RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7867
(484 letters)
>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D;
PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo
sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A*
1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A*
1tbb_A* 1tb7_A* 3sl5_A* 3sl4_A* 2fm5_A* 3sl3_A* 2fm0_A*
3sl6_A* 3sl8_A* 1oyn_A* ...
Length = 349
Score = 399 bits (1028), Expect = e-138
Identities = 220/386 (56%), Positives = 261/386 (67%), Gaps = 77/386 (19%)
Query: 66 THTNSFTGEKLPKHGVETASEEELG---------------------------------NN 92
H + + +P+ T E+ L
Sbjct: 5 HHHHHHSSGLVPRGSHMTEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQE 64
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF IP T I ++MTLEDHY D +HN+ HAADV QST+VLL++PALE VFT L
Sbjct: 65 RDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDL 124
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FA+ IHDVDHPG++NQFLIN++SELALMYND SVLENHHLAV FKLLQ E CDI
Sbjct: 125 EILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDI 184
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
NL KKQ+Q+LRKMVID+VL+TD
Sbjct: 185 FQNLTKKQRQSLRKMVIDIVLATD------------------------------------ 208
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
MSKHM+LLADLKTMVETKKV SGVLLLDNY+DRIQVL+N+VHCADLSNPTK
Sbjct: 209 --------MSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTK 260
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
PL LYR+W D +MEEFF+QGD+ERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 261 PLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 320
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLVHPDAQ+ILD LE+NR+WYQ+ I
Sbjct: 321 ADLVHPDAQDILDTLEDNREWYQSTI 346
>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D;
PDE4D, UCR2, alternative splicing, cytoplasm,
cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo
sapiens} PDB: 3g45_A*
Length = 421
Score = 395 bits (1016), Expect = e-135
Identities = 244/454 (53%), Positives = 294/454 (64%), Gaps = 91/454 (20%)
Query: 1 MLNKELSHFSE---SNKQQELDLPALRIEDSQGSDPRSGGASSKKKDRGGPPGRTVPMSH 57
MLN+EL+H SE S Q + ++ + A + PMS
Sbjct: 14 MLNRELTHLSEMSRSGNQVSEFISNTFLDKQHEVEIPKVTAEEAPQ----------PMSQ 63
Query: 58 ISGVKRPLTHTNSFTGEKLPKHGVETASEEELG--------------------------- 90
ISGVK+ L H++S T +P+ GV+T E+ L
Sbjct: 64 ISGVKK-LMHSSSLTNSSIPRFGVKTEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTV 122
Query: 91 ------NNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPA 144
RDLLKTF IP T I ++MTLEDHY D +HN+ HAADV QST+VLL++PA
Sbjct: 123 IMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPA 182
Query: 145 LEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKL 204
LE VFT LEI+AA+FA+ IHDVDHPG++NQFLIN++SELALMYND SVLENHHLAV FKL
Sbjct: 183 LEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKL 242
Query: 205 LQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQ 264
LQ E CDI NL KKQ+Q+LRKMVID+VL+TD
Sbjct: 243 LQEENCDIFQNLTKKQRQSLRKMVIDIVLATD---------------------------- 274
Query: 265 KQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHC 324
MSKHM+LLADLKTMVETKKV SGVLLLDNY+DRIQVL+N+VHC
Sbjct: 275 ----------------MSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHC 318
Query: 325 ADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYI 384
ADLSNPTKPL LYR+W D +MEEFF+QGD+ERE ++ISPMCD+ +A++EKSQVGFIDYI
Sbjct: 319 ADLSNPTKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYI 378
Query: 385 VHPLWETWADLVHPDAQEILDMLEENRDWYQNYI 418
VHPLWETWADLVHPDAQ+ILD LE+NR+WYQ+ I
Sbjct: 379 VHPLWETWADLVHPDAQDILDTLEDNREWYQSTI 412
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase;
1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A*
1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A*
1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A*
1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ...
Length = 377
Score = 389 bits (1002), Expect = e-133
Identities = 222/328 (67%), Positives = 250/328 (76%), Gaps = 44/328 (13%)
Query: 91 NNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFT 150
RDLLKTF I + TFI +MMTLEDHY D +HNS HAADV QST+VLL++PAL+ VFT
Sbjct: 50 QERDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFT 109
Query: 151 PLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGC 210
LEI+AA+FAA IHDVDHPG++NQFLIN++SELALMYNDESVLENHHLAV FKLLQ E C
Sbjct: 110 DLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEEHC 169
Query: 211 DILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRK 270
DI NL KKQ+QTLRKMVIDMVL+TD
Sbjct: 170 DIFMNLTKKQRQTLRKMVIDMVLATD---------------------------------- 195
Query: 271 MVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNP 330
MSKHMSLLADLKTMVETKKV SGVLLLDNYTDRIQVL N+VHCADLSNP
Sbjct: 196 ----------MSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNP 245
Query: 331 TKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWE 390
TK L LYR+W D +MEEFFQQGDKERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWE
Sbjct: 246 TKSLELYRQWTDRIMEEFFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWE 305
Query: 391 TWADLVHPDAQEILDMLEENRDWYQNYI 418
TWADLV PDAQ+ILD LE+NR+WYQ+ I
Sbjct: 306 TWADLVQPDAQDILDTLEDNRNWYQSMI 333
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase;
HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB:
1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A*
3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A*
2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ...
