RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7867
(484 letters)
>d1y2ka1 a.211.1.2 (A:86-411) Catalytic domain of cyclic nucleotide
phosphodiesterase pde4d {Human (Homo sapiens) [TaxId:
9606]}
Length = 326
Score = 311 bits (798), Expect = e-104
Identities = 215/328 (65%), Positives = 251/328 (76%), Gaps = 44/328 (13%)
Query: 91 NNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFT 150
RDLLKTF IP T I ++MTLEDHY D +HN+ HAADV QST+VLL++PALE VFT
Sbjct: 42 QERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFT 101
Query: 151 PLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGC 210
LEI+AA+FA+ IHDVDHPG++NQFLIN++SELALMYND SVLENHHLAV FKLLQ E C
Sbjct: 102 DLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENC 161
Query: 211 DILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRK 270
DI NL KKQ+Q+LRKMVID+VL+TD
Sbjct: 162 DIFQNLTKKQRQSLRKMVIDIVLATD---------------------------------- 187
Query: 271 MVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNP 330
MSKHM+LLADLKTMVETKKV SGVLLLDNY+DRIQVL+N+VHCADLSNP
Sbjct: 188 ----------MSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNP 237
Query: 331 TKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWE 390
TKPL LYR+W D +MEEFF+QGD+ERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWE
Sbjct: 238 TKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWE 297
Query: 391 TWADLVHPDAQEILDMLEENRDWYQNYI 418
TWADLVHPDAQ+ILD LE+NR+WYQ+ I
Sbjct: 298 TWADLVHPDAQDILDTLEDNREWYQSTI 325
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific
3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 324
Score = 284 bits (727), Expect = 2e-93
Identities = 93/326 (28%), Positives = 156/326 (47%), Gaps = 53/326 (16%)
Query: 91 NNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFT 150
++ L++ F I T ++ + D+Y ++NPFHN H V Q ++ +L++ F+
Sbjct: 39 HDLGLVRDFSINPVTLRRWLFCVHDNY-RNNPFHNFRHCFCVAQMMYSMVWLCSLQEKFS 97
Query: 151 PLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGC 210
+I+ + AA HD+DHPG N + IN+ +ELA+ YND S LENHH AVAF++L C
Sbjct: 98 QTDILILMTAAICHDLDHPGYNNTYQINARTELAVRYNDISPLENHHCAVAFQILAEPEC 157
Query: 211 DILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRK 270
+I N+ + +R+ +I ++L+TD
Sbjct: 158 NIFSNIPPDGFKQIRQGMITLILATD---------------------------------- 183
Query: 271 MVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNP 330
M++H ++ K +E N + L+ C D+SN
Sbjct: 184 ----------MARHAEIMDSFKEKMENFDY--------SNEEHMTLLKMILIKCCDISNE 225
Query: 331 TKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWE 390
+P+ + WVD L+EE+F Q D+E+ L ++P DR T +Q+GFI +++ P++E
Sbjct: 226 VRPMEVAEPWVDCLLEEYFMQSDREKSEGLPVAPFMDRDKVTKATAQIGFIKFVLIPMFE 285
Query: 391 TWADLVHPDAQEILDMLEENRDWYQN 416
T L + +L L E+RD Y+
Sbjct: 286 TVTKLFPMVEEIMLQPLWESRDRYEE 311
>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide
phosphodiesterase 1b, PDE1B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 357
Score = 283 bits (725), Expect = 1e-92
Identities = 117/361 (32%), Positives = 177/361 (49%), Gaps = 60/361 (16%)
Query: 91 NNRDLLKTFLIPAKTFINFMMTLEDHYVK-DNPFHNSTHAADVTQSTNVLLNSPALEDVF 149
+L+ F IP ++F+ LE Y K NP+HN HAADVTQ+ + L +
Sbjct: 44 TRHNLISRFKIPTVFLMSFLDALETGYGKYKNPYHNQIHAADVTQTVHCFLLRTGMVHCL 103
Query: 150 TPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEG 209
