Query psy7875
Match_columns 279
No_of_seqs 146 out of 1976
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 21:02:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7875.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7875hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 1E-45 3.6E-50 318.7 12.9 242 2-265 24-295 (297)
2 2lck_A Mitochondrial uncouplin 100.0 5.2E-45 1.8E-49 315.2 8.4 241 1-267 17-286 (303)
3 2lck_A Mitochondrial uncouplin 99.9 2.1E-26 7E-31 198.6 7.6 150 2-159 121-290 (303)
4 1okc_A ADP, ATP carrier protei 99.9 6.9E-26 2.4E-30 194.8 8.4 163 90-264 6-198 (297)
5 3ogk_Q JAZ1 incomplete degron 79.8 1.1 3.9E-05 21.5 1.8 16 264-279 6-21 (22)
6 3ogl_Q JAZ1 incomplete degron 45.6 8.7 0.0003 18.1 1.0 11 264-274 11-21 (21)
7 1xkm_B Distinctin chain B; por 38.2 20 0.00069 17.1 1.7 16 263-278 9-24 (26)
8 2bnk_A Early protein GP16.7; D 28.2 17 0.00058 21.9 0.6 44 4-56 23-66 (67)
9 2acm_A Mucin-1; auto-catalytic 20.2 18 0.00062 22.0 -0.4 20 33-52 40-59 (66)
10 1bm4_A Protein (moloney murine 18.3 98 0.0034 16.2 2.2 25 255-279 7-31 (32)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1e-45 Score=318.72 Aligned_cols=242 Identities=16% Similarity=0.214 Sum_probs=203.5
Q ss_pred cccchhhhcccccceeeeccccCCCCCCCCCCCHHHHHHHHHHhhCccccccCchHHHHHHhhHHhhHHhHHHHHHHHHh
Q psy7875 2 CARQLYLIRSTCQDYLMLQVESFDPQLGGKYRGLFQAVTTIVKEEGVRALWKGHVPAQSLSITYGCVQFATFELMSQYIS 81 (279)
Q Consensus 2 ~~~Pld~ik~~~ktr~Q~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~~~f~~~~~~k~~l~ 81 (279)
++||+|+|| +|+|++...........|+++++++++|+++||++|||||+.+++++.+|.++++|++||.+|+.+.
T Consensus 24 ~~~Pld~vK----trlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~ 99 (297)
T 1okc_A 24 AVAPIERVK----LLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFL 99 (297)
T ss_dssp HTHHHHHHH----HHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHH----HHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999 9999986532222345789999999999999999999999999999999999999999999999654
Q ss_pred cCCC-CCC--cchHHHHHHHHHHHHHHhh------------------------cccHHHHHHHHHHhc-ccccccchhHH
Q psy7875 82 AGTP-TIL--TLVSSDFLCGILGSTIATM------------------------YSGTLNAFYLICRDK-PTILFRGLTPT 133 (279)
Q Consensus 82 ~~~~-~~~--~~~~~~~~ag~~ag~~~~~------------------------~~~~~~~~~~i~~~e-~~glyrG~~~~ 133 (279)
+... ... .+....+++|++||+++++ |.+.++++++++++| ++|||||+.++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~ 179 (297)
T 1okc_A 100 GGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVS 179 (297)
T ss_dssp TTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHH
T ss_pred cccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHH
Confidence 3222 111 2345678899999988877 468999999999999 99999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhccccccCCcCCCCCCCCCcccCCChhHHHHHHhHHhHhHhhhcccHHHHHHHHHhcC
Q psy7875 134 LLQVAPQGGIQFTVYNILSHLFSLSDYLSSSSAASNPDPQTERRVLSPLGSLMAGSVAGLTSKVAIYPLDLAKKRIQVQG 213 (279)
Q Consensus 134 ~l~~~~~~~~~f~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~vt~Pld~vktr~q~~~ 213 (279)
+++.++..+++|.+||.+++.+.+.. ..+....+++|++||++++++++|+|+||+|||++.
