Query psy7868
Match_columns 136
No_of_seqs 88 out of 107
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 20:52:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ce6_A Adenosylhomocysteinase; 22.6 22 0.00076 30.9 0.6 13 99-111 127-139 (494)
2 2r47_A Uncharacterized protein 22.4 22 0.00076 27.3 0.5 25 31-55 37-62 (157)
3 3h9u_A Adenosylhomocysteinase; 18.4 31 0.0011 29.9 0.6 23 88-110 80-112 (436)
4 1reg_X T4 REGA; translational 17.9 40 0.0014 25.0 1.0 7 2-8 43-49 (122)
5 3ond_A Adenosylhomocysteinase; 17.7 33 0.0011 30.1 0.6 25 87-111 93-127 (488)
6 1v8b_A Adenosylhomocysteinase; 17.2 35 0.0012 29.8 0.6 24 88-111 83-117 (479)
7 2cmz_A Spike glycoprotein; mem 16.6 64 0.0022 27.7 2.1 33 97-129 274-306 (423)
8 3n58_A Adenosylhomocysteinase; 16.4 37 0.0013 29.9 0.6 24 88-111 82-115 (464)
9 3gvp_A Adenosylhomocysteinase 16.1 38 0.0013 29.4 0.6 24 88-111 91-124 (435)
10 3jrn_A AT1G72930 protein; TIR 13.5 62 0.0021 24.5 1.1 14 103-116 76-89 (176)
No 1
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Probab=22.64 E-value=22 Score=30.95 Aligned_cols=13 Identities=46% Similarity=0.836 Sum_probs=9.6
Q ss_pred HHhhhhhhhhhhh
Q psy7868 99 ETMEELDWCLDQL 111 (136)
Q Consensus 99 eTLeELDWCLdQL 111 (136)
||+||..||++|.
T Consensus 127 ~~~~~y~~~~~~~ 139 (494)
T 3ce6_A 127 ETLEEYWWAAEQM 139 (494)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4678888888754
No 2
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=22.44 E-value=22 Score=27.33 Aligned_cols=25 Identities=40% Similarity=0.688 Sum_probs=15.0
Q ss_pred ccChhHHHHh-hhhhhhhhhhhhcCC
Q psy7868 31 IVTPFAQILA-SLRSVRNNFLSLTNV 55 (136)
Q Consensus 31 IVTPFAQVLA-SLRsVR~Nf~~LTn~ 55 (136)
.-|||||++| ++|....-|+-.++.
T Consensus 37 vCtPFaeL~~YaiR~~~~~FiP~~d~ 62 (157)
T 2r47_A 37 VCTPFAQLFAYAVRDKDNIFIPNTDF 62 (157)
T ss_dssp TTHHHHHHHHHHTTTSEEEEEETTCG
T ss_pred eecCHHhhheeeeeCCceEEcCCCCh
Confidence 4599999998 466632233333443
No 3
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=18.43 E-value=31 Score=29.91 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=17.6
Q ss_pred CChhHHHHhHH----------HHhhhhhhhhhh
Q psy7868 88 VPDDAYLKLSI----------ETMEELDWCLDQ 110 (136)
Q Consensus 88 ~~ee~~~qlA~----------eTLeELDWCLdQ 110 (136)
.+|+....||. ||.||..||++|
T Consensus 80 tqd~~aaal~~~gi~v~a~~ge~~~ey~~~~~~ 112 (436)
T 3h9u_A 80 TQDHAAAAIAKRGIPVFAWKGETEEEYMWCMKQ 112 (436)
T ss_dssp CCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHH
T ss_pred CcHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHH
Confidence 45666666663 789999999997
No 4
>1reg_X T4 REGA; translational regulator protein; 1.90A {Enterobacteria phage T4} SCOP: d.58.27.1
Probab=17.93 E-value=40 Score=25.05 Aligned_cols=7 Identities=71% Similarity=1.355 Sum_probs=5.1
Q ss_pred Cceeeee
Q psy7868 2 GRYYIQH 8 (136)
Q Consensus 2 ~~~~~~~ 8 (136)
|+|||-|
T Consensus 43 GkYyIvH 49 (122)
T 1reg_X 43 GLYYIVH 49 (122)
T ss_dssp TEEEEEE
T ss_pred CeEEEEE
Confidence 6777766
No 5
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*
Probab=17.68 E-value=33 Score=30.13 Aligned_cols=25 Identities=28% Similarity=0.540 Sum_probs=18.4
Q ss_pred CCChhHHHHhH----------HHHhhhhhhhhhhh
Q psy7868 87 AVPDDAYLKLS----------IETMEELDWCLDQL 111 (136)
Q Consensus 87 ~~~ee~~~qlA----------~eTLeELDWCLdQL 111 (136)
..+|+....+| -||+||..||++|.
