BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7868
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P12252|PDE4B_DROME cAMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila
melanogaster GN=dnc PE=1 SV=4
Length = 1070
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 86/123 (69%), Gaps = 15/123 (12%)
Query: 12 ISTQRNKKEEK----NDFHGEDLIVTPFAQILASLRSVRNNFLSLTNVPTAKILCLTAYN 67
I+++R K++E + HGEDLIVTPFAQILASLRSVRNN LSLTNVP A N
Sbjct: 440 IASERFKEQEASILVDRSHGEDLIVTPFAQILASLRSVRNNLLSLTNVP--------ASN 491
Query: 68 EGIYP-QPLCKLLNINPVWSAVP--DDAYLKLSIETMEELDWCLDQLETIQTHRSVSDMA 124
+ P Q + NP + + ++AY +L+ +T+EELDWCLDQLETIQTHRSVSDMA
Sbjct: 492 KSRRPNQSSSASRSGNPPGAPLSQGEEAYTRLATDTIEELDWCLDQLETIQTHRSVSDMA 551
Query: 125 SLK 127
SLK
Sbjct: 552 SLK 554
>sp|Q9W4T4|PDE4A_DROME cAMP-specific 3',5'-cyclic phosphodiesterase, isoform I
OS=Drosophila melanogaster GN=dnc PE=1 SV=2
Length = 1209
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 86/123 (69%), Gaps = 15/123 (12%)
Query: 12 ISTQRNKKEEK----NDFHGEDLIVTPFAQILASLRSVRNNFLSLTNVPTAKILCLTAYN 67
I+++R K++E + HGEDLIVTPFAQILASLRSVRNN LSLTNVP A N
Sbjct: 579 IASERFKEQEASILVDRSHGEDLIVTPFAQILASLRSVRNNLLSLTNVP--------ASN 630
Query: 68 EGIYP-QPLCKLLNINPVWSAVP--DDAYLKLSIETMEELDWCLDQLETIQTHRSVSDMA 124
+ P Q + NP + + ++AY +L+ +T+EELDWCLDQLETIQTHRSVSDMA
Sbjct: 631 KSRRPNQSSSASRSGNPPGAPLSQGEEAYTRLATDTIEELDWCLDQLETIQTHRSVSDMA 690
Query: 125 SLK 127
SLK
Sbjct: 691 SLK 693
>sp|Q9W4T0|PDE4D_DROME cAMP-specific 3',5'-cyclic phosphodiesterase, isoform M
OS=Drosophila melanogaster GN=dnc PE=3 SV=2
Length = 903
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 86/123 (69%), Gaps = 15/123 (12%)
Query: 12 ISTQRNKKEEK----NDFHGEDLIVTPFAQILASLRSVRNNFLSLTNVPTAKILCLTAYN 67
I+++R K++E + HGEDLIVTPFAQILASLRSVRNN LSLTNVP A N
Sbjct: 273 IASERFKEQEASILVDRSHGEDLIVTPFAQILASLRSVRNNLLSLTNVP--------ASN 324
Query: 68 EGIYP-QPLCKLLNINPVWSAVP--DDAYLKLSIETMEELDWCLDQLETIQTHRSVSDMA 124
+ P Q + NP + + ++AY +L+ +T+EELDWCLDQLETIQTHRSVSDMA
Sbjct: 325 KSRRPNQSSSASRSGNPPGAPLSQGEEAYTRLATDTIEELDWCLDQLETIQTHRSVSDMA 384
Query: 125 SLK 127
SLK
Sbjct: 385 SLK 387
>sp|Q9W4S9|PDE4C_DROME cAMP-specific 3',5'-cyclic phosphodiesterase, isoforms N/G
OS=Drosophila melanogaster GN=dnc PE=3 SV=2
Length = 983
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 76/105 (72%), Gaps = 11/105 (10%)
Query: 26 HGEDLIVTPFAQILASLRSVRNNFLSLTNVPTAKILCLTAYNEGIYP-QPLCKLLNINPV 84
HGEDLIVTPFAQILASLRSVRNN LSLTNVP A N+ P Q + NP
Sbjct: 371 HGEDLIVTPFAQILASLRSVRNNLLSLTNVP--------ASNKSRRPNQSSSASRSGNPP 422