+ +E++A +FAA IHD +H G TN F I + SE A++YND SVLENHH++ F+L+Q++
Sbjct: 104 SEIELLAIIFAAAIHDYEHTGTTNSFHIQTKSECAIVYNDRSVLENHHISSVFRLMQDDE 163
Query: 210 CDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLR 269
+I NL K + LR +VI+MVL+TD
Sbjct: 164 MNIFINLTKDEFVELRALVIEMVLATD--------------------------------- 190
Query: 270 KMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSN 329
MS H + +KT ++ D+ + L L+H AD+S+
Sbjct: 191 -----------MSCHFQQVKTMKTALQQL-----------ERIDKPKALSLLLHAADISH 228
Query: 330 PTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLW 389
PTK ++ +W LMEEFF+QGDKE EL L SP+CDR S + +SQ+GFID+IV P +
Sbjct: 229 PTKQWLVHSRWTKALMEEFFRQGDKEAELGLPFSPLCDRTSTLVAQSQIGFIDFIVEPTF 288
Query: 390 ETWADLVHPDAQEILDMLEENRDWYQNYIVHPLWETWADLVHPDAQEI----LDMLEENR 445
D+ Q + D ++++ P + +PD + ++EN+
Sbjct: 289 SVLTDVAEKSVQPLADEDSKSKNQPSFQWRQPSLDVEVGDPNPDVVSFRSTWVKRIQENK 348
Query: 446 D 446
Sbjct: 349 Q 349
>d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase
pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]}
Length = 326
Score = 279 bits (715), Expect = 2e-91
Identities = 95/327 (29%), Positives = 160/327 (48%), Gaps = 53/327 (16%)
Query: 91 NNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFT 150
+ +L++ F + + ++++++ +Y K+ +HN HA + Q L + +++ T
Sbjct: 47 TDLNLVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLT 106
Query: 151 PLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGC 210
LEI+A L AA HD+DHPG++NQFLIN++SELALMYNDESVLE+HH
Sbjct: 107 DLEILALLIAALSHDLDHPGVSNQFLINTNSELALMYNDESVLEHHH------------- 153
Query: 211 DILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRK 270
+L + G IL L+ ++ +T K
Sbjct: 154 -------------------------------FDQCLMILNSPGNQILSGLSIEEYKTTLK 182
Query: 271 MVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNP 330
++ +L+TD++ ++ + ++ + L++ + L L+ DLS
Sbjct: 183 IIKQAILATDLALYIKRRGEFFELIRKNQFN------LEDPHQKELFLAMLMTACDLSAI 236
Query: 331 TKPLPLYRKWVDLLMEEFFQQGDKER-ELNLDISPMCDRLSAT-IEKSQVGFIDYIVHPL 388
TKP P+ ++ +L+ EFF QGD+ER ELN++ + + +R I QVGFID I L
Sbjct: 237 TKPWPIQQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQL 296
Query: 389 WETWADLVHPDAQEILDMLEENRDWYQ 415
+E + D +LD +NR +Q
Sbjct: 297 YEALTHV-SEDCFPLLDGCRKNRQKWQ 322
>d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic
phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId:
9606]}
Length = 415
Score = 275 bits (704), Expect = 1e-88
Identities = 109/414 (26%), Positives = 163/414 (39%), Gaps = 110/414 (26%)
Query: 91 NNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSP------- 143
+ LL+ F IP + F+N+ LE+ Y +D P+HN HA DV + L P
Sbjct: 47 QDTGLLEIFKIPTQQFMNYFRALENGY-RDIPYHNRIHATDVLHAVWYLTTRPVPGLQQI 105
Query: 144 -------------------------------------ALEDVFTPLEIMAALFAATIHDV 166
L LE+MA AA +HD
Sbjct: 106 HNGCGTGNETDSDGRINHGRIAYISSKSCSNPDESYGCLSSNIPALELMALYVAAAMHDY 165
Query: 167 DHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRK 226
DHPG TN FL+ +++ A++YND SVLENHH A A+ L
Sbjct: 166 DHPGRTNAFLVATNAPQAVLYNDRSVLENHHAASAWNL---------------------- 203
Query: 227 MVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMS 286
L + L +L+ + + R +VI+ +L+TD+ KH
Sbjct: 204 ---------------------YLSRPEYNFLLHLDHVEFKRFRFLVIEAILATDLKKHFD 242
Query: 287 LLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLME 346