Length = 347
Score = 367 bits (943), Expect = e-125
Identities = 95/327 (29%), Positives = 160/327 (48%), Gaps = 53/327 (16%)
Query: 91 NNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFT 150
+ +L++ F + + ++++++ +Y K+ +HN HA + Q L + +++ T
Sbjct: 68 TDLNLVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLT 127
Query: 151 PLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGC 210
LEI+A L AA HD+DHPG++NQFLIN++SELALMYNDESVLE+HH
Sbjct: 128 DLEILALLIAALSHDLDHPGVSNQFLINTNSELALMYNDESVLEHHH------------- 174
Query: 211 DILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRK 270
+L + G IL L+ ++ +T K
Sbjct: 175 -------------------------------FDQCLMILNSPGNQILSGLSIEEYKTTLK 203
Query: 271 MVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNP 330
++ +L+TD++ ++ + ++ + L++ + L L+ DLS
Sbjct: 204 IIKQAILATDLALYIKRRGEFFELIRKNQFN------LEDPHQKELFLAMLMTACDLSAI 257
Query: 331 TKPLPLYRKWVDLLMEEFFQQGDKER-ELNLDISPMCDRLSAT-IEKSQVGFIDYIVHPL 388
TKP P+ ++ +L+ EFF QGD+ER ELN++ + + +R I QVGFID I L
Sbjct: 258 TKPWPIQQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQL 317
Query: 389 WETWADLVHPDAQEILDMLEENRDWYQ 415
+E + D +LD +NR +Q
Sbjct: 318 YEALTHV-SEDCFPLLDGCRKNRQKWQ 343
>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic
phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A
{Homo sapiens} PDB: 3g3n_A*
Length = 353
Score = 364 bits (936), Expect = e-124
Identities = 93/329 (28%), Positives = 161/329 (48%), Gaps = 53/329 (16%)
Query: 91 NNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFT 150
+ L++ F + F++ +++ Y NP+HN+ HAADVTQ+ + L P L + T
Sbjct: 50 SLHGLIEYFHLDMMKLRRFLVMIQEDYHSQNPYHNAVHAADVTQAMHCYLKEPKLANSVT 109
Query: 151 PLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGC 210
P +I+ +L AA HD+DHPG+ FLI ++ LA +Y + SVLENHH A LL+
Sbjct: 110 PWDILLSLIAAATHDLDHPGVNQPFLIKTNHYLATLYKNTSVLENHHWRSAVGLLRE--- 166
Query: 211 DILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRK 270
+ +L + +Q +
Sbjct: 167 -------------------------------------------SGLFSHLPLESRQQMET 183
Query: 271 MVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNP 330
+ ++L+TD+S+ L+ ++ ++ G L L++ R VL+ + CAD+ NP
Sbjct: 184 QIGALILATDISRQNEYLSLFRSHLD------RGDLCLEDTRHRHLVLQMALKCADICNP 237
Query: 331 TKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWE 390
+ L ++W + + EEFF QGD E++ +L +SP+CDR + +I Q+GF+ Y+V PL+
Sbjct: 238 CRTWELSKQWSEKVTEEFFHQGDIEKKYHLGVSPLCDRHTESIANIQIGFMTYLVEPLFT 297
Query: 391 TWADLVHPD-AQEILDMLEENRDWYQNYI 418
WA + +Q +L + N+ ++
Sbjct: 298 EWARFSNTRLSQTMLGHVGLNKASWKGLQ 326
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase
1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens}
SCOP: a.211.1.2
Length = 365
Score = 362 bits (930), Expect = e-123
Identities = 117/364 (32%), Positives = 179/364 (49%), Gaps = 60/364 (16%)
Query: 91 NNRDLLKTFLIPAKTFINFMMTLEDHYVK-DNPFHNSTHAADVTQSTNVLLNSPALEDVF 149
+L+ F IP ++F+ LE Y K NP+HN HAADVTQ+ + L +
Sbjct: 48 TRHNLISRFKIPTVFLMSFLDALETGYGKYKNPYHNQIHAADVTQTVHCFLLRTGMVHCL 107
Query: 150 TPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEG 209
+ +E++A +FAA IHD +H G TN F I + SE A++YND SVLENHH++ F+L+Q++
Sbjct: 108 SEIELLAIIFAAAIHDYEHTGTTNSFHIQTKSECAIVYNDRSVLENHHISSVFRLMQDDE 167
Query: 210 CDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLR 269
+I NL K + LR +VI+MVL+TD
Sbjct: 168 MNIFINLTKDEFVELRALVIEMVLATD--------------------------------- 194
Query: 270 KMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSN 329
MS H + +KT ++ D+ + L L+H AD+S+
Sbjct: 195 -----------MSCHFQQVKTMKTALQQ-----------LERIDKPKALSLLLHAADISH 232
Query: 330 PTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLW 389
PTK ++ +W LMEEFF+QGDKE EL L SP+CDR S + +SQ+GFID+IV P +
Sbjct: 233 PTKQWLVHSRWTKALMEEFFRQGDKEAELGLPFSPLCDRTSTLVAQSQIGFIDFIVEPTF 292
Query: 390 ETWADLVHPDAQEILDMLEENRDWYQNYIVHPLWETWADLVHPDAQEI----LDMLEENR 445
D+ Q + D ++++ P + +PD + ++EN+
Sbjct: 293 SVLTDVAEKSVQPLADEDSKSKNQPSFQWRQPSLDVEVGDPNPDVVSFRSTWVKRIQENK 352
Query: 446 DWYQ 449
++
Sbjct: 353 QKWK 356
>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic
phosphodiesterase 8A...; phosphodiesterase 8A PDE8A
inhibitor selectivity; 1.90A {Homo sapiens} PDB: 3ecn_A*
Length = 338
Score = 361 bits (927), Expect = e-122
Identities = 103/339 (30%), Positives = 168/339 (49%), Gaps = 57/339 (16%)
Query: 91 NNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFT 150
+ + T +++ +E +Y NP+HNSTH+ADV +T L+ +++
Sbjct: 42 ARFGICEFLHCSESTLRSWLQIIEANYHSSNPYHNSTHSADVLHATAYFLSKERIKETLD 101
Query: 151 PLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGC 210
P++ +AAL AATIHDVDHPG TN FL N+ SELA++YND +VLE+HH A+AF+L +
Sbjct: 102 PIDEVAALIAATIHDVDHPGRTNSFLCNAGSELAILYNDTAVLESHHAALAFQLTTGD-- 159
Query: 211 DILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRK 270
+ C+I N+ + +TLR+
Sbjct: 160 -----------------------------------------DKCNIFKNMERNDYRTLRQ 178
Query: 271 MVIDMVLSTDMSKHMSLLADLKTMV-----------ETKKVAGSGVLLLDNYTDRIQVLE 319
+IDMVL+T+M+KH + + ET K +L +R +
Sbjct: 179 GIIDMVLATEMTKHFEHVNKFVNSINKPLATLEENGETDKNQEVINTMLRTPENRTLIKR 238