T Consensus 180 l~~~~~~~~~~f~~ye~~k~~~~~~~------------------~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~ 241 (297)
T 1okc_A 180 VQGIIIYRAAYFGVYDTAKGMLPDPK------------------NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQS 241 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCGGG------------------CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC------------------CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcC
Confidence 99999999999999999999764422 256788899999999999999999999999999875
Q ss_pred CCc-cccccccccccce-eccccchhhhccCccccccccccCccccccccccHH
Q psy7875 214 FDD-ARRDFGKETESDL-RKPSLGNTAAFDSRRPSVADTSEGSRSQTPHSDTRS 265 (279)
Q Consensus 214 ~~~-~~~~~~~~~~~~~-~~~~~G~~gly~G~~p~~~r~~~~s~~~~~~~~~~~ 265 (279)
... ....|.++.+|+. +.++||++|||||+.|+++|.+++++.|+.+|..++
T Consensus 242 ~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~~~~~~f~~ye~~k~ 295 (297)
T 1okc_A 242 GRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIKK 295 (297)
T ss_dssp TCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhhccceeeehHHHHHHh
Confidence 432 3446888888887 678899999999999999998777888887776554
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=5.2e-45 Score=315.16 Aligned_cols=241 Identities=19% Similarity=0.283 Sum_probs=206.0
Q ss_pred CcccchhhhcccccceeeeccccCCC---CCCCCCCCHHHHHHHHHHhhCccccccCchHHHHHHhhHHhhHHhHHHHHH
Q psy7875 1 MCARQLYLIRSTCQDYLMLQVESFDP---QLGGKYRGLFQAVTTIVKEEGVRALWKGHVPAQSLSITYGCVQFATFELMS 77 (279)
Q Consensus 1 l~~~Pld~ik~~~ktr~Q~~~~~~~~---~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~~~f~~~~~~k 77 (279)
+++||||+|| +|+|++...... .....|+++++++++|+++||++|||||+.+++++.+|.++++|++||.+|
T Consensus 17 ~~~~Pld~iK----trlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k 92 (303)
T 2lck_A 17 LITFPLDTAK----VRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVK 92 (303)
T ss_dssp HTTHHHHHHH----HHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred HHcCcHHHHH----HHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999 999998642110 124578999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCcchHHHHHHHHHHHHHHhh-----------------------cccHHHHHHHHHHhc-ccccccchhHH
Q psy7875 78 QYISAGTPTILTLVSSDFLCGILGSTIATM-----------------------YSGTLNAFYLICRDK-PTILFRGLTPT 133 (279)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~ag~~ag~~~~~-----------------------~~~~~~~~~~i~~~e-~~glyrG~~~~ 133 (279)
+.+.+... ..+....+++|++||+++++ |.+.++++++|+++| ++|||||+.++
T Consensus 93 ~~~~~~~~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~ 170 (303)
T 2lck_A 93 QFYTKGSE--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPN 170 (303)
T ss_dssp HHHSCCCS--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHhcCCc--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHH
Confidence 99876421 35677889999999999877 478999999999999 99999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhccccccCCcCCCCCCCCCcccCCChhHHHHHHhHHhHhHhhhcccHHHHHHHHHhcC
Q psy7875 134 LLQVAPQGGIQFTVYNILSHLFSLSDYLSSSSAASNPDPQTERRVLSPLGSLMAGSVAGLTSKVAIYPLDLAKKRIQVQG 213 (279)
Q Consensus 134 ~l~~~~~~~~~f~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~vt~Pld~vktr~q~~~ 213 (279)
+++.++..+++|.+||.+++.+.+... ...+....+++|++||++++++++|+|+||+|||++.
T Consensus 171 l~~~~~~~~i~f~~ye~~k~~l~~~~~----------------~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~ 234 (303)
T 2lck_A 171 VARNAIVNCAELVTYDLIKDTLLKANL----------------MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSA 234 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTTTS----------------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC----------------CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcc
Confidence 999999999999999999998865322 1356778999999999999999999999999999976
Q ss_pred CCccccccccccccce-eccccchhhhccCccccccccccCc-cccccccccHHHH
Q psy7875 214 FDDARRDFGKETESDL-RKPSLGNTAAFDSRRPSVADTSEGS-RSQTPHSDTRSYR 267 (279)
Q Consensus 214 ~~~~~~~~~~~~~~~~-~~~~~G~~gly~G~~p~~~r~~~~s-~~~~~~~~~~~~~ 267 (279)
. ..|.++.+|+. +.++||++|||||+.|+++|.+|++ +.|..+|..+.++
T Consensus 235 ~----~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l 286 (303)
T 2lck_A 235 L----GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRAL 286 (303)
T ss_dssp S----SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred c----cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3 24778888887 6788999999999999999999985 6777666555443
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.93 E-value=2.1e-26 Score=198.64 Aligned_cols=150 Identities=20% Similarity=0.408 Sum_probs=132.7
Q ss_pred cccchhhhcccccceeeeccccCCCCCCCCCCCHHHHHHHHHHhhCccccccCchHHHHHHhhHHhhHHhHHHHHHHHHh
Q psy7875 2 CARQLYLIRSTCQDYLMLQVESFDPQLGGKYRGLFQAVTTIVKEEGVRALWKGHVPAQSLSITYGCVQFATFELMSQYIS 81 (279)
Q Consensus 2 ~~~Pld~ik~~~ktr~Q~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~~~f~~~~~~k~~l~ 81 (279)
++||+|+|| +|+|++... .....|.++++++++|+++||++|||||+.+++++.+|.++++|.+||.+|+.+.