LA+ S + N DR+ V + + AD++ P K L+ KW + ++
Sbjct: 243 FLAEFNAKANDVN---SNGIEWSNENDRLLVCQVCIKLADINGPAKVRDLHLKWTEGIVN 299
Query: 347 EFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDM 406
EF++QGD+E L L ISP DR S + K Q FI +IV PL ++ + L+
Sbjct: 300 EFYEQGDEEANLGLPISPFMDRSSPQLAKLQESFITHIVGPLCNSYDAA-GLLPGQWLEA 358
Query: 407 LEENRDWYQNYIVHPLWETWADLVHPDAQEILDMLEENRDWYQSMIPPSPPPTD 460
E+N D + E LD +E + + + P PP
Sbjct: 359 EEDND------------TESGDD---EDGEELDTEDEEME---NNLNPKPPRRK 394
>d1f9ya_ d.58.30.1 (A:) 6-hydroxymethyl-7,8-dihydropterin
pyrophosphokinase, HPPK {Escherichia coli [TaxId: 562]}
Length = 158
Score = 31.7 bits (71), Expect = 0.10
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 12/64 (18%)
Query: 380 FIDYIVHPLWETWADLVHPDAQEILDMLEENRDWYQNYIVHPLWETWADLVHPDAQEILD 439
+ + + + H D + + +++ PL+E +LV PD + +
Sbjct: 98 IMLFGNEVINTERLTVPHYDMKN------------RGFMLWPLFEIAPELVFPDGEMLRQ 145
Query: 440 MLEE 443
+L
Sbjct: 146 ILHT 149
>d1cbka_ d.58.30.1 (A:) 6-hydroxymethyl-7,8-dihydropterin
pyrophosphokinase, HPPK {Haemophilus influenzae [TaxId:
727]}
Length = 160
Score = 30.9 bits (69), Expect = 0.16
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 391 TWADLVHPDAQEIL-DMLEENRDWYQNY--IVHPLWETWADLVHPDAQEILDMLEENRDW 447
D++ + I + L N ++ PL+E +DLV P++Q I +++++ D
Sbjct: 94 LDLDILLYGNEIIQNERLTIPHYDMHNREFVIVPLFEIASDLVLPNSQIITELVKQFAD- 152
Query: 448 YQSMIPPSP 456
MI +P
Sbjct: 153 -HKMIKLNP 160
Score = 27.0 bits (59), Expect = 4.0
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 382 DYIVHPLWETWADLVHPDAQEILDMLEENRD 412
++++ PL+E +DLV P++Q I +++++ D
Sbjct: 122 EFVIVPLFEIASDLVLPNSQIITELVKQFAD 152
>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 446
Score = 31.1 bits (69), Expect = 0.34
Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 8/84 (9%)
Query: 389 WETWADLVHPDAQEIL----DMLEENRDWYQNYIVH----PLWETWADLVHPDAQEILDM 440
+ + + L M+ EN + W ++ + V +E+
Sbjct: 13 FNSGKTRSLQFRIQQLEALQRMINENLKSISGALASDLGKNEWTSYYEEVAHVLEELDTT 72
Query: 441 LEENRDWYQSMIPPSPPPTDLGDA 464
++E DW + T D
Sbjct: 73 IKELPDWAEDEPVAKTRQTQQDDL 96
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 366
Score = 30.7 bits (68), Expect = 0.40
Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 11/126 (8%)
Query: 36 GGASSKKKDRGGPPGRTVPMSHISGVKRPLTHTNSFTGEKLPKHGVETASEEELGNNRDL 95
G + + + G LTH L + +E S++E+ +L
Sbjct: 242 SGLGFESGGLAAAHAIHNGFTALEGEIHHLTHGEKVAFGTLVQLALEEHSQQEIERYIEL 301
Query: 96 LKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIM 155
+P +TLED +KD + A + +++ T ++
Sbjct: 302 YLCLDLP--------VTLEDIKLKDASREDILKVAKAATAEGETIHNAF---NVTADDVA 350
Query: 156 AALFAA 161
A+FAA
Sbjct: 351 DAIFAA 356
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 28.8 bits (63), Expect = 1.4
Identities = 16/198 (8%), Positives = 54/198 (27%), Gaps = 4/198 (2%)
Query: 255 DILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDR 314
+ CNL QK+ + + + ++ L ++ KK+ L+ +
Sbjct: 16 VVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTG 75
Query: 315 IQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIE 374
+ + + + TK + L+++ + + + E
Sbjct: 76 EEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFE 135
Query: 375 KSQVGFIDYIVHPLWETWADLVHPDAQEILDMLEENRDWYQNYIVHPLWETWADLVHPDA 434
K + + +I++ +++ +
Sbjct: 136 K----LCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGAN 191