Query: 320 NLVHCADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLD-ISPMCDRLSATIEKSQV 378
L+ CAD+SNP +PL +W + EE+F Q D+E++ L + P+ DR + +I KSQ+
Sbjct: 239 MLIKCADVSNPCRPLQYCIEWAARISEEYFSQTDEEKQQGLPVVMPVFDRNTCSIPKSQI 298
Query: 379 GFIDYIVHPLWETWADLVHPDAQEILDMLEENRDWYQNY 417
FIDY + +++ W D +++ L+ N +++
Sbjct: 299 SFIDYFITDMFDAWDAF--VDLPDLMQHLDNNFKYWKGL 335
>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A;
phophodiestrase, enzyme mechanism, hydrolase, manganes
binding, phosphoprotein; HET: PCG IBM; 2.10A {Homo
sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A*
3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A*
3n3z_A*
Length = 329
Score = 356 bits (914), Expect = e-121
Identities = 93/325 (28%), Positives = 156/325 (48%), Gaps = 53/325 (16%)
Query: 91 NNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFT 150
++ L++ F I T ++ + D+Y ++NPFHN H V Q ++ +L++ F+
Sbjct: 43 HDLGLVRDFSINPVTLRRWLFCVHDNY-RNNPFHNFRHCFCVAQMMYSMVWLCSLQEKFS 101
Query: 151 PLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGC 210
+I+ + AA HD+DHPG N + IN+ +ELA+ YND S LENHH AVAF++L C
Sbjct: 102 QTDILILMTAAICHDLDHPGYNNTYQINARTELAVRYNDISPLENHHCAVAFQILAEPEC 161
Query: 211 DILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRK 270
+I N+ + +R+ +I ++L+TD
Sbjct: 162 NIFSNIPPDGFKQIRQGMITLILATD---------------------------------- 187
Query: 271 MVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNP 330
M++H ++ K +E N + L+ C D+SN
Sbjct: 188 ----------MARHAEIMDSFKEKMENFD--------YSNEEHMTLLKMILIKCCDISNE 229
Query: 331 TKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWE 390
+P+ + WVD L+EE+F Q D+E+ L ++P DR T +Q+GFI +++ P++E
Sbjct: 230 VRPMEVAEPWVDCLLEEYFMQSDREKSEGLPVAPFMDRDKVTKATAQIGFIKFVLIPMFE 289
Query: 391 TWADLVHPDAQEILDMLEENRDWYQ 415
T L + +L L E+RD Y+
Sbjct: 290 TVTKLFPMVEEIMLQPLWESRDRYE 314
>3v93_A Cyclic nucleotide specific phosphodiesterase; parasite,
phosphodiesterases,, hydrolase; 2.00A {Trypanosoma
cruzi} PDB: 3v94_A*
Length = 345
Score = 355 bits (913), Expect = e-120
Identities = 84/329 (25%), Positives = 143/329 (43%), Gaps = 56/329 (17%)
Query: 88 ELGNNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPAL-E 146
+ D + A+ + + +E++Y + NP+HN+ HAADV Q T L+++
Sbjct: 65 HVALAWDFFASQ-EEAQKWAFLVAAVENNY-RPNPYHNAIHAADVLQGTFSLVSAAKPLM 122
Query: 147 DVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQ 206
+ TPLE AA FAA HDV HPG TN FL ++ ++ + LE H A AF+LL
Sbjct: 123 EHLTPLECKAAAFAALTHDVCHPGRTNAFLAAVQDPVSFKFSGKGTLEQLHTATAFELLN 182
Query: 207 NEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQ 266
D +++ + +V ++ T
Sbjct: 183 VTEFDFTSSMDNASFLEFKNIVSHLIGHT------------------------------- 211
Query: 267 TLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCAD 326
DMS H +A + +G DR++ L L+H AD
Sbjct: 212 -------------DMSLHSETVAKHGAKLS------AGGFDCTCKEDRLEALSLLLHAAD 252
Query: 327 LSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVH 386
+ ++ + + RKW+ ++++EF Q + ER L ++P + +++EKSQ+ F+D+ V
Sbjct: 253 IGASSRGVAIARKWL-VILQEFADQAEDERRRGLPVTPGFET-PSSVEKSQIPFLDFFVI 310
Query: 387 PLWETWADLVHPDAQEILDMLEENRDWYQ 415
P ++ L P +E L L + R+ Y
Sbjct: 311 PTFDLLHQLF-PSIEEPLHNLRKLRELYA 338
>3qi3_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; mutation,
glutamine switch, hydrolase-hydrolase inhibitor CO; HET:
PDB; 2.30A {Homo sapiens} PDB: 3qi4_A*
Length = 533
Score = 355 bits (913), Expect = e-118
Identities = 92/325 (28%), Positives = 156/325 (48%), Gaps = 53/325 (16%)
Query: 91 NNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFT 150
++ L++ F I T ++ + D+Y ++NPFHN H V Q ++ +L++ F+
Sbjct: 220 HDLGLVRDFSINPVTLRRWLFCVHDNY-RNNPFHNFRHCFCVAQMMYSMVWLCSLQEKFS 278
Query: 151 PLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGC 210
+I+ + AA HD+DHPG N + IN+ +ELA+ YND S LENHH AVAF++L C
Sbjct: 279 QTDILILMTAAICHDLDHPGYNNTYQINARTELAVRYNDISPLENHHCAVAFQILAEPEC 338
Query: 211 DILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRK 270
+I N+ + +R+ +I ++L+TD
Sbjct: 339 NIFSNIPPDGFKQIRQGMITLILATD---------------------------------- 364
Query: 271 MVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNP 330
M++H ++ K +E N + L+ C D+SN
Sbjct: 365 ----------MARHAEIMDSFKEKMENFD--------YSNEEHMTLLKMILIKCCDISNE 406
Query: 331 TKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWE 390
+P+ + WVD L+EE+F Q D+E+ L ++P DR T +++GFI +++ P++E
Sbjct: 407 VRPMEVAEPWVDCLLEEYFMQSDREKSEGLPVAPFMDRDKVTKATAEIGFIKFVLIPMFE 466
Query: 391 TWADLVHPDAQEILDMLEENRDWYQ 415
T L + +L L E+RD Y+
Sbjct: 467 TVTKLFPMVEEIMLQPLWESRDRYE 491
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding,
all-alpha-helical, alternative splicing, hydrolase,
membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens}
PDB: 3itm_A* 1z1l_A
Length = 345
Score = 347 bits (893), Expect = e-117
Identities = 85/326 (26%), Positives = 143/326 (43%), Gaps = 54/326 (16%)
Query: 91 NNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFT 150
+ + + + I T F + ++ Y +D P+HN HA V+ +L + L +
Sbjct: 50 QDMNFINNYKIDCPTLARFCLMVKKGY-RDPPYHNWMHAFSVSHFCYLLYKNLELTNYLE 108