Query: 85 WSAVP--DDAYLKLSIETMEELDWCLDQLETIQTHRSVSDMASLK 127
+ + ++AY +L+ +T+EELDWCLDQLETIQTHRSVSDMASLK
Sbjct: 423 GAPLSQGEEAYTRLATDTIEELDWCLDQLETIQTHRSVSDMASLK 467
>sp|Q8IRU4|PDE4E_DROME cAMP-specific 3',5'-cyclic phosphodiesterase, isoform F
OS=Drosophila melanogaster GN=dnc PE=3 SV=1
Length = 662
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 76/105 (72%), Gaps = 11/105 (10%)
Query: 26 HGEDLIVTPFAQILASLRSVRNNFLSLTNVPTAKILCLTAYNEGIYP-QPLCKLLNINPV 84
HGEDLIVTPFAQILASLRSVRNN LSLTNVP A N+ P Q + NP
Sbjct: 50 HGEDLIVTPFAQILASLRSVRNNLLSLTNVP--------ASNKSRRPNQSSSASRSGNPP 101
Query: 85 WSAVP--DDAYLKLSIETMEELDWCLDQLETIQTHRSVSDMASLK 127
+ + ++AY +L+ +T+EELDWCLDQLETIQTHRSVSDMASLK
Sbjct: 102 GAPLSQGEEAYTRLATDTIEELDWCLDQLETIQTHRSVSDMASLK 146
>sp|P14270|PDE4D_RAT cAMP-specific 3',5'-cyclic phosphodiesterase 4D OS=Rattus
norvegicus GN=Pde4d PE=1 SV=4
Length = 803
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 75/109 (68%), Gaps = 19/109 (17%)
Query: 23 NDFHGEDLIVTPFAQILASLRSVRNNFLSLTNV----PTAKILCLTAYNEGIYPQPLCKL 78
+D HG+DLIVTPFAQ+LASLR+VRNNF +LTN+ P+ + P+C
Sbjct: 209 SDIHGDDLIVTPFAQVLASLRTVRNNFAALTNLQDRAPSKR-------------SPMCNQ 255
Query: 79 LNINPVWSAVPDDAYLKLSIETMEELDWCLDQLETIQTHRSVSDMASLK 127
+IN + + ++AY KL+ ET+EELDWCLDQLET+QT SVS+MAS K
Sbjct: 256 PSINK--ATITEEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNK 302
>sp|Q08499|PDE4D_HUMAN cAMP-specific 3',5'-cyclic phosphodiesterase 4D OS=Homo sapiens
GN=PDE4D PE=1 SV=2
Length = 809
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 75/109 (68%), Gaps = 19/109 (17%)
Query: 23 NDFHGEDLIVTPFAQILASLRSVRNNFLSLTNV----PTAKILCLTAYNEGIYPQPLCKL 78
+D HG+DLIVTPFAQ+LASLR+VRNNF +LTN+ P+ + P+C
Sbjct: 214 SDIHGDDLIVTPFAQVLASLRTVRNNFAALTNLQDRAPSKR-------------SPMCNQ 260
Query: 79 LNINPVWSAVPDDAYLKLSIETMEELDWCLDQLETIQTHRSVSDMASLK 127
+IN + + ++AY KL+ ET+EELDWCLDQLET+QT SVS+MAS K
Sbjct: 261 PSINK--ATITEEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNK 307
>sp|Q01063|PDE4D_MOUSE cAMP-specific 3',5'-cyclic phosphodiesterase 4D OS=Mus musculus
GN=Pde4d PE=1 SV=2
Length = 747
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 75/109 (68%), Gaps = 19/109 (17%)
Query: 23 NDFHGEDLIVTPFAQILASLRSVRNNFLSLTNV----PTAKILCLTAYNEGIYPQPLCKL 78
+D HG+DLIVTPFAQ+LASLR+VRNNF +LTN+ P+ + P+C
Sbjct: 153 SDIHGDDLIVTPFAQVLASLRTVRNNFAALTNLQDRAPSKR-------------SPMCNQ 199
Query: 79 LNINPVWSAVPDDAYLKLSIETMEELDWCLDQLETIQTHRSVSDMASLK 127
+IN + + ++AY KL+ ET+EELDWCLDQLET+QT SVS+MAS K
Sbjct: 200 PSINK--ATITEEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNK 246
