RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7868
(136 letters)
>gnl|CDD|237576 PRK13979, PRK13979, DNA topoisomerase IV subunit A; Provisional.
Length = 957
Score = 28.5 bits (64), Expect = 1.2
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 14/54 (25%)
Query: 1 MGRYYIQHKVYISTQRNKKE---EKNDFHGEDLIVTPFA-------QILASLRS 44
M ++Y++H+ + T+R KKE + FH IV F +I+ ++RS
Sbjct: 361 MLKHYVEHQKEVVTRRTKKELEIAEKRFH----IVEGFIKAIGIMDEIIKTIRS 410
>gnl|CDD|215613 PLN03174, PLN03174, Chalcone-flavanone isomerase-related;
Provisional.
Length = 278
Score = 27.9 bits (62), Expect = 1.5
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 9 KVYISTQRNKKEEKNDFHGEDLIVTPFAQIL---ASLRSVRNNF 49
K+ S + KE +D D+ +T QI+ S+RSVR+ F
Sbjct: 137 KLSASELKGNKEFIDDLMEADIKMTVRLQIVYGKLSIRSVRSAF 180
>gnl|CDD|132868 cd07230, Pat_TGL4-5_like, Triacylglycerol lipase 4 and 5. TGL4 and
TGL5 are triacylglycerol lipases that are involved in
triacylglycerol mobilization and degradation; they are
found in lipid particles. Tgl4 is a functional ortholog
of mammalian adipose TG lipase (ATGL) and is
phosphorylated and activated by cyclin-dependent kinase
1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas
TGL5 is 26% homologus to TGL3. This family includes TGL4
(STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Length = 421
Score = 27.6 bits (62), Expect = 2.3
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 57 TAKILCLTAYNEGIYPQPLCKLLN--INP---VWSAV 88
T +IL +T IY P +LLN P +WSAV
Sbjct: 189 TRRILNITVSPASIYELP--RLLNYITAPNVLIWSAV 223
>gnl|CDD|112322 pfam03498, CDtoxinA, Cytolethal distending toxin A/C family.
Length = 149
Score = 26.7 bits (59), Expect = 3.2
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 48 NFLSLTNVPTAKILCLTAYNEGIYPQPLCKLLNINPVWSAVPDD 91
+ N T CL AY G+ C ++ ++S +P
Sbjct: 52 GTVQFKNPDTGT--CLAAYGNGVIHLKACDDDDLATLFSLIPTT 93
>gnl|CDD|226575 COG4090, COG4090, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 154
Score = 26.7 bits (59), Expect = 3.7
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 16 RNKKEEKNDFHGEDLIVTPFAQILA-SLRSVRNNFLSLTNVPTAKILCLTAY 66
+ EEK F G + TPFA++LA ++R F+ + A+ L LT +
Sbjct: 22 LDLTEEKIVFVGCPGVCTPFAELLAFAVRDKEQYFIPDLDFEKARKLELTDH 73
>gnl|CDD|170022 PRK09630, PRK09630, DNA topoisomerase IV subunit A; Provisional.
Length = 479
Score = 26.8 bits (59), Expect = 4.9
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 5 YIQHKVYISTQRNKKEEKNDFHGEDL---IVTPFAQILASLRSVRNNFLS--LTNVPTAK 59
+I+HK+Y + + + K DL ++ L +L + + + L ++ K
Sbjct: 348 FIKHKLYDTVREMLSKRKTSPSSSDLHNAVLEALTPFLDTLPTPVDKQATAQLASLTIKK 407
Query: 60 ILCLTAYNEGIYPQPLCKL 78
ILC +NE Y + L +
Sbjct: 408 ILC---FNENSYTKELACI 423
>gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha; Provisional.
Length = 762
Score = 26.4 bits (58), Expect = 6.0
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 57 TAKILCLTAYNEGIYPQPLCKLLNINPVWSAVPDDAYLKLSI-ETMEEL 104
TA+ LC +GI P+PL + +P W++ +K++I E M+EL
Sbjct: 342 TAQELCRLQIADGIIPEPLGG-AHADPSWTS----QQIKIAINENMDEL 385
>gnl|CDD|181204 PRK08035, PRK08035, type III secretion system protein SsaQ;
Validated.
Length = 323
Score = 26.3 bits (58), Expect = 6.6
Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 74 PLCKLLNINPVWSAVPDDAYLKLSIETMEELDWC---LDQLETIQ 115
P L N WSA Y L WC L QLE I+
Sbjct: 136 PTAFLRNTLGEWSAERQQIYPALPWVVGLVAGWCHLTLIQLEQIE 180
>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 26.1 bits (58), Expect = 7.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 96 LSIETMEELDWCLDQLETIQTHRSV 120
LS + + EL LDQ+E R V
Sbjct: 25 LSSQVLHELSELLDQVEKDDNVRVV 49
>gnl|CDD|143601 cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642 and related
proteins, members of the nitrilase superfamily (putative
class 13 nitrilases). Uncharacterized subgroup of the
nitrilase superfamily. This superfamily is comprised of
nitrile- or amide-hydrolyzing enzymes and
amide-condensing enzymes, which depend on a Glu-Lys-Cys
catalytic triad. Pyrococcus horikoshii Ph0642 is a
hypothetical protein belonging to this subgroup. This
superfamily has been classified in the literature based
on global and structure based sequence analysis into
thirteen different enzyme classes (referred to as 1-13).
This subgroup was classified as belonging to class 13,
which represents proteins that at the time were
difficult to place in a distinct similarity group.
Members of this superfamily generally form homomeric
complexes, the basic building block of which is a
homodimer.
Length = 259
Score = 25.7 bits (57), Expect = 7.7
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 6 IQHKVYISTQRNKKEEKND-----FHGEDLIVTPFAQILASL 42
++++V+ T E+ F G+ I +P ++LA
Sbjct: 181 LENRVFTITANRIGTEERGGETLRFIGKSQITSPKGEVLARA 222
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.132 0.394
Gapped
Lambda K H
0.267 0.0810 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,547,863
Number of extensions: 549290
Number of successful extensions: 451
Number of sequences better than 10.0: 1
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 16
Length of query: 136
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 49
Effective length of database: 7,078,804
Effective search space: 346861396
Effective search space used: 346861396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.4 bits)