Query: 151 PLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDE-SVLENHHLAVAFKLLQNEG 209
+EI A + HD+DH G N F + S S LA +Y+ E SV+E HH A A +L G
Sbjct: 109 DIEIFALFISCMCHDLDHRGTNNSFQVASKSVLAALYSSEGSVMERHHFAQAIAILNTHG 168
Query: 210 CDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLR 269
C+I + ++K Q + ++ D++L+TD
Sbjct: 169 CNIFDHFSRKDYQRMLDLMRDIILATD--------------------------------- 195
Query: 270 KMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSN 329
++ H+ + DL+ M E +N +L L+ DLS+
Sbjct: 196 -----------LAHHLRIFKDLQKMAEVG-------YDRNNKQHHRLLLCLLMTSCDLSD 237
Query: 330 PTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLW 389
TK RK +L+ +EFF QGD E+ + M DR A I + Q+ F+++I P++
Sbjct: 238 QTKGWKTTRKIAELIYKEFFSQGDLEKAMGNRPMEMMDREKAYIPELQISFMEHIAMPIY 297
Query: 390 ETWADLVHPDAQEILDMLEENRDWYQ 415
+ DL P A E+ + + NR+ +
Sbjct: 298 KLLQDL-FPKAAELYERVASNREHWT 322
>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor
selectivity, CAMP phosphodiesterase, hydrolase; HET:
IBM; 1.50A {Leishmania major}
Length = 359
Score = 345 bits (886), Expect = e-116
Identities = 86/332 (25%), Positives = 144/332 (43%), Gaps = 56/332 (16%)
Query: 91 NNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFT 150
N L + F +T +NF++ Y + P+HN H DV Q+ + L + ++ T
Sbjct: 68 WNSGLPEKFGCREQTLLNFILQCRRRY-RRVPYHNFYHVVDVCQTLHTYLYTGKASELLT 126
Query: 151 PLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYN---DESVLENHHLAVAFKLLQN 207
LE L A +HD+DH G+ N F + + S L ++ + + SVLE HH ++A ++L +
Sbjct: 127 ELECYVLLVTALVHDLDHMGVNNSFYLKTDSPLGILSSASGNNSVLEVHHCSLAIEILSD 186
Query: 208 EGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQT 267
D+ L+ + + +ID VL+TD
Sbjct: 187 PAADVFEGLSGQDVAYAYRALIDCVLATD------------------------------- 215
Query: 268 LRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADL 327
M+KH L+ + + DN T R V+E L+ D+
Sbjct: 216 -------------MAKHADALSRFTELATSG-------FEKDNDTHRRLVMETLIKAGDV 255
Query: 328 SNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDR-LSATIEKSQVGFIDYIVH 386
SN TKP R W + EEF++QGD E+E +++ PM DR + + + Q+GFID++
Sbjct: 256 SNVTKPFETSRMWAMAVTEEFYRQGDMEKEKGVEVLPMFDRSKNNELARGQIGFIDFVAG 315
Query: 387 PLWETWADLVHPDAQEILDMLEENRDWYQNYI 418
+ + Q +D + NR +Q +
Sbjct: 316 KFFRDIVGNLFHGMQWCVDTVNSNRAKWQEIL 347
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A;
PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A
{Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A*
3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A
2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A*
2ovv_A* 2ovy_A* ...
Length = 331
Score = 338 bits (868), Expect = e-114
Identities = 68/324 (20%), Positives = 133/324 (41%), Gaps = 56/324 (17%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
T + F+M+++ +Y + P+HN HA V +L + +FT L
Sbjct: 50 HRSCGTSCFELEKLCRFIMSVKKNY-RRVPYHNWKHAVTVAHCMYAILQNN--HTLFTDL 106
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
E L A HD+DH G +N +L LA +Y+ S +E HH + +LQ EG +I
Sbjct: 107 ERKGLLIACLCHDLDHRGFSNSYLQKFDHPLAALYST-STMEQHHFSQTVSILQLEGHNI 165
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
L+ + + + +++ +++TD
Sbjct: 166 FSTLSSSEYEQVLEIIRKAIIATD------------------------------------ 189
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
++ + L+ M + +G L L+N + R +V+ ++ L + TK
Sbjct: 190 --------LALYFGNRKQLEEMYQ------TGSLNLNNQSHRDRVIGLMMTACALCSVTK 235
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSAT-IEKSQVGFIDYIVHPLWET 391
P+ + + + EF+ +GD+ ++L + PM DR + + Q+GF + + P + T
Sbjct: 236 LWPVTKLTANDIYAEFWAEGDEMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTT 295
Query: 392 WADLVHPDAQEILDMLEENRDWYQ 415
+ P + +L +N ++
Sbjct: 296 LTQI-LPPTEPLLKACRDNLSQWE 318
>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A;
PDE 10A, PDE10 inhibitors, allosteric enzyme,
alternative splicing; HET: PF9; 1.53A {Rattus
norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A*
Length = 380
Score = 334 bits (857), Expect = e-111
Identities = 70/327 (21%), Positives = 135/327 (41%), Gaps = 56/327 (17%)
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
T + F+M+++ +Y + P+HN HA V +L + +FT L
Sbjct: 81 HRSCGTSCFELEKLCRFIMSVKKNY-RRVPYHNWKHAVTVAHCMYAILQNN--NGLFTDL 137
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
E L A HD+DH G +N +L LA +Y+ S +E HH + +LQ EG +I
Sbjct: 138 ERKGLLIACLCHDLDHRGFSNSYLQKFDHPLAALYST-STMEQHHFSQTVSILQLEGHNI 196
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
L+ + + + +++ +++TD
Sbjct: 197 FSTLSSSEYEQVLEIIRKAIIATD------------------------------------ 220
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
++ + L+ M + +G L L N + R +V+ ++ DL + TK
Sbjct: 221 --------LALYFGNRKQLEEMYQ------TGSLNLHNQSHRDRVIGLMMTACDLCSVTK 266
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSAT-IEKSQVGFIDYIVHPLWET 391
P+ + + + EF+ +GD+ ++L + PM DR + + Q+GF + + P + T
Sbjct: 267 LWPVTKLTANDIYAEFWAEGDEMKKLGIQPIPMMDRDKRDEVPQGQLGFYNAVAIPCYTT 326
Query: 392 WADLVHPDAQEILDMLEENRDWYQNYI 418
+ P + +L +N + ++ I
Sbjct: 327 LTQI-LPPTEPLLKACRDNLNQWEKVI 352
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B
phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo
sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Length = 420
Score = 334 bits (857), Expect = e-111
Identities = 101/369 (27%), Positives = 150/369 (40%), Gaps = 92/369 (24%)
Query: 91 NNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSP------- 143
+ LL+ F IP + F+N+ LE+ Y +D P+HN HA DV + L P
Sbjct: 52 QDTGLLEIFKIPTQQFMNYFRALENGY-RDIPYHNRIHATDVLHAVWYLTTRPVPGLQQI 110
Query: 144 -------------------------------------ALEDVFTPLEIMAALFAATIHDV 166
L LE+MA AA +HD
Sbjct: 111 HNGCGTGNETDSDGRINHGRIAYISSKSCSNPDESYGCLSSNIPALELMALYVAAAMHDY 170
Query: 167 DHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRK 226
DHPG TN FL+ +++ A++YND SVLENHH A A+ L
Sbjct: 171 DHPGRTNAFLVATNAPQAVLYNDRSVLENHHAASAWNLY--------------------- 209
Query: 227 MVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMS 286
L + L +L+ + + R +VI+ +L+TD+ KH
Sbjct: 210 ----------------------LSRPEYNFLLHLDHVEFKRFRFLVIEAILATDLKKHFD 247
Query: 287 LLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLME 346
LA+ S + N DR+ V + + AD++ P K L+ KW + ++
Sbjct: 248 FLAEFNAKANDVN---SNGIEWSNENDRLLVCQVCIKLADINGPAKVRDLHLKWTEGIVN 304
Query: 347 EFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDM 406
EF++QGD+E L L ISP DR S + K Q FI +IV PL ++ + L+
Sbjct: 305 EFYEQGDEEANLGLPISPFMDRSSPQLAKLQESFITHIVGPLCNSYDAA-GLLPGQWLEA 363
Query: 407 LEENRDWYQ 415
E+N
Sbjct: 364 EEDNDTESG 372
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains,
allosteric regulation hydrolase, membrane; 3.02A {Homo
sapiens}
Length = 691
Score = 330 bits (846), Expect = e-106
Identities = 85/326 (26%), Positives = 143/326 (43%), Gaps = 54/326 (16%)
Query: 91 NNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFT 150
+ + + + I T F + ++ Y +D P+HN HA V+ +L + L +
Sbjct: 411 QDMNFINNYKIDCPTLARFCLMVKKGY-RDPPYHNWMHAFSVSHFCYLLYKNLELTNYLE 469
Query: 151 PLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDE-SVLENHHLAVAFKLLQNEG 209
+EI A + HD+DH G N F + S S LA +Y+ E SV+E HH A A +L G
Sbjct: 470 DIEIFALFISCMCHDLDHRGTNNSFQVASKSVLAALYSSEGSVMERHHFAQAIAILNTHG 529
Query: 210 CDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLR 269
C+I + ++K Q + ++ D++L+TD
Sbjct: 530 CNIFDHFSRKDYQRMLDLMRDIILATD--------------------------------- 556
Query: 270 KMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSN 329
++ H+ + DL+ M E +N +L L+ DLS+
Sbjct: 557 -----------LAHHLRIFKDLQKMAEVG-------YDRNNKQHHRLLLCLLMTSCDLSD 598
Query: 330 PTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLW 389
TK RK +L+ +EFF QGD E+ + M DR A I + Q+ F+++I P++
Sbjct: 599 QTKGWKTTRKIAELIYKEFFSQGDLEKAMGNRPMEMMDREKAYIPELQISFMEHIAMPIY 658
Query: 390 ETWADLVHPDAQEILDMLEENRDWYQ 415
+ DL P A E+ + + NR+ +
Sbjct: 659 KLLQDL-FPKAAELYERVASNREHWT 683
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle
dysfunction, inhibitor design, allosteric enzyme,
alternative splicing, CGMP binding; HET: WAN; 2.00A
{Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A
2k31_A*
Length = 878
Score = 329 bits (845), Expect = e-104
Identities = 80/325 (24%), Positives = 145/325 (44%), Gaps = 54/325 (16%)
Query: 96 LKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIM 155
++ F + + ++++++ +Y K+ +HN HA + Q L + +++ T LEI+
Sbjct: 588 VQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEIL 647
Query: 156 AALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCN 215
A L AA HD+DH G+ N ++ S LA +Y S++E+HH +L + G IL
Sbjct: 648 ALLIAALSHDLDHRGVNNSYIQRSEHPLAQLYCH-SIMEHHHFDQCLMILNSPGNQILSG 706
Query: 216 LNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDM 275
L+ ++ +T K++ +L+TD
Sbjct: 707 LSIEEYKTTLKIIKQAILATD--------------------------------------- 727
Query: 276 VLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLP 335
++ ++ + ++ + L++ + L L+ DLS TKP P
Sbjct: 728 -----LALYIKRRGEFFELIRKNQFN------LEDPHQKELFLAMLMTACDLSAITKPWP 776
Query: 336 LYRKWVDLLMEEFFQQGDKER-ELNLDISPMCDRLSAT-IEKSQVGFIDYIVHPLWETWA 393
+ ++ +L+ EFF QGD+ER ELN++ + + +R I QVGFID I L+E
Sbjct: 777 IQQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALT 836
Query: 394 DLVHPDAQEILDMLEENRDWYQNYI 418
+ D +LD +NR +Q
Sbjct: 837 HV-SEDCFPLLDGCRKNRQKWQALA 860
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.2 bits (176), Expect = 2e-13
Identities = 75/535 (14%), Positives = 146/535 (27%), Gaps = 178/535 (33%)
Query: 79 HGVETASEEELGNNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNV 138
H ++ + E +D+L F A F+ + V+D P + +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFE-DA-----FVDNFDCKDVQDMP-------KSILSKEEI 51
Query: 139 --LLNSPALED----VFTPLEI----MAALFAATIHDVDHPGLTNQF----------LIN 178
++ S +F L M F + +++ L +
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 179 SSSELALMYNDESVLENHHL--AVAFKLLQNEGCDILCNLNKKQ-----------KQTLR 225
+ +YND V +++ + L+ L L + K +
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA----LLELRPAKNVLIDGVLGSGKTWV- 166
Query: 226 KMVIDMVLSTDIRS------------------------QNLAVAFKLLQNEGCDILCNL- 260
+D+ LS ++ Q L D N+
Sbjct: 167 --ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 261 ---------------NKKQKQTLRKMVIDMVLSTDMSKHMSLLADL--KTMVETKKVAGS 303
