BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy788
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase
pdb|1YIZ|B Chain B, Aedes Aegypti Kynurenine Aminotrasferase
pdb|2R5C|A Chain A, Aedes Kynurenine Aminotransferase In Complex With Cysteine
Length = 429
Score = 150 bits (379), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 89/119 (74%)
Query: 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
+CYF +IS EL KR+ +A L + GM P +P GGYFMVADW+ L + L E+D +D
Sbjct: 311 ECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKD 370
Query: 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKN 125
++F KWMTK+V LQGIPPSAFYS+ +KHLGE+ +RYCFFKKDE L++A+ IL+ W+ +
Sbjct: 371 YRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKGSS 429
>pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase
pdb|1YIY|B Chain B, Aedes Aegypti Kynurenine Aminotransferase
pdb|2R5C|B Chain B, Aedes Kynurenine Aminotransferase In Complex With Cysteine
pdb|2R5E|A Chain A, Aedes Kynurenine Aminotransferase In Complex With
Glutamine
pdb|2R5E|B Chain B, Aedes Kynurenine Aminotransferase In Complex With
Glutamine
Length = 429
Score = 150 bits (379), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 89/119 (74%)
Query: 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
+CYF +IS EL KR+ +A L + GM P +P GGYFMVADW+ L + L E+D +D
Sbjct: 311 ECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKD 370
Query: 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKN 125
++F KWMTK+V LQGIPPSAFYS+ +KHLGE+ +RYCFFKKDE L++A+ IL+ W+ +
Sbjct: 371 YRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKGSS 429
>pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Kynurenine
pdb|3E2Y|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Glutamine
pdb|3E2Y|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Glutamine
Length = 410
Score = 105 bits (262), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 72/116 (62%), Gaps = 1/116 (0%)
Query: 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
+CYF ++ +EL KR+ + L+ G+ P++PDGGYF++AD + L L D SD+ D
Sbjct: 296 ECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGADLS-DMNSDEPYD 354
Query: 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122
+KF KWMTK+ KL IP SAF + K E L+R+CF KKD TL A I + W
Sbjct: 355 YKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRAWN 410
>pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase
Iii, Plp-Bound Form
pdb|3E2F|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase
Iii, Plp-Bound Form
pdb|3E2Z|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Kynurenine
pdb|2ZJG|A Chain A, Crystal Structural Of Mouse Kynurenine Aminotransferase
Iii
pdb|2ZJG|B Chain B, Crystal Structural Of Mouse Kynurenine Aminotransferase
Iii
Length = 410
Score = 105 bits (261), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 72/116 (62%), Gaps = 1/116 (0%)
Query: 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
+CYF ++ +EL KR+ + L+ G+ P++PDGGYF++AD + L L D SD+ D
Sbjct: 296 ECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGADLS-DMNSDEPYD 354
Query: 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122
+KF KWMTK+ KL IP SAF + K E L+R+CF KKD TL A I + W
Sbjct: 355 YKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRAWN 410
>pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With
Glycerol
pdb|3FVS|B Chain B, Human Kynurenine Aminotransferase I In Complex With
Glycerol
pdb|3FVU|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With Indole-3-acetic Acid
pdb|3FVU|B Chain B, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With Indole-3-acetic Acid
pdb|3FVX|A Chain A, Human Kynurenine Aminotransferase I In Complex With Tris
pdb|3FVX|B Chain B, Human Kynurenine Aminotransferase I In Complex With Tris
Length = 422
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 9 YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQL-RPMLRLDTESDKYEDF 67
YF + ++ R+ + +L G+ P+IP G YF++ D + R M L D+ D
Sbjct: 305 YFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDR 364
Query: 68 KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122
+F KWM KN L IP S FYS H+ ++ IR+CF K + TL+ L+ W+
Sbjct: 365 RFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWK 419
>pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Pmp Form
Length = 422
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 9 YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQL-RPMLRLDTESDKYEDF 67
YF + ++ R+ + +L G+ P+IP G YF++ D + R M L D+ D
Sbjct: 305 YFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDR 364
Query: 68 KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122
+F KWM KN L IP S FYS H+ ++ IR+CF K + TL+ L+ W+
Sbjct: 365 RFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWK 419
>pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
pdb|1W7M|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With L-Phe
Length = 422
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 9 YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQL-RPMLRLDTESDKYEDF 67
YF + ++ R+ + +L G+ P+IP G YF++ D + R M L D+ D
Sbjct: 305 YFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDR 364
Query: 68 KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122
+F KWM KN L IP S FYS H+ ++ IR+CF K + TL+ L+ W+
Sbjct: 365 RFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWK 419
>pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine
Aminotransferase From Saccharomyces Cerevisiae
pdb|3B46|B Chain B, Crystal Structure Of Bna3p, A Putative Kynurenine
Aminotransferase From Saccharomyces Cerevisiae
Length = 447
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 9 YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLR-------PMLRLDTES 61
YF + +E K +I D+ G+ P+G YF++ D+++++ P L+
Sbjct: 328 YFEKMRQEYINKFKIFTSIFDELGLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILN--- 384
Query: 62 DKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW 121
K +DF+ + W+ + + IPP+ FY EH+ ENL+R+ K D L A L+
Sbjct: 385 -KGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAYLENAVERLKLL 443
Query: 122 RN 123
++
Sbjct: 444 KD 445
>pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia
Coli Identify A Methionine Aminotransferase Function.
