Chain B, Human Phosphodiesterase 9 In Complex With Product 5'-gmp
(e+p Complex)
pdb|3DYL|A Chain A, Human Phosphdiesterase 9 Substrate Complex (Es Complex)
pdb|3DYL|B Chain B, Human Phosphdiesterase 9 Substrate Complex (Es Complex)
pdb|3DYN|A Chain A, Human Phosphodiestrase 9 In Complex With Cgmp (Zn
Inhibited)
pdb|3DYN|B Chain B, Human Phosphodiestrase 9 In Complex With Cgmp (Zn
Inhibited)
pdb|3DYQ|A Chain A, Human Phosphodiestrase 9 (Inhibited By Omitting Divalent
Cation) In Complex With Cgmp
pdb|3DYQ|B Chain B, Human Phosphodiestrase 9 (Inhibited By Omitting Divalent
Cation) In Complex With Cgmp
pdb|3DYS|A Chain A, Human Phosphodiestrase-5'gmp Complex (Ep), Produced By
Soaking With 20mm Cgmp+20 Mm Mncl2+20 Mm Mgcl2 For 2
Hours, And Flash-Cooled To Liquid Nitrogen Temperature
When Substrate Was Still Abudant.
pdb|3DYS|B Chain B, Human Phosphodiestrase-5'gmp Complex (Ep), Produced By
Soaking With 20mm Cgmp+20 Mm Mncl2+20 Mm Mgcl2 For 2
Hours, And Flash-Cooled To Liquid Nitrogen Temperature
When Substrate Was Still Abudant.
pdb|3JSI|A Chain A, Human Phosphodiesterase 9 In Complex With Inhibitor
pdb|3JSI|B Chain B, Human Phosphodiesterase 9 In Complex With Inhibitor
pdb|3JSW|A Chain A, Human Pde9 In Complex With Selective Inhibitor
pdb|3JSW|B Chain B, Human Pde9 In Complex With Selective Inhibitor
pdb|4E90|A Chain A, Human Phosphodiesterase 9 In Complex With Inhibitors
pdb|4E90|B Chain B, Human Phosphodiesterase 9 In Complex With Inhibitors
Length = 329
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 161/330 (48%), Gaps = 55/330 (16%)
Query: 87 EELGNNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALE 146
E + ++ L++ F I T ++ + D+Y ++NPFHN H V Q ++ +L+
Sbjct: 39 EHMYHDLGLVRDFSINPVTLRRWLFCVHDNY-RNNPFHNFRHCFCVAQMMYSMVWLCSLQ 97
Query: 147 DVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQ 206
+ F+ +I+ + AA HD+DHPG N + IN+ +ELA+ YND S LENHH AVAF++L
Sbjct: 98 EKFSQTDILILMTAAICHDLDHPGYNNTYQINARTELAVRYNDISPLENHHCAVAFQILA 157
Query: 207 NEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQ 266
C+I N+ + +R+ +I ++L+T
Sbjct: 158 EPECNIFSNIPPDGFKQIRQGMITLILAT------------------------------- 186
Query: 267 TLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCAD 326
DM++H ++ K +E + + L L+ C D
Sbjct: 187 -------------DMARHAEIMDSFKEKMENFDYSNEEHMTLLKMI--------LIKCCD 225
Query: 327 LSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVH 386
+SN +P+ + WVD L+EE+F Q D+E+ L ++P DR T +Q+GFI +++
Sbjct: 226 ISNEVRPMEVAEPWVDCLLEEYFMQSDREKSEGLPVAPFMDRDKVTKATAQIGFIKFVLI 285
Query: 387 PLWETWADLVHPDAQEI-LDMLEENRDWYQ 415
P++ET L P +EI L L E+RD Y+
Sbjct: 286 PMFETVTKLF-PMVEEIMLQPLWESRDRYE 314
>pdb|1SO2|A Chain A, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SO2|B Chain B, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SO2|C Chain C, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SO2|D Chain D, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SOJ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|B Chain B, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|C Chain C, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|D Chain D, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|E Chain E, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|F Chain F, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|G Chain G, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|H Chain H, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|J Chain J, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|K Chain K, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|L Chain L, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|I Chain I, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
Length = 420
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 146/342 (42%), Gaps = 91/342 (26%)
Query: 95 LLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSP----------- 143
LL+ F IP + F+N+ LE+ Y +D P+HN HA DV + L P
Sbjct: 56 LLEIFKIPTQQFMNYFRALENGY-RDIPYHNRIHATDVLHAVWYLTTRPVPGLQQIHNGC 114
Query: 144 ---------------------------------ALEDVFTPLEIMAALFAATIHDVDHPG 170
L LE+MA AA +HD DHPG
Sbjct: 115 GTGNETDSDGRINHGRIAYISSKSCSNPDESYGCLSSNIPALELMALYVAAAMHDYDHPG 174
Query: 171 LTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVID 230
TN FL+ +++ A++YND SVLENHH A A+ L
Sbjct: 175 RTNAFLVATNAPQAVLYNDRSVLENHHAASAWNLY------------------------- 209
Query: 231 MVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLLAD 290
L + L +L+ + + R +VI+ +L+TD+ KH LA+
Sbjct: 210 ------------------LSRPEYNFLLHLDHVEFKRFRFLVIEAILATDLKKHFDFLAE 251
Query: 291 LKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEFFQ 350
+ V +G+ N DR+ V + + AD++ P K L+ KW + ++ EF++
Sbjct: 252 FNA--KANDVNSNGIEW-SNENDRLLVCQVCIKLADINGPAKVRDLHLKWTEGIVNEFYE 308
Query: 351 QGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
QGD+E L L ISP DR S + K Q FI +IV PL ++
Sbjct: 309 QGDEEANLGLPISPFMDRSSPQLAKLQESFITHIVGPLCNSY 350
>pdb|1XOZ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Tadalafil
pdb|1XP0|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Vardenafil
Length = 364
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 161/324 (49%), Gaps = 53/324 (16%)
Query: 94 DLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLE 153
+L++ F + + ++++++ +Y K+ +HN HA + Q L + +++ T LE
Sbjct: 71 NLVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLE 130
Query: 154 IMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDIL 213
I+A L AA HD+DHPG++NQFLIN++SELALMYNDESVLE+HH + C
Sbjct: 131 ILALLIAALSHDLDHPGVSNQFLINTNSELALMYNDESVLEHHHF---------DQC--- 178
Query: 214 CNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVI 273
+L + G IL L+ ++ +T K++
Sbjct: 179 --------------------------------LMILNSPGNQILSGLSIEEYKTTLKIIK 206
Query: 274 DMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKP 333
+L+TD++ ++ + ++ + L++ + L L+ DLS TKP
Sbjct: 207 QAILATDLALYIKRRGEFFELIRKNQFN------LEDPHQKELFLAMLMTACDLSAITKP 260
Query: 334 LPLYRKWVDLLMEEFFQQGDKER-ELNLDISPMCDRLSAT-IEKSQVGFIDYIVHPLWET 391
P+ ++ +L+ EFF QGD+ER ELN++ + + +R I QVGFID I L+E
Sbjct: 261 WPIQQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEA 320
Query: 392 WADLVHPDAQEILDMLEENRDWYQ 415
V D +LD +NR +Q
Sbjct: 321 LTH-VSEDCFPLLDGCRKNRQKWQ 343
>pdb|1T9S|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Gmp
pdb|1T9S|B Chain B, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Gmp
pdb|1TBF|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Sildenafil
Length = 347
Score = 138 bits (347), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 161/324 (49%), Gaps = 53/324 (16%)
Query: 94 DLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLE 153
+L++ F + + ++++++ +Y K+ +HN HA + Q L + +++ T LE
Sbjct: 71 NLVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLE 130
Query: 154 IMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDIL 213
I+A L AA HD+DHPG++NQFLIN++SELALMYNDESVLE+HH + C
Sbjct: 131 ILALLIAALSHDLDHPGVSNQFLINTNSELALMYNDESVLEHHHF---------DQC--- 178
Query: 214 CNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVI 273
+L + G IL L+ ++ +T K++
Sbjct: 179 --------------------------------LMILNSPGNQILSGLSIEEYKTTLKIIK 206
