Query psy7867
Match_columns 484
No_of_seqs 252 out of 867
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 20:51:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7867.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7867hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3689|consensus 100.0 1.1E-90 2.4E-95 752.6 25.8 318 54-455 321-678 (707)
2 PF00233 PDEase_I: 3'5'-cyclic 100.0 1.2E-74 2.7E-79 567.7 25.0 236 123-411 1-237 (237)
3 KOG3688|consensus 100.0 4.2E-73 9E-78 577.7 15.2 313 89-456 183-524 (554)
4 KOG1229|consensus 100.0 7.2E-60 1.6E-64 481.2 17.3 282 90-417 470-761 (775)
5 cd00077 HDc Metal dependent ph 98.1 8.3E-07 1.8E-11 76.1 1.5 70 123-207 1-70 (145)
6 smart00471 HDc Metal dependent 96.3 0.0079 1.7E-07 50.3 5.5 69 121-207 1-69 (124)
7 PF00233 PDEase_I: 3'5'-cyclic 95.4 0.071 1.5E-06 52.8 8.7 21 220-240 98-118 (237)
8 KOG3689|consensus 92.8 0.2 4.3E-06 56.8 6.3 47 179-240 501-547 (707)
9 PF01966 HD: HD domain; Inter 92.6 0.076 1.7E-06 44.8 2.2 48 126-178 2-49 (122)
10 KOG3688|consensus 91.9 0.22 4.8E-06 53.2 4.9 21 220-240 315-335 (554)
11 PRK10119 putative hydrolase; P 90.9 0.3 6.4E-06 48.5 4.5 54 108-168 9-62 (231)
12 COG0232 Dgt dGTP triphosphohyd 89.3 0.6 1.3E-05 50.0 5.4 72 126-207 70-143 (412)
13 KOG1229|consensus 86.0 0.57 1.2E-05 50.3 2.9 58 178-253 573-630 (775)
14 COG1078 HD superfamily phospho 85.9 0.89 1.9E-05 49.0 4.4 78 120-207 42-126 (421)
15 TIGR00277 HDIG uncharacterized 85.8 1.6 3.5E-05 34.3 4.8 58 126-207 6-63 (80)
16 PRK01286 deoxyguanosinetriphos 84.1 1.2 2.5E-05 46.8 4.1 69 126-207 64-132 (336)
17 PRK01759 glnD PII uridylyl-tra 82.6 22 0.00048 41.9 14.2 40 320-361 560-599 (854)
18 TIGR01353 dGTP_triPase deoxygu 82.4 0.92 2E-05 48.3 2.7 81 122-207 35-120 (381)
19 TIGR03760 ICE_TraI_Pfluor inte 79.4 4.5 9.8E-05 39.9 6.1 72 98-169 28-120 (218)
20 KOG2681|consensus 79.2 4.5 9.7E-05 43.6 6.3 59 120-178 68-131 (498)
21 PRK05318 deoxyguanosinetriphos 77.4 3 6.5E-05 45.2 4.6 77 123-207 56-139 (432)
22 PRK00275 glnD PII uridylyl-tra 76.4 23 0.00049 42.0 11.8 40 320-361 584-623 (895)
23 PRK03007 deoxyguanosinetriphos 75.4 2 4.4E-05 46.4 2.7 72 123-207 68-140 (428)
24 PRK05092 PII uridylyl-transfer 75.1 25 0.00055 41.7 11.8 40 320-361 617-656 (931)
25 PRK05007 PII uridylyl-transfer 74.7 20 0.00044 42.3 10.8 40 320-361 585-624 (884)
26 PRK00227 glnD PII uridylyl-tra 73.7 51 0.0011 38.0 13.3 44 321-366 491-534 (693)
27 PRK01096 deoxyguanosinetriphos 72.2 3.5 7.5E-05 44.8 3.5 54 122-175 58-120 (440)
28 PRK04926 dgt deoxyguanosinetri 70.0 3.8 8.3E-05 45.2 3.2 53 120-172 60-125 (503)
29 TIGR01693 UTase_glnD [Protein- 69.9 42 0.00091 39.4 11.9 40 320-361 552-591 (850)
30 PRK03059 PII uridylyl-transfer 68.8 34 0.00074 40.4 10.8 33 320-354 564-596 (856)
31 TIGR00295 conserved hypothetic 67.7 7.8 0.00017 36.2 4.4 72 113-209 4-75 (164)
32 PRK03381 PII uridylyl-transfer 67.3 70 0.0015 37.3 12.9 38 320-359 530-567 (774)
33 PRK04374 PII uridylyl-transfer 64.9 91 0.002 37.0 13.3 40 320-361 573-612 (869)
34 COG1418 Predicted HD superfami 63.7 5.4 0.00012 39.4 2.6 58 124-188 36-95 (222)
35 TIGR03401 cyanamide_fam HD dom 60.6 8.9 0.00019 38.0 3.5 63 98-168 32-96 (228)
36 PRK12704 phosphodiesterase; Pr 54.7 24 0.00053 39.2 6.0 76 105-209 318-394 (520)
37 COG3294 HD supefamily hydrolas 52.2 92 0.002 31.3 8.8 109 105-237 42-160 (269)
38 PRK10885 cca multifunctional t 51.8 21 0.00046 38.4 4.9 16 156-171 247-262 (409)
39 PRK12703 tRNA 2'-O-methylase; 51.8 21 0.00045 37.7 4.6 60 122-209 185-244 (339)
40 PF04844 Ovate: Transcriptiona 51.8 56 0.0012 25.9 5.9 18 221-238 5-22 (59)
41 TIGR03319 YmdA_YtgF conserved 49.8 37 0.00079 37.8 6.4 76 105-209 312-388 (514)
42 COG2206 c-di-GMP phosphodieste 49.7 20 0.00044 37.4 4.2 57 120-180 144-200 (344)
43 TIGR00488 putative HD superfam 49.6 30 0.00064 31.9 4.9 72 124-207 8-84 (158)
44 TIGR03276 Phn-HD phosphonate d 49.2 8.1 0.00017 37.1 1.1 14 156-169 45-58 (179)
45 COG4341 Predicted HD phosphohy 48.9 14 0.0003 35.1 2.5 78 108-208 15-92 (186)
46 PF07514 TraI_2: Putative heli 48.7 18 0.0004 37.7 3.7 73 97-169 26-119 (327)
47 PRK00106 hypothetical protein; 41.4 31 0.00066 38.6 4.2 80 100-208 329-408 (535)
48 PRK12705 hypothetical protein; 39.7 64 0.0014 35.9 6.3 77 104-209 305-382 (508)
49 TIGR01596 cas3_HD CRISPR-assoc 35.9 27 0.00058 31.9 2.3 43 127-169 3-46 (177)
50 PF12210 Hrs_helical: Hepatocy 33.8 1.1E+02 0.0024 26.6 5.4 36 381-417 30-65 (96)
51 PRK11031 guanosine pentaphosph 32.3 69 0.0015 35.3 5.1 61 104-169 307-367 (496)
52 PRK13298 tRNA CCA-pyrophosphor 29.8 49 0.0011 35.8 3.4 16 156-171 248-263 (417)
53 TIGR01568 A_thal_3678 uncharac 28.4 1.9E+02 0.0042 23.4 5.7 16 221-236 11-26 (66)
54 PRK10854 exopolyphosphatase; P 23.4 1.3E+02 0.0029 33.2 5.4 61 103-168 312-374 (513)
55 COG3910 Predicted ATPase [Gene 22.3 38 0.00082 33.3 0.8 86 102-194 102-200 (233)
No 1
>KOG3689|consensus
Probab=100.00 E-value=1.1e-90 Score=752.59 Aligned_cols=318 Identities=51% Similarity=0.809 Sum_probs=296.5
Q ss_pred CCccccCCCccccccCCCCCCCCCccccccchHHhh----------------------------------------hhhh
Q psy7867 54 PMSHISGVKRPLTHTNSFTGEKLPKHGVETASEEEL----------------------------------------GNNR 93 (484)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----------------------------------------~~~~ 93 (484)
.|+.++|+..-.+|+.+-...+.|+++|.++-+.+. ++++
T Consensus 321 ~~~~~~gl~i~~~~~y~~~~~s~~r~~v~~e~l~~h~~~~~~e~~~~~~~~~~l~d~~f~d~~~~~~~l~~~~~~mf~~l 400 (707)
T KOG3689|consen 321 AFTIFCGLSIHNTHMYSKINKSEPRQGVALEFLSYHAKALEEEVQWGPATILKLLDFFFSDRLLSENELTKCTFRMFQDL 400 (707)
T ss_pred HHHHHHhhhhhhhhhHHHHhhhccccchhHHHHHHHHhhhHHhhcccchhhhccccceeccccCCCchHHHHHHHHHHHc
Confidence 477788887755666555677778887777665443 3399
Q ss_pred hhhhhcCCCHHHHHHHHHHHHHhcCCCCCCCCcchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCCCCCch
Q psy7867 94 DLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTN 173 (484)
Q Consensus 94 ~L~~~f~I~~~~L~~Fl~~v~~~Y~~~npYHN~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdHPG~nN 173 (484)
|++++|+|+.++|++||.+|+++||++||||||+||+||+|+||++|..+.+..+||++|+||+++||+||||||||+||
T Consensus 401 ~lv~~f~I~~~tL~r~lltV~k~Yr~~v~YHNw~HAf~VaQ~m~~lL~t~~L~~~fTdlEiLalliAalcHDlDHrGtNN 480 (707)
T KOG3689|consen 401 GLVKKFKIDVETLCRFLLTVEKNYRSNVPYHNWRHAFDVAQAMFALLKTPKLQNKFTDLEILALLIAALCHDLDHRGTNN 480 (707)
T ss_pred CcceeeccCHHHHHHHHhhhhhccccCCcchhHHHHHHHHHHHHHHHhchhHHhhcChHHHHHHHHHHHHccCCCCCCCc
Confidence 99999999999999999999999966999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcChhhhhcCCCchhhhhhHHHHHHHHhhhcchhcccCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHhhccc
Q psy7867 174 QFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEG 253 (484)
Q Consensus 174 ~Fli~t~s~LA~lYnD~SVLEnhH~a~af~LL~~~~~nif~~l~~~~~~~~Rk~VI~mILATDMa~~~~~~~f~~l~~~~ 253 (484)
.|++|++||||.+|||.|||||||++++++||++++||||+||
T Consensus 481 ~f~iks~s~LA~lY~~~SvLE~HH~~~~~~lLqe~~~nIfsnL------------------------------------- 523 (707)
T KOG3689|consen 481 SYLIKSNSPLAQLYNDSSVLENHHFAQAFKLLQEEGCNIFSNL------------------------------------- 523 (707)
T ss_pred HHHHhcCCHHHHHhCCccHHHHHHHHHHHHHHhccccchhhcC-------------------------------------
Confidence 9999999999999999999999999999999999999999999
Q ss_pred cccccccCHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHhhhccCCCcccCCChhHHHHHHHHHHhhcCCCCCCCC
Q psy7867 254 CDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKP 333 (484)
Q Consensus 254 ~~il~~~~~~~~~~~r~~ii~~ILATDms~H~~~l~~lk~~~e~~k~~~~g~~~~d~~~dR~~ll~~ll~~ADISn~~rp 333 (484)
++++++.++++|+++||||||++||+++++|+++++++ |.+++++++||.++++++||||||||||||
T Consensus 524 -------s~~~~~~~~~~i~~~ILATDla~h~~~~~~lk~~v~~~-----~~~~~~~~~hr~lvl~mmmtacDLSn~TKp 591 (707)
T KOG3689|consen 524 -------SKKQYQQIRKLIIDAILATDLALHFKKRADLKEMVETK-----GVYDLENYSHRILVLAMMMTACDLSNPTKP 591 (707)
T ss_pred -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CcccccchhHHHHHHHHHHHHhhccCCcCC
Confidence 67888899999999999999999999999999999875 678899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcchHHHhcCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q psy7867 334 LPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDMLEENRDW 413 (484)
Q Consensus 334 ~~v~~kWs~~l~eEFf~QGD~Er~lgl~iSp~~DR~~~~~~ksQigFid~iv~PLf~~la~l~~p~~~~ll~~l~~Nr~~ 413 (484)
|+++++|+++|++|||+|||+|+++|++|+|||||++.++|++|||||+|||+|+|++|++++ |+.
