Query psy7868
Match_columns 136
No_of_seqs 88 out of 107
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 20:52:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3689|consensus 98.8 6.8E-10 1.5E-14 103.3 -0.4 111 13-130 131-242 (707)
2 PF11050 Viral_env_E26: Virus 66.0 2.2 4.8E-05 35.4 0.3 24 35-58 46-69 (206)
3 PF15335 CAAP1: Caspase activi 48.7 13 0.00027 25.8 1.7 31 88-118 23-59 (64)
4 KOG1370|consensus 35.1 15 0.00032 33.3 0.4 13 98-110 105-117 (434)
5 COG4090 Uncharacterized protei 33.4 20 0.00044 28.6 0.9 11 31-41 37-47 (154)
6 PF03511 Fanconi_A: Fanconi an 28.5 32 0.00069 24.0 1.1 20 101-121 30-49 (64)
7 KOG4019|consensus 27.9 23 0.0005 29.3 0.4 19 35-53 44-62 (193)
8 PF10550 Toxin_36: Conantokin- 27.1 60 0.0013 16.8 1.7 11 90-100 2-12 (15)
9 COG4699 Uncharacterized protei 22.9 43 0.00094 25.9 1.0 19 102-120 68-86 (120)
10 PF08047 His_leader: Histidine 20.8 46 0.00099 17.5 0.5 14 123-136 1-14 (16)
11 PF09897 DUF2124: Uncharacteri 20.3 41 0.0009 26.7 0.5 25 31-55 30-57 (147)
No 1
>KOG3689|consensus
Probab=98.80 E-value=6.8e-10 Score=103.27 Aligned_cols=111 Identities=29% Similarity=0.263 Sum_probs=82.4
Q ss_pred eeccccccccccccCCCcccChhHHHHhhhhhhhhhhhhhcCCCcccc-ccccccCCCCCCCCccccccCCCCCCCCChh
Q psy7868 13 STQRNKKEEKNDFHGEDLIVTPFAQILASLRSVRNNFLSLTNVPTAKI-LCLTAYNEGIYPQPLCKLLNINPVWSAVPDD 91 (136)
Q Consensus 13 ~~~r~~~~~aSd~HgeDlIVTPFAQVLASLRsVR~Nf~~LTn~~~~~~-krs~~~~~~~~~~P~~~~~~~~p~~~~~~ee 91 (136)
.+++.+++ .+..||.+.||+++||+++.+|.++.++.+|+++....- ...+... +-|.. .-....+......
T Consensus 131 ~~~~~~~~-~~~~l~~~~i~~~~~ql~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~ 203 (707)
T KOG3689|consen 131 FTERDESV-FSAYLGFCSIVLKNAQLLASSRIERKRNQVLLDLADLMFEEQTDRES----IFPKI--LYTARSLLQCTRC 203 (707)
T ss_pred cccccHHH-HHhhcCCceeeccHHHHHHHhhhHHHHHHHHhhhhhHHHHHhcchhc----ccchh--hhhhhhhhhhccc
Confidence 34555443 567899999999999999999999999999999865421 2111111 11110 0001122346677
Q ss_pred HHHHhHHHHhhhhhhhhhhhhhhhhhcccchhhhccccc
Q psy7868 92 AYLKLSIETMEELDWCLDQLETIQTHRSVSDMASLKVSQ 130 (136)
Q Consensus 92 ~~~qlA~eTLeELDWCLdQLETIQT~rSVSeMAS~KFK~ 130 (136)
+++.+++++.+|++||++++++.++..++++|++.+||+
T Consensus 204 si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (707)
T KOG3689|consen 204 SIQLLDMSTLEEFSWVLDVLETEQTKPSTSDMAEIEFKK 242 (707)
T ss_pred ceeeeccccchhhhhhhHHHhhhhcCCCCchhhhHHHHh
Confidence 889999999999999999999999999999999999995
No 2
>PF11050 Viral_env_E26: Virus envelope protein E26; InterPro: IPR021286 DA26 (E26) is a multifunctional protein. One form of E26 associates with viral DNA or DNA binding proteins, while a second form associates with intracellular membranes [].
Probab=66.02 E-value=2.2 Score=35.36 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=21.4
Q ss_pred hHHHHhhhhhhhhhhhhhcCCCcc
Q psy7868 35 FAQILASLRSVRNNFLSLTNVPTA 58 (136)
Q Consensus 35 FAQVLASLRsVR~Nf~~LTn~~~~ 58 (136)
.|||.|+||..|-||..|+-+|-.