>sp|Q07343|PDE4B_HUMAN cAMP-specific 3',5'-cyclic phosphodiesterase 4B OS=Homo sapiens
GN=PDE4B PE=1 SV=1
Length = 736
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/102 (54%), Positives = 71/102 (69%), Gaps = 12/102 (11%)
Query: 26 HGEDLIVTPFAQILASLRSVRNNFLSLTNVPTAKILCLTAYNEGIYPQPLCKLLNINPVW 85
HG+DLIVTPFAQ+LASLRSVRNNF LTN+ + P+ + +NP
Sbjct: 160 HGDDLIVTPFAQVLASLRSVRNNFTILTNLHGTS----NKRSPAASQPPVSR---VNP-- 210
Query: 86 SAVPDDAYLKLSIETMEELDWCLDQLETIQTHRSVSDMASLK 127
+++Y KL++ET+EELDWCLDQLETIQT+RSVS+MAS K
Sbjct: 211 ---QEESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNK 249
>sp|P14646|PDE4B_RAT cAMP-specific 3',5'-cyclic phosphodiesterase 4B OS=Rattus
norvegicus GN=Pde4b PE=1 SV=4
Length = 736
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 73/102 (71%), Gaps = 12/102 (11%)
Query: 26 HGEDLIVTPFAQILASLRSVRNNFLSLTNVPTAKILCLTAYNEGIYPQPLCKLLNINPVW 85
HG+DLIVTPFAQ+LASLR VRNNF LTN+ A A ++ P+ ++
Sbjct: 160 HGDDLIVTPFAQVLASLRIVRNNFTLLTNLHGAPNKRSPAASQA----PVTRV------- 208
Query: 86 SAVPDDAYLKLSIETMEELDWCLDQLETIQTHRSVSDMASLK 127
++ +++Y KL++ET+EELDWCLDQLETIQT+RSVS+MAS K
Sbjct: 209 -SLQEESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNK 249
>sp|P27815|PDE4A_HUMAN cAMP-specific 3',5'-cyclic phosphodiesterase 4A OS=Homo sapiens
GN=PDE4A PE=1 SV=3
Length = 886
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 71/105 (67%), Gaps = 12/105 (11%)
Query: 23 NDFHGEDLIVTPFAQILASLRSVRNNFLSLTNVPTAKILCLTAYNEGIYPQPLCKLLNIN 82
++ H EDLIVTPFAQ+LASLRSVR+NF LTNVP + P P+CK
Sbjct: 169 SEAHAEDLIVTPFAQVLASLRSVRSNFSLLTNVPVPS----NKRSPLGGPTPVCK----- 219
Query: 83 PVWSAVPDDAYLKLSIETMEELDWCLDQLETIQTHRSVSDMASLK 127
+ + ++ +L+ ET+EELDWCL+QLET+QT+RSVS+MAS K
Sbjct: 220 ---ATLSEETCQQLARETLEELDWCLEQLETMQTYRSVSEMASHK 261
>sp|O89084|PDE4A_MOUSE cAMP-specific 3',5'-cyclic phosphodiesterase 4A OS=Mus musculus
GN=Pde4a PE=2 SV=2
Length = 844
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 71/105 (67%), Gaps = 12/105 (11%)
Query: 23 NDFHGEDLIVTPFAQILASLRSVRNNFLSLTNVPTAKILCLTAYNEGIYPQPLCKLLNIN 82
++ HGEDLIVTPFAQ+LASLR+VR+NF LTNVP + P +CK
Sbjct: 164 SEAHGEDLIVTPFAQVLASLRNVRSNFSLLTNVPIPS----NKRSPLGGPPSVCK----- 214
Query: 83 PVWSAVPDDAYLKLSIETMEELDWCLDQLETIQTHRSVSDMASLK 127
+ + ++ +L+ ET+EELDWCL+QLET+QT+RSVS+MAS K
Sbjct: 215 ---ATLSEETCQQLARETLEELDWCLEQLETMQTYRSVSEMASHK 256
>sp|Q08493|PDE4C_HUMAN cAMP-specific 3',5'-cyclic phosphodiesterase 4C OS=Homo sapiens
GN=PDE4C PE=1 SV=2
Length = 712
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 72/108 (66%), Gaps = 11/108 (10%)