T Consensus 592 wei~~qwa~~I~~EFf~QGDeek~lg~~p~pmmDR~k~~vp~~QvgFid~I~~Plyet~a~l~-~~~------------- 657 (707)
T KOG3689|consen 592 WEIQKQWAELIAEEFFDQGDEEKELGLEPSPMMDRDKASVPKLQVGFIDYICIPLYETWADLV-PDA------------- 657 (707)
T ss_pred ccHHHHHHHHHHHHHHhcchHHHHcCCCCCcccccCcccCchhhhhHHHHHHHHHHHHHHHhc-cch-------------
Confidence 999999999999999999999999999999999999999999999999999999999999987 766
Q ss_pred HHHhhcCCchhhhhhccCCCHHHHHHHHHHhHHHHhhcCCCC
Q psy7867 414 YQNYIVHPLWETWADLVHPDAQEILDMLEENRDWYQSMIPPS 455 (484)
Q Consensus 414 w~~~i~~~~~e~w~d~~~~~~~~~l~~l~~n~~~~~~~~~~~ 455 (484)
+.||+.|++||+||+++++++
T Consensus 658 ---------------------~pmld~l~~Nr~~w~~l~~~~ 678 (707)
T KOG3689|consen 658 ---------------------QPMLDGLEDNREWWQSLIPES 678 (707)
T ss_pred ---------------------hhHHHHHHHhHHHHHHhhhhh
Confidence 888999999999999999866
No 2
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This entry represents the catalytic domain of PDE which is multihelical and can be divided into three subdomains.; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0007165 signal transduction; PDB: 3I8V_A 3TVX_A 2QYK_A 1ZKL_A 3G3N_A 4DFF_B 2OUS_B 3SNL_A 2OUY_A 2OUP_B ....
Probab=100.00 E-value=1.2e-74 Score=567.69 Aligned_cols=236 Identities=51% Similarity=0.856 Sum_probs=220.1
Q ss_pred CCCcchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCCCCCchHHHHhhcChhhhhcCCCchhhhhhHHHHH
Q psy7867 123 FHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAF 202 (484)
Q Consensus 123 YHN~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdHPG~nN~Fli~t~s~LA~lYnD~SVLEnhH~a~af 202 (484)
||||+||+||+|++|+++..+++...|+++|++|++|||+||||||||+||.|++++++|||++|||.|||||||++.+|
T Consensus 1 yHN~~Ha~dV~q~~~~ll~~~~~~~~l~~~e~~alliAal~HDv~HpG~~N~flv~~~~~LA~~Y~d~SvLE~~H~~~~~ 80 (237)
T PF00233_consen 1 YHNFRHAADVLQFVYYLLSNGGLREYLSPLEIFALLIAALCHDVDHPGVNNAFLVKTNSPLAILYNDRSVLENHHCALAF 80 (237)
T ss_dssp SSSHHHHHHHHHHHHHHHHHGGGGTTS-HHHHHHHHHHHHHTTTT-SSSCHHHHHHTTSHHHHHTTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHccCccccCCHHHHHHHHHHHHHhcCCCCccccchhhccccchhhhcCccCCccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcchhcccCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHhhccccccccccCHHHHHHHHHHHHHHHhccchh
Q psy7867 203 KLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMS 282 (484)
Q Consensus 203 ~LL~~~~~nif~~l~~~~~~~~Rk~VI~mILATDMa~~~~~~~f~~l~~~~~~il~~~~~~~~~~~r~~ii~~ILATDms 282 (484)
+||++++||||.++ ++++++.+|++|+++||||||+
T Consensus 81 ~lL~~~~~nil~~l--------------------------------------------~~~~~~~~r~~ii~~ILaTDm~ 116 (237)
T PF00233_consen 81 QLLRKEECNILSNL--------------------------------------------SEDDYQEFRKLIIELILATDMS 116 (237)
T ss_dssp HHHTSTTTTTTTTS---------------------------------------------HHHHHHHHHHHHHHHHTTSGG
T ss_pred HHHHhhhhhhhcch--------------------------------------------hhhhhHHHHHHHHHHHHhcchh
Confidence 99999999999999 6777889999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhccCCCcccCCChhHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHHHHhcchHHHhcCCCC
Q psy7867 283 KHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDI 362 (484)
Q Consensus 283 ~H~~~l~~lk~~~e~~k~~~~g~~~~d~~~dR~~ll~~ll~~ADISn~~rp~~v~~kWs~~l~eEFf~QGD~Er~lgl~i 362 (484)
+|+++++++++.+..... . +.++|..+++++|||||||||+|||+++++|+.++++|||.|||+|+++|+|+
T Consensus 117 ~h~~~~~~~~~~~~~~~~-------~-~~~~r~~~l~~ll~~ADisn~~rp~~~~~kW~~~l~~Ef~~Qgd~E~~~gl~~ 188 (237)
T PF00233_consen 117 KHFELLSKLQEKLDSGDF-------L-DEDDRQLLLQLLLKAADISNPARPWDVAKKWAERLMEEFFRQGDLEKELGLPV 188 (237)
T ss_dssp GHHHHHHHHHHHHHTTEB-------T-TTCHHHHHHHHHHHHHHTGGGGS-HHHHHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred hHHHHHHHHHHHhhhhcc-------c-chHHHHHHHHhcccccccccccCcHHHHHHHHHHHHHHHhhhhhHHHHcCCCc
Confidence 999999999998765321 1 22399999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHH
Q psy7867 363 SPMCDRLSATIEKSQVGFIDYIVHPLWETWADLVHPD-AQEILDMLEENR 411 (484)
Q Consensus 363 Sp~~DR~~~~~~ksQigFid~iv~PLf~~la~l~~p~-~~~ll~~l~~Nr 411 (484)
||+|||.+.++|++|+|||++||.|+|++|++++ |. +++++++|++||
T Consensus 189 s~~~dr~~~~~~~~Qi~Fi~~iv~Plf~~l~~~~-p~~~~~~~~~l~~Nr 237 (237)
T PF00233_consen 189 SPLMDRDKTNLAKSQIGFIDFIVKPLFEALAKLF-PEDLQPLLDQLEENR 237 (237)
T ss_dssp CTTGSTTTGGHHHHHHHHHHHTHHHHHHHHHHHS-TTTGHHHHHHHHHHH
T ss_pred ccccCccccCcccCCCchhHHHHHHHHHHHHHHC-HHHHHHHHHHHHcCC
Confidence 9999999889999999999999999999999986 65 999999999987
No 3
>KOG3688|consensus
Probab=100.00 E-value=4.2e-73 Score=577.75 Aligned_cols=313 Identities=39% Similarity=0.616 Sum_probs=268.6
Q ss_pred hhhhhhhhhhcCCCHHHHHHHHHHHHHhcC-CCCCCCCcchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCC
Q psy7867 89 LGNNRDLLKTFLIPAKTFINFMMTLEDHYV-KDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVD 167 (484)
Q Consensus 89 l~~~~~L~~~f~I~~~~L~~Fl~~v~~~Y~-~~npYHN~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvd 167 (484)
|+..+|++.+|+|+...|..|+..++.+|. ..|||||..||+||+|.+|+++..+++.+.|+.+|+||+++||++||++
T Consensus 183 l~~ry~~I~rfkip~~~l~~f~~ale~gy~k~knPyhn~~haadVtqt~H~~l~~Tgim~~Lt~LEllA~~faAaiHDYe 262 (554)
T KOG3688|consen 183 LFTRYNLIHRFKIPHGCLELFAHALEVGYSKYKNPYHNLIHAADVTQTVHYHLLHTGIMNWLTELELLALLFAAAIHDYE 262 (554)
T ss_pred hhhhhcchhhhcccHHHHHHHHHHHHhcccCCCCCccchhhhhhcccCchHHhhhhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 456999999999999999999999999996 4799999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHhhcChhhhhcCCCchhhhhhHHHHHHHHhhhcchhcccCCHHHHHHHHHHHHHHHhhccchhhHHHHHHH
Q psy7867 168 HPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFK 247 (484)
Q Consensus 168 HPG~nN~Fli~t~s~LA~lYnD~SVLEnhH~a~af~LL~~~~~nif~~l~~~~~~~~Rk~VI~mILATDMa~~~~~~~f~ 247 (484)
|+|+||+|+|.++|.-|++|||+|||||||++.+|+||++++.||+.||
T Consensus 263 HtGtTNnFhiQt~s~~AiLYNDRSVLENHH~sas~rLl~edE~nil~nL------------------------------- 311 (554)
T KOG3688|consen 263 HTGTTNNFHIQTRSDKAILYNDRSVLENHHASASFRLLQEDEMNILINL------------------------------- 311 (554)
T ss_pred CCCcccceEEEecCceeEEeccHHHHhhhhHHHHHHHhcchhhhHHhcC-------------------------------
Confidence 9999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccccccCHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHhhhccCCCcccCCChhHHHHHHHHHHhhcCC
Q psy7867 248 LLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADL 327 (484)
Q Consensus 248 ~l~~~~~~il~~~~~~~~~~~r~~ii~~ILATDms~H~~~l~~lk~~~e~~k~~~~g~~~~d~~~dR~~ll~~ll~~ADI 327 (484)
+++++++||.++|+|||||||+.||..+..+++++...+ ..||..++++++|||||
T Consensus 312 -------------s~de~relR~LViEmVLaTDms~HFqqiktmk~~L~~~e-----------~iDk~k~lsLllh~aDI 367 (554)
T KOG3688|consen 312 -------------SKDEWRELRNLVIEMVLATDMSQHFQQIKTMKERLQQPE-----------GIDKLKALSLLLHAADI 367 (554)
T ss_pred -------------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhChh-----------hhhhHHHHHHHHHHhcc
Confidence 788899999999999999999999999999988875432 26899999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhcchHHHhcCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCChHHHHH--
Q psy7867 328 SNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILD-- 405 (484)
Q Consensus 328 Sn~~rp~~v~~kWs~~l~eEFf~QGD~Er~lgl~iSp~~DR~~~~~~ksQigFid~iv~PLf~~la~l~~p~~~~ll~-- 405 (484)
|+|+|||.++.+|+.+|+||||+|||+|+++|||+||+|||.++.++++|+|||+|||.|+|..+.+..--.+.++++
T Consensus 368 shPaK~w~lH~rWT~~llEEFfrQGD~EaelGLPfSPlcDR~st~VAqsQigFIdfIVePt~tv~~d~~ek~v~Pl~d~~ 447 (554)
T KOG3688|consen 368 SHPAKPWGLHHRWTMALLEEFFRQGDKEAELGLPFSPLCDRKSTMVAQSQIGFIDFIVEPTFTVLTDMTEKIVLPLIDEP 447 (554)
T ss_pred CCCcccccHHHHHHHHHHHHHHHccchHhhcCCCCCcccCCcchhhhhhhccceeeeecchHHHHHHHHHhhccccCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999998743212222222
Q ss_pred HHHHHHHHHHHhhcCCc----hhhhh-------hcc-----------CCC----HHHHHHHHHHhHHHHhhcCCCCC
Q psy7867 406 MLEENRDWYQNYIVHPL----WETWA-------DLV-----------HPD----AQEILDMLEENRDWYQSMIPPSP 456 (484)
Q Consensus 406 ~l~~Nr~~w~~~i~~~~----~e~w~-------d~~-----------~~~----~~~~l~~l~~n~~~~~~~~~~~~ 456 (484)
.-..|-..|.+.+.... -..|+ ... +++ -...+..+.+|++.|++......
