Query psy788
Match_columns 126
No_of_seqs 117 out of 1460
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 21:09:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0436 Aspartate/tyrosine/aro 99.8 1.4E-19 3E-24 135.5 12.5 107 2-124 281-391 (393)
2 COG1168 MalY Bifunctional PLP- 99.8 1.3E-18 2.9E-23 126.9 10.9 107 2-124 278-386 (388)
3 PLN00175 aminotransferase fami 99.8 4E-18 8.6E-23 128.3 12.5 110 3-124 304-413 (413)
4 PRK08912 hypothetical protein; 99.7 2.9E-17 6.3E-22 122.4 12.5 109 4-124 278-386 (387)
5 PRK07366 succinyldiaminopimela 99.7 3E-17 6.4E-22 122.3 11.9 104 4-122 285-388 (388)
6 PRK08636 aspartate aminotransf 99.7 4.3E-17 9.3E-22 122.2 12.6 107 4-124 294-400 (403)
7 PRK06855 aminotransferase; Val 99.7 4.2E-17 9E-22 123.4 12.4 112 7-124 301-429 (433)
8 PRK07682 hypothetical protein; 99.7 4.5E-17 9.8E-22 120.9 12.2 106 3-124 271-376 (378)
9 PLN02376 1-aminocyclopropane-1 99.7 6E-17 1.3E-21 124.4 12.6 108 7-124 330-438 (496)
10 KOG0634|consensus 99.7 7.6E-17 1.7E-21 119.2 12.0 115 7-125 348-467 (472)
11 PRK09082 methionine aminotrans 99.7 7.6E-17 1.6E-21 120.2 12.1 102 6-120 284-385 (386)
12 PLN02607 1-aminocyclopropane-1 99.7 8.8E-17 1.9E-21 122.2 12.5 106 7-123 330-436 (447)
13 PRK09148 aminotransferase; Val 99.7 1.4E-16 2.9E-21 119.6 12.3 107 3-123 283-389 (405)
14 PRK06348 aspartate aminotransf 99.7 1.3E-16 2.9E-21 118.8 11.9 103 3-121 279-382 (384)
15 PRK06107 aspartate aminotransf 99.7 1.7E-16 3.8E-21 118.9 12.4 115 3-125 286-401 (402)
16 COG1167 ARO8 Transcriptional r 99.7 2.1E-16 4.6E-21 120.4 12.9 104 5-124 347-455 (459)
17 PRK07324 transaminase; Validat 99.7 2.3E-16 4.9E-21 117.3 12.5 103 3-124 267-370 (373)
18 PLN02450 1-aminocyclopropane-1 99.7 3.1E-16 6.6E-21 119.8 13.4 105 8-123 324-429 (468)
19 PRK06207 aspartate aminotransf 99.7 1.9E-16 4.1E-21 118.9 12.0 105 4-124 297-402 (405)
20 PRK07777 aminotransferase; Val 99.7 2.4E-16 5.2E-21 117.4 12.2 109 4-124 278-386 (387)
21 PLN00145 tyrosine/nicotianamin 99.7 2E-16 4.3E-21 119.7 11.8 105 6-124 318-424 (430)
22 PLN02231 alanine transaminase 99.7 2E-16 4.4E-21 122.4 11.8 112 9-124 415-527 (534)
23 PRK08175 aminotransferase; Val 99.7 3.7E-16 8.1E-21 116.8 12.6 108 3-124 282-389 (395)
24 PRK07590 L,L-diaminopimelate a 99.7 3.4E-16 7.5E-21 117.5 12.3 100 6-122 310-409 (409)
25 PRK15481 transcriptional regul 99.7 3.9E-16 8.4E-21 117.9 12.6 99 7-124 332-431 (431)
26 PRK07681 aspartate aminotransf 99.7 3.4E-16 7.3E-21 117.2 12.2 101 3-120 284-384 (399)
27 PTZ00377 alanine aminotransfer 99.7 3.7E-16 8E-21 119.6 12.2 111 10-124 364-475 (481)
28 PRK05957 aspartate aminotransf 99.7 4.5E-16 9.9E-21 116.2 12.2 104 4-124 279-385 (389)
29 PLN02656 tyrosine transaminase 99.7 6E-16 1.3E-20 116.3 12.7 106 6-125 297-404 (409)
30 PRK09276 LL-diaminopimelate am 99.7 5E-16 1.1E-20 115.6 12.0 101 3-120 284-384 (385)
31 PRK06108 aspartate aminotransf 99.7 6.1E-16 1.3E-20 114.8 12.2 105 3-124 277-382 (382)
32 PRK08068 transaminase; Reviewe 99.7 5.9E-16 1.3E-20 115.5 12.0 101 4-121 286-386 (389)
33 PRK08361 aspartate aminotransf 99.7 8.8E-16 1.9E-20 114.6 12.5 101 8-124 289-390 (391)
34 PRK07309 aromatic amino acid a 99.7 9.5E-16 2.1E-20 114.5 12.5 106 4-124 283-388 (391)
35 TIGR01264 tyr_amTase_E tyrosin 99.7 1.2E-15 2.7E-20 114.2 13.1 106 6-125 294-400 (401)
36 TIGR03540 DapC_direct LL-diami 99.7 7.9E-16 1.7E-20 114.5 11.9 101 3-120 282-382 (383)
37 PRK07568 aspartate aminotransf 99.7 9.4E-16 2E-20 114.4 12.3 107 3-124 280-392 (397)
38 PRK07337 aminotransferase; Val 99.7 1.3E-15 2.8E-20 113.5 12.9 104 8-122 283-387 (388)
39 PRK07683 aminotransferase A; V 99.7 1.2E-15 2.6E-20 113.8 12.5 106 3-124 278-383 (387)
40 PRK08960 hypothetical protein; 99.7 1.4E-15 3E-20 113.4 12.7 103 6-123 283-386 (387)
41 PRK05942 aspartate aminotransf 99.7 1.2E-15 2.6E-20 114.1 12.1 102 3-121 288-389 (394)
42 PTZ00433 tyrosine aminotransfe 99.7 1.5E-15 3.2E-20 114.2 12.7 105 6-124 303-408 (412)
43 KOG0257|consensus 99.7 5.2E-17 1.1E-21 119.6 4.6 112 8-120 303-415 (420)
44 PRK08363 alanine aminotransfer 99.7 1.4E-15 3E-20 113.8 12.3 107 3-124 287-394 (398)
45 TIGR01265 tyr_nico_aTase tyros 99.7 2E-15 4.4E-20 113.2 13.0 105 6-124 296-401 (403)
46 PRK12414 putative aminotransfe 99.7 1.6E-15 3.5E-20 113.0 12.3 99 9-120 285-383 (384)
47 PRK09147 succinyldiaminopimela 99.7 2.1E-15 4.5E-20 112.8 12.8 103 6-123 292-395 (396)
48 PRK13355 bifunctional HTH-doma 99.7 1.9E-15 4.1E-20 116.7 12.9 104 7-124 410-514 (517)
49 TIGR03538 DapC_gpp succinyldia 99.7 2.8E-15 6E-20 112.0 12.7 101 6-121 291-392 (393)
50 PRK09275 aspartate aminotransf 99.7 1.4E-15 3E-20 117.3 11.1 114 3-123 398-516 (527)
51 PLN02187 rooty/superroot1 99.6 4.4E-15 9.5E-20 113.3 12.9 105 6-124 332-438 (462)
52 TIGR03542 DAPAT_plant LL-diami 99.6 8.6E-15 1.9E-19 109.7 12.7 97 8-121 305-401 (402)
53 PLN00143 tyrosine/nicotianamin 99.6 9.7E-15 2.1E-19 109.8 12.6 104 6-124 298-404 (409)
54 TIGR03537 DapC succinyldiamino 99.6 7.8E-15 1.7E-19 108.1 11.8 96 7-120 254-349 (350)
55 PLN02672 methionine S-methyltr 99.6 1.5E-14 3.2E-19 118.3 13.1 109 7-122 965-1078(1082)
56 PRK07865 N-succinyldiaminopime 99.6 1.9E-14 4.2E-19 106.4 12.4 93 7-119 271-363 (364)
57 TIGR03801 asp_4_decarbox aspar 99.6 9.4E-15 2E-19 112.6 11.1 113 4-123 398-515 (521)
58 KOG0256|consensus 99.6 1.4E-14 3.1E-19 106.8 10.8 107 6-123 353-460 (471)
59 TIGR03539 DapC_actino succinyl 99.6 2.5E-14 5.4E-19 105.7 12.2 93 6-118 264-356 (357)
60 KOG0259|consensus 99.6 2.8E-14 6E-19 104.5 11.4 106 6-125 327-434 (447)
