RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7868
         (136 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.1 bits (64), Expect = 0.50
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 10/44 (22%)

Query: 3   RYYIQHKVYISTQRNKKEEK----NDF---HGEDLIVTPFAQIL 39
           ++Y   K YI     K E       DF     E+LI + +  +L
Sbjct: 528 KFY---KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.9 bits (64), Expect = 0.64
 Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 21/67 (31%)

Query: 26  HGED-----LIVT--PFAQILASLRSVRNN-------FLSLTNVPTAKILCLTAYNEGIY 71
           + E      L ++     Q+   +    ++        +SL N     ++       G  
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS------G-P 382

Query: 72  PQPLCKL 78
           PQ L  L
Sbjct: 383 PQSLYGL 389



 Score = 28.1 bits (62), Expect = 1.1
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 20/67 (29%)

Query: 28  EDLIVTPFAQILASLRSVRNNFLSLTNVPTAKILCLTAYNEGIYPQPLCKLLNINPVWSA 87
            DLI    A+ L+ L         +     A+ +    + +G+    + + L  NP  S 
Sbjct: 185 GDLIKF-SAETLSEL---------IRTTLDAEKV----FTQGL---NILEWLE-NP--SN 224

Query: 88  VPDDAYL 94
            PD  YL
Sbjct: 225 TPDKDYL 231



 Score = 25.8 bits (56), Expect = 6.8
 Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 17/72 (23%)

Query: 11  YISTQRNKKEEKNDFHGEDLIVTPFAQIL-ASLRSVRNNFLSLTNVPTAKILCLTAYNEG 69
           Y+S+     +           V  F Q+L   L    N +L   ++       L A    
Sbjct: 67  YVSSLVEPSK-----------VGQFDQVLNLCLTEFENCYLEGNDIHA-----LAAKLLQ 110

Query: 70  IYPQPLCKLLNI 81
                L K   +
Sbjct: 111 ENDTTLVKTKEL 122


>2cmz_A Spike glycoprotein; membrane, lipoprotein, transmembrane, envelope
           protein, membrane protein; HET: PE4; 2.40A {Vesicular
           stomatitis indiana virus} SCOP: e.76.1.2 PDB: 2j6j_A*
          Length = 423

 Score = 28.2 bits (62), Expect = 0.95
 Identities = 6/34 (17%), Positives = 13/34 (38%)

Query: 90  DDAYLKLSIETMEELDWCLDQLETIQTHRSVSDM 123
            D  L   +E + +   C +    I+    +S +
Sbjct: 267 VDVSLIQDVERILDYSLCQETWSKIRAGLPISPV 300


>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000,
           structural genomics/proteomics initiative, RSGI, NPPSFA;
           HET: 3PG; 2.10A {Pyrococcus horikoshii}
          Length = 410

 Score = 26.4 bits (59), Expect = 3.1
 Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 1/26 (3%)

Query: 17  NKKEEKNDFHGEDLIVTPFAQILASL 42
           + +E KN    E+   T   + L+ +
Sbjct: 116 SAEEVKNK-PIEECEKTFLVKKLSKV 140


>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national
           institute of allergy AN infectious diseases; HET: ADP;
           2.30A {Francisella tularensis subsp} PDB: 4ehj_A
          Length = 395

 Score = 25.5 bits (57), Expect = 6.1
 Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 8/26 (30%)

Query: 17  NKKEEKNDFHGEDLIVTPFAQILASL 42
           N  E+K+    +D      ++ +ASL
Sbjct: 118 NSGEKKST---DD-----LSKKIASL 135


>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
           PSI-2, protein structure initiative; 2.50A {Pseudomonas
           syringae PV}
          Length = 232

 Score = 25.3 bits (56), Expect = 7.5
 Identities = 5/18 (27%), Positives = 9/18 (50%)

Query: 96  LSIETMEELDWCLDQLET 113
           +S + +   +  LDQ E 
Sbjct: 29  ISPDVIIAFNAALDQAEK 46


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.132    0.394 

Gapped
Lambda     K      H
   0.267   0.0852    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,929,555
Number of extensions: 97035
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 10
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.6 bits)