T Consensus 121 ~~~Pld~vk----trlq~~~~~---~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~ 193 (303)
T 2lck_A 121 VAQPTDVVK----VRFQAQARA---GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLL 193 (303)
T ss_dssp HSCHHHHHH----HHHHHSCSC---CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HcCcHHHHH----HHHhccccc---CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999 999998642 1345789999999999999999999999999999999999999999999999887
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHHhh-------------------cccHHHHHHHHHHhc-ccccccchhHHHHHHhhhh
Q psy7875 82 AGTPTILTLVSSDFLCGILGSTIATM-------------------YSGTLNAFYLICRDK-PTILFRGLTPTLLQVAPQG 141 (279)
Q Consensus 82 ~~~~~~~~~~~~~~~ag~~ag~~~~~-------------------~~~~~~~~~~i~~~e-~~glyrG~~~~~l~~~~~~ 141 (279)
+... ...+....+++|++||+++++ |.+.++|+++++++| ++|||||+.+++++.++..
T Consensus 194 ~~~~-~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~ 272 (303)
T 2lck_A 194 KANL-MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWN 272 (303)
T ss_dssp TTTS-CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHH
T ss_pred hccC-CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHH
Confidence 5432 234566788999999988887 789999999999999 9999999999999999999
Q ss_pred hHHHHHHHHHHHHHhccc
Q psy7875 142 GIQFTVYNILSHLFSLSD 159 (279)
Q Consensus 142 ~~~f~~~e~~~~~~~~~~ 159 (279)
+++|.+||.+++.+.+..
T Consensus 273 ~i~f~~ye~~k~~l~~~~ 290 (303)
T 2lck_A 273 VVMFVTYEQLKRALMAAY 290 (303)
T ss_dssp HHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999998776544
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.92 E-value=6.9e-26 Score=194.82 Aligned_cols=163 Identities=20% Similarity=0.241 Sum_probs=130.5
Q ss_pred chHHHHHHHHHHHHHHhh--------------------------cccHHHHHHHHHHhc-ccccccchhHHHHHHhhhhh
Q psy7875 90 LVSSDFLCGILGSTIATM--------------------------YSGTLNAFYLICRDK-PTILFRGLTPTLLQVAPQGG 142 (279)
Q Consensus 90 ~~~~~~~ag~~ag~~~~~--------------------------~~~~~~~~~~i~~~e-~~glyrG~~~~~l~~~~~~~ 142 (279)
+....+++|++||+++.+ |+|.++++++++++| ++|||||+.+.+++.++..+
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 85 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA 85 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHH
Confidence 455677788888877776 468999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccccCCcCCCCCCCCCcccCCChhHHHHHHhHHhHhHhhhcccHHHHHHHHHhcCCCc-ccccc
Q psy7875 143 IQFTVYNILSHLFSLSDYLSSSSAASNPDPQTERRVLSPLGSLMAGSVAGLTSKVAIYPLDLAKKRIQVQGFDD-ARRDF 221 (279)
Q Consensus 143 ~~f~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~vt~Pld~vktr~q~~~~~~-~~~~~ 221 (279)
++|.+||.+++.+..... .+..........+++|++||++++++++|+|+||+|||++.... ....|
T Consensus 86 ~~f~~ye~~k~~~~~~~~------------~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~ 153 (297)
T 1okc_A 86 LNFAFKDKYKQIFLGGVD------------RHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREF 153 (297)
T ss_dssp HHHHHHHHHHHHHHTTCC------------TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSC
T ss_pred HHHHHHHHHHHHhccccC------------cccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCC
Confidence 999999999996543221 00011123567899999999999999999999999999985432 24567
Q ss_pred ccccccce-eccccchhhhccCccccccccccCc-cccccccccH
Q psy7875 222 GKETESDL-RKPSLGNTAAFDSRRPSVADTSEGS-RSQTPHSDTR 264 (279)
Q Consensus 222 ~~~~~~~~-~~~~~G~~gly~G~~p~~~r~~~~s-~~~~~~~~~~ 264 (279)
.+..+++. +.++||+.|||||+.|+++|.+|.+ +.|..+|..+
T Consensus 154 ~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k 198 (297)
T 1okc_A 154 TGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAK 198 (297)
T ss_dssp SSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 78888877 6788999999999999999999975 5666554433
No 5
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=79.79 E-value=1.1 Score=21.52 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=13.4
Q ss_pred HHHHHHhhhhhhccCC
Q psy7875 264 RSYRERLKDRIQTVKP 279 (279)
Q Consensus 264 ~~~~~~~~~~~~~~~~ 279 (279)
+.|+|+.|||+.+..|
T Consensus 6 qRFleKRk~R~~~~~P 21 (22)
T 3ogk_Q 6 HRFLEKRKDRVTSKAP 21 (26)
T ss_pred HHHHHHHHHHhhccCC
Confidence 5689999999987665
No 6
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=45.63 E-value=8.7 Score=18.14 Aligned_cols=11 Identities=36% Similarity=0.700 Sum_probs=7.8
Q ss_pred HHHHHHhhhhh.....
