BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7868
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R47|A Chain A, Crystal Structure Of Mth_862 Protein Of Unknown Function
From Methanothermobacter Thermautotrophicus
pdb|2R47|B Chain B, Crystal Structure Of Mth_862 Protein Of Unknown Function
From Methanothermobacter Thermautotrophicus
pdb|2R47|C Chain C, Crystal Structure Of Mth_862 Protein Of Unknown Function
From Methanothermobacter Thermautotrophicus
pdb|2R47|D Chain D, Crystal Structure Of Mth_862 Protein Of Unknown Function
From Methanothermobacter Thermautotrophicus
pdb|2R47|E Chain E, Crystal Structure Of Mth_862 Protein Of Unknown Function
From Methanothermobacter Thermautotrophicus
Length = 157
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 6 IQHKVYISTQRNKKEEKNDFHGEDLIVTPFAQILA-SLRSVRNNFLSLTNVPTAKILCLT 64
I+ + + + K E+ F G + TPFAQ+ A ++R N F+ T+ A+ L +T
Sbjct: 12 IKEHLGVFREAVKDAERIGFAGVPGVXTPFAQLFAYAVRDKDNIFIPNTDFSKARKLEVT 71
Query: 65 AYN 67
Y
Sbjct: 72 EYG 74
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 16/66 (24%)
Query: 51 SLTNVPTAKILCLTAYNEGIYPQPLCKLLNINPVWSAVPDDAYLKLSIETMEELDWCLDQ 110
++T+V +++LCL E I +P W DA ++ E +DW DQ
Sbjct: 141 AVTSVKVSQLLCL----ENIKDKP----------WHICASDAIKGEGLQ--EGVDWLQDQ 184
Query: 111 LETIQT 116
++T++T
Sbjct: 185 IQTVKT 190
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 63 LTAYN-EGIYPQPLCKLLN--INPVWSAVPDDAYLKLSIET---------MEELDWCLDQ 110
++ YN G P P ++N +N W PD YL + +E+ + + +
Sbjct: 155 MSVYNPTGAEPIPQNLIVNNTMNLTWEVQPDTTYLLRIVNVGGFVSQYFWIEDHEMTVVE 214
Query: 111 LETIQTHRSVSDMASLKVSQ 130
++ I T ++V+DM + V+Q
Sbjct: 215 IDGITTEKNVTDMLYITVAQ 234
>pdb|1W36|C Chain C, Recbcd:dna Complex
pdb|1W36|F Chain F, Recbcd:dna Complex
pdb|3K70|C Chain C, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
pdb|3K70|F Chain F, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
Length = 1122
Score = 26.6 bits (57), Expect = 4.9, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 59 KILCLTAYNEGIYPQPLCKL 78
K++CL N+G+YP+ L L
Sbjct: 673 KVVCLLGMNDGVYPRQLAPL 692
>pdb|4EVD|A Chain A, Crystal Structure Hp-Nap From Strain Ys29 Cadmium Loaded
(Cocrystallization 50mm)
pdb|4EVE|A Chain A, Crystal Structure Hp-Nap From Strain Ys29 In Apo Form
Length = 164
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 12 ISTQRNKKEEKNDFHGEDLIVTPFAQILASLRSVRNNFLSLTNVP 56
I R K+E K FH +D+ F +IL + + F L+N
Sbjct: 93 IKLTRVKEETKTSFHSKDI----FKEILEDYKHLEKEFKELSNTA 133
>pdb|1JI4|A Chain A, Nap Protein From Helicobacter Pylori
pdb|1JI4|B Chain B, Nap Protein From Helicobacter Pylori
pdb|1JI4|C Chain C, Nap Protein From Helicobacter Pylori
pdb|1JI4|D Chain D, Nap Protein From Helicobacter Pylori
pdb|1JI4|E Chain E, Nap Protein From Helicobacter Pylori
pdb|1JI4|F Chain F, Nap Protein From Helicobacter Pylori
pdb|1JI4|G Chain G, Nap Protein From Helicobacter Pylori
pdb|1JI4|H Chain H, Nap Protein From Helicobacter Pylori
pdb|1JI4|I Chain I, Nap Protein From Helicobacter Pylori
pdb|1JI4|J Chain J, Nap Protein From Helicobacter Pylori
pdb|1JI4|K Chain K, Nap Protein From Helicobacter Pylori
pdb|1JI4|L Chain L, Nap Protein From Helicobacter Pylori
Length = 144
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 12 ISTQRNKKEEKNDFHGEDLIVTPFAQILASLRSVRNNFLSLTNVP 56
I R K+E K FH +D+ F +IL + + F L+N
Sbjct: 73 IKLTRVKEETKTSFHSKDI----FKEILEDYKYLEKEFKELSNTA 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,926,012
Number of Sequences: 62578
Number of extensions: 143972
Number of successful extensions: 263
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 8
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)