T Consensus 448 ~~~~~~~~~~~s~~~~~g~~~s~~i~~s~~~k~ss~~ps~~~~~~l~s~~~~~~~~~wlk~~~eNk~~wke~a~k~~ 524 (554)
T KOG3688|consen 448 SKEHNHPKWASSITLISGGSPSDAIRPSGGSKTSSSSPSARRDVPLDSVDKKSFRVPWLKIIQENKEKWKERAAKEE 524 (554)
T ss_pred ccccCCccccccccccccCChhhhcccCCCccccCCCCCcCcCCCCCcchhhccchHHHHHHHHHHHHHHhhhcccc
Confidence 33344444544332211 01111 000 111 12567889999999998876554
No 4
>KOG1229|consensus
Probab=100.00 E-value=7.2e-60 Score=481.24 Aligned_cols=282 Identities=34% Similarity=0.608 Sum_probs=250.5
Q ss_pred hhhhhhhhhcCCCHHHHHHHHHHHHHhcCCCCCCCCcchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCCC
Q psy7867 90 GNNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHP 169 (484)
Q Consensus 90 ~~~~~L~~~f~I~~~~L~~Fl~~v~~~Y~~~npYHN~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdHP 169 (484)
+.++|+++-++.+...|.+|+..|+.+||..|.|||.+||+||+|++.+||..+.+..+++.++..|.|+||.+||+|||
T Consensus 470 FeRfgVCdfL~CSd~~L~aWf~~IEA~YHa~NaYHNaTHAADVLhATaFFL~kerV~g~ldeld~VAALiAAaVHDlDHP 549 (775)
T KOG1229|consen 470 FERFGVCDFLGCSDDLLHAWFLSIEAHYHAGNAYHNATHAADVLHATAFFLDKERVAGHLDELDAVAALIAAAVHDLDHP 549 (775)
T ss_pred HHHhcccccccCcHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHhcCCchhhcccchHHHHHHHHHHHHhccCCC
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHhhcChhhhhcCCCchhhhhhHHHHHHH-Hhh-hcchhcccCCHHHHHHHHHHHHHHHhhccchhhHHHHHHH
Q psy7867 170 GLTNQFLINSSSELALMYNDESVLENHHLAVAFKL-LQN-EGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFK 247 (484)
Q Consensus 170 G~nN~Fli~t~s~LA~lYnD~SVLEnhH~a~af~L-L~~-~~~nif~~l~~~~~~~~Rk~VI~mILATDMa~~~~~~~f~ 247 (484)
|.+|+||+|+++.||++|||.+||||||.|++|+| |+. .+||||.++
T Consensus 550 GR~NafLcNagqeLAiLYNDnaiLEnHH~ALAFQLTlkdn~ncNIFkni------------------------------- 598 (775)
T KOG1229|consen 550 GRGNAFLCNAGQELAILYNDNAILENHHIALAFQLTLKDNANCNIFKNI------------------------------- 598 (775)
T ss_pred CCCceeEecCCcceeEEeccchHhhhhhhhheeeeeeccCcccchhhcc-------------------------------
Confidence 99999999999999999999999999999999998 554 469999999
Q ss_pred HhhccccccccccCHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHhh---hccCCCccc----CCChhHHHHHHHH
Q psy7867 248 LLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETK---KVAGSGVLL----LDNYTDRIQVLEN 320 (484)
Q Consensus 248 ~l~~~~~~il~~~~~~~~~~~r~~ii~~ILATDms~H~~~l~~lk~~~e~~---k~~~~g~~~----~d~~~dR~~ll~~ 320 (484)
+.+++.++|..||+|||||||++||+.+++|...+... +..++..-. ..-.+..++++.|
T Consensus 599 -------------dRe~f~qlR~AiidMVLATdiskHFEhl~KF~ksinkpmaaeiegsDcecepagknf~eNqilI~~M 665 (775)
T KOG1229|consen 599 -------------DREEFIQLRHAIIDMVLATDISKHFEHLAKFNKSINKPMAAEIEGSDCECEPAGKNFDENQILICDM 665 (775)
T ss_pred -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeecccCccccccCCCCccceeHHHH
Confidence 67788888999999999999999999999998743211 011111100 0113567889999
Q ss_pred HHhhcCCCCCCCChhHHHHHHHHHHHHHHhcchHHHhcCCCC-CCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCC
Q psy7867 321 LVHCADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDI-SPMCDRLSATIEKSQVGFIDYIVHPLWETWADLVHPD 399 (484)
Q Consensus 321 ll~~ADISn~~rp~~v~~kWs~~l~eEFf~QGD~Er~lgl~i-Sp~~DR~~~~~~ksQigFid~iv~PLf~~la~l~~p~ 399 (484)
|+|||||+||+|||++|.+|+.||.||||.|.|.||+.|||| .|.+||.+.++|++|+||||+++.-.|.+|..+ ..
T Consensus 666 liKCADiaNP~R~ldLCieWAgRIsEEYFaQTdEEK~kGLPV~M~VFDRNTCniP~sQ~~FID~F~~d~F~a~daF--Ah 743 (775)
T KOG1229|consen 666 LIKCADIANPARELDLCIEWAGRISEEYFAQTDEEKEKGLPVTMEVFDRNTCNIPISQCGFIDMFARDAFAAFDAF--AH 743 (775)
T ss_pred HHHHhccCCccchhhHHHHHHhHHHHHHHHhhhHHHhcCCceeeeeecCCccCCchhhhhHHHHHHHHHHHHHHHH--Hh
Confidence 999999999999999999999999999999999999999999 489999999999999999999999999999875 56
Q ss_pred hHHHHHHHHHHHHHHHHh
Q psy7867 400 AQEILDMLEENRDWYQNY 417 (484)
Q Consensus 400 ~~~ll~~l~~Nr~~w~~~ 417 (484)
+-.+.+.|..|.++|..+
T Consensus 744 L~aLmdhLadNYehWKtl 761 (775)
T KOG1229|consen 744 LGALMDHLADNYEHWKTL 761 (775)
T ss_pred hHHHHHHHHHhhhhheec
Confidence 777888888888887654
No 5
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=98.13 E-value=8.3e-07 Score=76.08 Aligned_cols=70 Identities=29% Similarity=0.393 Sum_probs=59.0
Q ss_pred CCCcchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCCCCCchHHHHhhcChhhhhcCCCchhhhhhHHHHH
Q psy7867 123 FHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAF 202 (484)
Q Consensus 123 YHN~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdHPG~nN~Fli~t~s~LA~lYnD~SVLEnhH~a~af 202 (484)
+|++.|+..|++.+..+...... +..+...+++||++||+|+++..+.| |......+..|...+.
T Consensus 1 ~~~~~Hs~~v~~~~~~~~~~~~~----~~~~~~~l~~aaLlHDig~~~~~~~~-----------~~~~~~~~~~h~~~g~ 65 (145)
T cd00077 1 EHRFEHSLRVAQLARRLAEELGL----SEEDIELLRLAALLHDIGKPGTPDAI-----------TEEESELEKDHAIVGA 65 (145)
T ss_pred CchHHHHHHHHHHHHHHHHHhCc----CHHHHHHHHHHHHHHhcCCccCcccc-----------CHHHHHHHHhhHHHHH
Confidence 57899999999999888765432 67888899999999999999999887 5455778889999999
Q ss_pred HHHhh
Q psy7867 203 KLLQN 207 (484)
Q Consensus 203 ~LL~~ 207 (484)
.+++.
T Consensus 66 ~~~~~ 70 (145)
T cd00077 66 EILRE 70 (145)
T ss_pred HHHHH
Confidence 98875
No 6
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=96.31 E-value=0.0079 Score=50.27 Aligned_cols=69 Identities=32% Similarity=0.528 Sum_probs=50.7
Q ss_pred CCCCCcchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCCCCCchHHHHhhcChhhhhcCCCchhhhhhHHH
Q psy7867 121 NPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAV 200 (484)
Q Consensus 121 npYHN~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdHPG~nN~Fli~t~s~LA~lYnD~SVLEnhH~a~ 200 (484)
++|+.+.|+..|++.+..+...... .+...+.+|||+||+|++...+.+..+.. .. .-|...
T Consensus 1 ~~~~~~~H~~~v~~~~~~l~~~~~~------~~~~~~~~a~LlHDig~~~~~~~~~~~~~-----------~~-~~h~~~ 62 (124)
T smart00471 1 SDYHVFEHSLRVAQLAAALAEELGL------LDIELLLLAALLHDIGKPGTPDSFLVKTS-----------VL-EDHHFI 62 (124)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCh------HHHHHHHHHHHHHcccCccCCHHHhcCcc-----------HH-HHhHHH
Confidence 4688999999999999988876542 45567899999999999998877653322 22 235566
Q ss_pred HHHHHhh
Q psy7867 201 AFKLLQN 207 (484)
Q Consensus 201 af~LL~~ 207 (484)
+..+++.
T Consensus 63 ~~~~~~~ 69 (124)
T smart00471 63 GAEILLE 69 (124)
T ss_pred HHHHHHh
Confidence 6677665
No 7
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This entry represents the catalytic domain of PDE which is multihelical and can be divided into three subdomains.; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0007165 signal transduction; PDB: 3I8V_A 3TVX_A 2QYK_A 1ZKL_A 3G3N_A 4DFF_B 2OUS_B 3SNL_A 2OUY_A 2OUP_B ....
Probab=95.40 E-value=0.071 Score=52.80 Aligned_cols=21 Identities=33% Similarity=0.725 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhccchhh
Q psy7867 220 QKQTLRKMVIDMVLSTDIRSQ 240 (484)
Q Consensus 220 ~~~~~Rk~VI~mILATDMa~~ 240 (484)
+++.+|++||++||||||+.|
T Consensus 98 ~~~~~r~~ii~~ILaTDm~~h 118 (237)
T PF00233_consen 98 DYQEFRKLIIELILATDMSKH 118 (237)
T ss_dssp HHHHHHHHHHHHHHTTSGGGH
T ss_pred hhHHHHHHHHHHHHhcchhhH
Confidence 357899999999999999976
No 8
>KOG3689|consensus
Probab=92.82 E-value=0.2 Score=56.82 Aligned_cols=47 Identities=28% Similarity=0.485 Sum_probs=32.3
Q ss_pred hcChhhhhcCCCchhhhhhHHHHHHHHhhhcchhcccCCHHHHHHHHHHHHHHHhhccchhh
Q psy7867 179 SSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQ 240 (484)
Q Consensus 179 t~s~LA~lYnD~SVLEnhH~a~af~LL~~~~~nif~~l~~~~~~~~Rk~VI~mILATDMa~~ 240 (484)
.+|.+|.-. ..|-.+.|. .|+-|... +|+++|++|+++||||||+.|
T Consensus 501 E~HH~~~~~---~lLqe~~~n-IfsnLs~~-----------~~~~~~~~i~~~ILATDla~h 547 (707)
T KOG3689|consen 501 ENHHFAQAF---KLLQEEGCN-IFSNLSKK-----------QYQQIRKLIIDAILATDLALH 547 (707)
T ss_pred HHHHHHHHH---HHHhccccc-hhhcCCHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 344454443 355555555 45555544 478999999999999999977
No 9
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=92.64 E-value=0.076 Score=44.84 Aligned_cols=48 Identities=17% Similarity=0.114 Sum_probs=39.0
Q ss_pred cchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCCCCCchHHHHh
Q psy7867 126 STHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLIN 178 (484)
Q Consensus 126 ~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdHPG~nN~Fli~ 178 (484)
+.|...|+..+..+....+. +.+...+.+||++||+|+......+...