61 PRK09265 aminotransferase AlaT 99.6 4.7E-14 1E-18 105.8 13.0 98 14-124 303-401 (404)
62 PRK05839 hypothetical protein; 99.6 3.3E-14 7.1E-19 105.8 12.0 95 6-123 279-373 (374)
63 PRK07550 hypothetical protein; 99.6 4.4E-14 9.4E-19 105.3 12.1 102 3-121 281-384 (386)
64 PRK05764 aspartate aminotransf 99.6 5.4E-14 1.2E-18 104.8 12.7 105 6-124 286-391 (393)
65 PRK09440 avtA valine--pyruvate 99.6 5.2E-14 1.1E-18 105.8 12.1 105 8-124 300-411 (416)
66 PRK06836 aspartate aminotransf 99.5 2.2E-13 4.7E-18 102.0 11.6 90 14-124 302-391 (394)
67 PF00155 Aminotran_1_2: Aminot 99.5 4E-13 8.6E-18 99.0 9.4 91 8-118 272-363 (363)
68 PRK06425 histidinol-phosphate 99.4 3.5E-12 7.5E-17 93.5 12.4 94 7-122 238-331 (332)
69 COG3977 Alanine-alpha-ketoisov 99.4 1.7E-12 3.8E-17 93.0 9.8 101 12-124 305-411 (417)
70 PRK07392 threonine-phosphate d 99.4 5E-12 1.1E-16 93.5 12.0 93 7-119 262-357 (360)
71 PRK07908 hypothetical protein; 99.4 7.7E-12 1.7E-16 92.1 12.6 92 6-118 251-344 (349)
72 PRK08637 hypothetical protein; 99.4 4.2E-12 9.1E-17 94.9 11.0 93 8-124 289-386 (388)
73 PRK06290 aspartate aminotransf 99.4 9.1E-12 2E-16 93.9 12.1 103 7-123 299-404 (410)
74 PRK06225 aspartate aminotransf 99.4 1.4E-11 3.1E-16 91.7 12.7 104 4-123 270-375 (380)
75 PRK14809 histidinol-phosphate 99.3 2.4E-11 5.2E-16 89.8 11.7 90 6-123 267-356 (357)
76 PRK13238 tnaA tryptophanase/L- 99.3 1.9E-11 4E-16 93.5 11.1 100 20-123 324-432 (460)
77 PRK05166 histidinol-phosphate 99.3 3.2E-11 6.9E-16 89.6 11.6 90 7-119 278-369 (371)
78 PRK08056 threonine-phosphate d 99.3 6.1E-11 1.3E-15 87.7 12.1 91 6-117 258-351 (356)
79 PRK06358 threonine-phosphate d 99.3 6.4E-11 1.4E-15 87.6 12.1 92 6-120 259-351 (354)
80 PRK09257 aromatic amino acid a 99.3 3E-11 6.5E-16 90.5 10.1 83 7-121 308-395 (396)
81 PLN02397 aspartate transaminas 99.3 4.1E-11 8.9E-16 90.7 10.6 83 9-123 333-420 (423)
82 PRK03158 histidinol-phosphate 99.3 1.6E-10 3.4E-15 85.4 12.1 92 6-121 267-358 (359)
83 TIGR01140 L_thr_O3P_dcar L-thr 99.2 2.3E-10 4.9E-15 83.9 11.8 88 7-117 240-328 (330)
84 PTZ00376 aspartate aminotransf 99.2 1.5E-10 3.2E-15 87.1 10.2 84 8-123 314-402 (404)
85 PRK02731 histidinol-phosphate 99.2 5.7E-10 1.2E-14 82.6 12.7 95 7-123 271-365 (367)
86 PLN03026 histidinol-phosphate 99.2 5.1E-10 1.1E-14 83.6 11.7 91 7-117 286-378 (380)
87 PRK05387 histidinol-phosphate 99.2 1.1E-09 2.3E-14 80.7 12.6 95 7-124 259-353 (353)
88 PRK04870 histidinol-phosphate 99.2 8.5E-10 1.8E-14 81.4 11.6 91 7-120 263-354 (356)
89 PRK02610 histidinol-phosphate 99.2 8E-10 1.7E-14 82.3 11.5 95 2-124 276-371 (374)
90 PRK00950 histidinol-phosphate 99.1 9E-10 1.9E-14 81.3 11.5 92 7-122 269-360 (361)
91 PRK04781 histidinol-phosphate 99.1 1.2E-09 2.5E-14 81.2 11.6 90 8-119 269-361 (364)
92 TIGR03576 pyridox_MJ0158 pyrid 99.1 2.1E-09 4.6E-14 79.5 11.4 91 10-122 252-345 (346)
93 PF12897 Aminotran_MocR: Alani 99.1 2.3E-09 5E-14 79.3 10.9 102 6-123 305-414 (425)
94 TIGR01141 hisC histidinol-phos 99.1 2.6E-09 5.7E-14 78.4 10.8 88 8-118 257-345 (346)
95 KOG0258|consensus 99.1 1.1E-09 2.3E-14 81.0 8.4 105 11-122 362-467 (475)
96 PRK09105 putative aminotransfe 99.0 7E-09 1.5E-13 77.3 12.0 91 7-122 278-368 (370)
97 PRK08153 histidinol-phosphate 99.0 2.1E-08 4.6E-13 74.6 12.4 96 6-123 268-364 (369)
98 PRK14807 histidinol-phosphate 99.0 1.5E-08 3.2E-13 74.9 11.2 86 8-116 259-347 (351)
99 PRK06959 putative threonine-ph 98.9 8.5E-08 1.8E-12 70.7 12.1 88 6-121 243-330 (339)
100 PRK06939 2-amino-3-ketobutyrat 98.8 7.4E-08 1.6E-12 71.7 11.8 96 11-124 296-393 (397)
101 PLN02822 serine palmitoyltrans 98.8 9.2E-08 2E-12 73.7 12.4 106 11-124 367-477 (481)
102 PRK01688 histidinol-phosphate 98.8 8.2E-08 1.8E-12 71.0 11.6 89 7-118 261-350 (351)
103 TIGR00858 bioF 8-amino-7-oxono 98.8 6.2E-08 1.4E-12 71.1 10.7 91 10-118 267-359 (360)
104 cd00609 AAT_like Aspartate ami 98.8 1.4E-07 3E-12 68.6 12.1 94 8-119 255-349 (350)
105 PLN02483 serine palmitoyltrans 98.8 1.3E-07 2.8E-12 73.1 12.2 99 8-123 365-465 (489)
106 PRK03317 histidinol-phosphate 98.8 1.7E-07 3.7E-12 69.6 12.0 88 9-123 276-363 (368)
107 PRK04635 histidinol-phosphate 98.8 2.5E-07 5.4E-12 68.4 12.1 89 7-120 262-351 (354)
108 PRK05958 8-amino-7-oxononanoat 98.7 1.3E-07 2.9E-12 70.0 10.3 94 11-122 290-385 (385)
109 PRK05664 threonine-phosphate d 98.7 3.7E-07 8E-12 67.0 12.0 83 7-118 238-325 (330)
110 PRK01533 histidinol-phosphate 98.7 3.9E-07 8.4E-12 67.9 11.5 87 6-122 267-353 (366)
111 PRK08354 putative aminotransfe 98.7 3E-07 6.5E-12 66.9 10.1 81 8-118 227-309 (311)
112 PRK03321 putative aminotransfe 98.7 5.9E-07 1.3E-11 66.2 11.3 90 4-122 260-349 (352)
113 cd00378 SHMT Serine-glycine hy 98.6 9.1E-07 2E-11 66.3 10.8 102 9-123 276-384 (402)
114 PRK14808 histidinol-phosphate 98.6 1.4E-06 2.9E-11 64.2 11.2 86 7-120 248-333 (335)
115 TIGR03301 PhnW-AepZ 2-aminoeth 98.5 2.1E-06 4.5E-11 63.0 11.4 94 9-121 256-354 (355)
116 PRK13392 5-aminolevulinate syn 98.5 2.2E-06 4.8E-11 64.6 11.4 96 11-123 299-396 (410)
117 cd06451 AGAT_like Alanine-glyo 98.5 4.2E-06 9E-11 61.7 12.5 94 10-123 257-356 (356)
118 cd00617 Tnase_like Tryptophana 98.5 2.9E-06 6.3E-11 64.7 11.5 108 11-123 291-407 (431)
119 PRK10534 L-threonine aldolase; 98.4 6.8E-06 1.5E-10 60.1 11.5 78 18-123 253-332 (333)
120 TIGR01822 2am3keto_CoA 2-amino 98.4 8.4E-06 1.8E-10 60.9 11.9 96 10-123 291-388 (393)
121 cd06454 KBL_like KBL_like; thi 98.4 1.5E-05 3.3E-10 58.3 11.9 94 11-121 253-348 (349)