Query: 274 DMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKP 333
+L+TD++ ++ + ++ + L++ + L L+ DLS TKP
Sbjct: 207 QAILATDLALYIKRRGEFFELIRKNQFN------LEDPHQKELFLAMLMTACDLSAITKP 260
Query: 334 LPLYRKWVDLLMEEFFQQGDKER-ELNLDISPMCDRLSAT-IEKSQVGFIDYIVHPLWET 391
P+ ++ +L+ EFF QGD+ER ELN++ + + +R I QVGFID I L+E
Sbjct: 261 WPIQQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEA 320
Query: 392 WADLVHPDAQEILDMLEENRDWYQ 415
V D +LD +NR +Q
Sbjct: 321 LTH-VSEDCFPLLDGCRKNRQKWQ 343
>pdb|2CHM|A Chain A, Crystal Structure Of N2 Substituted Pyrazolo
Pyrimidinones- A Flipped Binding Mode In Pde5
pdb|3TGE|A Chain A, A Novel Series Of Potent And Selective Pde5 Inhibitor1
pdb|3TGG|A Chain A, A Novel Series Of Potent And Selective Pde5 Inhibitor2
Length = 326
Score = 138 bits (347), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 162/324 (50%), Gaps = 53/324 (16%)
Query: 94 DLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLE 153
+L++ F + + ++++++ +Y K+ +HN HA + Q L + +++ T LE
Sbjct: 50 NLVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLE 109
Query: 154 IMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDIL 213
I+A L AA HD+DHPG++NQFLIN++SELALMYNDESVLE+HH + C
Sbjct: 110 ILALLIAALSHDLDHPGVSNQFLINTNSELALMYNDESVLEHHHF---------DQC--- 157
Query: 214 CNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVI 273
+L + G IL L+ ++ +T K++
Sbjct: 158 --------------------------------LMILNSPGNQILSGLSIEEYKTTLKIIK 185
Query: 274 DMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKP 333
+L+TD++ ++ + ++ + L++ ++ L L+ DLS TKP
Sbjct: 186 QAILATDLALYIKRRGEFFELIRKNQFN------LEDPHEKELFLAMLMTACDLSAITKP 239
Query: 334 LPLYRKWVDLLMEEFFQQGDKER-ELNLDISPMCDRLSAT-IEKSQVGFIDYIVHPLWET 391
P+ ++ +L+ EFF QGD+ER ELN++ + + +R I QVGFID I L+E
Sbjct: 240 WPIQQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEA 299
Query: 392 WADLVHPDAQEILDMLEENRDWYQ 415
V D +LD +NR +Q
Sbjct: 300 LTH-VSEDCFPLLDGCRKNRQKWQ 322
>pdb|3HC8|A Chain A, Investigation Of Aminopyridiopyrazinones As Pde5
Inhibitors: Evaluation Of Modifications To The Central
Ring System.
pdb|3HDZ|A Chain A, Identification, Synthesis, And Sar Of Amino Substituted
Pyrido[3,2b]pryaziones As Potent And Selective Pde5
Inhibitors
Length = 324
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 162/324 (50%), Gaps = 53/324 (16%)
Query: 94 DLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLE 153
+L++ F + + ++++++ +Y K+ +HN HA + Q L + +++ T LE
Sbjct: 48 NLVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLE 107
Query: 154 IMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDIL 213
I+A L AA HD+DHPG++NQFLIN++SELALMYNDESVLE+HH + C
Sbjct: 108 ILALLIAALSHDLDHPGVSNQFLINTNSELALMYNDESVLEHHHF---------DQC--- 155
Query: 214 CNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVI 273
+L + G IL L+ ++ +T K++
Sbjct: 156 --------------------------------LMILNSPGNQILSGLSIEEYKTTLKIIK 183
Query: 274 DMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKP 333
+L+TD++ ++ + ++ + L++ ++ L L+ DLS TKP
Sbjct: 184 QAILATDLALYIKRRGEFFELIRKNQFN------LEDPHEKELFLAMLMTACDLSAITKP 237
Query: 334 LPLYRKWVDLLMEEFFQQGDKER-ELNLDISPMCDRLSAT-IEKSQVGFIDYIVHPLWET 391
P+ ++ +L+ EFF QGD+ER ELN++ + + +R I QVGFID I L+E
Sbjct: 238 WPIQQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEA 297
Query: 392 WADLVHPDAQEILDMLEENRDWYQ 415
V D +LD +NR +Q
Sbjct: 298 LTH-VSEDCFPLLDGCRKNRQKWQ 320
>pdb|2R8Q|A Chain A, Structure Of Lmjpdeb1 In Complex With Ibmx
pdb|2R8Q|B Chain B, Structure Of Lmjpdeb1 In Complex With Ibmx
Length = 359
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 150/328 (45%), Gaps = 56/328 (17%)
Query: 92 NRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTP 151
N L + F +T +NF++ Y + P+HN H DV Q+ + L + ++ T
Sbjct: 69 NSGLPEKFGCREQTLLNFILQCRRRY-RRVPYHNFYHVVDVCQTLHTYLYTGKASELLTE 127
Query: 152 LEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYN---DESVLENHHLAVAFKLLQNE 208
LE L A +HD+DH G+ N F + + S L ++ + + SVLE HH ++A ++L +
Sbjct: 128 LECYVLLVTALVHDLDHMGVNNSFYLKTDSPLGILSSASGNNSVLEVHHCSLAIEILSDP 187
Query: 209 GCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTL 268
D+ L+ Q++A A++ L
Sbjct: 188 AADVFEGLS---------------------GQDVAYAYRAL------------------- 207
Query: 269 RKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLS 328
ID VL+TDM+KH L+ ++A SG DN T R V+E L+ D+S
Sbjct: 208 ----IDCVLATDMAKHADALSRFT------ELATSG-FEKDNDTHRRLVMETLIKAGDVS 256
Query: 329 NPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSAT-IEKSQVGFIDYIVHP 387
N TKP R W + EEF++QGD E+E +++ PM DR + + Q+GFID++
Sbjct: 257 NVTKPFETSRMWAMAVTEEFYRQGDMEKEKGVEVLPMFDRSKNNELARGQIGFIDFVAGK 316
Query: 388 LWETWADLVHPDAQEILDMLEENRDWYQ 415
+ + Q +D + NR +Q
Sbjct: 317 FFRDIVGNLFHGMQWCVDTVNSNRAKWQ 344
>pdb|3ITM|A Chain A, Catalytic Domain Of Hpde2a
pdb|3ITM|B Chain B, Catalytic Domain Of Hpde2a
pdb|3ITM|C Chain C, Catalytic Domain Of Hpde2a
pdb|3ITM|D Chain D, Catalytic Domain Of Hpde2a
pdb|3ITU|A Chain A, Hpde2a Catalytic Domain Complexed With Ibmx
pdb|3ITU|B Chain B, Hpde2a Catalytic Domain Complexed With Ibmx
pdb|3ITU|C Chain C, Hpde2a Catalytic Domain Complexed With Ibmx
pdb|3ITU|D Chain D, Hpde2a Catalytic Domain Complexed With Ibmx
Length = 345
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 151/344 (43%), Gaps = 55/344 (15%)
Query: 70 SFTGEKLPKHGVETASEEELGNNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHA 129
++T LP+ A L + + + + I T F + ++ Y +D P+HN HA
Sbjct: 30 TYTPRSLPEDDTSMAILSML-QDMNFINNYKIDCPTLARFCLMVKKGY-RDPPYHNWMHA 87
Query: 130 ADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYND 189
V+ +L + L + +EI A + HD+DH G N F + S S LA +Y+
Sbjct: 88 FSVSHFCYLLYKNLELTNYLEDIEIFALFISCMCHDLDHRGTNNSFQVASKSVLAALYSS 147
Query: 190 E-SVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKL 248
E SV+E HH A A +L GC+I + ++K Q + ++ D++L+T
Sbjct: 148 EGSVMERHHFAQAIAILNTHGCNIFDHFSRKDYQRMLDLMRDIILAT------------- 194
Query: 249 LQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLL 308
D++ H+ + DL+ M E G
Sbjct: 195 -------------------------------DLAHHLRIFKDLQKMAEV------GYDRN 217
Query: 309 DNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDR 368
+ R+ + + C DLS+ TK RK +L+ +EFF QGD E+ + M DR
Sbjct: 218 NKQHHRLLLCLLMTSC-DLSDQTKGWKTTRKIAELIYKEFFSQGDLEKAMGNRPMEMMDR 276
Query: 369 LSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDMLEENRD 412
A I + Q+ F+++I P+++ DL P A E+ + + NR+
Sbjct: 277 EKAYIPELQISFMEHIAMPIYKLLQDLF-PKAAELYERVASNRE 319
>pdb|1Z1L|A Chain A, The Crystal Structure Of The Phosphodiesterase 2a
Catalytic Domain
Length = 345
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 151/344 (43%), Gaps = 55/344 (15%)
Query: 70 SFTGEKLPKHGVETASEEELGNNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHA 129
++T LP+ A L + + + + I T F + ++ Y +D P+HN HA
Sbjct: 30 TYTPRSLPEDDTSMAILSML-QDMNFINNYKIDCPTLARFCLMVKKGY-RDPPYHNWMHA 87
Query: 130 ADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYND 189
V+ +L + L + +EI A + HD+DH G N F + S S LA +Y+
Sbjct: 88 FSVSHFCYLLYKNLELTNYLEDIEIFALFISCMCHDLDHRGTNNSFQVASKSVLAALYSS 147
Query: 190 E-SVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKL 248
E SV+E HH A A +L GC+I + ++K Q + ++ D++L+T