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~-----~~~~~~l~~aaLlHDiGk~~~~~~~~~~ 49 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGL-----EEDRELLRIAALLHDIGKIPTPDFIEKK 49 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTH-----HHHHHHHHHHHHHTTTTHHSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCC-----chhHHHHHHHHHHHhcCCCCCchHHHHh
Confidence 46999999999888876544 8899999999999999999776554433
No 10
>KOG3688|consensus
Probab=91.91 E-value=0.22 Score=53.24 Aligned_cols=21 Identities=43% Similarity=0.726 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhhccchhh
Q psy7867 220 QKQTLRKMVIDMVLSTDIRSQ 240 (484)
Q Consensus 220 ~~~~~Rk~VI~mILATDMa~~ 240 (484)
+++.||-+||.|||||||+.|
T Consensus 315 e~relR~LViEmVLaTDms~H 335 (554)
T KOG3688|consen 315 EWRELRNLVIEMVLATDMSQH 335 (554)
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 367899999999999999965
No 11
>PRK10119 putative hydrolase; Provisional
Probab=90.95 E-value=0.3 Score=48.55 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCCCCCCCcchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCC
Q psy7867 108 NFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDH 168 (484)
Q Consensus 108 ~Fl~~v~~~Y~~~npYHN~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdH 168 (484)
+.-..|++.+.++.++|+|.|..=|...+-.|....+ .+...+.+||+.|||+.
T Consensus 9 ~~~~~v~~~l~~~~~~HD~~Hi~RV~~lA~~Ia~~e~-------~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 9 QFENWLKNHHQHQDAAHDICHFRRVWATAQKLAADDD-------VDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHHHHHHHHhhcCCCccChHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHhhcch
Confidence 3344455566556999999999999999988876542 35667789999999964
No 12
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=89.26 E-value=0.6 Score=50.03 Aligned_cols=72 Identities=26% Similarity=0.374 Sum_probs=50.5
Q ss_pred cchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCCC--CCchHHHHhhcChhhhhcCCCchhhhhhHHHHHH
Q psy7867 126 STHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHP--GLTNQFLINSSSELALMYNDESVLENHHLAVAFK 203 (484)
Q Consensus 126 ~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdHP--G~nN~Fli~t~s~LA~lYnD~SVLEnhH~a~af~ 203 (484)
-+|...|+|..-.+...-++... .|.+-++ =.|||+||+||| |.+..--+| ....-|+. . -|-|++|+
T Consensus 70 LTHSLEVAQIgRsia~~l~~~~~-~~~~dL~-E~a~LaHDiGhPPFGH~GE~ALn---~~m~~~gG---F--EGNAQ~fR 139 (412)
T COG0232 70 LTHSLEVAQIGRSIARELGLDLD-LPFEDLV-ETACLAHDIGHPPFGHAGEDALN---EVMREYGG---F--EGNAQTFR 139 (412)
T ss_pred chhhHHHHHHHHHHHHHhccccC-CChHHHH-HHHHHHhcCCCCCCCccHHHHHH---HHHHHcCC---C--cccchhhH
Confidence 47999999999887765544422 4444433 358999999999 666555555 45566665 3 38899999
Q ss_pred HHhh
Q psy7867 204 LLQN 207 (484)
Q Consensus 204 LL~~ 207 (484)
||.+
T Consensus 140 IlT~ 143 (412)
T COG0232 140 ILTK 143 (412)
T ss_pred HHHH
Confidence 9886
No 13
>KOG1229|consensus
Probab=86.00 E-value=0.57 Score=50.27 Aligned_cols=58 Identities=31% Similarity=0.480 Sum_probs=36.2
Q ss_pred hhcChhhhhcCCCchhhhhhHHHHHHHHhhhcchhcccCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHhhccc
Q psy7867 178 NSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEG 253 (484)
Q Consensus 178 ~t~s~LA~lYnD~SVLEnhH~a~af~LL~~~~~nif~~l~~~~~~~~Rk~VI~mILATDMa~~~~~~~f~~l~~~~ 253 (484)
-.++..|+.|. -.+-.|--|.+ |+-+.++ ++.++|..||+|||||||+.| |+.+.+|.
T Consensus 573 LEnHH~ALAFQ-LTlkdn~ncNI-FknidRe-----------~f~qlR~AiidMVLATdiskH-----FEhl~KF~ 630 (775)
T KOG1229|consen 573 LENHHIALAFQ-LTLKDNANCNI-FKNIDRE-----------EFIQLRHAIIDMVLATDISKH-----FEHLAKFN 630 (775)
T ss_pred hhhhhhhheee-eeeccCcccch-hhccCHH-----------HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 34455555553 34444445553 4444443 256889999999999999854 66665553
No 14
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=85.91 E-value=0.89 Score=49.03 Aligned_cols=78 Identities=21% Similarity=0.279 Sum_probs=52.1
Q ss_pred CCCCCCcc-----hhhhHHHHHHHHhhc--ccccccCcHHHHHHHHHHhhhccCCCCCCchHHHHhhcChhhhhcCCCch
Q psy7867 120 DNPFHNST-----HAADVTQSTNVLLNS--PALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESV 192 (484)
Q Consensus 120 ~npYHN~~-----HAaDV~Q~~~~lL~~--~~l~~~lt~lE~lAlliAAl~HDvdHPG~nN~Fli~t~s~LA~lYnD~SV 192 (484)
..-||++. |..=|.+.+-.++.. .......++.+...+.+|||.|||||+-++=.|..-....+-.
T Consensus 42 ~lvyPgAnHTRFeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDIGHgPFSH~fE~~~~~~~~~------- 114 (421)
T COG1078 42 YLVYPGANHTRFEHSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAALLHDIGHGPFSHTFEYVLDKNLGF------- 114 (421)
T ss_pred eEecCCCcccccchhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHccCCCccccchHHHhcccccc-------
Confidence 35677655 556676666666553 2233556778888999999999999999988876433222211
Q ss_pred hhhhhHHHHHHHHhh
Q psy7867 193 LENHHLAVAFKLLQN 207 (484)
Q Consensus 193 LEnhH~a~af~LL~~ 207 (484)
.|-.++-.+...
T Consensus 115 ---~He~~~~~ii~~ 126 (421)
T COG1078 115 ---YHEDVTQRIIKN 126 (421)
T ss_pred ---cHHHHHHHHhcC
Confidence 577777777664
No 15
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=85.79 E-value=1.6 Score=34.25 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=41.6
Q ss_pred cchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCCCCCchHHHHhhcChhhhhcCCCchhhhhhHHHHHHHH
Q psy7867 126 STHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLL 205 (484)
Q Consensus 126 ~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdHPG~nN~Fli~t~s~LA~lYnD~SVLEnhH~a~af~LL 205 (484)
+.|+..|+..+..+....+ ++. -.+.+||++||+|-+..++.. .-.-|...+..++
T Consensus 6 ~~H~~~v~~~a~~la~~~~----~~~---~~l~~AalLHDiG~~~~~~~~-----------------~~~~H~~~g~~~l 61 (80)
T TIGR00277 6 LQHSLEVAKLAEALARELG----LDV---ELARRGALLHDIGKPITREGV-----------------IFESHAVVGAEIA 61 (80)
T ss_pred HHHHHHHHHHHHHHHHHcC----CCH---HHHHHHHHHHccCCcccchHH-----------------HHHchHHHHHHHH
Confidence 5799999999988876543 233 237799999999998764332 2244888888888
Q ss_pred hh
Q psy7867 206 QN 207 (484)
Q Consensus 206 ~~ 207 (484)
..
T Consensus 62 ~~ 63 (80)
T TIGR00277 62 RK 63 (80)
T ss_pred HH
Confidence 75
No 16
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=84.15 E-value=1.2 Score=46.78 Aligned_cols=69 Identities=17% Similarity=0.164 Sum_probs=45.1
Q ss_pred cchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCCCCCchHHHHhhcChhhhhcCCCchhhhhhHHHHHHHH
Q psy7867 126 STHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLL 205 (484)
Q Consensus 126 ~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdHPG~nN~Fli~t~s~LA~lYnD~SVLEnhH~a~af~LL 205 (484)
+.|..-|+|..-.+...-++ +. + .+-.|||+||+|||-+.-.+...-+. +..-|+ --.|-+.+++|+
T Consensus 64 ~~Hsl~V~~iar~~~~~l~~----~~-~--l~~aaaL~HDiGh~PfgH~gE~~l~~-~~~~~~-----~f~hn~~s~ri~ 130 (336)
T PRK01286 64 LTHTLEVAQIARTIARALRL----NE-D--LTEAIALGHDLGHTPFGHAGEDALNE-LMKEYG-----GFEHNEQSLRVV 130 (336)
T ss_pred HHHHHHHHHHHHHHHHHhCC----CH-H--HHHHHHHHhcCCCCCCcchHHHHHHH-hccccC-----CCcHHHHHHHHH
Confidence 58999999998888764332 21 2 23458999999999887666532211 111121 246888999998
Q ss_pred hh
Q psy7867 206 QN 207 (484)
Q Consensus 206 ~~ 207 (484)
..
T Consensus 131 ~~ 132 (336)
T PRK01286 131 DK 132 (336)
T ss_pred HH
Confidence 75
No 17
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=82.56 E-value=22 Score=41.85 Aligned_cols=40 Identities=18% Similarity=0.439 Sum_probs=29.9
Q ss_pred HHHhhcCCCCCCCChhHHHHHHHHHHHHHHhcchHHHhcCCC
Q psy7867 320 NLVHCADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLD 361 (484)
Q Consensus 320 ~ll~~ADISn~~rp~~v~~kWs~~l~eEFf~QGD~Er~lgl~ 361 (484)
.+++.||+..+.- .+...|...+..|.|.....--+.|..
T Consensus 560 ~lLt~ADi~at~~--~~wn~Wk~~LL~eLY~~t~~~L~~g~~ 599 (854)
T PRK01759 560 TCLTVADICATNE--TLWNSWKRSLFATLYQFTNQQFQQGMD 599 (854)
T ss_pred HHHHHhHhhccCc--chhhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 5789999966543 588899999999999876554444543
No 18
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=82.43 E-value=0.92 Score=48.26 Aligned_cols=81 Identities=19% Similarity=0.059 Sum_probs=48.9
Q ss_pred CCCC-cchhhhHHHHHHHHhhccccc--c--cCcHHHHHHHHHHhhhccCCCCCCchHHHHhhcChhhhhcCCCchhhhh
Q psy7867 122 PFHN-STHAADVTQSTNVLLNSPALE--D--VFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENH 196 (484)
Q Consensus 122 pYHN-~~HAaDV~Q~~~~lL~~~~l~--~--~lt~lE~lAlliAAl~HDvdHPG~nN~Fli~t~s~LA~lYnD~SVLEnh 196 (484)
.||| ++|..-|+|..-.+...-... . .......-.+-.|||+||+|||-+.-.+...-+. +..-|+. -=.