122 TIGR01825 gly_Cac_T_rel pyrido 98.3 1.6E-05 3.5E-10 59.2 11.9 94 12-123 285-380 (385)
123 PRK08088 4-aminobutyrate amino 98.3 1E-05 2.3E-10 61.4 10.8 104 6-124 317-423 (425)
124 PRK03967 histidinol-phosphate 98.3 7.4E-06 1.6E-10 60.3 9.5 81 8-120 251-333 (337)
125 PRK05093 argD bifunctional N-s 98.3 1.3E-05 2.9E-10 60.4 10.2 91 12-124 304-400 (403)
126 PLN02721 threonine aldolase 98.2 4.3E-05 9.3E-10 56.1 11.9 91 8-122 255-350 (353)
127 PRK09064 5-aminolevulinate syn 98.2 4.8E-05 1E-09 57.2 12.4 95 12-123 300-396 (407)
128 TIGR02326 transamin_PhnW 2-ami 98.2 4.8E-05 1E-09 56.3 12.1 96 9-123 261-361 (363)
129 PRK04260 acetylornithine amino 98.2 3.5E-05 7.6E-10 57.4 11.0 89 7-121 284-374 (375)
130 PRK02627 acetylornithine amino 98.2 5.5E-05 1.2E-09 56.6 11.8 91 8-124 302-394 (396)
131 TIGR01821 5aminolev_synth 5-am 98.1 8.3E-05 1.8E-09 55.9 12.3 96 11-123 298-395 (402)
132 COG0079 HisC Histidinol-phosph 98.1 9.5E-05 2.1E-09 55.2 12.1 97 6-124 257-354 (356)
133 TIGR00707 argD acetylornithine 98.1 5.5E-05 1.2E-09 56.2 10.8 85 12-122 290-379 (379)
134 PRK00451 glycine dehydrogenase 98.1 5.8E-05 1.3E-09 57.5 11.0 98 6-122 346-446 (447)
135 PRK10874 cysteine sulfinate de 98.1 8.5E-05 1.8E-09 55.8 11.7 100 11-124 295-398 (401)
136 PRK01278 argD acetylornithine 98.1 5.8E-05 1.3E-09 56.5 10.5 88 8-124 298-388 (389)
137 PRK02936 argD acetylornithine 98.1 0.0001 2.2E-09 54.9 11.2 85 12-122 287-377 (377)
138 TIGR00700 GABAtrnsam 4-aminobu 98.0 0.00013 2.7E-09 55.5 11.5 97 11-123 320-419 (420)
139 PLN02368 alanine transaminase 98.0 7E-06 1.5E-10 62.2 4.3 40 11-50 357-397 (407)
140 PRK13393 5-aminolevulinate syn 98.0 0.00016 3.4E-09 54.6 11.6 93 14-123 301-395 (406)
141 PLN00144 acetylornithine trans 98.0 0.00018 4E-09 54.0 11.4 89 8-124 290-380 (382)
142 TIGR03392 FeS_syn_CsdA cystein 97.9 0.00034 7.3E-09 52.5 11.7 100 11-124 292-395 (398)
143 PRK13479 2-aminoethylphosphona 97.9 0.00043 9.4E-09 51.3 11.5 95 9-124 262-363 (368)
144 PRK07179 hypothetical protein; 97.8 0.0006 1.3E-08 51.4 12.1 95 11-124 302-398 (407)
145 TIGR03402 FeS_nifS cysteine de 97.8 0.00027 5.9E-09 52.6 9.6 101 7-123 250-371 (379)
146 PRK06777 4-aminobutyrate amino 97.8 0.00054 1.2E-08 52.1 10.7 95 12-123 318-420 (421)
147 PRK06918 4-aminobutyrate amino 97.7 0.0012 2.5E-08 50.8 11.9 98 8-123 342-442 (451)
148 TIGR01979 sufS cysteine desulf 97.7 0.001 2.2E-08 50.0 11.4 99 10-123 293-400 (403)
149 PF04864 Alliinase_C: Allinase 97.7 0.00028 6E-09 52.1 7.7 93 8-121 255-362 (363)
150 PTZ00125 ornithine aminotransf 97.7 0.0013 2.8E-08 49.3 11.6 86 15-123 302-394 (400)
151 PRK09792 4-aminobutyrate trans 97.7 0.0013 2.9E-08 50.0 11.6 99 8-123 318-420 (421)
152 PRK03244 argD acetylornithine 97.6 0.0011 2.4E-08 49.8 10.7 87 12-123 303-393 (398)
153 TIGR03403 nifS_epsilon cystein 97.6 0.00092 2E-08 49.9 10.2 103 7-123 254-374 (382)
154 PRK04073 rocD ornithine--oxo-a 97.6 0.0014 2.9E-08 49.4 11.0 83 13-122 308-395 (396)
155 PRK00854 rocD ornithine--oxo-a 97.6 0.002 4.3E-08 48.4 11.9 87 13-123 309-400 (401)
156 TIGR02539 SepCysS Sep-tRNA:Cys 97.5 0.0012 2.6E-08 49.3 9.5 100 7-123 264-367 (370)
157 cd00610 OAT_like Acetyl ornith 97.5 0.0021 4.6E-08 48.2 10.2 95 12-122 313-413 (413)
158 PRK13520 L-tyrosine decarboxyl 97.5 0.0053 1.2E-07 45.4 12.2 89 9-124 280-371 (371)
159 PRK12381 bifunctional succinyl 97.5 0.0023 5.1E-08 48.4 10.4 90 12-123 303-398 (406)
160 PRK00011 glyA serine hydroxyme 97.4 0.0045 9.7E-08 46.8 11.8 104 8-124 279-389 (416)
161 cd06453 SufS_like Cysteine des 97.4 0.0041 9E-08 46.1 10.6 94 10-118 273-373 (373)
162 cd06450 DOPA_deC_like DOPA dec 97.4 0.0036 7.7E-08 45.8 10.2 95 8-120 244-344 (345)
163 PRK02948 cysteine desulfurase; 97.3 0.0016 3.6E-08 48.5 8.0 103 8-124 253-374 (381)
164 TIGR02407 ectoine_ectB diamino 97.3 0.005 1.1E-07 46.8 10.6 92 8-123 318-411 (412)
165 PRK07505 hypothetical protein; 97.2 0.0078 1.7E-07 45.4 11.1 55 66-125 344-400 (402)
166 PLN02409 serine--glyoxylate am 97.2 0.016 3.4E-07 43.9 12.3 96 9-123 270-371 (401)
167 TIGR01976 am_tr_V_VC1184 cyste 97.2 0.0092 2E-07 44.6 10.9 94 9-117 291-396 (397)
168 PRK09295 bifunctional cysteine 97.2 0.012 2.5E-07 44.4 11.5 97 11-122 300-402 (406)
169 PRK08247 cystathionine gamma-s 97.1 0.0068 1.5E-07 45.3 9.8 89 12-106 249-348 (366)
170 cd00613 GDC-P Glycine cleavage 97.1 0.0083 1.8E-07 44.8 10.0 91 7-118 303-398 (398)
171 TIGR01977 am_tr_V_EF2568 cyste 97.1 0.015 3.3E-07 43.1 11.2 97 11-120 269-375 (376)
172 TIGR03812 tyr_de_CO2_Arch tyro 97.0 0.03 6.6E-07 41.4 12.1 86 8-120 284-372 (373)
173 PLN02855 Bifunctional selenocy 97.0 0.018 3.8E-07 43.7 10.9 100 9-123 306-417 (424)
174 TIGR00713 hemL glutamate-1-sem 96.8 0.028 6E-07 42.7 10.6 104 8-124 317-422 (423)
175 TIGR03246 arg_catab_astC succi 96.7 0.027 5.9E-07 42.5 10.1 90 12-124 299-395 (397)
176 cd06502 TA_like Low-specificit 96.6 0.058 1.2E-06 39.3 10.6 86 12-120 248-337 (338)
177 PRK09264 diaminobutyrate--2-ox 96.6 0.072 1.6E-06 40.7 11.4 89 13-123 320-415 (425)
178 PLN02624 ornithine-delta-amino 96.5 0.04 8.7E-07 42.7 9.6 47 66-124 396-444 (474)
179 PRK08117 4-aminobutyrate amino 96.3 0.12 2.6E-06 39.5 11.2 76 32-123 351-428 (433)
180 TIGR01885 Orn_aminotrans ornit 96.2 0.11 2.4E-06 39.2 10.7 88 13-122 308-400 (401)
181 COG1448 TyrB Aspartate/tyrosin 96.2 0.066 1.4E-06 40.4 8.9 80 10-121 311-395 (396)
182 TIGR03235 DNA_S_dndA cysteine 96.2 0.004 8.8E-08 45.9 2.6 90 9-114 258-348 (353)
183 PRK13580 serine hydroxymethylt 96.0 0.27 5.9E-06 38.5 12.0 99 11-123 338-444 (493)