T Consensus 93 stqd~~aaa~~~~g~~v~a~~ge~~~ey~~~~~~~ 127 (488)
T 3ond_A 93 STQDHAAAAIARDSAAVFAWKGETLQEYWWCTERA 127 (488)
T ss_dssp CCCHHHHHHHHHHTCEEEECTTCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHH
Confidence 34566666666 47899999999973
No 6
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3
Probab=17.15 E-value=35 Score=29.76 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=17.0
Q ss_pred CChhHHHHhHH-----------HHhhhhhhhhhhh
Q psy7868 88 VPDDAYLKLSI-----------ETMEELDWCLDQL 111 (136)
Q Consensus 88 ~~ee~~~qlA~-----------eTLeELDWCLdQL 111 (136)
.+|+....+|. ||+||..||++|.
T Consensus 83 tqd~~aaal~~~~gi~v~a~~g~~~~ey~~~~~~~ 117 (479)
T 1v8b_A 83 TADYAAAAVSTLENVTVFAWKNETLEEYWWCVESA 117 (479)
T ss_dssp CCHHHHHHHTTSTTEEEECCTTCCHHHHHHHHHHH
T ss_pred chHHHHHHHhhcCCceEEEeCCCCHHHHHHHHHHH
Confidence 45555555554 7899999998864
No 7
>2cmz_A Spike glycoprotein; membrane, lipoprotein, transmembrane, envelope protein, membrane protein; HET: PE4; 2.40A {Vesicular stomatitis indiana virus} SCOP: e.76.1.2 PDB: 2j6j_A*
Probab=16.63 E-value=64 Score=27.72 Aligned_cols=33 Identities=12% Similarity=0.272 Sum_probs=27.8
Q ss_pred HHHHhhhhhhhhhhhhhhhhhcccchhhhcccc
Q psy7868 97 SIETMEELDWCLDQLETIQTHRSVSDMASLKVS 129 (136)
Q Consensus 97 A~eTLeELDWCLdQLETIQT~rSVSeMAS~KFK 129 (136)
..|.+.+-.+|||-|+.|....+||-+-=++|.
T Consensus 274 ~~e~i~~~~~Cld~l~~i~~~~~IS~~dLS~L~ 306 (423)
T 2cmz_A 274 DVERILDYSLCQETWSKIRAGLPISPVDLSYLA 306 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcChhHhhhhC
Confidence 477788899999999999999999976655554
No 8
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Probab=16.38 E-value=37 Score=29.90 Aligned_cols=24 Identities=33% Similarity=0.262 Sum_probs=17.7
Q ss_pred CChhHHHHhH----------HHHhhhhhhhhhhh
Q psy7868 88 VPDDAYLKLS----------IETMEELDWCLDQL 111 (136)
Q Consensus 88 ~~ee~~~qlA----------~eTLeELDWCLdQL 111 (136)
.+|+....+| -||+||..||++|.
T Consensus 82 Tqd~~aaal~~~gi~v~A~kget~eey~~~~~~~ 115 (464)
T 3n58_A 82 TQDHAAAAIAATGTPVFAVKGETLEEYWTYTDQI 115 (464)
T ss_dssp CCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHT
T ss_pred CcHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHH
Confidence 4566666666 46899999999974
No 9
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=16.08 E-value=38 Score=29.41 Aligned_cols=24 Identities=21% Similarity=0.529 Sum_probs=17.7
Q ss_pred CChhHHHHhH----------HHHhhhhhhhhhhh
Q psy7868 88 VPDDAYLKLS----------IETMEELDWCLDQL 111 (136)
Q Consensus 88 ~~ee~~~qlA----------~eTLeELDWCLdQL 111 (136)
.+|+....|| -||.||..||++|.
T Consensus 91 tqd~~aaal~~~gi~v~a~~g~~~~ey~~~~~~~ 124 (435)
T 3gvp_A 91 TLNEVAAALAESGFPVFAWKGESEDDFWWCIDRC 124 (435)
T ss_dssp CCHHHHHHHHHHTCCEECCTTCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHhcCCeEEEecCCCHHHHHHHHHHH
Confidence 4566666666 46889999999973
No 10
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=13.52 E-value=62 Score=24.51 Aligned_cols=14 Identities=50% Similarity=1.002 Sum_probs=10.7
Q ss_pred hhhhhhhhhhhhhh
Q psy7868 103 ELDWCLDQLETIQT 116 (136)
Q Consensus 103 ELDWCLdQLETIQT 116 (136)
+=.|||+-|..|-.
T Consensus 76 ~S~WCl~EL~~i~~ 89 (176)
T 3jrn_A 76 ASSWCLDELVTIMD 89 (176)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHh
Confidence 35899999987743
Done!