T Consensus 35 ~~~tRltHslev~~i~r~~~~~l~~~~~~~~~~~~~~~~l~~~a~L~HDiGhpPfgH~gE~~l~~-~~~~~g~----~f~ 109 (381)
T TIGR01353 35 FVRTRLTHSLEVAQVGRSIANLIGLRYDLELEELGPFERLAETACLAHDIGNPPFGHAGERALND-WMREYGP----GFE 109 (381)
T ss_pred CCcCHhHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHhcCCCCCCcccHHHHHHH-HHHhcCC----CCC
Confidence 3666 589999999998776532210 0 0111133456789999999999776555422211 1122220 224
Q ss_pred hHHHHHHHHhh
Q psy7867 197 HLAVAFKLLQN 207 (484)
Q Consensus 197 H~a~af~LL~~ 207 (484)
|-+.+++||.+
T Consensus 110 ~n~q~~ri~~~ 120 (381)
T TIGR01353 110 GNAQTFRILTT 120 (381)
T ss_pred hHHHHHHHHHH
Confidence 88899999886
No 19
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=79.41 E-value=4.5 Score=39.86 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=46.5
Q ss_pred hcCCCHHHHHHHHHHHHHhcC--------CCCCCCCc-----chhhhHHHHHHHHhhcccccccCcH--------HHHHH
Q psy7867 98 TFLIPAKTFINFMMTLEDHYV--------KDNPFHNS-----THAADVTQSTNVLLNSPALEDVFTP--------LEIMA 156 (484)
Q Consensus 98 ~f~I~~~~L~~Fl~~v~~~Y~--------~~npYHN~-----~HAaDV~Q~~~~lL~~~~l~~~lt~--------lE~lA 156 (484)
..+|+...+.++...+-..|- ...-.|+. .|...|+.++..+.....+..-.++ .-..+
T Consensus 28 ~~~l~~~~~~~l~~~~l~~~~~~~~~~PAs~~~Hha~~GGLl~HtLev~~~a~~l~~~y~~p~~~~~e~~~~~~~~w~~~ 107 (218)
T TIGR03760 28 NSSLSAAVYEQLYLQPLERLAELVQQLPASENHHHAYLGGLLDHTLEVTAAAVRLSKGYLLPPGAAPEEQAAQSDAWNAA 107 (218)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHHHhCCCCCcCCccccchHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhHHHHHH
Confidence 456777777766555444431 13446665 7889999988887764432222233 22468
Q ss_pred HHHHhhhccCCCC
Q psy7867 157 ALFAATIHDVDHP 169 (484)
Q Consensus 157 lliAAl~HDvdHP 169 (484)
+++|||+||+|-+
T Consensus 108 ~~~aaLlHDlgK~ 120 (218)
T TIGR03760 108 VFYAALLHDLGKL 120 (218)
T ss_pred HHHHHHHHhhhhh
Confidence 9999999999877
No 20
>KOG2681|consensus
Probab=79.15 E-value=4.5 Score=43.65 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=39.8
Q ss_pred CCCCCC-cchhhhHHHHHHH---Hhhccc-ccccCcHHHHHHHHHHhhhccCCCCCCchHHHHh
Q psy7867 120 DNPFHN-STHAADVTQSTNV---LLNSPA-LEDVFTPLEIMAALFAATIHDVDHPGLTNQFLIN 178 (484)
Q Consensus 120 ~npYHN-~~HAaDV~Q~~~~---lL~~~~-l~~~lt~lE~lAlliAAl~HDvdHPG~nN~Fli~ 178 (484)
+.+=|+ |.|..=|--.... .|.... ....+++.+..|.=+|||+||+||--++-.|.-.
T Consensus 68 p~A~HsRfeHsLG~~~lA~~~v~~L~~~q~~El~It~~d~~~vqvA~LLHDIGHGPfSHmFe~~ 131 (498)
T KOG2681|consen 68 PGANHSRFEHSLGTYTLAGILVNALNKNQCPELCITEVDLQAVQVAALLHDIGHGPFSHLFEGE 131 (498)
T ss_pred cCCccchhhhhhhhHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhhe
Confidence 344444 3455444333333 333333 5667999999999999999999999888888643
No 21
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=77.38 E-value=3 Score=45.18 Aligned_cols=77 Identities=16% Similarity=0.199 Sum_probs=46.2
Q ss_pred CCC-cchhhhHHHHHHHHhhcc------cccccCcHHHHHHHHHHhhhccCCCCCCchHHHHhhcChhhhhcCCCchhhh
Q psy7867 123 FHN-STHAADVTQSTNVLLNSP------ALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLEN 195 (484)
Q Consensus 123 YHN-~~HAaDV~Q~~~~lL~~~------~l~~~lt~lE~lAlliAAl~HDvdHPG~nN~Fli~t~s~LA~lYnD~SVLEn 195 (484)
||| ++|..-|+|..-.+...- .+...+ +.+- .+-.|||+||+|||-+.-.+....+ .+..-|+. =
T Consensus 56 ~~tRltHslev~~i~r~~~~~~~~~~~~~~~~~~-~~~~-l~~a~~L~HDiGhpPfgH~gE~~L~-~~~~~~gg-----F 127 (432)
T PRK05318 56 YRTRLTHSLEVAQIGTGIVAQLKKEKQPELKPLL-PSDS-LIESLCLAHDIGHPPFGHGGEVALN-YMMRDHGG-----F 127 (432)
T ss_pred CcChhHHHHHHHHHHHHHHHHHhhcccccccccc-ccHH-HHHHHHHHhcCCCCCCcccHHHHHH-HHHHhcCC-----C
Confidence 455 589999999987766532 111111 1121 2347889999999977665543322 12222221 2
Q ss_pred hhHHHHHHHHhh
Q psy7867 196 HHLAVAFKLLQN 207 (484)
Q Consensus 196 hH~a~af~LL~~ 207 (484)
.|-+.+|+||.+
T Consensus 128 EgNaQslRIlt~ 139 (432)
T PRK05318 128 EGNGQTFRILTK 139 (432)
T ss_pred chHHHHHHHHHH
Confidence 489999999986
No 22
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=76.45 E-value=23 Score=42.00 Aligned_cols=40 Identities=18% Similarity=0.517 Sum_probs=30.4
Q ss_pred HHHhhcCCCCCCCChhHHHHHHHHHHHHHHhcchHHHhcCCC
Q psy7867 320 NLVHCADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLD 361 (484)
Q Consensus 320 ~ll~~ADISn~~rp~~v~~kWs~~l~eEFf~QGD~Er~lgl~ 361 (484)
+++..||+.... | .....|...+..|.|.....--+.|.+
T Consensus 584 ~lLT~ADi~at~-~-~~wn~wk~~Ll~~Ly~~t~~~L~~g~~ 623 (895)
T PRK00275 584 YVLTVADINATN-P-TLWNSWRASLLRQLYTETKRALRRGLE 623 (895)
T ss_pred HHHHHHHhhccC-c-chhHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 578999996654 3 788999999999999876554444544
No 23
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=75.41 E-value=2 Score=46.40 Aligned_cols=72 Identities=18% Similarity=0.099 Sum_probs=46.9
Q ss_pred CCC-cchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCCCCCchHHHHhhcChhhhhcCCCchhhhhhHHHH
Q psy7867 123 FHN-STHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVA 201 (484)
Q Consensus 123 YHN-~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdHPG~nN~Fli~t~s~LA~lYnD~SVLEnhH~a~a 201 (484)
||| ++|+.-|+|..-.+...-++ + .-.+-.|||+||+|||-+.-...... +.+..-|+ ==.|-|.+
T Consensus 68 ~~tRltHslev~~~~r~~~~~~~~----~---~~~~~~~~l~hd~GhpPfgH~gE~~l-~~~~~~~g-----gFEGNAQs 134 (428)
T PRK03007 68 PRTRLTHSLEVAQIGRGIAAGLGC----D---PDLVDLAGLAHDIGHPPYGHNGERAL-DEVAADCG-----GFEGNAQT 134 (428)
T ss_pred cccHHHHHHHHHHHHHHHHHHhCC----C---HHHHHHHHHHhcCCCCCCcccHHHHH-HHHHHhCC-----CCchHHHH
Confidence 455 58999999999888764432 1 22456899999999996654433221 11222232 12488999
Q ss_pred HHHHhh
Q psy7867 202 FKLLQN 207 (484)
Q Consensus 202 f~LL~~ 207 (484)
|+||.+
T Consensus 135 lRIlt~ 140 (428)
T PRK03007 135 LRILTR 140 (428)
T ss_pred HHHHHH
Confidence 999986
No 24
>PRK05092 PII uridylyl-transferase; Provisional
Probab=75.07 E-value=25 Score=41.70 Aligned_cols=40 Identities=13% Similarity=0.341 Sum_probs=29.7
Q ss_pred HHHhhcCCCCCCCChhHHHHHHHHHHHHHHhcchHHHhcCCC
Q psy7867 320 NLVHCADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLD 361 (484)
Q Consensus 320 ~ll~~ADISn~~rp~~v~~kWs~~l~eEFf~QGD~Er~lgl~ 361 (484)
+++..||+.... | .....|...+..|.|.....--+.|+.
T Consensus 617 ~~Lt~ADi~a~~-~-~~wn~wk~~Ll~~Ly~~t~~~l~~~~~ 656 (931)
T PRK05092 617 LILTVADIRAVG-P-GVWNGWKAQLLRTLYYETEEVLTGGFS 656 (931)
T ss_pred HHHHHHhhcccC-c-chHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 578999987665 2 688889999999999876554444544
No 25
>PRK05007 PII uridylyl-transferase; Provisional
Probab=74.67 E-value=20 Score=42.30 Aligned_cols=40 Identities=18% Similarity=0.440 Sum_probs=29.1
Q ss_pred HHHhhcCCCCCCCChhHHHHHHHHHHHHHHhcchHHHhcCCC
Q psy7867 320 NLVHCADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLD 361 (484)
Q Consensus 320 ~ll~~ADISn~~rp~~v~~kWs~~l~eEFf~QGD~Er~lgl~ 361 (484)
.+++.||+....- .+...|...+..|.|......-+.|..
T Consensus 585 ~~Lt~AD~~a~~p--~~wn~Wk~~LL~eLy~~t~~~L~~~~~ 624 (884)
T PRK05007 585 VCLTVADICATNE--TLWNSWKQSLLRELYFATEKQLRRGME 624 (884)
T ss_pred HHHHHhhhcccCc--chhhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5789999955443 588899999999999876554433443
No 26
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=73.65 E-value=51 Score=38.03 Aligned_cols=44 Identities=9% Similarity=0.084 Sum_probs=30.7
Q ss_pred HHhhcCCCCCCCChhHHHHHHHHHHHHHHhcchHHHhcCCCCCCCC
Q psy7867 321 LVHCADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMC 366 (484)
Q Consensus 321 ll~~ADISn~~rp~~v~~kWs~~l~eEFf~QGD~Er~lgl~iSp~~ 366 (484)
++..||+....- .+...|...+..|.|.....--.-+-++.|..
T Consensus 491 lLt~ADi~Atgp--~~Wn~wka~Ll~~L~~~a~~~L~~~~~~~p~~ 534 (693)
T PRK00227 491 VLTEADAEGTGP--GVWTARLEQGLRIVCSRARARLTDIRPVAPMF 534 (693)
T ss_pred HHHHhhhccCCC--CcccHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 589999855443 46788999999999988755444444445543
No 27
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=72.16 E-value=3.5 Score=44.81 Aligned_cols=54 Identities=24% Similarity=0.265 Sum_probs=32.5
Q ss_pred CCCC-cchhhhHHHHHHHHhhccc--c-----cccCcHHHH-HHHHHHhhhccCCCCCCchHH
Q psy7867 122 PFHN-STHAADVTQSTNVLLNSPA--L-----EDVFTPLEI-MAALFAATIHDVDHPGLTNQF 175 (484)
Q Consensus 122 pYHN-~~HAaDV~Q~~~~lL~~~~--l-----~~~lt~lE~-lAlliAAl~HDvdHPG~nN~F 175 (484)
-+|| ++|..-|+|..-.+...-. + .....+.+. -.+-.|||+||+|||-+.-..
