RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7875
(279 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 57.6 bits (140), Expect = 6e-11
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 29 GGKYRGLFQAVTTIVKEEGVRALWKGHVPAQSLSITYGCVQFATFELMSQYIS 81
KY+G+ I KEEG+R L+KG +P + F T+E + + +
Sbjct: 41 SRKYKGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLL 93
Score = 44.6 bits (106), Expect = 3e-06
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 179 LSPLGSLMAGSVAGLTSKVAIYPLDLAKKRIQVQG 213
LS L SL+AG +AG + YPLD+ K R+Q
Sbjct: 3 LSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSA 37
Score = 43.4 bits (103), Expect = 6e-06
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 106 TMYSGTLNAFYLICRDK-PTILFRGLTPTLLQVAPQGGIQFTVYNILSHLFS 156
Y G L+ F I +++ L++GL P LL+VAP I F Y L L
Sbjct: 42 RKYKGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLL 93
>gnl|CDD|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family. The
proteins of the Trk family are derived from
Gram-negative and Gram-positive bacteria, yeast and
wheat. The proteins of E. coli K12 TrkH and TrkG as well
as several yeast proteins have been functionally
characterized.The E. coli TrkH and TrkG proteins are
complexed to two peripheral membrane proteins, TrkA, an
NAD-binding protein, and TrkE, an ATP-binding protein.
This complex forms the potassium uptake system. This
family is specific for the eukaryotic Trk system
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 800
Score = 31.5 bits (71), Expect = 0.53
Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Query: 154 LFSLSDYLSSSSAASNPDPQTERRVLSPLGSLMAGSVAGLTSKVAIYPLDLAKKRIQVQG 213
LFS ++PD +++ R + L A + P DL + + +QG
Sbjct: 186 LFSGEFVKRDEPDQNSPDVKSDTRADESISDLEFEKFAKRRGSRDVDPEDLYRSIMMLQG 245
Query: 214 FDDARRDFGKETESDLRKPSLGNTAAFDSRRPSVADTSEGSRSQTPHSDTRSYRERLKDR 273
+ R+ S + S + RRPS +D S+S T D +S+ + ++ R
Sbjct: 246 IHERIRE-KSSANSRSDERSSESIQEQVERRPSTSDIERNSQSLTRRYDDKSFDKAVRLR 304
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 29.7 bits (67), Expect = 1.5
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 17 LMLQVESFDPQL-GGK---YRGLFQAVTTIVKEEGVRALWKGHV 56
+++Q + P++ GK Y G+ + KE+GV +LW+G+
Sbjct: 33 MLIQTQDSIPEIKSGKVPRYSGIVNCFRRVSKEQGVLSLWRGNT 76
Score = 29.4 bits (66), Expect = 2.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 185 LMAGSVAGLTSKVAIYPLDLAKKRIQVQGFDDARRDF 221
+++G +AG +S + +YPLD A+ R+ R+F
Sbjct: 117 ILSGGLAGASSLLIVYPLDFARTRLASDIGKGGDREF 153
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 28.7 bits (64), Expect = 3.4
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 123 PTILFRGLTPTLLQVAPQGGIQFTVYNILSHLFSLSDYLSSSSAASNPDPQTERRVLSPL 182
L+ G+ PTL+ P + Y + L L++Y + S +
Sbjct: 42 IKKLYSGILPTLVGTVPASAFFYCFYELSKKL--LTEYRENISKTNL------------- 86
Query: 183 GSLMAGSVAGLTSKVAIYPLDLAKKRIQVQG 213
L++ S+A +T+ + P ++ K+ +QV G
Sbjct: 87 -YLISTSIAEITACIVRLPFEIVKQNMQVSG 116
>gnl|CDD|119354 cd02875, GH18_chitobiase, Chitobiase (also known as
di-N-acetylchitobiase) is a lysosomal glycosidase that
hydrolyzes the reducing-end N-acetylglucosamine from the
chitobiose core of oligosaccharides during the ordered
degradation of asparagine-linked glycoproteins in
eukaryotes. Chitobiase can only do so if the asparagine
that joins the oligosaccharide to protein is previously
removed by a glycosylasparaginase. Chitobiase is
therefore the final step in the lysosomal degradation of
the protein/carbohydrate linkage component of
asparagine-linked glycoproteins. The catalytic domain of
chitobiase is an eight-stranded alpha/beta barrel fold
similar to that of other family 18 glycosyl hydrolases
such as hevamine and chitotriosidase.