184 PRK06058 4-aminobutyrate amino 96.0 0.13 2.7E-06 39.6 10.1 96 13-124 340-442 (443)
185 COG1104 NifS Cysteine sulfinat 96.0 0.14 3.1E-06 38.8 9.9 103 8-124 256-377 (386)
186 COG0156 BioF 7-keto-8-aminopel 95.8 0.32 6.8E-06 37.0 11.2 92 12-121 294-387 (388)
187 PTZ00094 serine hydroxymethylt 95.7 0.25 5.5E-06 38.0 10.8 99 10-123 301-407 (452)
188 PLN03227 serine palmitoyltrans 95.6 0.52 1.1E-05 35.7 11.9 105 11-123 261-381 (392)
189 KOG0633|consensus 95.5 0.46 9.9E-06 34.5 10.6 86 8-110 276-364 (375)
190 TIGR01364 serC_1 phosphoserine 95.4 0.52 1.1E-05 35.1 11.2 94 10-125 249-349 (349)
191 PRK13034 serine hydroxymethylt 95.2 0.65 1.4E-05 35.4 11.2 99 12-123 286-391 (416)
192 PRK03080 phosphoserine aminotr 95.1 0.69 1.5E-05 34.7 11.2 96 10-123 270-372 (378)
193 PRK14012 cysteine desulfurase; 95.1 0.32 7E-06 36.7 9.4 97 9-123 262-378 (404)
194 PRK05355 3-phosphoserine/phosp 95.0 0.57 1.2E-05 35.1 10.4 94 10-125 260-359 (360)
195 TIGR01366 serC_3 phosphoserine 95.0 0.71 1.5E-05 34.5 10.9 95 10-124 259-360 (361)
196 PRK08297 L-lysine aminotransfe 95.0 0.8 1.7E-05 35.3 11.4 60 41-124 380-441 (443)
197 COG0520 csdA Selenocysteine ly 95.0 0.78 1.7E-05 35.1 11.2 98 10-122 298-403 (405)
198 TIGR01437 selA_rel uncharacter 94.9 0.15 3.3E-06 38.1 7.2 92 13-121 264-362 (363)
199 PLN02452 phosphoserine transam 94.3 1.2 2.6E-05 33.6 10.6 94 10-125 264-364 (365)
200 PRK07495 4-aminobutyrate amino 94.3 1.4 3.1E-05 33.7 11.1 68 41-123 351-420 (425)
201 PRK05937 8-amino-7-oxononanoat 94.2 0.81 1.8E-05 34.1 9.5 49 66-123 299-349 (370)
202 PRK00062 glutamate-1-semialdeh 94.0 1.3 2.7E-05 34.0 10.5 103 8-124 319-424 (426)
203 PLN02955 8-amino-7-oxononanoat 93.9 1.6 3.4E-05 34.2 10.8 52 66-122 406-459 (476)
204 PF00266 Aminotran_5: Aminotra 93.1 2.2 4.7E-05 31.7 10.1 89 10-113 273-370 (371)
205 TIGR02006 IscS cysteine desulf 92.9 1.8 3.9E-05 32.6 9.7 99 8-123 259-376 (402)
206 TIGR01814 kynureninase kynuren 92.7 3.4 7.3E-05 31.2 11.3 86 10-122 307-405 (406)
207 COG3033 TnaA Tryptophanase [Am 92.6 2.3 4.9E-05 32.4 9.4 82 21-106 336-423 (471)
208 TIGR03251 LAT_fam L-lysine 6-t 92.4 2.6 5.7E-05 32.3 10.0 56 41-120 373-430 (431)
209 PLN03226 serine hydroxymethylt 92.1 4.2 9.1E-05 31.8 10.9 99 11-123 313-418 (475)
210 PRK13237 tyrosine phenol-lyase 92.1 3.3 7.1E-05 32.3 10.1 98 22-123 326-432 (460)
211 cd00616 AHBA_syn 3-amino-5-hyd 90.7 5.1 0.00011 29.2 9.8 98 9-118 229-351 (352)
212 COG0001 HemL Glutamate-1-semia 90.3 4 8.6E-05 31.6 8.9 44 68-123 384-427 (432)
213 TIGR02618 tyr_phenol_ly tyrosi 89.3 8.9 0.00019 29.9 10.7 98 22-123 319-425 (450)
214 PRK07678 aminotransferase; Val 88.8 9.5 0.00021 29.5 11.9 52 67-124 396-449 (451)
215 PRK04366 glycine dehydrogenase 88.3 11 0.00023 29.5 10.4 51 66-123 395-447 (481)
216 PRK06541 hypothetical protein; 88.2 10 0.00022 29.5 10.1 100 12-123 346-454 (460)
217 PRK05964 adenosylmethionine--8 88.0 10 0.00022 29.0 10.7 45 66-123 375-421 (423)
218 cd06452 SepCysS Sep-tRNA:Cys-t 87.6 9.5 0.00021 28.2 10.8 87 20-122 269-360 (361)
219 COG0075 Serine-pyruvate aminot 87.4 11 0.00024 28.8 11.9 94 10-123 263-362 (383)
220 KOG1359|consensus 86.7 11 0.00024 28.1 10.3 53 66-123 357-411 (417)
221 KOG1360|consensus 85.8 15 0.00032 28.6 10.3 94 11-121 426-521 (570)
222 TIGR00709 dat 2,4-diaminobutyr 85.8 14 0.00031 28.4 10.3 102 12-123 325-434 (442)
223 PRK04612 argD acetylornithine 85.6 14 0.0003 28.2 11.0 88 13-123 308-402 (408)
224 PRK07269 cystathionine gamma-s 85.5 3.6 7.9E-05 30.9 6.2 89 10-111 247-354 (364)
225 TIGR01365 serC_2 phosphoserine 84.3 16 0.00034 27.7 11.1 98 10-119 261-368 (374)
226 PLN02724 Molybdenum cofactor s 84.3 23 0.00051 29.6 11.4 26 97-122 459-486 (805)
227 PF00464 SHMT: Serine hydroxym 84.2 17 0.00037 27.9 9.5 83 9-105 297-380 (399)
228 PLN02242 methionine gamma-lyas 83.9 17 0.00038 27.9 11.2 30 9-38 275-304 (418)
229 TIGR00508 bioA adenosylmethion 83.6 18 0.00039 27.8 10.1 85 14-123 336-425 (427)
230 PLN02880 tyrosine decarboxylas 82.9 21 0.00046 28.1 10.6 91 19-123 387-483 (490)
231 cd00611 PSAT_like Phosphoserin 82.9 17 0.00037 27.0 10.7 90 10-121 257-353 (355)
232 COG4992 ArgD Ornithine/acetylo 82.8 20 0.00043 27.7 11.2 88 13-124 305-398 (404)
233 PRK11522 putrescine--2-oxoglut 80.9 24 0.00053 27.5 11.6 88 14-123 356-450 (459)
234 PLN02271 serine hydroxymethylt 80.4 29 0.00064 28.1 10.6 98 11-122 434-538 (586)
235 PRK08360 4-aminobutyrate amino 79.9 26 0.00056 27.1 12.0 45 67-123 379-425 (443)
236 TIGR03372 putres_am_tran putre 78.7 29 0.00062 27.0 11.0 62 39-122 379-442 (442)
237 PRK05367 glycine dehydrogenase 78.6 35 0.00076 29.4 10.0 86 8-119 350-437 (954)
238 PRK06938 diaminobutyrate--2-ox 78.4 30 0.00065 27.0 11.4 47 67-123 411-459 (464)
239 PLN02651 cysteine desulfurase 77.6 22 0.00048 26.3 7.9 84 11-111 258-363 (364)
240 PRK00615 glutamate-1-semialdeh 77.6 31 0.00067 26.7 10.2 87 26-124 341-428 (433)
241 PRK07986 adenosylmethionine--8 76.0 34 0.00073 26.4 10.3 59 41-124 363-423 (428)
242 PF11629 Mst1_SARAH: C termina 75.8 6.4 0.00014 20.9 3.2 23 7-29 25-47 (49)
243 TIGR03531 selenium_SpcS O-phos 75.1 23 0.0005 27.6 7.5 105 5-121 318-443 (444)
244 PRK08593 4-aminobutyrate amino 74.9 37 0.0008 26.3 12.0 45 67-123 382-428 (445)
245 PRK06917 hypothetical protein; 74.3 38 0.00083 26.2 11.4 52 67-123 383-436 (447)
246 PRK13360 omega amino acid--pyr 74.0 39 0.00085 26.1 10.4 47 66-125 393-441 (442)
247 PLN02414 glycine dehydrogenase 73.8 45 0.00097 28.9 9.3 83 10-119 380-464 (993)