Query: 435 QEILDMLEENRDWYQSMI 452
+ ++ + N + +
Sbjct: 192 RLVMFDPDWNPANDEQAM 209
>d1oyja1 a.45.1.1 (A:86-230) Class tau GST {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 145
Score = 27.4 bits (60), Expect = 2.3
Identities = 14/120 (11%), Positives = 37/120 (30%), Gaps = 13/120 (10%)
Query: 338 RKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKS---------QVGFIDYIVHPL 388
RK D + +G+ + +++ + L A + ++GF+D + P
Sbjct: 28 RKLYDCGSRLWRLKGEPQAAAGREMAEILRTLEAELGDREFFGGGGGGRLGFVDVALVPF 87
Query: 389 WETWADLVHPDAQEILDMLEENRDWYQNYIVHPLWETWADLVHPDAQEILDMLEENRDWY 448
+ + ++ W + P +++ D + + Y
Sbjct: 88 TAWFYSYERCGGFSVEEVAPRLAAWARRCGRIDSVVK----HLPSPEKVYDFVGVLKKKY 143
>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 27.8 bits (61), Expect = 2.6
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 432 PDAQEILDMLEENRDWYQSMIPPSPPPTDL 461
P + + LE D++ S P P +L
Sbjct: 259 PTFEYLQAFLE---DYFTSTEPQYQPGENL 285
>d1p49a_ c.76.1.2 (A:) Steryl-sulfatase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 553
Score = 27.9 bits (60), Expect = 3.3
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 427 ADLVHPDAQEILDMLEENRDWYQSMIPPSPPPTDLGDAT 465
P EIL +++E D + +P P +
Sbjct: 494 TPASEPRFYEILKVMQEAADRHTQTLPEVPDQFSWNNFL 532
>d2aama1 c.1.8.15 (A:28-312) Hypothetical protein TM1410 {Thermotoga
maritima [TaxId: 2336]}
Length = 285
Score = 27.3 bits (60), Expect = 4.0
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 389 WETWADLVHPDAQEIL--DMLEENRDWYQNYIVHPLWETWADLVHPDAQEILDM 440
E + + EE+ W NY V + W ++V ++D
Sbjct: 68 AEDYRFYWKESWYTNTPEWLGEEDPAWPGNYFVKYWYNEWKEIVFSYLDRVIDQ 121
>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 102
Score = 25.4 bits (56), Expect = 7.8
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 202 FKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLN 261
++ +G L + + K + D+V+ ++ CDI+
Sbjct: 35 VRVRCLDGKTRLGRIPGRLKNRIWVREGDVVI-VKPWEVQG--------DQKCDIIWRYT 85
Query: 262 KKQKQTLRKM 271
K Q + L++
Sbjct: 86 KTQVEWLKRK 95
>d2etva1 c.92.2.4 (A:25-358) Putative iron(III) transporter TM0189
{Thermotoga maritima [TaxId: 2336]}
Length = 334
Score = 26.4 bits (57), Expect = 8.0
Identities = 4/30 (13%), Positives = 14/30 (46%)
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYIVHPL 422
+++P+ +D E+ + Y+ + +
Sbjct: 279 GKVLYPERFTDIDPEEKADEIYEFLLGKRV 308
>d1s7ka1 d.108.1.1 (A:3-176) L7/L12-Ribosomal-protein-serine
acetyltransferase RimL {Salmonella typhimurium [TaxId:
90371]}
Length = 174
Score = 26.1 bits (56), Expect = 8.8
Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 7/52 (13%)
Query: 399 DAQEILDMLEENRDWYQNYIVHPLWETWADLVHPDAQEILDMLEENRDWYQS 450
+ ++ +N+ W Q W V +E ++ N +Q
Sbjct: 18 HVPALHQLVLKNKAWLQQ------SLDWPQYVT-SQEETRKHVQGNILLHQR 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.389
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,779,047
Number of extensions: 83465
Number of successful extensions: 387
Number of sequences better than 10.0: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 37
Length of query: 484
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 395
Effective length of database: 1,185,626
Effective search space: 468322270
Effective search space used: 468322270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.4 bits)