Query: 23 NDFHGEDLIVTPFAQILASLRSVRNNFLSLTNVPTAKILCLTAYNEGIYPQPLCKLLNIN 82
+D HGED+IVTPFAQ+LASLR+VR+N +L A+ CL A +G P+ + N
Sbjct: 143 SDLHGEDMIVTPFAQVLASLRTVRSNVAAL-----ARQQCLGAAKQG----PVGNPSSSN 193
Query: 83 PVWSAVPDDAYLKLSIETMEELDWCLDQLETIQTHRSVSDMASLKVSQ 130
+ A +D KL++ET++ELDWCLDQLET+QT SV +MAS K +
Sbjct: 194 QLPPA--EDTGQKLALETLDELDWCLDQLETLQTRHSVGEMASNKFKR 239
>sp|P54748|PDE4A_RAT cAMP-specific 3',5'-cyclic phosphodiesterase 4A OS=Rattus
norvegicus GN=Pde4a PE=1 SV=1
Length = 844
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 68/102 (66%), Gaps = 12/102 (11%)
Query: 26 HGEDLIVTPFAQILASLRSVRNNFLSLTNVPTAKILCLTAYNEGIYPQPLCKLLNINPVW 85
H EDLIVTPFAQ+LASLRSVR+NF LTNVP + P +CK
Sbjct: 167 HAEDLIVTPFAQVLASLRSVRSNFSLLTNVPIPS----NKRSPLGGPPSVCK-------- 214
Query: 86 SAVPDDAYLKLSIETMEELDWCLDQLETIQTHRSVSDMASLK 127
+ + ++ +L+ ET+EELDWCL+QLET+QT+RSVS+MAS K
Sbjct: 215 ATLSEETCQQLARETLEELDWCLEQLETMQTYRSVSEMASHK 256
>sp|Q22000|PDE4_CAEEL Probable 3',5'-cyclic phosphodiesterase pde-4 OS=Caenorhabditis
elegans GN=pde-4 PE=2 SV=2
Length = 674
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 68/102 (66%), Gaps = 11/102 (10%)
Query: 26 HGEDLIVTPFAQILASLRSVRNNFLSLTNVPTAKILCLTAYNEGIYPQPLCKLLNINPVW 85
HG+DLIVTPFAQ+LASLR+VR+N +S+TN+ + N PL +
Sbjct: 151 HGDDLIVTPFAQLLASLRNVRSNLISITNIQNSD--DSRHANRSAKRPPLHNI------- 201
Query: 86 SAVPDDAYLKLSIETMEELDWCLDQLETIQTHRSVSDMASLK 127
+PDD + + +T+EELDWCLDQLETIQTHRSVS+MAS K
Sbjct: 202 -ELPDDV-VHCAHDTLEELDWCLDQLETIQTHRSVSEMASSK 241
>sp|Q3UEI1|PDE4C_MOUSE cAMP-specific 3',5'-cyclic phosphodiesterase 4C OS=Mus musculus
GN=Pde4c PE=1 SV=1
Length = 686
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 69/108 (63%), Gaps = 17/108 (15%)
Query: 23 NDFHGEDLIVTPFAQILASLRSVRNNFLSLTNVPTAKILCLTAYNEGIYPQPLCKLLNIN 82
+D HGED+IVTPFAQ+LASLR+VRNN +L + P + + LL
Sbjct: 145 SDLHGEDMIVTPFAQVLASLRTVRNNVAALAHGPGSATRQV--------------LLGTP 190
Query: 83 PVWS--AVP-DDAYLKLSIETMEELDWCLDQLETIQTHRSVSDMASLK 127
P S A P +D+ L+L ET+EELDWCL+QLET+QT RSV +MAS K
Sbjct: 191 PHSSQQAAPTEDSGLQLVQETLEELDWCLEQLETLQTRRSVGEMASNK 238
>sp|P14644|PDE4C_RAT cAMP-specific 3',5'-cyclic phosphodiesterase 4C (Fragment)
OS=Rattus norvegicus GN=Pde4c PE=2 SV=2
Length = 536
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 68/108 (62%), Gaps = 17/108 (15%)
Query: 23 NDFHGEDLIVTPFAQILASLRSVRNNFLSLTNVPTAKILCLTAYNEGIYPQPLCKLLNIN 82
+D HGED+IVTPFAQ+LASLR+VR+N +L + G LL
Sbjct: 10 SDLHGEDMIVTPFAQVLASLRTVRSNVAALAH--------------GAGSATRQALLGTP 55
Query: 83 PVWS--AVP-DDAYLKLSIETMEELDWCLDQLETIQTHRSVSDMASLK 127
P S A P +++ L+L+ ET+EELDWCL+QLET+QT RSV +MAS K