Sbjct: 148 EGSVMERHHFAQAIAILNTHGCNIFDHFSRKDYQRMLDLMRDIILAT------------- 194
Query: 249 LQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLL 308
D++ H+ + DL+ M E G
Sbjct: 195 -------------------------------DLAHHLRIFKDLQKMAEV------GYDRN 217
Query: 309 DNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDR 368
+ R+ + + C DLS+ TK RK +L+ +EFF QGD E+ + M DR
Sbjct: 218 NKQHHRLLLCLLMTSC-DLSDQTKGWKTTRKIAELIYKEFFSQGDLEKAMGNRPMEMMDR 276
Query: 369 LSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDMLEENRD 412
A I + Q+ F+++I P+++ DL P A E+ + + NR+
Sbjct: 277 EKAYIPELQISFMEHIAMPIYKLLQDLF-PKAAELYERVASNRE 319
>pdb|3IBJ|A Chain A, X-Ray Structure Of Pde2a
pdb|3IBJ|B Chain B, X-Ray Structure Of Pde2a
Length = 691
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 151/344 (43%), Gaps = 55/344 (15%)
Query: 70 SFTGEKLPKHGVETASEEELGNNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHA 129
++T LP+ A L + + + + I T F + ++ Y +D P+HN HA
Sbjct: 391 TYTPRSLPEDDTSMAILSML-QDMNFINNYKIDCPTLARFCLMVKKGY-RDPPYHNWMHA 448
Query: 130 ADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYND 189
V+ +L + L + +EI A + HD+DH G N F + S S LA +Y+
Sbjct: 449 FSVSHFCYLLYKNLELTNYLEDIEIFALFISCMCHDLDHRGTNNSFQVASKSVLAALYSS 508
Query: 190 E-SVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKL 248
E SV+E HH A A +L GC+I + ++K Q + ++ D++L+T
Sbjct: 509 EGSVMERHHFAQAIAILNTHGCNIFDHFSRKDYQRMLDLMRDIILAT------------- 555
Query: 249 LQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLL 308
D++ H+ + DL+ M E G
Sbjct: 556 -------------------------------DLAHHLRIFKDLQKMAEV------GYDRN 578
Query: 309 DNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDR 368
+ R+ + + C DLS+ TK RK +L+ +EFF QGD E+ + M DR
Sbjct: 579 NKQHHRLLLCLLMTSC-DLSDQTKGWKTTRKIAELIYKEFFSQGDLEKAMGNRPMEMMDR 637
Query: 369 LSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDMLEENRD 412
A I + Q+ F+++I P+++ DL P A E+ + + NR+
Sbjct: 638 EKAYIPELQISFMEHIAMPIYKLLQDLF-PKAAELYERVASNRE 680
>pdb|3V93|A Chain A, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|B Chain B, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|C Chain C, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|D Chain D, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|E Chain E, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|F Chain F, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|G Chain G, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|H Chain H, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V94|A Chain A, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|B Chain B, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|C Chain C, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|D Chain D, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|E Chain E, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|F Chain F, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|G Chain G, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|H Chain H, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
Length = 345
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/319 (27%), Positives = 146/319 (45%), Gaps = 67/319 (21%)
Query: 103 AKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNS--PALEDVFTPLEIMAALFA 160
A+ + + +E++Y + NP+HN+ HAADV Q T L+++ P +E + TPLE AA FA
Sbjct: 79 AQKWAFLVAAVENNY-RPNPYHNAIHAADVLQGTFSLVSAAKPLMEHL-TPLECKAAAFA 136
Query: 161 ATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQ 220
A HDV HPG TN FL ++ ++ + LE H A AF+LL D +++
Sbjct: 137 ALTHDVCHPGRTNAFLAAVQDPVSFKFSGKGTLEQLHTATAFELLNVTEFDFTSSMDNAS 196
Query: 221 KQTLRKMVIDMVLSTD--IRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLS 278
+ +V ++ TD + S+ +A L G D C ++ + +L
Sbjct: 197 FLEFKNIVSHLIGHTDMSLHSETVAKHGAKLSAGGFDCTCKEDRLEALSL---------- 246
Query: 279 TDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYR 338
L+H AD+ ++ + + R
Sbjct: 247 ------------------------------------------LLHAADIGASSRGVAIAR 264
Query: 339 KWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETWADLVH- 397
KW+ ++++EF Q + ER L ++P + S ++EKSQ+ F+D+ V P + DL+H
Sbjct: 265 KWL-VILQEFADQAEDERRRGLPVTPGFETPS-SVEKSQIPFLDFFVIPTF----DLLHQ 318
Query: 398 --PDAQEILDMLEENRDWY 414
P +E L L + R+ Y
Sbjct: 319 LFPSIEEPLHNLRKLRELY 337
>pdb|3BJC|A Chain A, Crystal Structure Of The Pde5a Catalytic Domain In Complex
With A Novel Inhibitor
Length = 878
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 149/324 (45%), Gaps = 54/324 (16%)
Query: 94 DLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLE 153
+L++ F + + ++++++ +Y K+ +HN HA + Q L + +++ T LE
Sbjct: 586 NLVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLE 645
Query: 154 IMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDIL 213
I+A L AA HD+DH G+ N ++ S LA +Y S++E+HH
Sbjct: 646 ILALLIAALSHDLDHRGVNNSYIQRSEHPLAQLYC-HSIMEHHHF--------------- 689
Query: 214 CNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVI 273
D L +L + G IL L+ ++ +T K++
Sbjct: 690 ----------------DQCL-------------MILNSPGNQILSGLSIEEYKTTLKIIK 720
Query: 274 DMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKP 333
+L+TD++ ++ + ++ + L++ + L L+ DLS TKP
Sbjct: 721 QAILATDLALYIKRRGEFFELIRKNQFN------LEDPHQKELFLAMLMTACDLSAITKP 774
Query: 334 LPLYRKWVDLLMEEFFQQGDKER-ELNLDISPMCDRLSAT-IEKSQVGFIDYIVHPLWET 391
P+ ++ +L+ EFF QGD+ER ELN++ + + +R I QVGFID I L+E
Sbjct: 775 WPIQQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEA 834
Query: 392 WADLVHPDAQEILDMLEENRDWYQ 415
V D +LD +NR +Q
Sbjct: 835 LTH-VSEDCFPLLDGCRKNRQKWQ 857
>pdb|1T9R|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a
Length = 366
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 149/324 (45%), Gaps = 54/324 (16%)
Query: 94 DLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLE 153
+L++ F + + ++++++ +Y K+ +HN HA + Q L + +++ T LE
Sbjct: 74 NLVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLE 133
Query: 154 IMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDIL 213
I+A L AA HD+DH G+ N ++ S LA +Y S++E+HH
Sbjct: 134 ILALLIAALSHDLDHRGVNNSYIQRSEHPLAQLYC-HSIMEHHHF--------------- 177
Query: 214 CNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVI 273
D L +L + G IL L+ ++ +T K++
Sbjct: 178 ----------------DQCLM-------------ILNSPGNQILSGLSIEEYKTTLKIIK 208
Query: 274 DMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKP 333
+L+TD++ ++ + ++ + L++ + L L+ DLS TKP
Sbjct: 209 QAILATDLALYIKRRGEFFELIRKNQFN------LEDPHQKELFLAMLMTACDLSAITKP 262
Query: 334 LPLYRKWVDLLMEEFFQQGDKER-ELNLDISPMCDRLSAT-IEKSQVGFIDYIVHPLWET 391
P+ ++ +L+ EFF QGD+ER ELN++ + + +R I QVGFID I L+E
Sbjct: 263 WPIQQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEA 322
Query: 392 WADLVHPDAQEILDMLEENRDWYQ 415
V D +LD +NR +Q
Sbjct: 323 LTH-VSEDCFPLLDGCRKNRQKWQ 345
>pdb|3SHY|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3SHZ|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3SIE|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3SIE|B Chain B, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3TSE|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3TSF|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
Length = 347
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 149/324 (45%), Gaps = 54/324 (16%)