248 PRK06931 diaminobutyrate--2-ox 72.8 43 0.00093 26.1 10.1 47 67-123 405-453 (459)
249 TIGR02617 tnaA_trp_ase tryptop 71.6 48 0.001 26.1 9.5 97 22-123 335-440 (467)
250 PRK07483 hypothetical protein; 71.5 45 0.00098 25.8 11.0 52 67-123 383-436 (443)
251 PLN02590 probable tyrosine dec 69.1 58 0.0013 26.1 10.5 100 10-122 426-530 (539)
252 PRK05769 4-aminobutyrate amino 68.7 52 0.0011 25.4 11.7 94 13-124 340-439 (441)
253 PRK06082 4-aminobutyrate amino 68.7 54 0.0012 25.5 11.5 95 13-123 350-450 (459)
254 PRK09331 Sep-tRNA:Cys-tRNA syn 68.4 48 0.001 24.9 10.1 92 17-124 285-381 (387)
255 PRK05639 4-aminobutyrate amino 67.1 58 0.0013 25.4 11.9 47 67-123 394-442 (457)
256 COG0160 GabT 4-aminobutyrate a 66.4 62 0.0013 25.4 10.9 99 12-124 341-445 (447)
257 PRK07046 aminotransferase; Val 65.6 62 0.0014 25.2 10.4 43 68-123 407-449 (453)
258 PRK06148 hypothetical protein; 61.3 1.1E+02 0.0024 26.6 12.0 47 67-123 961-1009(1013)
259 PRK12566 glycine dehydrogenase 60.9 1.1E+02 0.0024 26.5 11.7 98 10-123 773-875 (954)
260 KOG1368|consensus 60.8 69 0.0015 24.1 9.1 79 18-120 281-364 (384)
261 PRK04013 argD acetylornithine/ 59.3 75 0.0016 24.0 7.7 58 41-124 301-360 (364)
262 PRK06173 adenosylmethionine--8 58.8 82 0.0018 24.3 10.9 85 14-123 335-424 (429)
263 PLN02414 glycine dehydrogenase 58.7 1.2E+02 0.0027 26.4 12.0 99 8-122 802-905 (993)
264 PRK07481 hypothetical protein; 57.2 89 0.0019 24.2 10.9 45 67-124 399-445 (449)
265 PRK03715 argD acetylornithine 57.2 84 0.0018 23.9 11.6 87 13-124 299-393 (395)
266 PLN02760 4-aminobutyrate:pyruv 56.9 97 0.0021 24.5 10.9 44 67-123 445-490 (504)
267 PF00392 GntR: Bacterial regul 55.2 18 0.00039 19.7 2.7 35 10-44 27-64 (64)
268 PLN02482 glutamate-1-semialdeh 54.0 1.1E+02 0.0023 24.1 10.8 45 67-123 428-472 (474)
269 PRK07482 hypothetical protein; 53.0 1.1E+02 0.0023 23.9 11.2 46 67-123 406-453 (461)
270 PRK06943 adenosylmethionine--8 50.6 1.2E+02 0.0026 23.6 9.8 44 67-123 400-445 (453)
271 PRK06767 methionine gamma-lyas 48.6 1.2E+02 0.0025 23.0 10.0 87 11-110 258-374 (386)
272 PRK12389 glutamate-1-semialdeh 47.8 1.3E+02 0.0027 23.2 10.5 45 67-123 382-426 (428)
273 TIGR01788 Glu-decarb-GAD gluta 45.5 1.4E+02 0.0031 23.1 11.4 100 10-123 324-428 (431)
274 TIGR00699 GABAtrns_euk 4-amino 44.3 1.6E+02 0.0034 23.2 10.7 59 40-122 404-464 (464)
275 KOG1122|consensus 44.0 1.6E+02 0.0034 23.2 7.7 62 10-88 340-402 (460)
276 KOG1357|consensus 43.6 95 0.0021 24.6 5.7 94 8-120 401-498 (519)
277 PRK09221 beta alanine--pyruvat 43.0 1.6E+02 0.0034 22.9 11.0 91 14-124 348-443 (445)
278 PRK05968 hypothetical protein; 42.4 1.5E+02 0.0032 22.4 9.8 45 66-111 315-376 (389)
279 KOG1358|consensus 41.8 1.1E+02 0.0024 23.8 5.8 54 67-122 408-463 (467)
280 PF13260 DUF4051: Protein of u 40.2 54 0.0012 17.3 2.8 23 8-30 20-42 (54)
281 PRK07036 hypothetical protein; 38.3 1.9E+02 0.0042 22.6 10.5 44 67-123 406-451 (466)
282 COG2810 Predicted type IV rest 37.2 95 0.0021 22.4 4.5 67 7-81 14-100 (284)
283 PRK06149 hypothetical protein; 36.1 2.9E+02 0.0063 24.0 11.2 48 67-124 921-970 (972)
284 smart00345 HTH_GNTR helix_turn 35.3 38 0.00083 17.4 2.0 34 10-43 23-59 (60)
285 PRK05965 hypothetical protein; 34.5 2.2E+02 0.0048 22.2 10.2 45 67-123 400-446 (459)
286 PRK11706 TDP-4-oxo-6-deoxy-D-g 33.8 2E+02 0.0044 21.5 7.0 61 10-83 249-318 (375)
287 PRK12462 phosphoserine aminotr 33.6 2.1E+02 0.0047 21.7 10.1 94 10-125 263-363 (364)
288 cd00446 GrpE GrpE is the adeni 33.3 1E+02 0.0022 19.7 4.0 32 10-41 61-92 (137)
289 PF14852 Fis1_TPR_N: Fis1 N-te 32.3 63 0.0014 15.7 2.2 18 107-124 16-33 (35)
290 KOG1549|consensus 31.2 82 0.0018 24.6 3.7 29 96-124 388-418 (428)
291 KOG2467|consensus 31.1 2.6E+02 0.0056 21.9 10.3 81 10-104 319-400 (477)
292 PRK07049 methionine gamma-lyas 30.9 2.5E+02 0.0054 21.6 10.3 22 9-31 290-311 (427)
293 PRK08861 cystathionine gamma-s 30.0 78 0.0017 24.1 3.5 23 97-119 358-385 (388)
294 PF09383 NIL: NIL domain; Int 29.9 1.1E+02 0.0023 17.1 3.4 24 97-120 45-68 (76)
295 cd04752 Commd4 COMM_Domain con 29.9 1.5E+02 0.0032 19.9 4.5 33 3-35 72-104 (174)
296 KOG4175|consensus 29.7 2E+02 0.0043 20.4 5.1 56 66-122 137-201 (268)
297 PF00224 PK: Pyruvate kinase, 29.5 60 0.0013 24.4 2.8 28 96-123 27-55 (348)
298 TIGR00461 gcvP glycine dehydro 28.9 4E+02 0.0086 23.3 10.5 88 7-119 337-426 (939)
299 PRK06105 aminotransferase; Pro 28.4 2.9E+02 0.0062 21.6 10.5 44 67-123 403-448 (460)
300 PF14527 LAGLIDADG_WhiA: WhiA 27.5 81 0.0018 18.8 2.6 64 32-119 12-75 (93)
301 PRK05630 adenosylmethionine--8 27.3 2.9E+02 0.0063 21.3 10.7 58 41-123 360-419 (422)
302 PF00352 TBP: Transcription fa 27.0 1.4E+02 0.003 17.4 4.3 56 66-124 21-84 (86)
303 cd04753 Commd5_HCaRG COMM_Doma 26.6 1.1E+02 0.0024 19.0 3.2 29 3-31 2-31 (110)
304 PF02082 Rrf2: Transcriptional 26.1 89 0.0019 17.9 2.6 36 10-45 28-68 (83)
305 PF06172 Cupin_5: Cupin superf 26.1 52 0.0011 21.3 1.7 22 27-49 4-25 (139)
306 COG1932 SerC Phosphoserine ami 26.0 3.1E+02 0.0066 21.1 10.5 90 10-121 265-360 (365)
307 KOG2825|consensus 25.8 1.2E+02 0.0025 22.4 3.5 52 19-80 203-254 (323)
308 PRK06209 glutamate-1-semialdeh 25.4 3.2E+02 0.0069 21.0 9.2 39 68-123 366-404 (431)
309 PRK08187 pyruvate kinase; Vali 25.3 1.3E+02 0.0027 24.1 3.9 29 95-123 158-187 (493)
310 PF05550 Peptidase_C53: Pestiv 25.2 44 0.00096 22.0 1.2 25 76-103 78-102 (168)
311 PRK14139 heat shock protein Gr 25.1 1E+02 0.0022 21.1 3.0 31 11-41 107-137 (185)
312 PRK06460 hypothetical protein; 24.8 3.1E+02 0.0066 20.7 11.4 25 7-31 237-261 (376)
