Query psy7868
Match_columns 136
No_of_seqs 88 out of 107
Neff 3.7
Searched_HMMs 13730
Date Fri Aug 16 20:53:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7868.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7868hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v8ba2 c.23.12.3 (A:4-234,A:3 25.5 8.6 0.00063 30.4 0.6 25 87-111 79-114 (313)
2 d1regx_ d.58.27.1 (X:) Transla 22.8 13 0.00094 25.9 1.0 7 2-8 43-49 (122)
3 d1bkra_ a.40.1.1 (A:) beta-spe 20.9 16 0.0011 23.5 1.1 26 96-124 2-27 (108)
4 d1sh5a2 a.40.1.1 (A:128-237) A 20.1 20 0.0015 23.2 1.6 15 97-113 7-21 (110)
5 d1ekga_ d.82.2.1 (A:) C-termin 15.1 58 0.0042 21.5 3.0 23 89-111 2-24 (119)
6 d2cmza1 e.76.1.2 (A:1-409) Spi 15.0 34 0.0025 27.4 2.1 32 97-128 274-305 (409)
7 d1rqba1 a.5.7.2 (A:307-474) Tr 14.0 31 0.0023 24.1 1.3 17 26-42 36-52 (168)
8 d1ew4a_ d.82.2.1 (A:) CyaY {Es 13.7 56 0.0041 21.1 2.6 23 89-111 2-24 (106)
9 d2fqla1 d.82.2.1 (A:61-172) C- 11.7 31 0.0023 22.7 0.7 26 86-111 6-31 (112)
10 d1qhda1 a.115.1.2 (A:1-148,A:3 11.7 91 0.0066 22.9 3.4 45 89-133 73-129 (213)
No 1
>d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Probab=25.48 E-value=8.6 Score=30.35 Aligned_cols=25 Identities=36% Similarity=0.606 Sum_probs=17.4
Q ss_pred CCChhHHHHhHH-----------HHhhhhhhhhhhh
Q psy7868 87 AVPDDAYLKLSI-----------ETMEELDWCLDQL 111 (136)
Q Consensus 87 ~~~ee~~~qlA~-----------eTLeELDWCLdQL 111 (136)
..+|+..-.||. ||+||..||++|.
T Consensus 79 STQD~vAAAl~~~~gi~VfAwkGet~eey~~~i~~~ 114 (313)
T d1v8ba2 79 STADYAAAAVSTLENVTVFAWKNETLEEYWWCVESA 114 (313)
T ss_dssp CCCHHHHHHHTTSTTEEEECCTTCCHHHHHHHHHHH
T ss_pred ccchHHHHHhhccCCceEEEecCCCHHHHHHHHHHH
Confidence 345666666653 4789999999854
No 2
>d1regx_ d.58.27.1 (X:) Translational regulator protein regA {Bacteriophage T4 [TaxId: 10665]}
Probab=22.78 E-value=13 Score=25.94 Aligned_cols=7 Identities=71% Similarity=1.355 Sum_probs=5.7
Q ss_pred Cceeeee
Q psy7868 2 GRYYIQH 8 (136)
Q Consensus 2 ~~~~~~~ 8 (136)
|||||-|
T Consensus 43 G~YyIvH 49 (122)
T d1regx_ 43 GLYYIVH 49 (122)
T ss_dssp TEEEEEE
T ss_pred ceEEEEE
Confidence 7888877
No 3
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.91 E-value=16 Score=23.49 Aligned_cols=26 Identities=12% Similarity=0.382 Sum_probs=16.2
Q ss_pred hHHHHhhhhhhhhhhhhhhhhhcccchhh
Q psy7868 96 LSIETMEELDWCLDQLETIQTHRSVSDMA 124 (136)
Q Consensus 96 lA~eTLeELDWCLdQLETIQT~rSVSeMA 124 (136)
-|+++| |.||-.+++.-- ...|.+..
T Consensus 2 s~k~~L--L~W~~~~~~~y~-~v~V~nFs 27 (108)
T d1bkra_ 2 SAKDAL--LLWCQMKTAGYP-NVNIHNFT 27 (108)
T ss_dssp HHHHHH--HHHHHHHTTTCT-TCCCSSSS
T ss_pred CHHHHH--HHHHHHHhcCCC-CcCcccCC
Confidence 366777 889999886321 12455544
No 4
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.10 E-value=20 Score=23.18 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=11.1
Q ss_pred HHHHhhhhhhhhhhhhh
Q psy7868 97 SIETMEELDWCLDQLET 113 (136)
Q Consensus 97 A~eTLeELDWCLdQLET 113 (136)
|++.| |.||-.+++.
