RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7875
         (279 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 53.6 bits (127), Expect = 5e-09
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 19  LQVESFDPQLGGKYRGLFQAVTTIVKEEGVRALWKGHVPAQSLSITYGCVQFATFE 74
           + ++S        Y G       I K+EG +A +KG      L    G      ++
Sbjct: 236 MMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWS-NVLRGMGGAFVLVLYD 290



 Score = 49.7 bits (117), Expect = 1e-07
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 179 LSPLGSLMAGSVAGLTSKVAIYPLDLAKKRIQVQG 213
           LS L   +AG VA   SK A+ P++  K  +QVQ 
Sbjct: 4   LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQH 38



 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 28/172 (16%), Positives = 53/172 (30%), Gaps = 25/172 (14%)

Query: 1   MCARQLYLIRSTCQDYLM--LQVESFDPQLGGKYRGLFQAVTTIVKEEGVRALWKGHVPA 58
             A    L      D+    L  +        ++ GL   +T I K +G+R L++G   +
Sbjct: 119 GAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVS 178

Query: 59  QSLSITYGCVQFATFELMSQYISAGTPTILTLVSSDFLCGIL------------------ 100
               I Y    F  ++     +       + +                            
Sbjct: 179 VQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMM 238

Query: 101 ---GSTIATMYSGTLNAFYLICRDK-PTILFRGLTPTLLQVAPQGGIQFTVY 148
                    MY+GT++ +  I +D+ P   F+G    +L+    G     +Y
Sbjct: 239 QSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLY 289


>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide
           isomerase/thioredoxin TTHA0593 {Thermus thermophilus
           [TaxId: 274]}
          Length = 187

 Score = 27.2 bits (59), Expect = 1.7
 Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 11/47 (23%)

Query: 213 GFDDARRDFGKETESDLRKPSLGNTAAFDSRRPSVADTSEGSRSQTP 259
             +D  +D  K    DL        AA +    ++    E    + P
Sbjct: 133 RVNDNPKDPSKVQSHDLE-------AAIE----ALLRGEEPPLKEAP 168


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0452    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 945,433
Number of extensions: 40616
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 4
Length of query: 279
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,254,276
Effective search space: 244583820
Effective search space used: 244583820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.5 bits)