313 PF12021 DUF3509: Protein of u 24.7 88 0.0019 19.0 2.4 29 22-50 5-35 (94)
314 PRK06739 pyruvate kinase; Vali 24.6 1.3E+02 0.0028 22.9 3.8 26 96-121 26-52 (352)
315 PRK05826 pyruvate kinase; Prov 24.5 1.4E+02 0.003 23.6 4.0 28 96-123 29-57 (465)
316 cd04751 Commd3 COMM_Domain con 24.0 1.3E+02 0.0029 18.0 3.2 24 100-123 65-88 (95)
317 TIGR03581 EF_0839 conserved hy 23.8 2.1E+02 0.0045 20.4 4.4 48 21-89 166-213 (236)
318 PF14530 DUF4439: Domain of un 23.6 1.8E+02 0.0039 18.7 3.8 34 9-42 30-63 (131)
319 PRK06916 adenosylmethionine--8 23.6 3.6E+02 0.0078 21.0 8.5 44 67-123 409-454 (460)
320 COG0112 GlyA Glycine/serine hy 23.4 3.6E+02 0.0079 21.0 11.8 101 10-123 282-389 (413)
321 PRK07480 putative aminotransfe 23.1 3.7E+02 0.0079 21.0 10.1 43 68-123 403-447 (456)
322 COG3309 VapD Uncharacterized v 23.1 1.7E+02 0.0036 17.8 3.3 26 17-44 21-46 (96)
323 PTZ00039 40S ribosomal protein 23.0 1.7E+02 0.0036 18.5 3.5 27 98-124 17-44 (115)
324 PF07071 DUF1341: Protein of u 22.7 1.3E+02 0.0028 21.1 3.2 47 22-89 167-213 (218)
325 PRK06247 pyruvate kinase; Prov 22.4 1.6E+02 0.0034 23.4 4.0 27 96-122 30-57 (476)
326 KOG1401|consensus 22.2 3.9E+02 0.0085 21.0 7.8 22 102-123 408-429 (433)
327 PF08861 DUF1828: Domain of un 22.1 1.8E+02 0.0039 17.0 3.4 30 18-49 45-74 (90)
328 PF14056 DUF4250: Domain of un 21.9 41 0.00089 18.3 0.5 34 3-36 16-49 (55)
329 TIGR01064 pyruv_kin pyruvate k 21.8 1.6E+02 0.0035 23.2 4.0 27 96-122 26-53 (473)
330 PF01930 Cas_Cas4: Domain of u 21.5 2E+02 0.0044 18.5 3.9 50 69-123 88-138 (162)
331 cd00288 Pyruvate_Kinase Pyruva 21.4 1.7E+02 0.0036 23.3 4.0 27 96-122 27-54 (480)
332 PRK10333 5-formyltetrahydrofol 20.8 44 0.00096 22.5 0.6 23 76-106 109-131 (182)
333 PRK08134 O-acetylhomoserine am 20.6 1.5E+02 0.0032 23.0 3.5 15 97-111 402-417 (433)
334 TIGR00122 birA_repr_reg BirA b 20.4 82 0.0018 17.2 1.6 40 10-49 16-58 (69)
335 COG0161 BioA Adenosylmethionin 20.1 4.5E+02 0.0097 20.8 9.3 94 16-123 345-442 (449)
336 PLN02461 Probable pyruvate kin 20.1 1.8E+02 0.004 23.3 3.9 28 96-123 46-74 (511)
No 1
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.83 E-value=1.4e-19 Score=135.45 Aligned_cols=107 Identities=26% Similarity=0.441 Sum_probs=94.3
Q ss_pred CCCCc--hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccC-CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhC
Q psy788 2 TTAPD--KCYFYTISEELRPKREILADALDKA-GMVPVI-PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNV 77 (126)
Q Consensus 2 ~~~~~--~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~-p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 77 (126)
+|++. +.+++.+++.|++||+.+.+.|.+. |+++.. |+|+||+|++++.. . ++.+|+.+|+++.
T Consensus 281 aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~---~---------d~~~f~~~Ll~~~ 348 (393)
T COG0436 281 ALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPEL---L---------DSEEFAKKLLEEA 348 (393)
T ss_pred HhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEEeecCCC---C---------CHHHHHHHHHHhC
Confidence 45666 3599999999999999999999988 699877 99999999999974 1 5889999999999
Q ss_pred CeeEeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 78 KLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 78 gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
||+|+||+.|+.. .+.+|+|++|+.+.+.+++++++|.++++.
T Consensus 349 gV~v~PG~~Fg~~----~g~~~vRis~~~~~~~l~~a~~rl~~~~~~ 391 (393)
T COG0436 349 GVAVVPGSGFGEP----PGEGYVRLSLATSEETLEEALRRLARFLAE 391 (393)
T ss_pred CEEEecccccCCC----CCCCeEEEEEecCHHHHHHHHHHHHHHHHh
Confidence 9999999999974 268999999999779999999999988763
No 2
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=99.79 E-value=1.3e-18 Score=126.85 Aligned_cols=107 Identities=26% Similarity=0.377 Sum_probs=98.3
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHhC--CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCe
Q psy788 2 TTAPDKCYFYTISEELRPKREILADALDKA--GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKL 79 (126)
Q Consensus 2 ~~~~~~~~l~~~r~~~~~r~~~l~~~l~~~--g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV 79 (126)
|+++++.|++.++..++.|++++.+.|.++ ++++..|+|.|.+|++++..+ + ++.++.++++.+++|
T Consensus 278 AY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~p~gTYL~WLD~r~l~--l---------~d~~l~~~ll~~akV 346 (388)
T COG1168 278 AYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQGTYLAWLDCRELG--L---------DDSELAEFLLEEAKV 346 (388)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecCCCceeeeeeccccC--C---------ChHHHHHHHHHhhcE
Confidence 467889999999999999999999999987 799999999999999999865 2 467899999999999
Q ss_pred eEeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 80 QGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 80 ~v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
.+.+|+.||.. +.+++|+|++++...+++|++||..++++
T Consensus 347 al~~G~~FG~~-----g~gf~RlN~acpr~~L~eal~ri~~al~~ 386 (388)
T COG1168 347 ALSPGSTFGEE-----GSGFVRLNFACPRAILEEALERLKRALKK 386 (388)
T ss_pred eccCCCccCcC-----CCceEEEecCCCHHHHHHHHHHHHHHHhc
Confidence 99999999975 68999999999999999999999988875
No 3
>PLN00175 aminotransferase family protein; Provisional
Probab=99.78 E-value=4e-18 Score=128.27 Aligned_cols=110 Identities=29% Similarity=0.595 Sum_probs=92.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788 3 TAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI 82 (126)
Q Consensus 3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~ 82 (126)
|..++.|++++++.|++|++.+.+.|+++|+++..|+||||+|++++..+ .+ ++.+|+..|++++||.+.