T Consensus 58 ~~~tRltHsleV~~i~r~i~~~l~~~l~~~~~~~~~~~~~~~~lv~aa~L~HDiGhpPFgH~g 120 (440)
T PRK01096 58 HIHTRLTHSLEVSCVGRSLGMRVGETLKEEKLPDWISPADIGAIVQSACLAHDIGNPPFGHFG 120 (440)
T ss_pred CCcCHhHHHHHHHHHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHhcCCCCCCcccH
Confidence 3455 5899999999876643211 1 111111111 245789999999999665443
No 28
>PRK04926 dgt deoxyguanosinetriphosphate triphosphohydrolase; Provisional
Probab=70.05 E-value=3.8 Score=45.21 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=31.0
Q ss_pred CCCCCC-cchhhhHHHHHHHHhhcc-------ccc--ccCc--HHHHH-HHHHHhhhccCCCCCCc
Q psy7867 120 DNPFHN-STHAADVTQSTNVLLNSP-------ALE--DVFT--PLEIM-AALFAATIHDVDHPGLT 172 (484)
Q Consensus 120 ~npYHN-~~HAaDV~Q~~~~lL~~~-------~l~--~~lt--~lE~l-AlliAAl~HDvdHPG~n 172 (484)
+-.+|| .+|..-|+|..-.+...- ... ..++ +.+.- .+-.|||+||+|||-+.
T Consensus 60 nd~~rtRltHSleV~~i~r~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~lveaa~L~HDiGhpPFG 125 (503)
T PRK04926 60 NAAVRSRLTHSLEVQQVGRYIAKEILSRLKEQKLLEAYGLDELTGPFESIVEMACLMHDIGNPPFG 125 (503)
T ss_pred CCCeeCHhHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchHHHHHHHHHHhcCCCCCCc
Confidence 345666 489999998877554321 000 0122 11222 33589999999999655
No 29
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=69.93 E-value=42 Score=39.41 Aligned_cols=40 Identities=15% Similarity=0.413 Sum_probs=29.2
Q ss_pred HHHhhcCCCCCCCChhHHHHHHHHHHHHHHhcchHHHhcCCC
Q psy7867 320 NLVHCADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLD 361 (484)
Q Consensus 320 ~ll~~ADISn~~rp~~v~~kWs~~l~eEFf~QGD~Er~lgl~ 361 (484)
+++..||+.... | .....|...+..|.|.....--+.|+.
T Consensus 552 ~~Lt~AD~~a~~-~-~~w~~wk~~Ll~~Ly~~t~~~l~~~~~ 591 (850)
T TIGR01693 552 LALTVADIRATG-P-GVWNSWKASLLRDLYNRTEQVLRGGLE 591 (850)
T ss_pred HHHHHHhhhccC-c-chhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 467889986544 2 578889999999999887666555543
No 30
>PRK03059 PII uridylyl-transferase; Provisional
Probab=68.80 E-value=34 Score=40.36 Aligned_cols=33 Identities=18% Similarity=0.489 Sum_probs=26.5
Q ss_pred HHHhhcCCCCCCCChhHHHHHHHHHHHHHHhcchH
Q psy7867 320 NLVHCADLSNPTKPLPLYRKWVDLLMEEFFQQGDK 354 (484)
Q Consensus 320 ~ll~~ADISn~~rp~~v~~kWs~~l~eEFf~QGD~ 354 (484)
+++..||+.... -.+...|...+..|.|.....
T Consensus 564 ~lLt~AD~~a~~--~~~wn~Wk~~LL~~Ly~~t~~ 596 (856)
T PRK03059 564 YLLTVADIRGTS--PKVWNAWKGKLLEDLYRATLR 596 (856)
T ss_pred HhHHHHhhhccC--cchhhHHHHHHHHHHHHHHHH
Confidence 578999996544 378999999999999987643
No 31
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=67.70 E-value=7.8 Score=36.19 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=49.9
Q ss_pred HHHhcCCCCCCCCcchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCCCCCchHHHHhhcChhhhhcCCCch
Q psy7867 113 LEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESV 192 (484)
Q Consensus 113 v~~~Y~~~npYHN~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdHPG~nN~Fli~t~s~LA~lYnD~SV 192 (484)
+-+.| ..+=+-+.|...|+..+..+....+.... ..+.-.+.+||+.||+|-....+
T Consensus 4 ll~~~--~~~~~~~~Hs~~Va~~A~~ia~~~~~~~~--~~d~~~l~~aaLLHDIGK~~~~~------------------- 60 (164)
T TIGR00295 4 LLDKY--KCDESVRRHCLAVARVAMELAENIRKKGH--EVDMDLVLKGALLHDIGRARTHG------------------- 60 (164)
T ss_pred HHHHh--CCCccHHHHHHHHHHHHHHHHHHhccccc--cCCHHHHHHHHHHhcCCcccCCC-------------------
Confidence 34556 34566889999999999888775432111 23555679999999998765321
Q ss_pred hhhhhHHHHHHHHhhhc
Q psy7867 193 LENHHLAVAFKLLQNEG 209 (484)
Q Consensus 193 LEnhH~a~af~LL~~~~ 209 (484)
--|...+..+|.+.+
T Consensus 61 --~~H~~~G~~iL~~~g 75 (164)
T TIGR00295 61 --FEHFVKGAEILRKEG 75 (164)
T ss_pred --CCHHHHHHHHHHHcC
Confidence 258888889988754
No 32
>PRK03381 PII uridylyl-transferase; Provisional
Probab=67.30 E-value=70 Score=37.32 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=26.1
Q ss_pred HHHhhcCCCCCCCChhHHHHHHHHHHHHHHhcchHHHhcC
Q psy7867 320 NLVHCADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELN 359 (484)
Q Consensus 320 ~ll~~ADISn~~rp~~v~~kWs~~l~eEFf~QGD~Er~lg 359 (484)
++++.||+..... .....|...+..|.|......-+.|
T Consensus 530 ~~Lt~AD~~a~~~--~~wn~wk~~ll~~L~~~~~~~l~~~ 567 (774)
T PRK03381 530 HALTEADSLATGP--GVWSDWKASLVGDLVRRCRAVLAGE 567 (774)
T ss_pred HHHHHhhccccCc--chhhHHHHHHHHHHHHHHHHHHhCC
Confidence 4678899966543 3456888888888887765554433
No 33
>PRK04374 PII uridylyl-transferase; Provisional
Probab=64.91 E-value=91 Score=36.95 Aligned_cols=40 Identities=23% Similarity=0.566 Sum_probs=29.9
Q ss_pred HHHhhcCCCCCCCChhHHHHHHHHHHHHHHhcchHHHhcCCC
Q psy7867 320 NLVHCADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLD 361 (484)
Q Consensus 320 ~ll~~ADISn~~rp~~v~~kWs~~l~eEFf~QGD~Er~lgl~ 361 (484)
.+++.||+.... -.....|...+..|.|.....--+.|..
T Consensus 573 ~~Lt~ADi~a~~--~~~wn~Wk~~LL~~Ly~~t~~~L~~g~~ 612 (869)
T PRK04374 573 YLLTCADIAGTS--PKLWNAWKDRLLADLYFAARRALREGLE 612 (869)
T ss_pred HhHHHHHccCCC--cchhhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 468999996655 2677999999999999876554444544
No 34
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=63.66 E-value=5.4 Score=39.36 Aligned_cols=58 Identities=19% Similarity=0.112 Sum_probs=41.2
Q ss_pred CCcchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCCCCCchHH--HHhhcChhhhhcC
Q psy7867 124 HNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQF--LINSSSELALMYN 188 (484)
Q Consensus 124 HN~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdHPG~nN~F--li~t~s~LA~lYn 188 (484)
|.+.|...|+-.++.|-... ..+...+..|||.||+|+.=.++.. +......+|..|+
T Consensus 36 ~~l~H~~~Va~lA~~Ia~~~-------g~D~~l~~~aaLLHDIg~~~~~~~~~~h~~~gae~a~~~~ 95 (222)
T COG1418 36 HVLEHSLRVAYLAYRIAEEE-------GVDPDLALRAALLHDIGKAIDHEPGGSHAEIGAEIARKFL 95 (222)
T ss_pred hHHHHHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHhhccccccCCccchHHHHHHHHHHHc
Confidence 99999999999999988763 2366788999999999977444421 3333334444443
No 35
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=60.64 E-value=8.9 Score=38.03 Aligned_cols=63 Identities=11% Similarity=0.192 Sum_probs=41.6
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCCCCCCcchhhhHHHHHHHHhhcc--cccccCcHHHHHHHHHHhhhccCCC
Q psy7867 98 TFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSP--ALEDVFTPLEIMAALFAATIHDVDH 168 (484)
Q Consensus 98 ~f~I~~~~L~~Fl~~v~~~Y~~~npYHN~~HAaDV~Q~~~~lL~~~--~l~~~lt~lE~lAlliAAl~HDvdH 168 (484)
.+.||...+.+-+...-..+. +-|.+.|..-|..+...+.... +. -+++ ..+++||+.||+|=
T Consensus 32 ~~~iPdt~l~~~a~~~~~~~l---~~~~~~Hs~RV~~~a~~ia~~e~~~~--~~D~---evl~lAALLHDIG~ 96 (228)
T TIGR03401 32 DTPLPDTPLVKFAQEYAKARL---PPETYNHSLRVYYYGLAIARDQFPEW--DLSD---ETWFLTCLLHDIGT 96 (228)
T ss_pred CCCCCChHHHHHHHHHHHhhC---CHhhhHHHHHHHHHHHHHHHHhcccc--CCCH---HHHHHHHHHHhhcc
Confidence 355666666655555554442 2399999999999987776532 11 1333 34789999999973
No 36
>PRK12704 phosphodiesterase; Provisional
Probab=54.67 E-value=24 Score=39.16 Aligned_cols=76 Identities=17% Similarity=0.231 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhcCCCCCCC-CcchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCCCCCchHHHHhhcChh
Q psy7867 105 TFINFMMTLEDHYVKDNPFH-NSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSEL 183 (484)
Q Consensus 105 ~L~~Fl~~v~~~Y~~~npYH-N~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdHPG~nN~Fli~t~s~L 183 (484)
.+..+|..+ .| ++..-. -+.|+..|+..+..+-...+ +++-. +.+||+.||+|-.-. . .
T Consensus 318 ~i~~ll~~l--~~-R~~~~qn~l~Hs~~Va~lA~~lA~~lg----ld~~~---a~~AgLLHDIGK~~~-~--------e- 377 (520)
T PRK12704 318 ELIKLLGRL--KY-RTSYGQNVLQHSIEVAHLAGLMAAELG----LDVKL---AKRAGLLHDIGKALD-H--------E- 377 (520)
T ss_pred HHHHHHHHh--hc-cCcCCCcHhHHHHHHHHHHHHHHHHhC----cCHHH---HHHHHHHHccCcCcc-c--------c-
Confidence 356666666 44 222222 46799999999998887644 34333 468999999998731 0 0
Q ss_pred hhhcCCCchhhhhhHHHHHHHHhhhc
Q psy7867 184 ALMYNDESVLENHHLAVAFKLLQNEG 209 (484)
Q Consensus 184 A~lYnD~SVLEnhH~a~af~LL~~~~ 209 (484)
.+..|+..+..+++..+
T Consensus 378 ---------~~~~H~~iGa~il~~~~ 394 (520)
T PRK12704 378 ---------VEGSHVEIGAELAKKYK 394 (520)
T ss_pred ---------ccCCHHHHHHHHHHHcC
Confidence 13459999999998753
No 37
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=52.20 E-value=92 Score=31.30 Aligned_cols=109 Identities=20% Similarity=0.207 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcchhhhHHH---HHHHHhhccccc------ccCc-HHHHHHHHHHhhhccCCCCCCchH
Q psy7867 105 TFINFMMTLEDHYVKDNPFHNSTHAADVTQ---STNVLLNSPALE------DVFT-PLEIMAALFAATIHDVDHPGLTNQ 174 (484)
Q Consensus 105 ~L~~Fl~~v~~~Y~~~npYHN~~HAaDV~Q---~~~~lL~~~~l~------~~lt-~lE~lAlliAAl~HDvdHPG~nN~ 174 (484)
++.|.+..-+.+| ++ |+..||.-|+- .+|-+|...++. ...+ .-..+..+++|..||+||.=.