+K + L +V+ V + +L K ++ T+ +
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCL--LVLLNVQNAKAWNAF----NLSCKILLTTRFKQVT 278
Query: 304 GVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDIS 363
L T L H + P + L K++D ++ L +
Sbjct: 279 DFLSAATTTHIS-----LDHHSMTLTPDEVKSLLLKYLDCRPQD-------LPREVLTTN 326
Query: 364 PM-----------------------CDRLSATIEKS---------QVGFIDYIVHP---- 387
P CD+L+ IE S + F V P
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 388 -----LWETWADLVHPDAQEILDMLEE----NRDWYQNYI-VHPLW-------ETWADLV 430
L W D++ D +++ L + + ++ I + ++ E L
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL- 445
Query: 431 HPDAQEILDMLEENRDWYQSMIPPSPPPTD------LGDATKQEQGQEEEDEGRE 479
H + I+D + + + PP D +G K + E R
Sbjct: 446 H---RSIVDHYNIPKTFDSDDL--IPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 2e-05
Identities = 80/478 (16%), Positives = 133/478 (27%), Gaps = 200/478 (41%)
Query: 87 EELGNNRDLLKTFLIPAKTFINFM----MTLEDHYVKDNPFHNSTHAADVTQ-------- 134
EEL RDL +T+ + I F L + T ++ +
Sbjct: 171 EEL---RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF--TQGLNILEWLENPSNT 225
Query: 135 -STNVLLNSP----------------ALEDV-FTPLEIMAALFAATIHDVDHPGLTNQFL 176
+ LL+ P + + FTP E+ + L AT H
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG--------- 276
Query: 177 INSSSELALMYNDESVLENHHLAV--AFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLS 234
+ ++ +A + ES + A+ F + G
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFI----GV------------------------ 308
Query: 235 TDIRSQ----NLAVAFKLLQ-----NEG--CDILC--NLNKKQKQTLRKMVIDMV---LS 278
R N ++ +L+ NEG +L NL ++Q Q ++ L
Sbjct: 309 ---RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY----VNKTNSHLP 361
Query: 279 TDMSKHMSL---------------LADLKTMVETKKVAGSGVLLLDN----YTDRIQVLE 319
+SL L L + K A SG LD +++R
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK-APSG---LDQSRIPFSERKLKFS 417
Query: 320 N--LV-----HCADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSAT 372
N L H L DL+ ++ + N+ +
Sbjct: 418 NRFLPVASPFHS----------HLLVPASDLINKDLVKN-------NVSFNA-------- 452
Query: 373 IEKSQVGFIDYIVHPLW--ETWADLVHPDA---QEILDMLEENRDWYQNYIVHPL-WETW 426
+ P++ +DL + I+D + I P+ WET
Sbjct: 453 ---KDIQI------PVYDTFDGSDLRVLSGSISERIVDCI----------IRLPVKWET- 492
Query: 427 ADLVHPDAQEILD-----------MLEENRD--WYQSMIPPSP----PPTDLGDATKQ 467
A ILD + N+D + +I P D G KQ
Sbjct: 493 --TTQFKATHILDFGPGGASGLGVLTHRNKDGTGVR-VIVAGTLDINPDDDYGF--KQ 545
Score = 44.7 bits (105), Expect = 7e-05
Identities = 92/566 (16%), Positives = 160/566 (28%), Gaps = 219/566 (38%)
Query: 55 MSHISGVKRPLT--H----------TNS-FTGEKL--------PKHGVETASEEELGNNR 93
M S RPLT H T S F +L P+ A+++E
Sbjct: 1 MDAYS--TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 94 DLLKTFL------IPAKTFINFMMTL-------EDHYVKDNPFH------NSTHAADVTQ 134
+L+ FL + F L E+ Y++ N H + + +
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 135 STNVLLN-SPALEDVFTPLEIMA--ALFAATIHDVDHPGLTNQFLI-----NSSS---EL 183
+ ++ N A P + + ALF A G I N+ EL
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAV-----GEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 184 ALMYNDESVLENHHLAVAFKLLQN-------------EGCDILCNLNKKQKQ-------- 222
+Y VL + + + L +G +IL L
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 223 ------------------TLRKM------VIDMVLSTDIRSQNLAVA-----------FK 247
T + + + + SQ L A F
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 248 LLQNEGCDIL------CNLNKKQK----QTLR-KMVID-----------MVLSTDMSKHM 285
+ + +L C + +L ++ D M+ +++++
Sbjct: 294 VSVRKAITVLFFIGVRC-----YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ-- 346
Query: 286 SLLADLKTMV--------ETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLY 337
++ V K+V S L N + NLV +S P P LY
Sbjct: 347 ---EQVQDYVNKTNSHLPAGKQVEIS----LVN-GAK-----NLV----VSGP--PQSLY 387
Query: 338 RKWVDLLMEEFFQQGDKERELNLDIS--PMCDRLSATIEKSQVG---------FIDYIVH 386
++L + + + LD S P +R K + F H
Sbjct: 388 G--LNLTLRK------AKAPSGLDQSRIPFSER------KLKFSNRFLPVASPF-----H 428
Query: 387 -PLWETWADLVHPDAQEILDMLEENRDWYQNYIVHPLW--ETWADLVHPDA---QEILDM 440
L +DL+ D+++ N + I P++ +DL + I+D
Sbjct: 429 SHLLVPASDLI------NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Query: 441 LEENR-DWYQSMIPPSPPPT---DLG 462
+ W + T D G
Sbjct: 483 IIRLPVKWETTT---QFKATHILDFG 505
Score = 40.0 bits (93), Expect = 0.002
Identities = 31/170 (18%), Positives = 46/170 (27%), Gaps = 63/170 (37%)
Query: 28 SQGSDPRSGGASSKKKD---RG-GPPGRTVPMSHISGVKRP-----LTHTNSFTGEKLPK 78
+ P + S +D G P PM IS + + + TNS LP
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPS---PMLSISNLTQEQVQDYVNKTNS----HLPA 362
Query: 79 HG-VETASEEELGNNRDLLKTFLI--PAKTFINFMMTLEDHYVKDN-------------- 121
VE + L N ++ P ++ +TL
Sbjct: 363 GKQVEIS----LVNGAK---NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 122 ----------PFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAA 161
PFH+ LL PA + + L F A
Sbjct: 416 FSNRFLPVASPFHSH------------LL-VPASDLINKDLVKNNVSFNA 452
>3r9f_A MCCE protein; microcin C7, acetyltransferase, SELF immunity,