Sbjct: 56 PQSSQQAAPAEESGLQLAQETLEELDWCLEQLETLQTRRSVGEMASNK 103
>sp|P75733|CHIP_ECOLI Chitoporin OS=Escherichia coli (strain K12) GN=chiP PE=1 SV=1
Length = 468
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 85 WSAVPDDAYLKLSIETMEELDWCLDQLETIQTHRSVSDMASLKVSQHNQHS 135
W + PD Y K T+EE + LD + TIQ R+ M L ++++ HS
Sbjct: 390 WQSNPDAYYDK--NRTIEESAYSLDAVYTIQDGRAKGTMFKLHFTEYDNHS 438
>sp|Q7CQY4|CHIP_SALTY Chitoporin OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC
700720) GN=chiP PE=1 SV=1
Length = 468
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 85 WSAVPDDAYLKLSIETMEELDWCLDQLETIQTHRSVSDMASLKVSQHNQHSH 136
W + PD Y K T+EE + LD + T+Q R+ M L ++++ HS+
Sbjct: 390 WQSNPDAYYDK--NRTIEESSYSLDAVYTLQEGRAKGTMFKLHFTEYDNHSN 439
>sp|Q55A09|Y9963_DICDI Probable serine/threonine-protein kinase DDB_G0272254
OS=Dictyostelium discoideum GN=DDB_G0272254 PE=3 SV=1
Length = 1331
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 73 QPLCKLLNINPVWSAVPDDAYLKLSIETMEELDWCLDQLETIQTHRS 119
Q L +L N N V S V ++KLS E+LDW + Q T+Q RS
Sbjct: 611 QELSQLENSNKVRSTV--SKFIKLSTGVEEKLDWAIAQQCTLQPPRS 655
>sp|O42575|CCNE3_XENLA G1/S-specific cyclin-E3 OS=Xenopus laevis GN=cyce3 PE=2 SV=1
Length = 408
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 35 FAQILASLRSVRNNFLSLTNVPTAKILCLTAYNEGIYPQPLCKLLNINPVWSAVPDDAYL 94
F + +A+ ++V + L L + + L + A E IYP L + I A +D
Sbjct: 172 FDRFMATQKNVIKSRLQLIGITS---LFIAAKMEEIYPPKLHQFAFITDC--ACTEDEIT 226
Query: 95 KLSIETMEELDWCLDQLETIQTHRSVSDMASLKVSQH 131
+ + M++LDWCL + + +A ++ QH
Sbjct: 227 SMELIIMKDLDWCLSPMTMVSWFNVFLQVAYIRELQH 263
>sp|P35739|NTRK1_RAT High affinity nerve growth factor receptor OS=Rattus norvegicus
GN=Ntrk1 PE=1 SV=1
Length = 799
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 88 VPDDAYLKLSIE--TMEELDWCLDQLETIQTHRSVSDMASLKVSQHN 132
V DD +L+ +E +++ DW L +LE T + D+ SL ++ N
Sbjct: 209 VGDDVFLQCQVEGQALQQADWILTELEGTATMKKSGDLPSLGLTLVN 255
>sp|Q3UFB7|NTRK1_MOUSE High affinity nerve growth factor receptor OS=Mus musculus GN=Ntrk1
PE=1 SV=2
Length = 799
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 88 VPDDAYLKLSIE--TMEELDWCLDQLETIQTHRSVSDMASL 126
V DD +L+ +E +++ DW L +LE T + D+ SL
Sbjct: 209 VGDDVFLQCQVEGLALQQADWILTELEGAATVKKFGDLPSL 249
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,890,711
Number of Sequences: 539616
Number of extensions: 1793613
Number of successful extensions: 3960
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3925
Number of HSP's gapped (non-prelim): 28
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)