pdb|1U08|B Chain B, Crystal Structure And Reactivity Of Ybdl From Escherichia
Coli Identify A Methionine Aminotransferase Function
Length = 386
Score = 57.0 bits (136), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 13/111 (11%)
Query: 9 YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFK 68
++ + + R KR+IL +AL+++ + + +G YF++ D++ + + +D +
Sbjct: 287 HYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAVSTL----------DDVE 336
Query: 69 FAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQ 119
F +W+T+ + IP S F +D H LIR CF KK+ TL A+ L+
Sbjct: 337 FCQWLTQEHGVAAIPLSVFCADPFPH---KLIRLCFAKKESTLLAAAERLR 384
>pdb|2O0R|A Chain A, The Three-Dimensional Structure Of
N-Succinyldiaminopimelate Aminotransferase From
Mycobacterium Tuberculosis
pdb|2O0R|B Chain B, The Three-Dimensional Structure Of
N-Succinyldiaminopimelate Aminotransferase From
Mycobacterium Tuberculosis
Length = 411
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 13 ISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED-FKFAK 71
+ LR +R+ LA L + G G YF+ AD RP+ Y+D +F
Sbjct: 288 LRNSLRARRDRLAAGLTEIGFAVHDSYGTYFLCAD---PRPL--------GYDDSTEFCA 336
Query: 72 WMTKNVKLQGIPPSAF------YSDEHKHLGENLIRYCFFKKDETLREA 114
+ + V + IP SAF + + + +L+R+ F K+D+TL EA
Sbjct: 337 ALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEA 385
>pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
pdb|1V2E|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With A-Keto-G-Methylthiobutyrate
pdb|1V2E|B Chain B, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With A-Keto-G-Methylthiobutyrate
pdb|1V2F|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With 3-Phenylpropionate
pdb|1V2F|B Chain B, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With 3-Phenylpropionate
Length = 381
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 26/109 (23%)
Query: 9 YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVAD---WTQLRPMLRLDTESDKYE 65
++ + E R +R++LA L G+ +P+G YF++A+ W R
Sbjct: 275 FYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGWDAFR------------- 321
Query: 66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREA 114
+ + ++ IP SAFY ++ ++L R+ F K +E L A
Sbjct: 322 -------LVEEARVALIPASAFYLEDPP---KDLFRFAFCKTEEELHLA 360
>pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
pdb|1DJU|B Chain B, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
Length = 388
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 20/104 (19%)
Query: 15 EELRP----KREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFA 70
EE+R +R+++ L++ G+ V P G +++ P +R + K KF+
Sbjct: 287 EEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIF-------PRIRDTGLTSK----KFS 335
Query: 71 KWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREA 114
+ M K ++ +P SAF GE +R + E L EA
Sbjct: 336 ELMLKEARVAVVPGSAF-----GKAGEGYVRISYATAYEKLEEA 374
>pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form
pdb|1GDE|B Chain B, Crystal Structure Of Pyrococcus Protein A-1 E-form
pdb|1GD9|A Chain A, Crystall Structure Of Pyrococcus Protein-A1
pdb|1GD9|B Chain B, Crystall Structure Of Pyrococcus Protein-A1
Length = 389
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 20/104 (19%)
Query: 15 EELRP----KREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFA 70
EE+R +R+++ L++ G+ V P G +++ P +R + K KF+
Sbjct: 288 EEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIF-------PRIRDTGLTSK----KFS 336
Query: 71 KWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREA 114
+ M K ++ +P SAF GE +R + E L EA
Sbjct: 337 ELMLKEARVAVVPGSAF-----GKAGEGYVRISYATAYEKLEEA 375
>pdb|3ZEY|G Chain G, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 151
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 21 REILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKF 69
R+IL L GM P IP+ Y ++ TQ+R L +T+ DK F+
Sbjct: 69 RKIL-RILKHKGMAPEIPEDLYCLIKRATQMRKHLERNTK-DKDTKFRL 115
>pdb|2F20|A Chain A, X-Ray Crystal Structure Of Protein Bt_1218 From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr8.