Query: 94 DLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLE 153
+L++ F + + ++++++ +Y K+ +HN HA + Q L + +++ T LE
Sbjct: 70 NLVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLE 129
Query: 154 IMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDIL 213
I+A L AA HD+DH G+ N ++ S LA +Y S++E+HH + C
Sbjct: 130 ILALLIAALSHDLDHRGVNNSYIQRSEHPLAQLYC-HSIMEHHHF---------DQC--- 176
Query: 214 CNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVI 273
+L + G IL L+ ++ +T K++
Sbjct: 177 --------------------------------LMILNSPGNQILSGLSIEEYKTTLKIIK 204
Query: 274 DMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKP 333
+L+TD++ ++ + ++ + L++ + L L+ DLS TKP
Sbjct: 205 QAILATDLALYIKRRGEFFELIRKNQFN------LEDPHQKELFLAMLMTACDLSAITKP 258
Query: 334 LPLYRKWVDLLMEEFFQQGDKER-ELNLDISPMCDRLSAT-IEKSQVGFIDYIVHPLWET 391
P+ ++ +L+ EFF QGD+ER ELN++ + + +R I QVGFID I L+E
Sbjct: 259 WPIQQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEA 318
Query: 392 WADLVHPDAQEILDMLEENRDWYQ 415
V D +LD +NR +Q
Sbjct: 319 LTH-VSEDCFPLLDGCRKNRQKWQ 341
>pdb|3B2R|A Chain A, Crystal Structure Of Pde5a1 Catalytic Domain In Complex
With Vardenafil
pdb|3B2R|B Chain B, Crystal Structure Of Pde5a1 Catalytic Domain In Complex
With Vardenafil
Length = 330
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 149/324 (45%), Gaps = 54/324 (16%)
Query: 94 DLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLE 153
+L++ F + + ++++++ +Y K+ +HN HA + Q L + +++ T LE
Sbjct: 53 NLVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLE 112
Query: 154 IMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDIL 213
I+A L AA HD+DH G+ N ++ S LA +Y S++E+HH + C
Sbjct: 113 ILALLIAALSHDLDHRGVNNSYIQRSEHPLAQLYC-HSIMEHHHF---------DQC--- 159
Query: 214 CNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVI 273
+L + G IL L+ ++ +T K++
Sbjct: 160 --------------------------------LMILNSPGNQILSGLSIEEYKTTLKIIK 187
Query: 274 DMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKP 333
+L+TD++ ++ + ++ + L++ + L L+ DLS TKP
Sbjct: 188 QAILATDLALYIKRRGEFFELIRKNQFN------LEDPHQKELFLAMLMTACDLSAITKP 241
Query: 334 LPLYRKWVDLLMEEFFQQGDKER-ELNLDISPMCDRLSAT-IEKSQVGFIDYIVHPLWET 391
P+ ++ +L+ EFF QGD+ER ELN++ + + +R I QVGFID I L+E
Sbjct: 242 WPIQQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEA 301
Query: 392 WADLVHPDAQEILDMLEENRDWYQ 415
V D +LD +NR +Q
Sbjct: 302 LTH-VSEDCFPLLDGCRKNRQKWQ 324
>pdb|1RKP|A Chain A, Crystal Structure Of Pde5a1-Ibmx
Length = 326
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 149/324 (45%), Gaps = 54/324 (16%)
Query: 94 DLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLE 153
+L++ F + + ++++++ +Y K+ +HN HA + Q L + +++ T LE
Sbjct: 49 NLVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLE 108
Query: 154 IMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDIL 213
I+A L AA HD+DH G+ N ++ S LA +Y S++E+HH + C
Sbjct: 109 ILALLIAALSHDLDHRGVNNSYIQRSEHPLAQLYC-HSIMEHHHF---------DQC--- 155
Query: 214 CNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVI 273
+L + G IL L+ ++ +T K++
Sbjct: 156 --------------------------------LMILNSPGNQILSGLSIEEYKTTLKIIK 183
Query: 274 DMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKP 333
+L+TD++ ++ + ++ + L++ + L L+ DLS TKP
Sbjct: 184 QAILATDLALYIKRRGEFFELIRKNQFN------LEDPHQKELFLAMLMTACDLSAITKP 237
Query: 334 LPLYRKWVDLLMEEFFQQGDKER-ELNLDISPMCDRLSAT-IEKSQVGFIDYIVHPLWET 391
P+ ++ +L+ EFF QGD+ER ELN++ + + +R I QVGFID I L+E
Sbjct: 238 WPIQQRLAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEA 297
Query: 392 WADLVHPDAQEILDMLEENRDWYQ 415
V D +LD +NR +Q
Sbjct: 298 LTH-VSEDCFPLLDGCRKNRQKWQ 320
>pdb|2H40|A Chain A, Crystal Structure Of The Catalytic Domain Of Unliganded
Pde5
pdb|2H42|A Chain A, Crystal Structure Of Pde5 In Complex With Sildenafil
pdb|2H42|B Chain B, Crystal Structure Of Pde5 In Complex With Sildenafil
pdb|2H42|C Chain C, Crystal Structure Of Pde5 In Complex With Sildenafil
pdb|2H44|A Chain A, Crystal Structure Of Pde5a1 In Complex With Icarisid Ii
Length = 326
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 149/324 (45%), Gaps = 54/324 (16%)
Query: 94 DLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLE 153
+L++ F + + ++++++ +Y K+ +HN HA + Q L + +++ T LE
Sbjct: 49 NLVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLE 108
Query: 154 IMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDIL 213
I+A L AA HD+DH G+ N ++ S LA +Y S++E+HH + C
Sbjct: 109 ILALLIAALSHDLDHRGVNNSYIQRSEHPLAQLYC-HSIMEHHHF---------DQC--- 155
Query: 214 CNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVI 273
+L + G IL L+ ++ +T K++
Sbjct: 156 --------------------------------LMILNSPGNQILSGLSIEEYKTTLKIIK 183
Query: 274 DMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKP 333
+L+TD++ ++ + ++ + L++ + L L+ DLS TKP
Sbjct: 184 QAILATDLALYIKRRGEFFELIRKNQFN------LEDPHQKELFLAMLMTACDLSAITKP 237
Query: 334 LPLYRKWVDLLMEEFFQQGDKER-ELNLDISPMCDRLSAT-IEKSQVGFIDYIVHPLWET 391
P+ ++ +L+ EFF QGD+ER ELN++ + + +R I QVGFID I L+E
Sbjct: 238 WPIQQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEA 297
Query: 392 WADLVHPDAQEILDMLEENRDWYQ 415
V D +LD +NR +Q
Sbjct: 298 LTH-VSEDCFPLLDGCRKNRQKWQ 320
>pdb|1UDT|A Chain A, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Sildenafil(Viagra)
pdb|1UDU|A Chain A, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Tadalafil(Cialis)
pdb|1UDU|B Chain B, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Tadalafil(Cialis)
pdb|1UHO|A Chain A, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Vardenafil(Levitra)
Length = 324
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 149/324 (45%), Gaps = 54/324 (16%)
Query: 94 DLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLE 153
+L++ F + + ++++++ +Y K+ +HN HA + Q L + +++ T LE
Sbjct: 47 NLVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLE 106
Query: 154 IMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDIL 213
I+A L AA HD+DH G+ N ++ S LA +Y S++E+HH + C
Sbjct: 107 ILALLIAALSHDLDHRGVNNSYIQRSEHPLAQLYC-HSIMEHHHF---------DQC--- 153
Query: 214 CNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVI 273
+L + G IL L+ ++ +T K++
Sbjct: 154 --------------------------------LMILNSPGNQILSGLSIEEYKTTLKIIK 181
Query: 274 DMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKP 333
+L+TD++ ++ + ++ + L++ + L L+ DLS TKP
Sbjct: 182 QAILATDLALYIKRRGEFFELIRKNQFN------LEDPHQKELFLAMLMTACDLSAITKP 235
Query: 334 LPLYRKWVDLLMEEFFQQGDKER-ELNLDISPMCDRLSAT-IEKSQVGFIDYIVHPLWET 391
P+ ++ +L+ EFF QGD+ER ELN++ + + +R I QVGFID I L+E
Sbjct: 236 WPIQQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEA 295
Query: 392 WADLVHPDAQEILDMLEENRDWYQ 415
V D +LD +NR +Q
Sbjct: 296 LTH-VSEDCFPLLDGCRKNRQKWQ 318
>pdb|3JWQ|A Chain A, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWQ|B Chain B, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWQ|C Chain C, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWQ|D Chain D, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWR|A Chain A, Crystal Structure Of Chimeric Pde5PDE6 CATALYTIC DOMAIN
Complexed With 3-Isobutyl-1-Methylxanthine (Ibmx) And
Pde6 Gamma-Subunit Inhibitory Peptide 70-87.
