BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7875
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 19/140 (13%)
Query: 29 GGKYRGLFQAVTTIVKEEGVRALWKGHVPAQSLSITYGCVQFATFELMSQYISAG---TP 85
G +Y+ +A TI +EEG+R LWKG P + + C + T++L+ + T
Sbjct: 141 GRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTD 200
Query: 86 TILTLVSSDFLCGILGSTIAT----------------MYSGTLNAFYLICRDKPTILFRG 129
+ +S F G + IA+ +S A ++ ++ P ++G
Sbjct: 201 DLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKG 260
Query: 130 LTPTLLQVAPQGGIQFTVYN 149
P+ L++ + F Y
Sbjct: 261 FMPSFLRLGSWNVVMFVTYE 280
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 30 GKYRGLFQAVTTIVKEEGVRALWKGHVPAQSLSITYGCVQFATFE-----LMSQYISAGT 84
G+Y T++++EG RA +KG +P+ ++ V F T+E LM+ Y S
Sbjct: 236 GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSREA 295
Query: 85 P 85
P
Sbjct: 296 P 296
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 89/226 (39%), Gaps = 48/226 (21%)
Query: 17 LMLQVESFDPQLGG--KYRGLFQAVTTIVKEEGVRALWKGHV-------PAQSLSIT--- 64
L+LQV+ Q+ +Y+G+ V I KE+G + W+G++ P Q+L+
Sbjct: 33 LLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKD 92
Query: 65 -YGCVQFATFELMSQYI-----------SAGTPTILTLVSSDF----LCGILGSTIATM- 107
Y + + Q+ +AG ++ + DF L +G A
Sbjct: 93 KYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQRE 152
Query: 108 YSGTLNAFYLICR-DKPTILFRGLTPTLLQVAPQGGIQFTVYNIXXXXXXXXXXXXXXXX 166
++G N I + D L++G ++ + F VY+
Sbjct: 153 FTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML----------- 201
Query: 167 XXNPDPQTERRVLSPLGSLMAGSVAGLTSKVAIYPLDLAKKRIQVQ 212
PDP+ ++S + + +VAGL S YP D ++R+ +Q
Sbjct: 202 ---PDPKNVHIIVSWMIAQTVTAVAGLVS----YPFDTVRRRMMMQ 240
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 183 GSLMAGSVAGLTSKVAIYPLDLAKKRIQVQ-GFDDARRDF 221
G+L +G AG TS +YPLD A+ R+ G A+R+F
Sbjct: 114 GNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREF 153
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 177 RVLSPLGSLMAGSVAGLTSKVAIYPLDLAKKRIQVQ 212
+ LS L +AG VA SK A+ P++ K +QVQ
Sbjct: 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQ 38
>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp
Domain And Human Osbp Ffat Motif
Length = 130
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 11 STCQDYLMLQVESFDPQLGGKYRGLFQAVTTIVKEEGVRALWKGHVPAQSLSITYGCVQF 70
ST +MLQ +DP K++ + Q + + A+WK P + + CV
Sbjct: 67 STVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLRCV-- 124
Query: 71 ATFELMSQ 78
FE+ ++
Sbjct: 125 --FEMPNE 130
>pdb|2WE7|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rv0376c
Homologue From Mycobacterium Smegmatis
pdb|2WE7|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Rv0376c
Homologue From Mycobacterium Smegmatis
Length = 386
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 60 SLSITYGCVQFATFELMSQYISAGTPTI 87
S S++ GCV+ A ++L ++ ++ GTP +
Sbjct: 51 SGSVSGGCVEGAVYDLATEVVATGTPVL 78
>pdb|2WE8|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rv0376c
Homologue From Mycobacterium Smegmatis
pdb|2WE8|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Rv0376c
Homologue From Mycobacterium Smegmatis
Length = 386
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 60 SLSITYGCVQFATFELMSQYISAGTPTI 87
S S++ GCV+ A ++L ++ ++ GTP +
Sbjct: 51 SGSVSGGCVEGAVYDLATEVVATGTPVL 78
>pdb|2JGD|B Chain B, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 33 RGLFQAVTTIVKEEGVRALWKGHVPAQSLSITYGCVQFATFE-----LMSQYISAG 83
+G F+ +++ EE V A G+ A+ ++T QF F ++ Q+IS+G
Sbjct: 649 QGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSG 704
>pdb|2JGD|A Chain A, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 33 RGLFQAVTTIVKEEGVRALWKGHVPAQSLSITYGCVQFATFE-----LMSQYISAG 83
+G F+ +++ EE V A G+ A+ ++T QF F ++ Q+IS+G
Sbjct: 649 QGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSG 704
>pdb|2J3H|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3H|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3I|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3I|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3J|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3J|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3K|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
pdb|2J3K|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
Length = 345
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 14/125 (11%)
Query: 1 MCARQLYLIRSTCQDYLMLQVESFDPQLGGKYRGLFQAVT--TIVKEEGV-RALWKGHVP 57
+ + LYL +C Y+ +++ DP L QA T ++ GV R + GH
Sbjct: 41 VLVKNLYL---SCDPYMRIRMGKPDPSTAA----LAQAYTPGQPIQGYGVSRIIESGHPD 93
Query: 58 AQSLSITYGCVQFATFELMSQYISAGTPTILTLVSSDFLCGILGSTIATMYSGTLNAFYL 117
+ + +G V + + +++ A T V + G+LG T Y+G FY
Sbjct: 94 YKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPGMTAYAG----FYE 149
Query: 118 ICRDK 122
+C K
Sbjct: 150 VCSPK 154
>pdb|1DB2|A Chain A, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
pdb|1DB2|B Chain B, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
Length = 377
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 221 FGKETESDLRKPSLGNTAAFDSRRPSVADTSEGSRSQTPH 260
F ETE DLRKP L N D RP AD + S + H
Sbjct: 276 FSLETEVDLRKP-LENLGMTDMFRPFQADFTSLSDQEPLH 314
>pdb|3EOX|A Chain A, High Quality Structure Of Cleaved Pai-1-Stab
Length = 379
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 221 FGKETESDLRKPSLGNTAAFDSRRPSVADTSEGSRSQTPH 260
F ETE DLRKP L N D RP AD + S + H
Sbjct: 278 FSLETEVDLRKP-LENLGMTDMFRPFQADFTSLSDQEPLH 316
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,269,066
Number of Sequences: 62578
Number of extensions: 268608
Number of successful extensions: 605
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 593
Number of HSP's gapped (non-prelim): 18
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)