T Consensus 42 ~maNv~av~RlgY-ND---HG~vHa~Iva~~Al~i~~lL~~~Gv~ps~v~dg~gd~eD~~vivlLga~LHDIGnsVH--- 114 (269)
T COG3294 42 KMANVMAVGRLGY-ND---HGPVHARIVANSALAIYKLLLEKGVKPSGVTDGVGDEEDSPVIVLLGAYLHDIGNSVH--- 114 (269)
T ss_pred HHhhhhhhhhhcc-cC---CCceeeeeccchHHHHHHHHHhcCCCcccccccCCchhhhhHHHHHHHHHHhccchhc---
Confidence 3455666677888 44 77888866644 445555544432 1222 234567889999999996511
Q ss_pred HHHhhcChhhhhcCCCchhhhhhHHHHHHHHhhhcchhcccCCHHHHHHHHHHHHHHHhhccc
Q psy7867 175 FLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDI 237 (484)
Q Consensus 175 Fli~t~s~LA~lYnD~SVLEnhH~a~af~LL~~~~~nif~~l~~~~~~~~Rk~VI~mILATDM 237 (484)
.+. -|-|.+.++..|+.+-=.-||... +.+-.+|.-|..+|.++|-
T Consensus 115 ---Rd~------------H~~~sa~La~~IldrIL~kiy~~~--~k~~~~rsevlhAI~ch~~ 160 (269)
T COG3294 115 ---RDD------------HELYSAVLALDILDRILSKIYPDP--EKAVRVRSEVLHAIYCHDE 160 (269)
T ss_pred ---ccc------------HHHHhHHHhHHHHHHHhhhhcCCH--HHHHhHHHHHHHHhhccCC
Confidence 122 244556667777765211233322 4555667777777777764
No 38
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=51.82 E-value=21 Score=38.36 Aligned_cols=16 Identities=31% Similarity=0.270 Sum_probs=13.6
Q ss_pred HHHHHhhhccCCCCCC
Q psy7867 156 AALFAATIHDVDHPGL 171 (484)
Q Consensus 156 AlliAAl~HDvdHPG~ 171 (484)
.+.+||||||+|-|.+
T Consensus 247 ~lr~AaLlHDlGK~~t 262 (409)
T PRK10885 247 DVRFAALCHDLGKGLT 262 (409)
T ss_pred HHHHHHHhccccCCCC
Confidence 5889999999998753
No 39
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=51.78 E-value=21 Score=37.66 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=42.7
Q ss_pred CCCCcchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCCCCCchHHHHhhcChhhhhcCCCchhhhhhHHHH
Q psy7867 122 PFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVA 201 (484)
Q Consensus 122 pYHN~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdHPG~nN~Fli~t~s~LA~lYnD~SVLEnhH~a~a 201 (484)
+-+-+.|...|+..+..+....+ .+.-.++.|||.||+|....+. -.|...+
T Consensus 185 ~e~l~~Hs~rVa~lA~~LA~~~~-------~D~~ll~aAALLHDIGK~k~~~---------------------~~H~~~G 236 (339)
T PRK12703 185 SDLLIRHVKTVYKLAMRIADCIN-------ADRRLVAAGALLHDIGRTKTNG---------------------IDHAVAG 236 (339)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcC-------CCHHHHHHHHHHHhcccccccC---------------------CCHHHHH
Confidence 33468899999999988876543 2234567899999999864321 1377778
Q ss_pred HHHHhhhc
Q psy7867 202 FKLLQNEG 209 (484)
Q Consensus 202 f~LL~~~~ 209 (484)
.++|++.+
T Consensus 237 a~iL~e~G 244 (339)
T PRK12703 237 AEILRKEN 244 (339)
T ss_pred HHHHHHCC
Confidence 88888754
No 40
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=51.77 E-value=56 Score=25.85 Aligned_cols=18 Identities=22% Similarity=0.512 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhhccch
Q psy7867 221 KQTLRKMVIDMVLSTDIR 238 (484)
Q Consensus 221 ~~~~Rk~VI~mILATDMa 238 (484)
|.-||+.|.+||.+..+.
T Consensus 5 ~~DFr~SM~EMI~~~~i~ 22 (59)
T PF04844_consen 5 YEDFRESMVEMIEENGIR 22 (59)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 667888888888887764
No 41
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=49.84 E-value=37 Score=37.75 Aligned_cols=76 Identities=14% Similarity=0.176 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhcCCCCCCC-CcchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCCCCCchHHHHhhcChh
Q psy7867 105 TFINFMMTLEDHYVKDNPFH-NSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSEL 183 (484)
Q Consensus 105 ~L~~Fl~~v~~~Y~~~npYH-N~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdHPG~nN~Fli~t~s~L 183 (484)
.+..+|..++ | +...-. .|.|+..|+..+..|-...+ +++-. +..|||.||+|.....
T Consensus 312 ~~~~~l~~l~--~-r~~~~~~~l~Hs~~VA~lA~~LA~~lg----ld~~~---a~~AGLLHDIGK~~~~----------- 370 (514)
T TIGR03319 312 ELIKLLGRLK--F-RTSYGQNVLQHSIEVAHLAGIMAAELG----EDVKL---AKRAGLLHDIGKAVDH----------- 370 (514)
T ss_pred HHHHHHHHhh--c-cccCCccHHHHHHHHHHHHHHHHHHhC----cCHHH---HHHHHHHHhcCcccch-----------
Confidence 3456666644 4 222222 47899999999998887643 34432 3479999999997310
Q ss_pred hhhcCCCchhhhhhHHHHHHHHhhhc
Q psy7867 184 ALMYNDESVLENHHLAVAFKLLQNEG 209 (484)
Q Consensus 184 A~lYnD~SVLEnhH~a~af~LL~~~~ 209 (484)
-.+.-|+..+..++.+.+
T Consensus 371 --------e~~~~H~~~Ga~ll~~~~ 388 (514)
T TIGR03319 371 --------EVEGSHVEIGAELAKKYK 388 (514)
T ss_pred --------hhcccHHHHHHHHHHHcC
Confidence 013459999999998643
No 42
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=49.65 E-value=20 Score=37.41 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=46.5
Q ss_pred CCCCCCcchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCCCCCchHHHHhhc
Q psy7867 120 DNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSS 180 (484)
Q Consensus 120 ~npYHN~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdHPG~nN~Fli~t~ 180 (484)
.--...+.|...|+-.+-.+-..-+ |++-++..+.+||++||+|=-|+.+.-+.+..
T Consensus 144 ~kd~~t~~Hs~~va~~a~~ia~~lg----l~~~~i~~l~~aalLHDIGKi~ip~~IL~K~g 200 (344)
T COG2206 144 AKDDYTYGHSVRVAELAEAIAKKLG----LSEEKIEELALAGLLHDIGKIGIPDSILNKPG 200 (344)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHhhcccccCCHHHhCCCC
Confidence 3444477899999988888776554 89999999999999999999999988775553
No 43
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=49.56 E-value=30 Score=31.86 Aligned_cols=72 Identities=19% Similarity=0.107 Sum_probs=44.6
Q ss_pred CCcchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCCCCCchHHHHhhcChhhhhcCC-----CchhhhhhH
Q psy7867 124 HNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYND-----ESVLENHHL 198 (484)
Q Consensus 124 HN~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdHPG~nN~Fli~t~s~LA~lYnD-----~SVLEnhH~ 198 (484)
+.+.|..-|+..+..+-...+ +++ + .+.+|+++||+|........... +..++- ....+-.|.
T Consensus 8 ~r~~Hsl~Va~~a~~lA~~~~----~d~-e--~a~~AGLLHDIGk~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~H~ 75 (158)
T TIGR00488 8 HRYQHCLGVGQTAKQLAEANK----LDS-K--KAEIAGAYHDLAKFLPKEQLKQI-----AKREKMPAHLLYPSPKLLHA 75 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHhC----cCH-H--HHHHHHHHHHHhccCCHHHHHHH-----HHHcCCCchhhcccccccHH
Confidence 457899999999988877543 333 3 36799999999985443322211 111110 111223499
Q ss_pred HHHHHHHhh
Q psy7867 199 AVAFKLLQN 207 (484)
Q Consensus 199 a~af~LL~~ 207 (484)
.++-.++++
T Consensus 76 ~vGa~ll~~ 84 (158)
T TIGR00488 76 YVGAYILKR 84 (158)
T ss_pred HHHHHHHHH
Confidence 999999875
No 44
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=49.25 E-value=8.1 Score=37.07 Aligned_cols=14 Identities=36% Similarity=0.589 Sum_probs=12.2
Q ss_pred HHHHHhhhccCCCC
Q psy7867 156 AALFAATIHDVDHP 169 (484)
Q Consensus 156 AlliAAl~HDvdHP 169 (484)
.+++|||.||+||-
T Consensus 45 elvvAALLHDIGhl 58 (179)
T TIGR03276 45 ELIVAAFLHDIGHL 58 (179)
T ss_pred HHHHHHHHHhcchh
Confidence 45899999999995
No 45
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=48.89 E-value=14 Score=35.13 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCCCCCCCcchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCCCCCchHHHHhhcChhhhhc
Q psy7867 108 NFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMY 187 (484)
Q Consensus 108 ~Fl~~v~~~Y~~~npYHN~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdHPG~nN~Fli~t~s~LA~lY 187 (484)
.|...-...| ..-|---..||..++-.. -+.+. --+++.|||.||+||== +++.--|
T Consensus 15 ~F~~~g~e~y-~ge~VTq~eHaLQ~AtlA---erdGa---------~~~lVaaALLHDiGhl~----------~~~g~~p 71 (186)
T COG4341 15 LFLRHGDEGY-SGEPVTQLEHALQCATLA---ERDGA---------DTALVAAALLHDIGHLY----------ADYGHTP 71 (186)
T ss_pred HHHHcccccc-ccCcchhhhhHHHHhHHH---HhcCC---------cHHHHHHHHHHhHHHHh----------hhcCCCc
Confidence 3566666677 455554555554333111 11110 13789999999999830 1111112
Q ss_pred CCCchhhhhhHHHHHHHHhhh
Q psy7867 188 NDESVLENHHLAVAFKLLQNE 208 (484)
Q Consensus 188 nD~SVLEnhH~a~af~LL~~~ 208 (484)
...++.-.||-..+..+|+.-
T Consensus 72 s~~~i~d~~hee~~~~vL~~~ 92 (186)
T COG4341 72 SAAGIDDPFHEEFATPVLRKL 92 (186)
T ss_pred cccccchhHHHHHhHHHHHHh
Confidence 234788888999998888863
No 46
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=48.69 E-value=18 Score=37.72 Aligned_cols=73 Identities=19% Similarity=0.299 Sum_probs=47.1
Q ss_pred hhcCCCHHHHHHHHHHHHHhcC---C-----CCCCCC-----cchhhhHHHHHHHHhhcccc--------cccCcHHHHH
Q psy7867 97 KTFLIPAKTFINFMMTLEDHYV---K-----DNPFHN-----STHAADVTQSTNVLLNSPAL--------EDVFTPLEIM 155 (484)
Q Consensus 97 ~~f~I~~~~L~~Fl~~v~~~Y~---~-----~npYHN-----~~HAaDV~Q~~~~lL~~~~l--------~~~lt~lE~l 155 (484)
+..+++.+.+.++...+-..|- + .+-.|. +.|+.+|+-....+-+..-+ .....+.-.+
T Consensus 26 ~~~~l~~~~f~~~yl~~l~r~A~~vQ~LPASe~hhha~~GGll~h~LEva~~Alrl~~~~~lp~~a~pEe~~~q~~~W~~ 105 (327)
T PF07514_consen 26 QNSGLSREQFERLYLPPLERYAEFVQLLPASESHHHAGPGGLLDHTLEVAAYALRLRQGYMLPPGATPEEQAAQEPAWRY 105 (327)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCCCCcHHHHHHHHHHHHHHHhcCeecCCCCChhhHHHHHhhhHH
Confidence 3456888888877766666662 1 333444 36778887766665442222 2334566668
Q ss_pred HHHHHhhhccCCCC
Q psy7867 156 AALFAATIHDVDHP 169 (484)
Q Consensus 156 AlliAAl~HDvdHP 169 (484)
|+++||||||+|=|
T Consensus 106 avf~AALlhdlgk~ 119 (327)
T PF07514_consen 106 AVFYAALLHDLGKP 119 (327)
T ss_pred HHHHHHHHhccCcc
Confidence 99999999999864
No 47
>PRK00106 hypothetical protein; Provisional
Probab=41.43 E-value=31 Score=38.59 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCcchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCCCCCchHHHHhh
Q psy7867 100 LIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINS 179 (484)
Q Consensus 100 ~I~~~~L~~Fl~~v~~~Y~~~npYHN~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdHPG~nN~Fli~t 179 (484)
++++ .+..+|..+...+ ...=..|.|...|+.++..|-...++ + .--+.+|+|.||+|-- +..