pdb|3JWR|B Chain B, Crystal Structure Of Chimeric Pde5PDE6 CATALYTIC DOMAIN
Complexed With 3-Isobutyl-1-Methylxanthine (Ibmx) And
Pde6 Gamma-Subunit Inhibitory Peptide 70-87
Length = 330
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 147/324 (45%), Gaps = 54/324 (16%)
Query: 94 DLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLE 153
+L++ F + + ++++++ +Y K+ +HN HA + Q L + +++ T LE
Sbjct: 53 NLVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLE 112
Query: 154 IMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDIL 213
I+A L AA HD+DH G+ N ++ S LA +Y S++E+HH + C
Sbjct: 113 ILALLIAALSHDLDHRGVNNSYIQRSEHPLAQLYC-HSIMEHHHF---------DQC--- 159
Query: 214 CNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVI 273
+L + G IL L+ ++ +T K++
Sbjct: 160 --------------------------------LMILNSPGNQILSGLSIEEYKTTLKIIK 187
Query: 274 DMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKP 333
+L+TD++ ++ + ++ + L++ + L L+ DLS TKP
Sbjct: 188 QAILATDLALYIKRRGEFFELIRKNQFN------LEDPHQKELFLAMLMTACDLSAITKP 241
Query: 334 LPLYRKWVDLLMEEFFQQGDKERE-LNLDISPMCDRLSA-TIEKSQVGFIDYIVHPLWET 391
P+ ++ +L+ EF++QGD ER L PM DR + K QVGFID++ L+E
Sbjct: 242 WPIQQRIAELVATEFWEQGDLERTVLQQQPIPMMDRNKRDELPKLQVGFIDFVCTQLYEA 301
Query: 392 WADLVHPDAQEILDMLEENRDWYQ 415
V D +LD +NR +Q
Sbjct: 302 LTH-VSEDCFPLLDGCRKNRQKWQ 324
>pdb|3HQY|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
pdb|3HQZ|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
pdb|3HR1|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
Length = 380
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 56/314 (17%)
Query: 106 FINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHD 165
F+M+++ +Y + P+HN HA V +L + +FT LE L A HD
Sbjct: 94 LCRFIMSVKKNY-RRVPYHNWKHAVTVAHCMYAILQNN--NGLFTDLERKGLLIACLCHD 150
Query: 166 VDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLR 225
+DH G +N +L LA +Y+ S +E HH + +LQ EG +I L+ + + +
Sbjct: 151 LDHRGFSNSYLQKFDHPLAALYST-STMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVL 209
Query: 226 KMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHM 285
+++ +++TD LA+ F N+KQ
Sbjct: 210 EIIRKAIIATD-----LALYFG-------------NRKQ--------------------- 230
Query: 286 SLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLM 345
L+ M +T G L L N + R +V+ ++ DL + TK P+ + + +
Sbjct: 231 -----LEEMYQT------GSLNLHNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIY 279
Query: 346 EEFFQQGDKERELNLDISPMCDR-LSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEIL 404
EF+ +GD+ ++L + PM DR + + Q+GF + + P + T ++ P + +L
Sbjct: 280 AEFWAEGDEMKKLGIQPIPMMDRDKRDEVPQGQLGFYNAVAIPCYTTLTQIL-PPTEPLL 338
Query: 405 DMLEENRDWYQNYI 418
+N + ++ I
Sbjct: 339 KACRDNLNQWEKVI 352
>pdb|3HQW|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
Length = 376
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 139/311 (44%), Gaps = 56/311 (18%)
Query: 109 FMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDH 168
F+M+++ +Y + P+HN HA V +L + +FT LE L A HD+DH
Sbjct: 93 FIMSVKKNY-RRVPYHNWKHAVTVAHCMYAILQNN--NGLFTDLERKGLLIACLCHDLDH 149
Query: 169 PGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 228
G +N +L LA +Y+ S +E HH + +LQ EG +I L+ + + + +++
Sbjct: 150 RGFSNSYLQKFDHPLAALYST-STMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEII 208
Query: 229 IDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLL 288
+++TD LA+ F N+KQ
Sbjct: 209 RKAIIATD-----LALYFG-------------NRKQ------------------------ 226
Query: 289 ADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEF 348
L+ M +T G L L N + R +V+ ++ DL + TK P+ + + + EF
Sbjct: 227 --LEEMYQT------GSLNLHNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEF 278
Query: 349 FQQGDKERELNLDISPMCDR-LSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDML 407
+ +GD+ ++L + PM DR + + Q+GF + + P + T ++ P + +L
Sbjct: 279 WAEGDEMKKLGIQPIPMMDRDKRDEVPQGQLGFYNAVAIPCYTTLTQIL-PPTEPLLKAC 337
Query: 408 EENRDWYQNYI 418
+N + ++ I
Sbjct: 338 RDNLNQWEKVI 348
>pdb|3SN7|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SN7|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNI|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNI|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNL|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNL|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|4FCB|A Chain A, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCB|B Chain B, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCD|A Chain A, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCD|B Chain B, Potent And Selective Phosphodiesterase 10a Inhibitors
Length = 345
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 141/319 (44%), Gaps = 56/319 (17%)
Query: 109 FMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDH 168
F+M+++ +Y + P+HN HA V +L + +FT LE L A HD+DH
Sbjct: 67 FIMSVKKNY-RRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDLERKGLLIACLCHDLDH 123
Query: 169 PGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 228
G +N +L LA +Y+ S +E HH + +LQ EG +I L+ + + + +++
Sbjct: 124 RGFSNSYLQKFDHPLAALYST-STMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEII 182
Query: 229 IDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLL 288
+++TD LA+ F N+KQ
Sbjct: 183 RKAIIATD-----LALYFG-------------NRKQ------------------------ 200
Query: 289 ADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEF 348
L+ M +T G L L+N + R +V+ ++ DL + TK P+ + + + EF
Sbjct: 201 --LEEMYQT------GSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEF 252
Query: 349 FQQGDKERELNLDISPMCDR-LSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDML 407
+ +GD+ ++L + PM DR + + Q+GF + + P + T ++ P + +L
Sbjct: 253 WAEGDEMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQIL-PPTEPLLKAC 311
Query: 408 EENRDWYQNYIVHPLWETW 426
+N ++ I TW
Sbjct: 312 RDNLSQWEKVIRGEETATW 330
>pdb|2WEY|A Chain A, Human Pde-Papaverine Complex Obtained By Ligand Soaking Of
Cross-Linked Protein Crystals
pdb|2WEY|B Chain B, Human Pde-Papaverine Complex Obtained By Ligand Soaking Of
Cross-Linked Protein Crystals
Length = 343
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 141/319 (44%), Gaps = 56/319 (17%)
Query: 109 FMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDH 168
F+M+++ +Y + P+HN HA V +L + +FT LE L A HD+DH
Sbjct: 65 FIMSVKKNY-RRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDLERKGLLIACLCHDLDH 121
Query: 169 PGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 228
G +N +L LA +Y+ S +E HH + +LQ EG +I L+ + + + +++
Sbjct: 122 RGFSNSYLQKFDHPLAALYST-STMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEII 180
Query: 229 IDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLL 288