pdb|2F20|B Chain B, X-Ray Crystal Structure Of Protein Bt_1218 From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr8
Length = 240
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 82 IPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKN 125
+P + ++ E +H G N I Y + KDE + + I W +K+
Sbjct: 105 VPSTGYF--EWRHEGANKIPYYIYVKDEPIFSXAGIYDRWLDKD 146
>pdb|2Q8X|A Chain A, The High-resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|2Q8X|B Chain B, The High-resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|3MSD|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSD|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSG|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSG|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 5 PDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPML 55
PD FY E P++ AL K+ IP G M A W+ RP L
Sbjct: 170 PDALLFYNDYNECFPEKREKIFALVKSLRDKGIPIHGIGMQAHWSLTRPSL 220
>pdb|1N82|A Chain A, The High-Resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|1N82|B Chain B, The High-Resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|3MUA|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MUA|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 5 PDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPML 55
PD FY E P++ AL K+ IP G M A W+ RP L
Sbjct: 170 PDALLFYNDYNECFPEKREKIFALVKSLRDKGIPIHGIGMQAHWSLTRPSL 220
>pdb|3MUI|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MUI|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 5 PDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPML 55
PD FY E P++ AL K+ IP G M A W+ RP L
Sbjct: 170 PDALLFYNDYNECFPEKREKIFALVKSLRDKGIPIHGIGMQAHWSLTRPSL 220
>pdb|3MS8|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MS8|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 5 PDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPML 55
PD FY E P++ AL K+ IP G M A W+ RP L
Sbjct: 170 PDALLFYNDYNECFPEKREKIFALVKSLRDKGIPIHGIGMQAHWSLTRPSL 220
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a
Subunit C- Terminal Domain, In Complex With A Sorting
Peptide From Tgn38
Length = 261
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 56 RLDTESDKYEDFKFAKWMTKNVKLQ 80
RLD +KY+ FK K++TK K Q
Sbjct: 234 RLDMYGEKYKPFKGVKYITKAGKFQ 258
>pdb|1PHZ|A Chain A, Structure Of Phosphorylated Phenylalanine Hydroxylase
pdb|2PHM|A Chain A, Structure Of Phenylalanine Hydroxylase Dephosphorylated
Length = 429
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 91 EHKHLGENLIRYCFFKKDET--LREASSILQT 120
EH H+ L +YC F++D L + S LQT
Sbjct: 205 EHNHIFPLLEKYCGFREDNIPQLEDVSQFLQT 236
>pdb|2AQV|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant Y137f
pdb|2AQV|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant Y137f
Length = 390
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLD 58
K Y ++IS+ LRP +A L+ G ++P AD + P LR++
Sbjct: 319 KDYDFSISDALRPLTSSVAGFLNLTGKGEILPGND----ADLLVMTPELRIE 366
>pdb|2AQO|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant E77q
pdb|2AQO|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant E77q
Length = 390
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLD 58
K Y ++IS+ LRP +A L+ G ++P AD + P LR++
Sbjct: 319 KDYDFSISDALRPLTSSVAGFLNLTGKGEILPGND----ADLLVMTPELRIE 366
>pdb|1YBQ|B Chain B, Crystal Structure Of Escherichia Coli Isoaspartyl
Dipeptidase Mutant D285n Complexed With
Beta-Aspartylhistidine
Length = 390
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLD 58
K Y ++IS+ LRP +A L+ G ++P AD + P LR++
Sbjct: 319 KDYDFSISDALRPLTSSVAGFLNLTGKGEILPGND----ADLLVMTPELRIE 366
>pdb|1YBQ|A Chain A, Crystal Structure Of Escherichia Coli Isoaspartyl
Dipeptidase Mutant D285n Complexed With
Beta-Aspartylhistidine
Length = 390
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLD 58
K Y ++IS+ LRP +A L+ G ++P AD + P LR++
Sbjct: 319 KDYDFSISDALRPLTSSVAGFLNLTGKGEILPGND----ADLLVMTPELRIE 366
>pdb|1ONW|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From E. Coli
pdb|1ONW|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From E. Coli
pdb|1ONX|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From
Escherichia Coli Complexed With Aspartate
pdb|1ONX|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From
Escherichia Coli Complexed With Aspartate
pdb|1PO9|A Chain A, Crytsal Structure Of Isoaspartyl Dipeptidase
pdb|1PO9|B Chain B, Crytsal Structure Of Isoaspartyl Dipeptidase
pdb|1POJ|A Chain A, Isoaspartyl Dipeptidase With Bound Inhibitor
pdb|1POJ|B Chain B, Isoaspartyl Dipeptidase With Bound Inhibitor
pdb|1POK|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase
pdb|1POK|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase
Length = 390
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLD 58
K Y ++IS+ LRP +A L+ G ++P AD + P LR++
Sbjct: 319 KDYDFSISDALRPLTSSVAGFLNLTGKGEILPGND----ADLLVMTPELRIE 366
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,160,818
Number of Sequences: 62578
Number of extensions: 164042
Number of successful extensions: 353
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 324
Number of HSP's gapped (non-prelim): 32
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)