resistance, A coenzyme A, transferase; HET: COA GSU;
1.20A {Escherichia coli} PDB: 3r95_A* 3r96_A* 3r9e_A*
3r9g_A*
Length = 188
Score = 31.5 bits (72), Expect = 0.36
Identities = 7/52 (13%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 399 DAQEILDMLEENRDWYQNYIVHPLWETWADLVHPDAQEILDMLEENRDWYQS 450
A+E+ ++ +N+ + W V+ + + + +E++ Q+
Sbjct: 31 YAEELYLLINQNKINFIK------SMAWPAFVN-NISDSVSFIEQSMIDNQN 75
Score = 29.2 bits (66), Expect = 1.9
Identities = 6/47 (12%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 433 DAQEILDMLEENRDWYQSMIPPSPPPTDLGDATKQ-EQGQEEEDEGR 478
A+E+ ++ +N+ + + ++ D+ EQ + +
Sbjct: 31 YAEELYLLINQNKINFIKSMAWPAFVNNISDSVSFIEQSMIDNQNEK 77
>3icy_A Sensor protein; sensory box histidine kinase/response regulator
domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A
{Chlorobaculum tepidum}
Length = 118
Score = 30.3 bits (69), Expect = 0.46
Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 6/38 (15%)
Query: 390 ETWADLVHPD-----AQEILDMLEENRDWYQNY-IVHP 421
++H D + + E Y IV P
Sbjct: 49 LNTLSMIHHDDRHMLSNAYSKLREAKHSLTLVYRIVTP 86
>1s7k_A Acetyl transferase; GNAT; 1.80A {Salmonella typhimurium} SCOP:
d.108.1.1 PDB: 1s7l_A* 1s7n_A* 1s7f_A 1z9u_A
Length = 182
Score = 30.3 bits (69), Expect = 0.92
Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 7/52 (13%)
Query: 399 DAQEILDMLEENRDWYQNYIVHPLWETWADLVHPDAQEILDMLEENRDWYQS 450
+ ++ +N+ W Q W +E ++ N +Q
Sbjct: 23 HVPALHQLVLKNKAWLQQ------SLDWPQY-VTSQEETRKHVQGNILLHQR 67
Score = 27.6 bits (62), Expect = 5.8
Identities = 6/48 (12%), Positives = 14/48 (29%), Gaps = 1/48 (2%)
Query: 433 DAQEILDMLEENRDWYQSMIPPSPPPTDLGDATKQ-EQGQEEEDEGRE 479
+ ++ +N+ W Q + T + K + G
Sbjct: 23 HVPALHQLVLKNKAWLQQSLDWPQYVTSQEETRKHVQGNILLHQRGYA 70
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein.,
structural genomics, PSI-2, protein STR initiative;
1.90A {Marinobacter aquaeolei}
Length = 115
Score = 28.7 bits (65), Expect = 1.4
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 6/38 (15%)
Query: 390 ETWADLVHPD-----AQEILDMLEENRDWYQNY-IVHP 421
E WA +HP+ + E D +Y +H
Sbjct: 38 EDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHR 75
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1210
Score = 30.6 bits (69), Expect = 1.5
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 401 QEILDMLEENRDWYQNYIVHPLWETWADLVHPDAQEILDMLEENRDWYQSMIPPSPPPTD 460
+E + L E++D Y W LV E LD EE MI S P D
Sbjct: 642 KEHIQQLIEDKDRYDIDPEQRF--GWTALVSSGLIEYLDAEEEE----TVMIAMS--PED 693
Query: 461 LGDATKQEQGQEEEDE 476
L + + + G E ++E
Sbjct: 694 LEASRQMQAGYEVKEE 709
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt
pseudomonas, protein binding; 2.50A {Pseudomonas
fluorescens}
Length = 452
Score = 30.1 bits (68), Expect = 1.7
Identities = 7/59 (11%), Positives = 15/59 (25%), Gaps = 1/59 (1%)
Query: 393 ADLVHPDAQEIL-DMLEENRDWYQNYIVHPLWETWADLVHPDAQEILDMLEENRDWYQS 450
+ L + + + N W +P+A +L + Y
Sbjct: 101 FANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.7
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 264 QKQTLRKMVIDMVLSTDMSKHMSLLADLKTMVE 296
+KQ L+K+ + L D S LA +K +E
Sbjct: 18 EKQALKKLQASLKLYADDSA--PALA-IKATME 47
Score = 28.0 bits (61), Expect = 4.2
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 350 QQGDK-ERELNL---DISPMCDRLSATIE 374
Q K + L L D +P + AT+E
Sbjct: 20 QALKKLQASLKLYADDSAPAL-AIKATME 47
Score = 27.2 bits (59), Expect = 7.8
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 220 QKQTLRKMVIDMVLSTDIRSQNLAV 244
+KQ L+K+ + L D + LA+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAI 42
>1bkj_A NADPH-flavin oxidoreductase; luminescence, flavoprotein; HET: FMN;
1.80A {Vibrio harveyi} SCOP: d.90.1.1 PDB: 2bkj_A*
Length = 240
Score = 29.2 bits (66), Expect = 2.2
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 10/68 (14%)
Query: 381 IDYIVHPLWETWADLVHPDAQEILDMLEENRDWYQNYIVHPLWETWADLV-----HPDAQ 435
+VH + + + +I + + +Y + + TW+ V
Sbjct: 172 AHVVVH--ENQYQE---LNLDDIQSYDQTMQAYYASRTSNQKLSTWSQEVTGKLAGESRP 226
Query: 436 EILDMLEE 443
IL L
Sbjct: 227 HILPYLNS 234
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; 2.37A {Chromobacterium violaceum}
Length = 125
Score = 28.2 bits (64), Expect = 2.3
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 390 ETWADLVHPD-----AQEILDMLEENRDWYQNY-IVHP 421
+ + VHPD +E+ + +R + Y IV P
Sbjct: 52 DAYFQRVHPDDRARVRRELDRHVLGDRPFDVEYRIVRP 89
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase,
fosfomyc binding, transferase; 2.50A {Streptomyces
tendae}
Length = 479
Score = 29.9 bits (68), Expect = 2.3
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 129 AADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSS 181
AA + + N P + + EI A A + G F +++S+
Sbjct: 43 AAATASAPVRIENCPDIVETAVLGEIFRAAGA----HAHYDGADETFTVDASA 91
>3igr_A Ribosomal-protein-S5-alanine N-acetyltransferase; fisch MCSG,
structural genomics, midwest center for structural GE
protein structure initiative; HET: MSE; 2.00A {Vibrio
fischeri}
Length = 184
Score = 28.8 bits (65), Expect = 3.1
Identities = 8/52 (15%), Positives = 14/52 (26%), Gaps = 6/52 (11%)