+++TD LA+ F N+KQ
Sbjct: 181 RKAIIATD-----LALYFG-------------NRKQ------------------------ 198
Query: 289 ADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEF 348
L+ M +T G L L+N + R +V+ ++ DL + TK P+ + + + EF
Sbjct: 199 --LEEMYQT------GSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEF 250
Query: 349 FQQGDKERELNLDISPMCDR-LSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDML 407
+ +GD+ ++L + PM DR + + Q+GF + + P + T ++ P + +L
Sbjct: 251 WAEGDEMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQIL-PPTEPLLKAC 309
Query: 408 EENRDWYQNYIVHPLWETW 426
+N ++ I TW
Sbjct: 310 RDNLSQWEKVIRGEETATW 328
>pdb|4AEL|A Chain A, Pde10a In Complex With The Inhibitor Az5
pdb|4AEL|B Chain B, Pde10a In Complex With The Inhibitor Az5
Length = 344
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 141/319 (44%), Gaps = 56/319 (17%)
Query: 109 FMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDH 168
F+M+++ +Y + P+HN HA V +L + +FT LE L A HD+DH
Sbjct: 66 FIMSVKKNY-RRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDLERKGLLIACLCHDLDH 122
Query: 169 PGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 228
G +N +L LA +Y+ S +E HH + +LQ EG +I L+ + + + +++
Sbjct: 123 RGFSNSYLQKFDHPLAALYST-STMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEII 181
Query: 229 IDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLL 288
+++TD LA+ F N+KQ
Sbjct: 182 RKAIIATD-----LALYFG-------------NRKQ------------------------ 199
Query: 289 ADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEF 348
L+ M +T G L L+N + R +V+ ++ DL + TK P+ + + + EF
Sbjct: 200 --LEEMYQT------GSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEF 251
Query: 349 FQQGDKERELNLDISPMCDR-LSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDML 407
+ +GD+ ++L + PM DR + + Q+GF + + P + T ++ P + +L
Sbjct: 252 WAEGDEMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQIL-PPTEPLLKAC 310
Query: 408 EENRDWYQNYIVHPLWETW 426
+N ++ I TW
Sbjct: 311 RDNLSQWEKVIRGEETATW 329
>pdb|2O8H|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|2OVV|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|2OVY|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|3QPN|A Chain A, Structure Of Pde10-Inhibitor Complex
pdb|3QPO|A Chain A, Structure Of Pde10-Inhibitor Complex
pdb|3QPP|A Chain A, Structure Of Pde10-Inhibitor Complex
Length = 362
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 139/311 (44%), Gaps = 56/311 (18%)
Query: 109 FMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDH 168
F+M+++ +Y + P+HN HA V +L + +FT LE L A HD+DH
Sbjct: 79 FIMSVKKNY-RRVPYHNWKHAVTVAHCMYAILQNN--NGLFTDLERKGLLIACLCHDLDH 135
Query: 169 PGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 228
G +N +L LA +Y+ S +E HH + +LQ EG +I L+ + + + +++
Sbjct: 136 RGFSNSYLQKFDHPLAALYST-STMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEII 194
Query: 229 IDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLL 288
+++TD LA+ F N+KQ
Sbjct: 195 RKAIIATD-----LALYFG-------------NRKQ------------------------ 212
Query: 289 ADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEF 348
L+ M +T G L L N + R +V+ ++ DL + TK P+ + + + EF
Sbjct: 213 --LEEMYQT------GSLNLHNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEF 264
Query: 349 FQQGDKERELNLDISPMCDR-LSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDML 407
+ +GD+ ++L + PM DR + + Q+GF + + P + T ++ P + +L
Sbjct: 265 WAEGDEMKKLGIQPIPMMDRDKRDEVPQGQLGFYNAVAIPCYTTLTQIL-PPTEPLLKAC 323
Query: 408 EENRDWYQNYI 418
+N + ++ I
Sbjct: 324 RDNLNQWEKVI 334
>pdb|4DDL|A Chain A, Pde10a Crystal Structure Complexed With Novel Inhibitor
pdb|4DDL|B Chain B, Pde10a Crystal Structure Complexed With Novel Inhibitor
Length = 338
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 141/319 (44%), Gaps = 56/319 (17%)
Query: 109 FMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDH 168
F+M+++ +Y + P+HN HA V +L + +FT LE L A HD+DH
Sbjct: 60 FIMSVKKNY-RRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDLERKGLLIACLCHDLDH 116
Query: 169 PGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 228
G +N +L LA +Y+ S +E HH + +LQ EG +I L+ + + + +++
Sbjct: 117 RGFSNSYLQKFDHPLAALYST-STMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEII 175
Query: 229 IDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLL 288
+++TD LA+ F N+KQ
Sbjct: 176 RKAIIATD-----LALYFG-------------NRKQ------------------------ 193
Query: 289 ADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEF 348
L+ M +T G L L+N + R +V+ ++ DL + TK P+ + + + EF
Sbjct: 194 --LEEMYQT------GSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEF 245
Query: 349 FQQGDKERELNLDISPMCDR-LSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDML 407
+ +GD+ ++L + PM DR + + Q+GF + + P + T ++ P + +L
Sbjct: 246 WAEGDEMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQIL-PPTEPLLKAC 304
Query: 408 EENRDWYQNYIVHPLWETW 426
+N ++ I TW
Sbjct: 305 RDNLSQWEKVIRGEETATW 323
>pdb|4DFF|A Chain A, The Sar Development Of Dihydroimidazoisoquinoline
Derivatives As Phosphodiesterase 10a Inhibitors For The
Treatment Of Schizophrenia
pdb|4DFF|B Chain B, The Sar Development Of Dihydroimidazoisoquinoline
Derivatives As Phosphodiesterase 10a Inhibitors For The
Treatment Of Schizophrenia
Length = 352
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 141/319 (44%), Gaps = 56/319 (17%)
Query: 109 FMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDH 168
F+M+++ +Y + P+HN HA V +L + +FT LE L A HD+DH
Sbjct: 74 FIMSVKKNY-RRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDLERKGLLIACLCHDLDH 130
Query: 169 PGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 228
G +N +L LA +Y+ S +E HH + +LQ EG +I L+ + + + +++
Sbjct: 131 RGFSNSYLQKFDHPLAALYST-STMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEII 189
Query: 229 IDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLL 288
+++TD LA+ F N+KQ
Sbjct: 190 RKAIIATD-----LALYFG-------------NRKQ------------------------ 207
Query: 289 ADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEF 348
L+ M +T G L L+N + R +V+ ++ DL + TK P+ + + + EF
Sbjct: 208 --LEEMYQT------GSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEF 259
Query: 349 FQQGDKERELNLDISPMCDR-LSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDML 407
+ +GD+ ++L + PM DR + + Q+GF + + P + T ++ P + +L
Sbjct: 260 WAEGDEMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQIL-PPTEPLLKAC 318
Query: 408 EENRDWYQNYIVHPLWETW 426
+N ++ I TW
Sbjct: 319 RDNLSQWEKVIRGEETATW 337
>pdb|2Y0J|A Chain A, Triazoloquinazolines As A Novel Class Of Phosphodiesterase
10a (Pde10a) Inhibitors, Part 2, Lead-Optimisation.
