RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7868
         (136 letters)



>d2cmza1 e.76.1.2 (A:1-409) Spike glycoprotein {Vesicular stomatitis
           indiana virus [TaxId: 11277]}
          Length = 409

 Score = 29.1 bits (65), Expect = 0.18
 Identities = 6/32 (18%), Positives = 12/32 (37%)

Query: 90  DDAYLKLSIETMEELDWCLDQLETIQTHRSVS 121
            D  L   +E + +   C +    I+    +S
Sbjct: 267 VDVSLIQDVERILDYSLCQETWSKIRAGLPIS 298


>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC
           {Escherichia coli [TaxId: 562]}
          Length = 354

 Score = 24.0 bits (50), Expect = 9.6
 Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 10/68 (14%)

Query: 48  NFLSLTNVPTAKILCLTAYNEGIYPQPLCKLLNINPVWSAVPDDAYLKLSIETMEELDWC 107
           N++ L     +  +  + +++GI          +            L++++ T EE    
Sbjct: 296 NYI-LARFKASSAVFKSLWDQGII---------LRDQNKQPSLSGCLRITVGTREESQRV 345

Query: 108 LDQLETIQ 115
           +D L   Q
Sbjct: 346 IDALRAEQ 353


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.394 

Gapped
Lambda     K      H
   0.267   0.0596    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 470,495
Number of extensions: 18885
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 4
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.6 bits)