RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7875
(279 letters)
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 101 bits (253), Expect = 2e-25
Identities = 34/226 (15%), Positives = 67/226 (29%), Gaps = 46/226 (20%)
Query: 16 YLMLQVESFDPQLGGKYRGLFQAVTTIVKEEGVRALWKGHVPAQSLSITYGCVQFATFEL 75
L +Q S +Y+G+ V I KE+G + W+G++ + FA +
Sbjct: 34 LLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDK 93
Query: 76 MSQYISAGTPTILTL---VSSDFLCGILG---STIAT---------------------MY 108
Q G + + G S +
Sbjct: 94 YKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREF 153
Query: 109 SGTLNAFYLICR-DKPTILFRGLTPTLLQVAPQGGIQFTVYNILSHLFSLSDYLSSSSAA 167
+G N I + D L++G ++ + F VY+ +
Sbjct: 154 TGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML------------ 201
Query: 168 SNPDPQTERRVLSPLGSLMAGSVAGLTSKVAIYPLDLAKKRIQVQG 213
+ + + + S M + + YP D ++R+ +Q
Sbjct: 202 ------PDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQS 241
Score = 73.1 bits (180), Expect = 3e-15
Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 23/158 (14%)
Query: 19 LQVESFDPQLGGKYRGLFQAVTTIVKEEGVRALWKGHVPAQSLSITYGCVQFATFELM-S 77
L + ++ GL +T I K +G+R L++G + I Y F ++
Sbjct: 140 LAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKG 199
Query: 78 QYISAGTPTILTLVSSDFLCGILGSTIAT--------------------MYSGTLNAFYL 117
I+ + ++ MY+GT++ +
Sbjct: 200 MLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRK 259
Query: 118 ICRDK-PTILFRGLTPTLLQVAPQGGIQFTVYNILSHL 154
I +D+ P F+G +L+ G +Y+ +
Sbjct: 260 IAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLYDEIKKF 296
Score = 51.9 bits (125), Expect = 6e-08
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 19 LQVESFDPQLGGKYRGLFQAVTTIVKEEGVRALWKGHVPAQSLSITYGCVQFATFELMSQ 78
+ ++S Y G I K+EG +A +KG + L G ++ + +
Sbjct: 237 MMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKG-AWSNVLRGMGGAFVLVLYDEIKK 295
Query: 79 YI 80
++
Sbjct: 296 FV 297
Score = 48.4 bits (116), Expect = 9e-07
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 177 RVLSPLGSLMAGSVAGLTSKVAIYPLDLAKKRIQVQG 213
+ LS L +AG VA SK A+ P++ K +QVQ
Sbjct: 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQH 39
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 94.7 bits (236), Expect = 6e-23
Identities = 34/209 (16%), Positives = 75/209 (35%), Gaps = 38/209 (18%)
Query: 29 GGKYRGLFQAVTTIVKEEGVRALWKGHVPAQSLSITYGCVQFATFELMSQYISA--GTPT 86
+YRG+ + T+V+ EG R+L+ G V +++ V+ ++ + Q+ +
Sbjct: 44 SAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAG 103
Query: 87 ILTLVSSDFLCGILGSTIAT--------M-----------YSGTLNAFYLICRDK-PTIL 126
I + + + G L +A Y T+ A+ I R++ L
Sbjct: 104 IGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGL 163
Query: 127 FRGLTPTLLQVAPQGGIQFTVYNILSHLFSLSDYLSSSSAASNPDPQTERRVLSPLGSLM 186
++G +P + + A + Y+++ ++ ++
Sbjct: 164 WKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPC----------------HFT 207
Query: 187 AGSVAGLTSKVAIYPLDLAKKRIQVQGFD 215
+ AG + V P+D+ K R
Sbjct: 208 SAFGAGFCTTVIASPVDVVKTRYMNSALG 236
Score = 78.5 bits (194), Expect = 4e-17
Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 20/156 (12%)
Query: 19 LQVESFDPQLGGKYRGLFQAVTTIVKEEGVRALWKGHVPAQSLSITYGCVQFATFELMSQ 78
Q ++ G +Y+ +A TI +EEG+R LWKG P + + C + T++L+
Sbjct: 132 FQAQARAGG-GRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKD 190
Query: 79 YISAGTP---TILTLVSSDFLCGILGSTIAT---------------MYSGTLNAFYLICR 120
+ + +S F G + IA+ Y + + R
Sbjct: 191 TLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLR 250
Query: 121 DK-PTILFRGLTPTLLQVAPQGGIQFTVYNILSHLF 155
+ P ++G P+ L++ + F Y L
Sbjct: 251 KEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRAL 286
Score = 50.4 bits (121), Expect = 2e-07
Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 18/119 (15%)
Query: 102 STIATMYSGTLNAFYLICR-DKPTILFRGLTPTLLQVAPQGGIQFTVYNILSHLFSLSDY 160
+ + Y G L + R + P L+ GL L + ++ +Y+ + ++
Sbjct: 41 TAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYT---- 96
Query: 161 LSSSSAASNPDPQTERRVLSPLGSLMAGSVAGLTSKVAIYPLDLAKKRIQVQGFDDARR 219
L+AGS G + P D+ K R Q Q R
Sbjct: 97 -------------KGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGR 142
Score = 37.7 bits (88), Expect = 0.003
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 185 LMAGSVAGLTSKVAIYPLDLAKKRIQVQG 213
+ A + + +PLD AK R+Q+QG
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQG 33