pdb|2Y0J|B Chain B, Triazoloquinazolines As A Novel Class Of Phosphodiesterase
10a (Pde10a) Inhibitors, Part 2, Lead-Optimisation
Length = 340
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 141/319 (44%), Gaps = 56/319 (17%)
Query: 109 FMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDH 168
F+M+++ +Y + P+HN HA V +L + +FT LE L A HD+DH
Sbjct: 70 FIMSVKKNY-RRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDLERKGLLIACLCHDLDH 126
Query: 169 PGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 228
G +N +L LA +Y+ S +E HH + +LQ EG +I L+ + + + +++
Sbjct: 127 RGFSNSYLQKFDHPLAALYST-STMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEII 185
Query: 229 IDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLL 288
+++TD LA+ F N+KQ
Sbjct: 186 RKAIIATD-----LALYFG-------------NRKQ------------------------ 203
Query: 289 ADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEF 348
L+ M +T G L L+N + R +V+ ++ DL + TK P+ + + + EF
Sbjct: 204 --LEEMYQT------GSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEF 255
Query: 349 FQQGDKERELNLDISPMCDR-LSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDML 407
+ +GD+ ++L + PM DR + + Q+GF + + P + T ++ P + +L
Sbjct: 256 WAEGDEMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQIL-PPTEPLLKAC 314
Query: 408 EENRDWYQNYIVHPLWETW 426
+N ++ I TW
Sbjct: 315 RDNLSQWEKVIRGEETATW 333
>pdb|2OUN|A Chain A, Crystal Structure Of Pde10a2 In Complex With Amp
pdb|2OUN|B Chain B, Crystal Structure Of Pde10a2 In Complex With Amp
pdb|2OUP|A Chain A, Crystal Structure Of Pde10a
pdb|2OUP|B Chain B, Crystal Structure Of Pde10a
pdb|2OUQ|A Chain A, Crystal Structure Of Pde10a2 In Complex With Gmp
pdb|2OUQ|B Chain B, Crystal Structure Of Pde10a2 In Complex With Gmp
Length = 331
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 141/319 (44%), Gaps = 56/319 (17%)
Query: 109 FMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDH 168
F+M+++ +Y + P+HN HA V +L + +FT LE L A HD+DH
Sbjct: 66 FIMSVKKNY-RRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDLERKGLLIACLCHDLDH 122
Query: 169 PGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 228
G +N +L LA +Y+ S +E HH + +LQ EG +I L+ + + + +++
Sbjct: 123 RGFSNSYLQKFDHPLAALYST-STMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEII 181
Query: 229 IDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLL 288
+++TD LA+ F N+KQ
Sbjct: 182 RKAIIATD-----LALYFG-------------NRKQ------------------------ 199
Query: 289 ADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEF 348
L+ M +T G L L+N + R +V+ ++ DL + TK P+ + + + EF
Sbjct: 200 --LEEMYQT------GSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEF 251
Query: 349 FQQGDKERELNLDISPMCDR-LSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDML 407
+ +GD+ ++L + PM DR + + Q+GF + + P + T ++ P + +L
Sbjct: 252 WAEGDEMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQIL-PPTEPLLKAC 310
Query: 408 EENRDWYQNYIVHPLWETW 426
+N ++ I TW
Sbjct: 311 RDNLSQWEKVIRGEETATW 329
>pdb|3UUO|A Chain A, The Discovery Of Potent, Selectivity, And Orally
Bioavailable Pyrozoloquinolines As Pde10 Inhibitors For
The Treatment Of Schizophrenia
pdb|3UUO|B Chain B, The Discovery Of Potent, Selectivity, And Orally
Bioavailable Pyrozoloquinolines As Pde10 Inhibitors For
The Treatment Of Schizophrenia
Length = 337
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 139/311 (44%), Gaps = 56/311 (18%)
Query: 109 FMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDH 168
F+M+++ +Y + P+HN HA V +L + +FT LE L A HD+DH
Sbjct: 78 FIMSVKKNY-RRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDLERKGLLIACLCHDLDH 134
Query: 169 PGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 228
G +N +L LA +Y+ S +E HH + +LQ EG +I L+ + + + +++
Sbjct: 135 RGFSNSYLQKFDHPLAALYST-STMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEII 193
Query: 229 IDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLL 288
+++TD LA+ F N+KQ
Sbjct: 194 RKAIIATD-----LALYFG-------------NRKQ------------------------ 211
Query: 289 ADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEF 348
L+ M +T G L L+N + R +V+ ++ DL + TK P+ + + + EF
Sbjct: 212 --LEEMYQT------GSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEF 263
Query: 349 FQQGDKERELNLDISPMCDR-LSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDML 407
+ +GD+ ++L + PM DR + + Q+GF + + P + T ++ P + +L
Sbjct: 264 WAEGDEMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQIL-PPTEPLLKAC 322
Query: 408 EENRDWYQNYI 418
+N ++ I
Sbjct: 323 RDNLSQWEKVI 333
>pdb|3UI7|A Chain A, Discovery Of Orally Active Pyrazoloquinoline As A Potent
Pde10 Inhibitor For The Management Of Schizophrenia
pdb|3UI7|B Chain B, Discovery Of Orally Active Pyrazoloquinoline As A Potent
Pde10 Inhibitor For The Management Of Schizophrenia
Length = 333
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 139/311 (44%), Gaps = 56/311 (18%)
Query: 109 FMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDH 168
F+M+++ +Y + P+HN HA V +L + +FT LE L A HD+DH
Sbjct: 74 FIMSVKKNY-RRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDLERKGLLIACLCHDLDH 130
Query: 169 PGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 228
G +N +L LA +Y+ S +E HH + +LQ EG +I L+ + + + +++
Sbjct: 131 RGFSNSYLQKFDHPLAALYST-STMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEII 189
Query: 229 IDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLL 288
+++TD LA+ F N+KQ
Sbjct: 190 RKAIIATD-----LALYFG-------------NRKQ------------------------ 207
Query: 289 ADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEF 348
L+ M +T G L L+N + R +V+ ++ DL + TK P+ + + + EF
Sbjct: 208 --LEEMYQT------GSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEF 259
Query: 349 FQQGDKERELNLDISPMCDR-LSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDML 407
+ +GD+ ++L + PM DR + + Q+GF + + P + T ++ P + +L
Sbjct: 260 WAEGDEMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQIL-PPTEPLLKAC 318
Query: 408 EENRDWYQNYI 418
+N ++ I
Sbjct: 319 RDNLSQWEKVI 329
>pdb|4HEU|A Chain A, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
((1-(3-(4-
((1h-Benzo[d]imidazol-2-Yl)amino)phenoxy)pyridin-2-
Yl)piperidin-4- Yl)methanol)
pdb|4HEU|B Chain B, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
((1-(3-(4-
((1h-Benzo[d]imidazol-2-Yl)amino)phenoxy)pyridin-2-
Yl)piperidin-4- Yl)methanol)
pdb|4HF4|A Chain A, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
(1-(1-(3-(4-
(Benzo[d]thiazol-2-Ylamino)phenoxy)pyrazin-2-
Yl)piperidin-4-Yl) Ethanol)
pdb|4HF4|B Chain B, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
(1-(1-(3-(4-
(Benzo[d]thiazol-2-Ylamino)phenoxy)pyrazin-2-
Yl)piperidin-4-Yl) Ethanol)
Length = 318
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 139/311 (44%), Gaps = 56/311 (18%)
Query: 109 FMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDH 168
F+M+++ +Y + P+HN HA V +L + +FT LE L A HD+DH
Sbjct: 60 FIMSVKKNY-RRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDLERKGLLIACLCHDLDH 116
Query: 169 PGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 228
G +N +L LA +Y+ S +E HH + +LQ EG +I L+ + + + +++
Sbjct: 117 RGFSNSYLQKFDHPLAALYST-STMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEII 175
Query: 229 IDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLL 288
+++TD LA+ F N+KQ
Sbjct: 176 RKAIIATD-----LALYFG-------------NRKQ------------------------ 193
Query: 289 ADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEF 348
L+ M +T G L L+N + R +V+ ++ DL + TK P+ + + + EF
Sbjct: 194 --LEEMYQT------GSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEF 245
Query: 349 FQQGDKERELNLDISPMCDR-LSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDML 407
+ +GD+ ++L + PM DR + + Q+GF + + P + T ++ P + +L
Sbjct: 246 WAEGDEMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQIL-PPTEPLLKAC 304
Query: 408 EENRDWYQNYI 418
+N ++ I
Sbjct: 305 RDNLSQWEKVI 315
>pdb|3LXG|A Chain A, Crystal Structure Of Rat Phosphodiesterase 10a In Complex
Wi Web-3
Length = 308
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 139/311 (44%), Gaps = 56/311 (18%)
Query: 109 FMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDH 168
F+M+++ +Y + P+HN HA V +L + +FT LE L A HD+DH
Sbjct: 49 FIMSVKKNY-RRVPYHNWKHAVTVAHCMYAILQNN--NGLFTDLERKGLLIACLCHDLDH 105
Query: 169 PGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 228
G +N +L LA +Y+ S +E HH + +LQ EG +I L+ + + + +++
Sbjct: 106 RGFSNSYLQKFDHPLAALYST-STMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEII 164
Query: 229 IDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLL 288
+++TD LA+ F N+KQ
Sbjct: 165 RKAIIATD-----LALYFG-------------NRKQ------------------------ 182
Query: 289 ADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEF 348
L+ M +T G L L N + R +V+ ++ DL + TK P+ + + + EF
Sbjct: 183 --LEEMYQT------GSLNLHNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEF 234
Query: 349 FQQGDKERELNLDISPMCDR-LSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDML 407
+ +GD+ ++L + PM DR + + Q+GF + + P + T ++ P + +L
Sbjct: 235 WAEGDEMKKLGIQPIPMMDRDKRDEVPQGQLGFYNAVAIPCYTTLTQIL-PPTEPLLKAC 293
Query: 408 EENRDWYQNYI 418
+N + ++ I
Sbjct: 294 RDNLNQWEKVI 304
>pdb|2OUV|A Chain A, Crystal Structure Of Pde10a2 Mutant Of D564n
pdb|2OUV|B Chain B, Crystal Structure Of Pde10a2 Mutant Of D564n
pdb|2OUY|A Chain A, Crystal Structure Of Pde10a2 Mutant D564a In Complex With
Camp.