T Consensus 304 l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~g~~f~~~~~~~~~--~~--------~~~~~~~~ll~~~gV~v~ 373 (413)
T PLN00175 304 LRAPESYYEELKRDYSAKKDILVEGLKEVGFKVYPSSGTYFVMVDHTPFG--FE--------NDIAFCEYLIEEVGVAAI 373 (413)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEeccccC--CC--------CHHHHHHHHHHhCCEEEe
Confidence 44557899999999999999999999988888999999999999985321 11 367899998878899999
Q ss_pred CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
||+.|+.... .+.+++||+|+.+++.+++++++|.+++++
T Consensus 374 pg~~F~~~~~--~~~~~iRls~~~~~e~l~~~~~rL~~~~~~ 413 (413)
T PLN00175 374 PPSVFYLNPE--DGKNLVRFAFCKDEETLRAAVERMKTKLKR 413 (413)
T ss_pred CchHhCCCCC--CCCCEEEEEEcCCHHHHHHHHHHHHHHHhC
Confidence 9999975320 246899999999999999999999998764
No 4
>PRK08912 hypothetical protein; Provisional
Probab=99.75 E-value=2.9e-17 Score=122.36 Aligned_cols=109 Identities=29% Similarity=0.530 Sum_probs=91.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788 4 APDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP 83 (126)
Q Consensus 4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p 83 (126)
...++|++++++.|+++++.+.+.|+++|+++.+|+||||+|++++...... ++.+++..++.+.||.+.|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~g~~~l~~~l~~~~~~~---------~~~~~~~~l~~~~gV~v~p 348 (387)
T PRK08912 278 GKPDDYFEGMRADLARSRDRLAAGLRRIGFPVLPSQGTYFLTVDLAPLGLAE---------DDVAFCRRLVEEAGVAAIP 348 (387)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEecccccCCCC---------CHHHHHHHHHhcCCEEEec
Confidence 3456899999999999999999999988888889999999999997521101 4678888887788999999
Q ss_pred CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
|+.|+... .+.+|+|++|+.+++.+++|+++|.+++++
T Consensus 349 g~~f~~~~---~~~~~iRl~~~~~~~~l~~~l~rl~~~l~~ 386 (387)
T PRK08912 349 VSAFYEED---PVTSVVRFCFAKRDATLDEAVERLAAARRR 386 (387)
T ss_pred chhhCCCC---CCCCEEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 99997532 246899999999889999999999998875
No 5
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=99.74 E-value=3e-17 Score=122.33 Aligned_cols=104 Identities=16% Similarity=0.315 Sum_probs=87.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788 4 APDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP 83 (126)
Q Consensus 4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p 83 (126)
.+.+.|++++++.|+++|+.+.+.|+++|+.+..|+||+|+|++++... . .++.+++..++.++||.+.|
T Consensus 285 ~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~f~~~~~~~~~---~-------~~~~~~~~~l~~~~gv~v~p 354 (388)
T PRK07366 285 TGPQATVQQTVQIFRQRRDAFINALHQIGWPVPLPEATMYVWAKLPEPW---Q-------GNSVEFCTQLVAQTGVAASP 354 (388)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeEEEEEECCccc---C-------CCHHHHHHHHHHhCCEEEeC
Confidence 3456899999999999999999999988888888999999999998531 0 03567888877789999999
Q ss_pred CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788 84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122 (126)
Q Consensus 84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~ 122 (126)
|+.|+.. +++|+||+|+.+.+.+++|+++|.+++
T Consensus 355 g~~f~~~-----~~~~iRi~~~~~~~~l~~~l~rl~~~l 388 (388)
T PRK07366 355 GSGFGKS-----GEGYVRFALVHDPDILEEAVERIAAFL 388 (388)
T ss_pred chHhCcC-----CCCeEEEEecCCHHHHHHHHHHHHHhC
Confidence 9999743 468999999988999999999998753
No 6
>PRK08636 aspartate aminotransferase; Provisional
Probab=99.74 E-value=4.3e-17 Score=122.17 Aligned_cols=107 Identities=20% Similarity=0.356 Sum_probs=90.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788 4 APDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP 83 (126)
Q Consensus 4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p 83 (126)
++.+.|++++++.|+++++.+.+.|.+.++++..|+||||+|++++...... ++.+++..++.+.||.+.|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~g~~~~~~l~~~~~~~---------~~~~l~~~ll~~~gV~v~p 364 (403)
T PRK08636 294 DGDQSCVEEIRETYRKRRDVLIESFANAGWELQKPRASMFVWAKIPEPARHL---------GSLEFSKQLLTEAKVAVSP 364 (403)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCcceEEEEECCCccCCC---------CHHHHHHHHHHhCCEEEec
Confidence 3456899999999999999999999988888889999999999998531001 3568888877789999999
Q ss_pred CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
|+.|+.. +.+++||+|+.+.+.+++++++|.+++++
T Consensus 365 g~~f~~~-----~~~~iRi~~~~~~~~l~~~~~rl~~~l~~ 400 (403)
T PRK08636 365 GIGFGEY-----GDEYVRIALIENENRIRQAARNIKKFLKE 400 (403)
T ss_pred chhhCcC-----CCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 9999753 46899999998899999999999988763
No 7
>PRK06855 aminotransferase; Validated
Probab=99.74 E-value=4.2e-17 Score=123.41 Aligned_cols=112 Identities=14% Similarity=0.213 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCccc------ccccCCCC--------C-chhhHHHH
Q psy788 7 KCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRP------MLRLDTES--------D-KYEDFKFA 70 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~------~~~~~~~~--------~-~~~~~~~~ 70 (126)
++|++++++.|++|++.+.+.|+++ ++.+..|+||||+|++++.... .++..+.. + ..++.+|+
T Consensus 301 ~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (433)
T PRK06855 301 KNYLKERNKRYEKRSNIAYEKLKDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFV 380 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHH
Confidence 6799999999999999999999887 7888999999999999985310 00000000 0 01256788
Q ss_pred HHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788 71 KWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNK 124 (126)
Q Consensus 71 ~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~ 124 (126)
..++.++||.+.||+.|+.. .+++||||+. +.++|++|+++|.++++.
T Consensus 381 ~~l~~~~gV~v~PG~~F~~~------~~~~Rls~~~~~~~~i~~~~~~l~~~~~~ 429 (433)
T PRK06855 381 YYLLASTGICVVPLSSFCTE------LNGFRVTLLERDEEKFEWIYQTLAEKIEE 429 (433)
T ss_pred HHHHHHcCEEEecCCcCCCC------CCceEEEECCCcHHHHHHHHHHHHHHHHH
Confidence 78888999999999999742 3469999997 899999999999998764
No 8
>PRK07682 hypothetical protein; Validated
Probab=99.74 E-value=4.5e-17 Score=120.94 Aligned_cols=106 Identities=19% Similarity=0.356 Sum_probs=90.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788 3 TAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI 82 (126)
Q Consensus 3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~ 82 (126)
|+..+.|++++++.|+++++.+.+.|+++|+++..|+||||+|++++... . ++.++++.++.++||.+.
T Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~g~~~~~~~~~~~~--~---------~~~~~~~~ll~~~gv~v~ 339 (378)
T PRK07682 271 LRAGNDDVIRMRDSYRKRRNFFVTSFNEIGLTCHVPGGAFYAFPSISSTG--L---------SSEEFAEQLLLEEKVAVV 339 (378)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHHHCCCccCCCCeeEEEEEeccCCC--C---------CHHHHHHHHHHhCCEEEc
Confidence 34455789999999999999999999988888999999999999986321 1 367888887778899999
Q ss_pred CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
||+.|+.. +++++|++|+.+.+.+++++++|.+++++
T Consensus 340 pg~~f~~~-----~~~~iRis~~~~~~~l~~~l~~l~~~l~~ 376 (378)
T PRK07682 340 PGSVFGES-----GEGFIRCSYATSLEQLQEAMKRMKRFVEN 376 (378)
T ss_pred CchhhCcC-----CCCeEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 99999642 46899999999889999999999998764
No 9
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=99.73 E-value=6e-17 Score=124.43 Aligned_cols=108 Identities=22% Similarity=0.362 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
+.|++++++.|+++++.+.+.|++.|+++..|+||||+|++++... + +.....++.++++.++.+.||.|.||+.