T Consensus 46 I~qiIaqL~kTrlnF~KlsqlqkK 69 (206)
T PF11050_consen 46 IAQIIAQLQKTRLNFNKLSQLQKK 69 (206)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHH
Confidence 399999999999999999988743
No 3
>PF15335 CAAP1: Caspase activity and apoptosis inhibitor 1
Probab=48.66 E-value=13 Score=25.79 Aligned_cols=31 Identities=29% Similarity=0.604 Sum_probs=18.9
Q ss_pred CChhHHHHhHHHHh-----hhh-hhhhhhhhhhhhhc
Q psy7868 88 VPDDAYLKLSIETM-----EEL-DWCLDQLETIQTHR 118 (136)
Q Consensus 88 ~~ee~~~qlA~eTL-----eEL-DWCLdQLETIQT~r 118 (136)
+.+...++++=+.| +|+ .||+|||+-|-+.|
T Consensus 23 l~~kkl~~MlPd~LK~~~l~elk~lCl~eL~~~S~kr 59 (64)
T PF15335_consen 23 LKEKKLQKMLPDILKGCSLEELKELCLEELEGMSEKR 59 (64)
T ss_pred cCHHHHHHHCHHHHhcCCHHHHHHHHHHHHHcccHHH
Confidence 44455555554433 222 59999999887654
No 4
>KOG1370|consensus
Probab=35.06 E-value=15 Score=33.35 Aligned_cols=13 Identities=46% Similarity=0.879 Sum_probs=11.4
Q ss_pred HHHhhhhhhhhhh
Q psy7868 98 IETMEELDWCLDQ 110 (136)
Q Consensus 98 ~eTLeELDWCLdQ 110 (136)
-||+||.-||.||
T Consensus 105 get~ee~~wcie~ 117 (434)
T KOG1370|consen 105 GETEEEYWWCIER 117 (434)
T ss_pred cccchhhhhhhhh
Confidence 5799999999986
No 5
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.45 E-value=20 Score=28.60 Aligned_cols=11 Identities=55% Similarity=0.930 Sum_probs=9.4
Q ss_pred ccChhHHHHhh
Q psy7868 31 IVTPFAQILAS 41 (136)
Q Consensus 31 IVTPFAQVLAS 41 (136)
.-|||||.||=
T Consensus 37 vCtPFAeL~~f 47 (154)
T COG4090 37 VCTPFAELLAF 47 (154)
T ss_pred ccccHHHHHHH
Confidence 46999999994
No 6
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=28.51 E-value=32 Score=24.00 Aligned_cols=20 Identities=30% Similarity=0.657 Sum_probs=15.6
Q ss_pred hhhhhhhhhhhhhhhhhcccc
Q psy7868 101 MEELDWCLDQLETIQTHRSVS 121 (136)
Q Consensus 101 LeELDWCLdQLETIQT~rSVS 121 (136)
..-||||.+-|+.++. |-+|
T Consensus 30 ~kaldiCaeIL~cLE~-R~is 49 (64)
T PF03511_consen 30 LKALDICAEILGCLEK-RKIS 49 (64)
T ss_pred HHHHHHHHHHHHHHHh-CCCc
Confidence 5569999999999987 4444
No 7
>KOG4019|consensus
Probab=27.95 E-value=23 Score=29.33 Aligned_cols=19 Identities=42% Similarity=0.450 Sum_probs=16.0
Q ss_pred hHHHHhhhhhhhhhhhhhc
Q psy7868 35 FAQILASLRSVRNNFLSLT 53 (136)
Q Consensus 35 FAQVLASLRsVR~Nf~~LT 53 (136)
|-|+|-|+|+||-||..=.