T Consensus 7 ~k~~L--L~W~~~~~~~ 21 (110)
T d1sh5a2 7 AKEKL--LLWSQRMVEG 21 (110)
T ss_dssp HHHHH--HHHHHHHTTT
T ss_pred HHHHH--HHHHHHHcCC
Confidence 44556 8899998863
No 5
>d1ekga_ d.82.2.1 (A:) C-terminal domain of frataxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.14 E-value=58 Score=21.52 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=19.2
Q ss_pred ChhHHHHhHHHHhhhhhhhhhhh
Q psy7868 89 PDDAYLKLSIETMEELDWCLDQL 111 (136)
Q Consensus 89 ~ee~~~qlA~eTLeELDWCLdQL 111 (136)
+|.+|.++|.+||+.|.=++|.+
T Consensus 2 ~e~~f~~~ad~~L~~l~~~le~~ 24 (119)
T d1ekga_ 2 DETTYERLAEETLDSLAEFFEDL 24 (119)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999997776653
No 6
>d2cmza1 e.76.1.2 (A:1-409) Spike glycoprotein {Vesicular stomatitis indiana virus [TaxId: 11277]}
Probab=15.03 E-value=34 Score=27.37 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=23.7
Q ss_pred HHHHhhhhhhhhhhhhhhhhhcccchhhhccc
Q psy7868 97 SIETMEELDWCLDQLETIQTHRSVSDMASLKV 128 (136)
Q Consensus 97 A~eTLeELDWCLdQLETIQT~rSVSeMAS~KF 128 (136)
..|-+.+..=|||-||+|.+..+||-.-=+.|
T Consensus 274 ~~e~~~~~~~Cl~tl~ki~~~~~iS~~dLSyL 305 (409)
T d2cmza1 274 DVERILDYSLCQETWSKIRAGLPISPVDLSYL 305 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCChhhhhhh
Confidence 34445666779999999999999996443443
No 7
>d1rqba1 a.5.7.2 (A:307-474) Transcarboxylase 5S subunit, C-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]}
Probab=14.00 E-value=31 Score=24.07 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=13.9
Q ss_pred cCCCcccChhHHHHhhh
Q psy7868 26 HGEDLIVTPFAQILASL 42 (136)
Q Consensus 26 HgeDlIVTPFAQVLASL 42 (136)
=|+-.-|||+.||.--+
T Consensus 36 lG~~~~VTPsSqvVG~~ 52 (168)
T d1rqba1 36 AGFPPLVTPSSQIVGTQ 52 (168)
T ss_dssp TTCCCCCTTHHHHHHHH
T ss_pred cCCCceeCcHHHHHHHH
Confidence 47778899999997654
No 8
>d1ew4a_ d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]}
Probab=13.71 E-value=56 Score=21.13 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=19.3
Q ss_pred ChhHHHHhHHHHhhhhhhhhhhh
Q psy7868 89 PDDAYLKLSIETMEELDWCLDQL 111 (136)
Q Consensus 89 ~ee~~~qlA~eTLeELDWCLdQL 111 (136)
+|.+|.++|-+||+.+.=+||.+
T Consensus 2 ~e~~f~~~ad~~l~~i~~~ld~~ 24 (106)
T d1ew4a_ 2 NDSEFHRLADQLWLTIEERLDDW 24 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhc
Confidence 57799999999999997777654
No 9
>d2fqla1 d.82.2.1 (A:61-172) C-terminal domain of frataxin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.71 E-value=31 Score=22.75 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=21.7
Q ss_pred CCCChhHHHHhHHHHhhhhhhhhhhh
Q psy7868 86 SAVPDDAYLKLSIETMEELDWCLDQL 111 (136)
Q Consensus 86 ~~~~ee~~~qlA~eTLeELDWCLdQL 111 (136)
..++.++|.++|-+||+.+.=.+|.+
T Consensus 6 ~~l~~~ef~~~ad~~L~~i~~~le~~ 31 (112)
T d2fqla1 6 LNLPLEKAHEEADDYLDHLLDSLEEL 31 (112)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999999998777655
No 10
>d1qhda1 a.115.1.2 (A:1-148,A:333-397) vp6, the major capsid protein of group A rotavirus {Bovine rotavirus [TaxId: 10927]}
Probab=11.65 E-value=91 Score=22.91 Aligned_cols=45 Identities=20% Similarity=0.382 Sum_probs=29.9
Q ss_pred ChhHHHHhHHHHhhhhh-----hhhhhhh------hhhhh-cccchhhhcccccccc
Q psy7868 89 PDDAYLKLSIETMEELD-----WCLDQLE------TIQTH-RSVSDMASLKVSQHNQ 133 (136)
Q Consensus 89 ~ee~~~qlA~eTLeELD-----WCLdQLE------TIQT~-rSVSeMAS~KFK~~~~ 133 (136)
-|+.|.+-|+.|++-|- -|.|-+- -||-. .++-.+|+.|||+-|-
T Consensus 73 LD~NYVe~aR~~Idy~~~Fid~VC~DEivREsqRNG~~PQS~~L~~Ls~~kfk~Inf 129 (213)
T d1qhda1 73 LDANYVETARNTIDYFVDFVDNVCMDEMVRESQRNGIAPQSDSLIKLSGIKFKRINF 129 (213)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTTTTSCCSHHHHHHTSGGGGGGCC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCHHHHHHhhcceeEeec
Confidence 58899999999988763 4776332 11110 1233489999999873
Done!