T Consensus 329 ~~~~-e~~~~lg~l~~r~--sy~qnl~~HSv~VA~lA~~lA~~lgl----d---~e~a~~AGLLHDIGK~-v~~------ 391 (535)
T PRK00106 329 NLHP-DLIKIMGRLQFRT--SYGQNVLRHSVEVGKLAGILAGELGE----N---VALARRAGFLHDMGKA-IDR------ 391 (535)
T ss_pred CCCH-HHHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHHHHHHhCC----C---HHHHHHHHHHHhccCc-cCc------
Confidence 4444 4677887776554 12223789999999999888776542 2 3457889999999986 321
Q ss_pred cChhhhhcCCCchhhhhhHHHHHHHHhhh
Q psy7867 180 SSELALMYNDESVLENHHLAVAFKLLQNE 208 (484)
Q Consensus 180 ~s~LA~lYnD~SVLEnhH~a~af~LL~~~ 208 (484)
.+ +.-|+-++..+++..
T Consensus 392 -----------e~-~g~Ha~iGa~ll~~~ 408 (535)
T PRK00106 392 -----------EV-EGSHVEIGMEFARKY 408 (535)
T ss_pred -----------cc-cCChHHHHHHHHHHc
Confidence 11 225999999999764
No 48
>PRK12705 hypothetical protein; Provisional
Probab=39.70 E-value=64 Score=35.87 Aligned_cols=77 Identities=13% Similarity=0.213 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-CcchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCCCCCchHHHHhhcCh
Q psy7867 104 KTFINFMMTLEDHYVKDNPFH-NSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSE 182 (484)
Q Consensus 104 ~~L~~Fl~~v~~~Y~~~npYH-N~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdHPG~nN~Fli~t~s~ 182 (484)
..+..++..+ .| +...-. -+.|+..|+..+..+....+ +++-. +..|||.||+|..-.
T Consensus 305 ~~li~~Lg~L--~~-R~sygqnvl~HSl~VA~lA~~LA~~lG----ld~d~---a~~AGLLHDIGK~ie----------- 363 (508)
T PRK12705 305 PGLVRLLGRL--YF-RTSYGQNVLSHSLEVAHLAGIIAAEIG----LDPAL---AKRAGLLHDIGKSID----------- 363 (508)
T ss_pred HHHHHHHHHH--hh-cccCCchHHHHHHHHHHHHHHHHHHcC----cCHHH---HHHHHHHHHcCCcch-----------
Confidence 3466666655 35 222222 47899999999999987654 34433 346999999998520
Q ss_pred hhhhcCCCchhhhhhHHHHHHHHhhhc
Q psy7867 183 LALMYNDESVLENHHLAVAFKLLQNEG 209 (484)
Q Consensus 183 LA~lYnD~SVLEnhH~a~af~LL~~~~ 209 (484)
.. .+..|...+..++++.+
T Consensus 364 -------~e-~~~~H~~iGaeLlkk~~ 382 (508)
T PRK12705 364 -------RE-SDGNHVEIGAELARKFN 382 (508)
T ss_pred -------hh-hcccHHHHHHHHHHhcC
Confidence 00 24568999999998754
No 49
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=35.91 E-value=27 Score=31.93 Aligned_cols=43 Identities=23% Similarity=0.215 Sum_probs=25.8
Q ss_pred chhhhHHHHHHHHhhc-ccccccCcHHHHHHHHHHhhhccCCCC
Q psy7867 127 THAADVTQSTNVLLNS-PALEDVFTPLEIMAALFAATIHDVDHP 169 (484)
Q Consensus 127 ~HAaDV~Q~~~~lL~~-~~l~~~lt~lE~lAlliAAl~HDvdHP 169 (484)
.|..||+..+..++.. +.+...+..-..-.+.+||++||+|=-
T Consensus 3 ~H~~~v~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~lHDiGK~ 46 (177)
T TIGR01596 3 EHLLDVAAVAEKLKNLDIVIADLIGKLLRELLDLLALLHDIGKI 46 (177)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHhhHHHHHHHHHHHHccCccC
Confidence 5888998887665411 011112221224467889999999864
No 50
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=33.76 E-value=1.1e+02 Score=26.58 Aligned_cols=36 Identities=28% Similarity=0.506 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh
Q psy7867 381 IDYIVHPLWETWADLVHPDAQEILDMLEENRDWYQNY 417 (484)
Q Consensus 381 id~iv~PLf~~la~l~~p~~~~ll~~l~~Nr~~w~~~ 417 (484)
-|.-|.+||..+..+ +|.+-..+...++-|.+|+..
T Consensus 30 nDsaVqsLF~~lt~m-H~~LL~~i~~~ee~R~~~E~l 65 (96)
T PF12210_consen 30 NDSAVQSLFQTLTAM-HPQLLKYIQEQEEKRVYYEGL 65 (96)
T ss_dssp G-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 366789999999976 888888888888889999877
No 51
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=32.33 E-value=69 Score=35.28 Aligned_cols=61 Identities=11% Similarity=0.149 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCCC
Q psy7867 104 KTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHP 169 (484)
Q Consensus 104 ~~L~~Fl~~v~~~Y~~~npYHN~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdHP 169 (484)
+.+...+..+...|+ -+..||..|...+..|.....-...+.+-+...+-.||+.||+|.-
T Consensus 307 d~~~~s~~~l~~ry~-----~d~~ha~~v~~~a~~Lf~~l~~~~~l~~~~~~LL~~Aa~LhdiG~~ 367 (496)
T PRK11031 307 DIRSRTLRNIQRRFQ-----IDTEQAQRVAKLADNFLQQVENEWHLEPRSRELLISACQLHEIGLS 367 (496)
T ss_pred chHHHHHHHHHHHcC-----cCHHHHHHHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHhcCCc
Confidence 334556888888883 2457999999888877764332334688999999999999999854
No 52
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=29.76 E-value=49 Score=35.83 Aligned_cols=16 Identities=6% Similarity=-0.218 Sum_probs=13.6
Q ss_pred HHHHHhhhccCCCCCC
Q psy7867 156 AALFAATIHDVDHPGL 171 (484)
Q Consensus 156 AlliAAl~HDvdHPG~ 171 (484)
.+-+||||||+|-|.+
T Consensus 248 ~lR~AaLlHDiGK~~t 263 (417)
T PRK13298 248 DIRFSYLCQFLGSMIP 263 (417)
T ss_pred HHHHHHHHhhhcCCCC
Confidence 4789999999999853
No 53
>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568. This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.
Probab=28.38 E-value=1.9e+02 Score=23.41 Aligned_cols=16 Identities=13% Similarity=0.345 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhhcc
Q psy7867 221 KQTLRKMVIDMVLSTD 236 (484)
Q Consensus 221 ~~~~Rk~VI~mILATD 236 (484)
|..||+.|.+||.+-+
T Consensus 11 y~DFr~SM~EMI~~~~ 26 (66)
T TIGR01568 11 YEDFRRSMEEMIEERE 26 (66)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4444555555554443
No 54
>PRK10854 exopolyphosphatase; Provisional
Probab=23.39 E-value=1.3e+02 Score=33.22 Aligned_cols=61 Identities=20% Similarity=0.164 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcchhhhHHHHHHHHhhccc-cc-ccCcHHHHHHHHHHhhhccCCC
Q psy7867 103 AKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPA-LE-DVFTPLEIMAALFAATIHDVDH 168 (484)
Q Consensus 103 ~~~L~~Fl~~v~~~Y~~~npYHN~~HAaDV~Q~~~~lL~~~~-l~-~~lt~lE~lAlliAAl~HDvdH 168 (484)
.+.+..-+..+...|+ - +..||.-|+.++-.|..... +. ..+++-+...+-.||+.||+|.
T Consensus 312 ~d~~~~s~~~la~ry~-~----d~~ha~~V~~~a~~LFd~l~~~h~~~~~~~~~~LL~~Aa~LhdiG~ 374 (513)
T PRK10854 312 QDIRSRTAKSLANHYN-I----DREQARRVLETTMQLYEQWREQNPKLAHPQLEALLKWAAMLHEVGL 374 (513)
T ss_pred ccHHHHHHHHHHHHcC-C----CHHHHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHHHHHhcCC
Confidence 3455567777888883 2 45688888888877765422 22 2247888889999999999984
No 55
>COG3910 Predicted ATPase [General function prediction only]
Probab=22.28 E-value=38 Score=33.34 Aligned_cols=86 Identities=21% Similarity=0.390 Sum_probs=61.5
Q ss_pred CHHHHHHHHHH---HH--HhcCCCCCCCCcchhhhHHHHHHH--------HhhcccccccCcHHHHHHHHHHhhhccCCC
Q psy7867 102 PAKTFINFMMT---LE--DHYVKDNPFHNSTHAADVTQSTNV--------LLNSPALEDVFTPLEIMAALFAATIHDVDH 168 (484)
Q Consensus 102 ~~~~L~~Fl~~---v~--~~Y~~~npYHN~~HAaDV~Q~~~~--------lL~~~~l~~~lt~lE~lAlliAAl~HDvdH 168 (484)
-.+++.+|... +. .+| .++..|-+-|+=.|+..++- +|..| ..-|+|.-.+.+ .|..||+.-
T Consensus 102 RAEs~yn~as~~De~~~e~~~-~~~sLh~~SHGEsf~~i~~~rf~~~GiYiLDEP--Ea~LSp~RQlel--la~l~~la~ 176 (233)
T COG3910 102 RAESFYNVASYLDEADGEANY-GGRSLHHMSHGESFLAIFHNRFNGQGIYILDEP--EAALSPSRQLEL--LAILRDLAD 176 (233)
T ss_pred ehhHHHHHHHHHHhhhhhccc-CCcchhhhccchHHHHHHHHHhccCceEEecCc--cccCCHHHHHHH--HHHHHHHHh
Confidence 34455555443 33 567 68899999999998888763 33333 455788776654 578999999
Q ss_pred CCCchHHHHhhcChhhhhcCCCchhh
Q psy7867 169 PGLTNQFLINSSSELALMYNDESVLE 194 (484)
Q Consensus 169 PG~nN~Fli~t~s~LA~lYnD~SVLE 194 (484)
-| -++-|.|.||+-.-|...-++|
T Consensus 177 sG--aQ~IiATHSPiLlAiP~A~I~~ 200 (233)
T COG3910 177 SG--AQIIIATHSPILLAIPGAEIYE 200 (233)
T ss_pred cC--CeEEEEecChhheeCCCcEEEE
Confidence 99 7999999999977777554444
Done!