pdb|2OUY|B Chain B, Crystal Structure Of Pde10a2 Mutant D564a In Complex With
Camp
Length = 331
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 141/319 (44%), Gaps = 56/319 (17%)
Query: 109 FMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDH 168
F+M+++ +Y + P+HN HA V +L + +FT LE L A H++DH
Sbjct: 66 FIMSVKKNY-RRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDLERKGLLIACLCHNLDH 122
Query: 169 PGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 228
G +N +L LA +Y+ S +E HH + +LQ EG +I L+ + + + +++
Sbjct: 123 RGFSNSYLQKFDHPLAALYST-STMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEII 181
Query: 229 IDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLL 288
+++TD LA+ F N+KQ
Sbjct: 182 RKAIIATD-----LALYFG-------------NRKQ------------------------ 199
Query: 289 ADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEF 348
L+ M +T G L L+N + R +V+ ++ DL + TK P+ + + + EF
Sbjct: 200 --LEEMYQT------GSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEF 251
Query: 349 FQQGDKERELNLDISPMCDR-LSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDML 407
+ +GD+ ++L + PM DR + + Q+GF + + P + T ++ P + +L
Sbjct: 252 WAEGDEMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQIL-PPTEPLLKAC 310
Query: 408 EENRDWYQNYIVHPLWETW 426
+N ++ I TW
Sbjct: 311 RDNLSQWEKVIRGEETATW 329
>pdb|2OUR|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Camp
pdb|2OUR|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Camp
pdb|2OUS|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a
pdb|2OUS|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a
pdb|2OUU|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Cgmp
pdb|2OUU|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Cgmp
Length = 331
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 140/319 (43%), Gaps = 56/319 (17%)
Query: 109 FMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDH 168
F+M+++ +Y + P+HN HA V +L + +FT LE L A HD+DH
Sbjct: 66 FIMSVKKNY-RRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDLERKGLLIACLCHDLDH 122
Query: 169 PGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 228
G +N +L LA +Y+ S +E HH + +LQ EG +I L+ + + + +++
Sbjct: 123 RGFSNSYLQKFDHPLAALYST-STMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEII 181
Query: 229 IDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLL 288
+++TD LA+ F N+KQ
Sbjct: 182 RKAIIATD-----LALYFG-------------NRKQ------------------------ 199
Query: 289 ADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEF 348
L+ M +T G L L+N + R +V+ ++ L + TK P+ + + + EF
Sbjct: 200 --LEEMYQT------GSLNLNNQSHRDRVIGLMMTACALCSVTKLWPVTKLTANDIYAEF 251
Query: 349 FQQGDKERELNLDISPMCDR-LSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDML 407
+ +GD+ ++L + PM DR + + Q+GF + + P + T ++ P + +L
Sbjct: 252 WAEGDEMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQIL-PPTEPLLKAC 310
Query: 408 EENRDWYQNYIVHPLWETW 426
+N ++ I TW
Sbjct: 311 RDNLSQWEKVIRGEETATW 329
>pdb|1N9E|A Chain A, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|B Chain B, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|C Chain C, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|D Chain D, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
Length = 787
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 19/79 (24%)
Query: 384 IVHPLWETWADLVHPDAQEILDMLEENR--------DWYQNYIVHPLWETWADLVHPDAQ 435
I P W L + QE+LD+L D++ NY++ W + + P+
Sbjct: 53 IEAPKTNIWTSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVL------WIETLKPNKT 106
Query: 436 EILDMLEENRDWYQSMIPP 454
E L L+E+ D +PP
Sbjct: 107 EALTYLDEDGD-----LPP 120
>pdb|1RKY|A Chain A, Pplo + Xe
pdb|1W7C|A Chain A, Pplo At 1.23 Angstroms
Length = 747
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 19/79 (24%)
Query: 384 IVHPLWETWADLVHPDAQEILDMLEENR--------DWYQNYIVHPLWETWADLVHPDAQ 435
I P W L + QE+LD+L D++ NY++ W + + P+
Sbjct: 13 IEAPKTNIWTSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVL------WIETLKPNKT 66
Query: 436 EILDMLEENRDWYQSMIPP 454
E L L+E+ D +PP
Sbjct: 67 EALTYLDEDGD-----LPP 80
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 163 IHDVDHPGLTNQFLINSSSELALMYNDESVLENHHL--------AVAFKLLQNEGCDI 212
IHD+ + GL++ F L ++YN+ N+ + A+ F+LL+ G +I
Sbjct: 61 IHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNI 118
>pdb|1YKW|A Chain A, Crystal Structure Of A Novel Rubisco-Like Protein From The
Green Sulfur Bacterium Chlorobium Tepidum
pdb|1YKW|B Chain B, Crystal Structure Of A Novel Rubisco-Like Protein From The
Green Sulfur Bacterium Chlorobium Tepidum
Length = 435
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 292 KTMVETKKVAGSGVLLLDNYTDRI-----QVLENLVHCADLSNPTKP-LPL 336
K M + +++AG +++ + DR+ +VLEN++ C KP LP+
Sbjct: 305 KVMTKLQRLAGLDAVIMPGFGDRVMTPEEEVLENVIECTKPMGRIKPCLPV 355
>pdb|1CBK|A Chain A, 7,8-Dihydro-6-Hydroxymethylpterin-Pyrophosphokinase From
Haemophilus Influenzae
pdb|1CBK|B Chain B, 7,8-Dihydro-6-Hydroxymethylpterin-Pyrophosphokinase From
Haemophilus Influenzae
Length = 160
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 355 ERELNLDI----SPMCDRLSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDMLEEN 410
ER L+LDI + + TI + ++++ PL+E +DLV P++Q I +++++
Sbjct: 91 ERTLDLDILLYGNEIIQNERLTIPHYDMHNREFVIVPLFEIASDLVLPNSQIITELVKQF 150
Query: 411 RD 412
D
Sbjct: 151 AD 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,223,129
Number of Sequences: 62578
Number of extensions: 600106
Number of successful extensions: 1672
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1382
Number of HSP's gapped (non-prelim): 227
length of query: 484
length of database: 14,973,337
effective HSP length: 103
effective length of query: 381
effective length of database: 8,527,803
effective search space: 3249092943
effective search space used: 3249092943
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)