Q psy7875 264 RSYRERLKDRI..... 274 (279)
Q Consensus 264 ~~~~~~~~~~~..... 274 (279)
+.|+|+.|||+
T Consensus 11 qRFleKRk~R~..... 21 (21)
T 3ogl_Q 11 HRFLEKRKDRVxxxxx 26 (26)
T ss_pred HHHHHHhhccC.....
Confidence 45778888775
No 7
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=38.17 E-value=20 Score=17.09 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=12.4
Q ss_pred cHHHHHHhhhhhhccC
Q psy7875 263 TRSYRERLKDRIQTVK 278 (279)
Q Consensus 263 ~~~~~~~~~~~~~~~~ 278 (279)
-|.|+|.|+..++.-|
T Consensus 9 arkyleqlhrklknck 24 (26)
T 1xkm_B 9 ARKYLEQLHRKLKNCK 24 (26)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 4789999998887654
No 8
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=28.24 E-value=17 Score=21.94 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=30.4
Q ss_pred cchhhhcccccceeeeccccCCCCCCCCCCCHHHHHHHHHHhhCccccccCch
Q psy7875 4 RQLYLIRSTCQDYLMLQVESFDPQLGGKYRGLFQAVTTIVKEEGVRALWKGHV 56 (279)
Q Consensus 4 ~Pld~ik~~~ktr~Q~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~ 56 (279)
-|+|.|-|-+..++|+..+ ..+....-+.-|+-|--+.+|||..
T Consensus 23 IP~DIIEdl~~~~L~te~E---------VmnYiEnqR~~WKLEN~KKly~g~l 66 (67)
T 2bnk_A 23 IPSDIIEDLVNQRLQSEQE---------VLNYIETQRTYWKLENQKKLYRGSL 66 (67)
T ss_dssp CCHHHHHHHHTTCCCCSHH---------HHHHHHHHHHHHHHHTTSCCCCSCC
T ss_pred CcHHHHHHHHHHhhhhHHH---------HHHHHHhhHhHHhhhhhHHHHhccc
Confidence 4888887776677776542 1344555566788888889999963
No 9
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=20.21 E-value=18 Score=22.00 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHhhCccccc
Q psy7875 33 RGLFQAVTTIVKEEGVRALW 52 (279)
Q Consensus 33 ~~~~~~~~~i~~~eG~~gly 52 (279)
+++.+.+..|++++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 35678888999999999875
No 10
>1bm4_A Protein (moloney murine leukemia virus capsid); moloney murine leukemia virus capsid protein, momlv, MU-MLV, MHR, major homology region; NMR {Synthetic} SCOP: j.47.1.1
Probab=18.30 E-value=98 Score=16.19 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=17.5
Q ss_pred cccccccccHHHHHHhhhhhhccCC
Q psy7875 255 RSQTPHSDTRSYRERLKDRIQTVKP 279 (279)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (279)
+...+-|-...++|||.|.-..+-|
T Consensus 7 V~Qg~~EsPs~FlerL~eayR~yTP 31 (32)
T 1bm4_A 7 ITQGPNESPSAFLERLKEAYRRYTP 31 (32)
T ss_dssp TTTTGGGHHHHHHHHHHHHHHHTSC
T ss_pred HHhCCCCChHHHHHHHHHHHHhcCC
Confidence 4455566677899999987766554
Done!