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.5 bits (154), Expect = 2e-11
Identities = 68/360 (18%), Positives = 120/360 (33%), Gaps = 130/360 (36%)
Query: 4 RQLY---------LIRSTCQDYLMLQVESFDPQLGGKYRGLFQAVTTIVKEEGVRALW-- 52
R LY LI+ + + L +F I++ W
Sbjct: 174 RDLYQTYHVLVGDLIKFSAE---TLSELIRTTL---DAEKVFTQGLNILE-------WLE 220
Query: 53 -KGHVPAQS--LSITYGC-----VQFATFELMSQYISAG-TPTILTLVSSDFLCGILGST 103
+ P + LSI C +Q A + + ++ G TP L +L G G +
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK--LLGFTPGEL----RSYLKGATGHS 274
Query: 104 --------IATMYSGTLNAFYLICRDKPTILF----RG--------LTPTLLQVAPQGGI 143
IA + + +F++ R T+LF R L P++L+ + +
Sbjct: 275 QGLVTAVAIAE--TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 144 QFTVYNILSHLFSLSDY----LSSSSAASNPDPQTERRV-LSPLGSLMAGS----VAGLT 194
+ S + S+S+ + +N ++V + SL+ G+ V+G
Sbjct: 333 -----GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI----SLVNGAKNLVVSGPP 383
Query: 195 SKVAIYPLDLAKKRIQVQ-GFDDARRDFGKETESDLRKPSLGN-----TAAF-------- 240
++Y L+L ++ + G D +R F + RK N + F
Sbjct: 384 Q--SLYGLNLTLRKAKAPSGLDQSRIPFSE------RKLKFSNRFLPVASPFHSHLLVPA 435
Query: 241 ------DSRRPSVA-----------DTSEGSRSQTPHSDTRSYR----ERLKDRIQTVKP 279
D + +V+ DT +G SD R ER+ D I P
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDG-------SDLRVLSGSISERIVDCI-IRLP 487
Score = 37.0 bits (85), Expect = 0.007
Identities = 42/326 (12%), Positives = 84/326 (25%), Gaps = 136/326 (41%)
Query: 59 QSLSITYGCVQFA----------------TF---------------------ELMSQYIS 81
+ L++++G ++ F EL+ +++
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 82 -----------AGTPTILTLV----SSDFLCG--I--LGSTIATMYSGTLNAFYLICR-- 120
+L L + +L G I L + + TL + +
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 121 -------DKPTILFRGLTPTLLQVAPQGGIQ-FTVY----NI------LSHLFS-----L 157
+P + L + +G Q ++ N L L+ +
Sbjct: 127 ITARIMAKRP--FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV 184
Query: 158 SDYLSSSSAASNP---DPQTERRVLS---PLGSLMAG-----SVAGLTSKVAI-YPLDLA 205
D + S+ + +V + + + L S + I PL
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS-IPISCPL--- 240
Query: 206 KKRI---QVQGFDDARRDFGKETESDLRKPSLGNT--------AAFDSRRPSVADTSE-- 252
I Q+ + + G T +LR G T A + D+ E
Sbjct: 241 ---IGVIQLAHYVVTAKLLGF-TPGELRSYLKGATGHSQGLVTAVA----IAETDSWESF 292
Query: 253 --------------GSRSQ--TPHSD 262
G R P++
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTS 318
Score = 28.9 bits (64), Expect = 2.6
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 23/88 (26%)
Query: 31 KYRGLFQAVTTIVKEEG-----VRALWKGHVPA----QSLSITYGCVQFATFELMS---- 77
YRG+ V E G + A+ G V A ++L V T L+
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY 1846
Query: 78 -----QYISAGTPTILTLVSSDFLCGIL 100
QY++AG L + D + +L
Sbjct: 1847 NVENQQYVAAG-----DLRALDTVTNVL 1869
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2;
hydrolase, phospholipase C, phosphoinositides, RHO
gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens}
PDB: 2w2w_A* 2w2x_C* 2k2j_A
Length = 124
Score = 28.2 bits (62), Expect = 1.3
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 140 QGGIQFTVYNILSHLFSLSDYLSSSSAASNPDPQTERRVLSPLGSLMAGSVAGLTSKVAI 199
Q G + +I ++ + + + D + +PLGSL G + T V
Sbjct: 14 QQGELYMWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVK 73
Query: 200 YPLDLAKK----RIQVQGFDDARRDFGKETESDL 229
P +K ++ + D +F + +L
Sbjct: 74 APQGKNQKSFVFILEPKQQGDPPVEFATDKVEEL 107
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell
membrane, membrane, transmembrane, transport protein;
HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB:
3gi9_C* 3gi8_C
Length = 444
Score = 26.9 bits (60), Expect = 9.5
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 81 SAGTPTILTLVSSDFLCGILGSTIATMYSGTLNAFYLICRDK--PTILFR 128
L+S L I + AT+Y G N Y + +D P R
Sbjct: 266 PFLGNLGFLLISIGALFSISSAMNATIYGGA-NVAYSLAKDGELPEFFER 314
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.386
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,010,608
Number of extensions: 229371
Number of successful extensions: 309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 299
Number of HSP's successfully gapped: 16
Length of query: 279
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 187
Effective length of database: 4,133,061
Effective search space: 772882407
Effective search space used: 772882407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)