T Consensus 44 ~fq~lrsfrrvRi~f~~p~ 62 (193)
T KOG4019|consen 44 TFQLLRSFRRVRINFSNPE 62 (193)
T ss_pred HHHHHHhhceeEEeccChh
Confidence 4699999999999997643
No 8
>PF10550 Toxin_36: Conantokin-G mollusc-toxin; InterPro: IPR005918 The conantokins are a family of neuroactive peptides found in the venoms of fish-hunting cone snails. They possess a relatively high number of residues (4-5) of the non-standard amino acid gamma-carboxyglutamic acid (Gla), which is generated by the post-translational modification of glutamate (Glu) residues. Conantokins are the only naturally produced peptides known to be N-methyl-D-aspartate (NMDA) receptor antagonists and show therapeutic promise in treating conditions associated with NMDA receptor dysfunction. In animal models they have exhibited anticonvulsant and anti-Parkinsonian properties and have provided neuroprotection within therapeutically acceptable times following transient focal brain ischemia [, , , ]. Upon binding of Ca2+ to Gla, conantokin undergoes a conformational transition from a distorted curvilinear 3(10) helix to a linear alpha-helix. The binding of Ca2+ to conantokin leads to the exposure of a hydrophobic region on the opposite face of the helix []. Conantokins share relatively few sequence elements, which include include sequence identity at the first four residues, homologous positioning of the two most C-terminal Gla residues, and an Arg preceding the most C-terminal Gla []. The conantokin family is currently known to include: Conotoxin G from Conus geographus (Geography cone) (Nubecula geographus). Conantokin-L from Conus lynceus (Lynceus cone). Conantokin-R from Conus radiatus (Rayed cone). Conantokin-T from Conus tulipa (Fish-hunting cone snail) (Tulip cone). ; PDB: 1ONT_A.
Probab=27.06 E-value=60 Score=16.76 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=8.5
Q ss_pred hhHHHHhHHHH
Q psy7868 90 DDAYLKLSIET 100 (136)
Q Consensus 90 ee~~~qlA~eT 100 (136)
||+|+|++-+.
T Consensus 2 eee~~km~~~l 12 (15)
T PF10550_consen 2 EEEVAKMAAEL 12 (15)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 78899987664
No 9
>COG4699 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.87 E-value=43 Score=25.87 Aligned_cols=19 Identities=37% Similarity=0.838 Sum_probs=17.3
Q ss_pred hhhhhhhhhhhhhhhhccc
Q psy7868 102 EELDWCLDQLETIQTHRSV 120 (136)
Q Consensus 102 eELDWCLdQLETIQT~rSV 120 (136)
|+..||-|==|.||+.+|+
T Consensus 68 eD~~wCEDCeedLQ~fhsl 86 (120)
T COG4699 68 EDMEWCEDCEEDLQQFHSL 86 (120)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 6789999999999999994
No 10
>PF08047 His_leader: Histidine operon leader peptide; InterPro: IPR012565 This family consists of the leader peptide of the histidine (his) operon. The his operon contains all the genes necessary for histidine biosynthesis. The region corresponding to the untranslated 5'-end of the transcript, named the his leader region, displays the typical features of the T box transcriptional attenuation mechanism which is involved in the regulation of many amino acid biosynthetic operons [].; GO: 0000105 histidine biosynthetic process
Probab=20.80 E-value=46 Score=17.47 Aligned_cols=14 Identities=29% Similarity=0.684 Sum_probs=10.7
Q ss_pred hhhccccccccCCC
Q psy7868 123 MASLKVSQHNQHSH 136 (136)
Q Consensus 123 MAS~KFK~~~~~~~ 136 (136)
|.+.+||.+-.|-|
T Consensus 1 m~rvqfk~hhhhhh 14 (16)
T PF08047_consen 1 MNRVQFKHHHHHHH 14 (16)
T ss_pred CceeEecccccccC
Confidence 66788998877655
No 11
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=20.29 E-value=41 Score=26.66 Aligned_cols=25 Identities=28% Similarity=0.659 Sum_probs=15.5
Q ss_pred ccChhHHHHh-hhhhh--hhhhhhhcCC
Q psy7868 31 IVTPFAQILA-SLRSV--RNNFLSLTNV 55 (136)
Q Consensus 31 IVTPFAQVLA-SLRsV--R~Nf~~LTn~ 55 (136)
.-||||+.+| ++|.. +.-|.-.++.
T Consensus 30 vCtPFaeL~~Y~iR~~~~~~~FiP~~d~ 57 (147)
T PF09897_consen 30 VCTPFAELFAYAIRDKVKEQYFIPDADL 57 (147)
T ss_dssp TTHHHHHHHHHHTTTS--EEEEEETT-G
T ss_pred ccccHHHHHHHHHhhhccceeecCCCCh
Confidence 4599999998 45544 3335545554
Done!