Length = 358
Score = 28.6 bits (64), Expect = 3.6
Identities = 19/88 (21%), Positives = 26/88 (29%), Gaps = 26/88 (29%)
Query: 44 KEEGVRALWKGHVPAQSLSITYGCVQFATFELMSQYISAGTPTILTLVSSDFLCGI---- 99
+GVR + KG VP + +S Y + + L S F+ GI
Sbjct: 74 HSKGVRLVLKGDVPLEQIS-------------NPTYRTQWIQQKVELAKSQFMDGINIDI 120
Query: 100 -----LGSTIATMY----SGTLNAFYLI 118
GS T AF
Sbjct: 121 EQPITKGSPEYYALTELVKETTKAFKKE 148
>gnl|CDD|239006 cd02051, PAI-1_nexin-1, Plasminogen activator inhibitor-1_like.
Plasminogen activator inhibitor-1 (PAI-1) is the
primary, fast-acting inhibitor of plasminogen
activators. It is often bound to vitronectin, an
abundant component of the extracellular matrix in many
tissues. Protease nexin-1 is a potent serpin able to
inhibit thrombin, plasmin, and plasminogen activators.
PAI-1 and nexin-1 are members of the serpin superfamily
and represent clade E. In general, SERine Proteinase
INhibitors (serpins) exhibit conformational polymorphism
shifting from native to cleaved, latent, delta, or
polymorphic forms. Many serpins, such as antitrypsin
and antichymotrypsin, function as serine protease
inhibitors which regulate blood coagulation cascades.
Non-inhibitory serpins perform many diverse functions
such as chaperoning proteins or transporting hormones.
Length = 377
Score = 28.7 bits (64), Expect = 3.7
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Query: 221 FGKETESDLRKP--SLGNTAAFDSRRPSVADTSEGSRSQTPH 260
F E E+DL++P +LG T FD S A+ ++ SRS++ H
Sbjct: 276 FTVEAETDLKEPLKALGITDMFD---QSKANFTKISRSESLH 314
>gnl|CDD|234381 TIGR03888, nitrile_beta, nitrile hydratase, beta subunit. Members
of this protein family are the beta subunit of nitrile
hydratase. The alpha subunit is represented by model
TIGR01323. While nitrile hydratase is given the specific
EC number 4.2.1.84, nitriles are a class of compounds,
and one genome may carry more than one nitrile
hydratase. The enzyme occurs in both non-heme iron and
non-corrin cobalt forms [Energy metabolism, Amino acids
and amines].
Length = 223
Score = 27.8 bits (62), Expect = 4.9
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 32 YRGLFQAVTTIVKEEGV---RALWKGHVPAQSLSITYGCVQFATFELMSQYISAGTP 85
Y V T++ E+G L + P S + FEL++ +S G P
Sbjct: 69 YEKWVIGVATLLVEKGYLTEDELDERAGPVGSPPKPGVKAALSPFELVAPVLSRGRP 125
>gnl|CDD|233451 TIGR01531, glyc_debranch, glycogen debranching enzymye. glycogen
debranching enzyme possesses two different catalytic
activities; oligo-1,4-->1,4-glucantransferase (EC
2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site
directed mutagenesis studies in S. cerevisiae indicate
that the transferase and glucosidase activities are
independent and located in different regions of the
polypeptide chain. Proteins in this model belong to the
larger alpha-amylase family. The model covers eukaryotic
proteins with a seed composed of human, nematode and
yeast sequences. Yeast seed sequence is well
characterized. The model is quite rigorous; either query
sequence yields large bit score or it fails to hit the
model altogether. There doesn't appear to be any middle
ground [Energy metabolism, Biosynthesis and degradation
of polysaccharides].
Length = 1464
Score = 28.3 bits (63), Expect = 5.6
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 61 LSITYGCVQFATFELMSQYISAGT--PTILTLVSSDFLCGILGSTIA 105
+S YGC++ +LMS++I + L+L S FL I +++
Sbjct: 961 VSGLYGCLRLKAIKLMSRFIGNSSLFVQSLSLSSLQFLSVIKSASLL 1007
>gnl|CDD|223032 PHA03283, PHA03283, envelope glycoprotein E; Provisional.
Length = 542
Score = 28.0 bits (62), Expect = 7.0
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 115 FYLICRDKPTILFRGLTPTLLQVAPQGGIQFTVYNILSHLFSLSD 159
F++ + P P + QV + F V S ++S D
Sbjct: 164 FFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGD 208
>gnl|CDD|225429 COG2874, FlaH, Predicted ATPases involved in biogenesis of archaeal
flagella [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 235
Score = 27.3 bits (61), Expect = 8.9
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Query: 6 LYLIRSTCQDYLMLQVESFDPQLGGKYRGLFQAVTTIVKEEGVR 49
L IRS C YL L++E +LGG V IVK G R
Sbjct: 175 LTRIRSACDVYLRLRLE----ELGGDLI----KVLEIVKYRGAR 210
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.386
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,789,705
Number of extensions: 1289969
Number of successful extensions: 1086
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1086
Number of HSP's successfully gapped: 19
Length of query: 279
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 183
Effective length of database: 6,679,618
Effective search space: 1222370094
Effective search space used: 1222370094
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)