Query: 399 DAQEILDMLEENRDWYQNYIVHPLWETWADLVHPDAQEILDMLEENRDWYQS 450
DA I + NR WE + L + + ++
Sbjct: 19 DAVTIANYFMRNRHHLAP------WEPKRSHAFFTPEGWKQRLLQLVELHKH 64
>2aam_A Hypothetical protein TM1410; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, hydrolase; HET: MSE UNL; 2.20A {Thermotoga
maritima} SCOP: c.1.8.15
Length = 309
Score = 29.0 bits (64), Expect = 3.6
Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 8/92 (8%)
Query: 389 WETWADLVHPDAQEIL--DMLEENRDWYQNYIVHPLWETWADLVHPDAQEILDM-----L 441
E + + EE+ W NY V + W ++V ++D
Sbjct: 81 AEDYRFYWKESWYTNTPEWLGEEDPAWPGNYFVKYWYNEWKEIVFSYLDRVIDQGFKGIY 140
Query: 442 EENRDWYQSMIPPSPPPTDLGDATKQEQGQEE 473
+ D ++ + A K E
Sbjct: 141 LDRIDSFE-YWAQEGVISRRSAARKMINFVLE 171
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 29.2 bits (66), Expect = 3.7
Identities = 14/106 (13%), Positives = 32/106 (30%), Gaps = 7/106 (6%)
Query: 205 LQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFK-LLQN-EGCDILCNLNK 262
+ I+ K + T V MV T+I+ Q++ F L+ G + +
Sbjct: 648 RDEDRVRIISAFGKLKSNTDLSTVYGMVEKTEIKKQDMISFFSSALETLPGREFIFANLD 707
Query: 263 KQKQTLRK-----MVIDMVLSTDMSKHMSLLADLKTMVETKKVAGS 303
+ + + + + + D + +V
Sbjct: 708 RIIRLVIRYFTGNRTASRTVEMMIPVIGLDHPDAEDIVRNIGSKNI 753
>1nsl_A Probable acetyltransferase; structural genomics, hexamer,
alpha-beta, PSI, protein struc initiative, midwest
center for structural genomics; 2.70A {Bacillus
subtilis} SCOP: d.108.1.1
Length = 184
Score = 28.0 bits (63), Expect = 4.5
Identities = 7/51 (13%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 399 DAQEILDMLEENRDWYQNYIVHPLWETWADLVHPDAQEILDMLEENRDWYQ 449
DA+ + +++ +N+ + W +A+ ++ + R Y
Sbjct: 20 DAERLAELIIQNQQR-----LGK-WLFFAENPSSADTYRETIIPDWRRQYA 64
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic
initiation facto SGC, structural genomics; 1.80A
{Cryptosporidium parvum iowa II}
Length = 117
Score = 27.3 bits (60), Expect = 4.6
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 194 ENHHLAVAFKLLQNEGCDILCNLNKKQKQTLR-KMVIDM-VLSTDIRSQNLAVAFKLLQN 251
E ++L N D C +K+ +R KM + V DI + V+ + Q+
Sbjct: 31 EGQEYGQVQRMLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDI----VLVSLRDFQD 86
Query: 252 EGCDILCNLNKKQKQTLRKM 271
DI+ + + L+
Sbjct: 87 SKGDIILKYTPDEARALKSK 106
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 28.0 bits (62), Expect = 5.6
Identities = 6/53 (11%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 336 LYRKWVDL-----LMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDY 383
Y+ ++ + ++ FQ + + D + + + + G +D+
Sbjct: 38 WYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDF 90
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 27.9 bits (62), Expect = 6.2
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 336 LYRKWVDL-----LMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDY 383
Y+ ++ L E F++ D S + + T + + G ID+
Sbjct: 30 WYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDF 82
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 28.2 bits (62), Expect = 6.3
Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
Query: 146 EDVFTPLEI-MAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKL 204
V P + + A AA H L L+ + E+A +E V H + ++
Sbjct: 220 PGVLDPDVVPLCAALAAREHGDARRALD---LLRVAGEIAERRREERVRREHVYSARAEI 276
Query: 205 LQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNE 252
++ +++ L K L +++ + + +K L +
Sbjct: 277 ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTST 324
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Length = 334
Score = 28.0 bits (63), Expect = 7.0
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 271 MVIDMVLSTDMSKHMSLLADLKTMVET 297
+VI+ +S MS+L D+ +
Sbjct: 269 VVIERTISASEPSPMSVLWDVHLFMAC 295
>1fsu_A N-acetylgalactosamine-4-sulfatase; glycosaminoglycan degradation,
hydrolase, glycopr lysosome; HET: ALS NAG; 2.50A {Homo
sapiens} SCOP: c.76.1.2
Length = 492
Score = 28.2 bits (63), Expect = 7.1
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 431 HPD-AQEILDMLEENRDWYQSMIPPSPPPTD 460
+P ++L L+ +++ +P P D
Sbjct: 450 YPHIVTKLLSRLQF---YHKHSVPVYFPAQD 477
>3n2s_A NADPH-dependent nitro/flavin reductase; alpga-beta-alpha sandwich,
oxidoreductase; HET: FMN; 1.95A {Bacillus subtilis}
Length = 249
Score = 27.7 bits (62), Expect = 8.4
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 7/68 (10%)
Query: 381 IDYIVHPLWETWADLVHPDAQEILDMLEENRDWYQNYIVHPLWETWADLV-----HPDAQ 435
+ H T+ + + D+Y+ ETW+D +
Sbjct: 178 KQAVYH--ENTYNVNTDDFRHTMNTYDKTISDYYRERTNGKREETWSDQILNFMKQKPRT 235
Query: 436 EILDMLEE 443
+ D ++E
Sbjct: 236 YLNDYVKE 243
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.389
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,366,526
Number of extensions: 443640
Number of successful extensions: 1250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1176
Number of HSP's successfully gapped: 95
Length of query: 484
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 387
Effective length of database: 3,993,456
Effective search space: 1545467472
Effective search space used: 1545467472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)