T Consensus 330 ~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~~~~aG~flwi~l~~~~---~--~~~~~~~e~~l~~~ll~~~gV~v~pGs~ 404 (496)
T PLN02376 330 DNFLMESSRRLGIRHKVFTTGIKKADIACLTSNAGLFAWMDLRHLL---R--DRNSFESEIELWHIIIDKVKLNVSPGSS 404 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCceEEEEEEchhhh---c--cCCchhHHHHHHHHHHHcCCEEEeCccc
Confidence 4577888999999999999999988899999999999999997531 1 0000112467888888778999999999
Q ss_pred cccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788 87 FYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNK 124 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~ 124 (126)
|+.. .++|||+||+. +++.+++|++||.+++.+
T Consensus 405 F~~~-----~~g~~Ri~fa~~~~~~l~~al~rl~~~l~~ 438 (496)
T PLN02376 405 FRCT-----EPGWFRICFANMDDDTLHVALGRIQDFVSK 438 (496)
T ss_pred cCCC-----CCCEEEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence 9754 46899999996 889999999999998853
No 10
>KOG0634|consensus
Probab=99.73 E-value=7.6e-17 Score=119.19 Aligned_cols=115 Identities=14% Similarity=0.114 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhC---C-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788 7 KCYFYTISEELRPKREILADALDKA---G-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI 82 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~---g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~ 82 (126)
.+|+.++|..|..||+++..++.++ + +++++|.||||+|++++..- .+. ....+...++....+.+.||.++
T Consensus 348 ~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~--~~~--~~~i~q~~e~i~~~~vk~gV~~v 423 (472)
T KOG0634|consen 348 LRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYIN--FDT--KKSINQIEEIIFIKAVKNGVKLV 423 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccc--ccc--ccchHHHHHHHHHHHHHCCeEEe
Confidence 4799999999999999999999986 4 77899999999999998321 110 01111245666667789999999
Q ss_pred CCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhcC
Q psy788 83 PPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNKN 125 (126)
Q Consensus 83 pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~~ 125 (126)
+|+.|..+++.....-|||++|+. +.|++++|++|+...++.+
T Consensus 424 ~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~ike~ 467 (472)
T KOG0634|consen 424 CGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVIKEH 467 (472)
T ss_pred cCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHHHHH
Confidence 999999863211123599999997 9999999999999998853
No 11
>PRK09082 methionine aminotransferase; Validated
Probab=99.73 E-value=7.6e-17 Score=120.19 Aligned_cols=102 Identities=28% Similarity=0.560 Sum_probs=87.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
.+.|++++++.|+++++++.+.|++.++.+.+|+||||+|+++++.. .. ++.+|+.+|+++.||.+.||+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~-~~---------~~~~~~~~l~~~~~v~v~pg~ 353 (386)
T PRK09082 284 EPEHYLELPAFYQAKRDRFRAALANSRFKLLPCEGTYFQLVDYSAIS-DL---------DDVEFCQWLTREHGVAAIPLS 353 (386)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCeeEEEEEeccccC-CC---------CHHHHHHHHHHhCCEEEeCcH
Confidence 56899999999999999999999988889999999999999998521 01 467898988789999999999
Q ss_pred CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788 86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQT 120 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~ 120 (126)
.|+..+ .+.+++|++|+.+++.+++++++|.+
T Consensus 354 ~f~~~~---~~~~~~Ri~~~~~~~~l~~~~~rl~~ 385 (386)
T PRK09082 354 VFYADP---FPHRLVRLCFAKQEETLDAAAERLCQ 385 (386)
T ss_pred HhCCCC---CCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 997432 24689999999989999999999975
No 12
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=99.73 E-value=8.8e-17 Score=122.17 Aligned_cols=106 Identities=22% Similarity=0.340 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
+.|+...|++|+++++.+.+.|++.|+++..|+||||+|++++... ..+ ....+.+++..++++.||.|.||+.
T Consensus 330 ~~~l~~~r~~l~~~~~~~~~~L~~~gi~~~~~~ag~fvw~~L~~~~---~~~---~~~~e~~l~~~ll~~~gV~v~pG~~ 403 (447)
T PLN02607 330 ENYIRTNRERLRKRYEMIVQGLRRAGIECLKGNAGLFCWMNLSPLL---ETP---TREGELALWDSILREVKLNISPGSS 403 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCeeEEEEEEchHhh---cCC---CchhHHHHHHHHHHhCCEEEcCccc
Confidence 4688999999999999999999988999999999999999997531 100 0012457887887778999999999
Q ss_pred cccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788 87 FYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN 123 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~ 123 (126)
|+.. .++|||++|+. +++.+++|++||.++++
T Consensus 404 f~~~-----~~g~fRi~fa~~~~~~l~~gl~Ri~~~l~ 436 (447)
T PLN02607 404 CHCS-----EPGWFRVCFANMSEDTLEVALKRIHRFMD 436 (447)
T ss_pred cCCC-----CCCEEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 9764 47999999997 89999999999998876
No 13
>PRK09148 aminotransferase; Validated
Probab=99.72 E-value=1.4e-16 Score=119.63 Aligned_cols=107 Identities=16% Similarity=0.312 Sum_probs=89.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788 3 TAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI 82 (126)
Q Consensus 3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~ 82 (126)
+.+.+.|++++++.|+++|+.+.+.|+++++.+..|+||+|+|++++...... ++.+++..++.+.||.|.
T Consensus 283 L~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~f~~~~l~~~~~~~---------~~~~~~~~ll~~~gV~v~ 353 (405)
T PRK09148 283 LNGPQDCIAEMRELYKKRRDVLVESFGRAGWDIPPPAASMFAWAPIPEAFRHL---------GSLEFSKLLVEKADVAVA 353 (405)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCeeEEEEEECCCccCCC---------CHHHHHHHHHHhCCEEEe
Confidence 34457899999999999999999999988888888999999999998531000 256888887778999999
Q ss_pred CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788 83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN 123 (126)
Q Consensus 83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~ 123 (126)
||+.|+.. +.+|+||+|+.+.+.+.+|+++|.++++
T Consensus 354 pg~~f~~~-----~~~~~Ri~~~~~~~~l~~al~~l~~~l~ 389 (405)
T PRK09148 354 PGVGFGEH-----GDGYVRIALVENEQRIRQAARNIKRFLS 389 (405)
T ss_pred CchhhCCC-----CCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 99999643 4689999999888999999999998876
No 14
>PRK06348 aspartate aminotransferase; Provisional
Probab=99.71 E-value=1.3e-16 Score=118.80 Aligned_cols=103 Identities=20% Similarity=0.254 Sum_probs=87.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788 3 TAPDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG 81 (126)
Q Consensus 3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v 81 (126)
+...+.|++++++.|++|++.+.+.|++. ++++..|+||||+|++++... + ++.+++..++.+.||.|
T Consensus 279 l~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~~~~~~~~~--~---------~~~~l~~~l~~~~gv~v 347 (384)
T PRK06348 279 LKHRDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPKGSIYAFINIKKTG--L---------SSVEFCEKLLKEAHVLV 347 (384)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEecccCC--C---------CHHHHHHHHHHhCCEEE
Confidence 34557899999999999999999999887 678889999999999997422 1 46788888777789999
Q ss_pred eCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHh
Q psy788 82 IPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW 121 (126)
Q Consensus 82 ~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~ 121 (126)
.||+.|+.. +.+++|++|+.+++++++|+++|.+.
T Consensus 348 ~pg~~f~~~-----~~~~iRi~~~~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 348 IPGKAFGES-----GEGYIRLACTVGIEVLEEAFNRIEKM 382 (384)
T ss_pred cCchhhccC-----CCCeEEEEecCCHHHHHHHHHHHHhh
Confidence 999999753 46899999998889999999999764
No 15
>PRK06107 aspartate aminotransferase; Provisional
Probab=99.71 E-value=1.7e-16 Score=118.87 Aligned_cols=115 Identities=14% Similarity=0.186 Sum_probs=90.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788 3 TAPDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG 81 (126)
Q Consensus 3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v 81 (126)
++.++.|++++++.|+++++.+.+.|+++ |+++..|+||||+|++++.... ...+......++.+++..++++.||.+
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p~gg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~gv~v 364 (402)
T PRK06107 286 LNGDQSFVTESVAVYKQRRDYALALLNAIPGLSCLVPDGAFYLYVNCAGLIG-KTTPEGKVLETDQDVVLYLLDSAGVAV 364 (402)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEeeecccccc-cccccccCCCCHHHHHHHHHHhCCEEE
Confidence 34456899999999999999999999887 7889999999999999853200 000000000135678888888899999
Q ss_pred eCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhcC
Q psy788 82 IPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKN 125 (126)
Q Consensus 82 ~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~~ 125 (126)
.||+.|+. .+|+|++|+.+.+.+++++++|.+.+++-
T Consensus 365 ~pg~~Fg~-------~~~iRis~~~~~e~l~~~l~~l~~~l~~~ 401 (402)
T PRK06107 365 VQGTAYGL-------SPYFRLSIATSLETLEEACARIERAVAAL 401 (402)
T ss_pred eCccccCC-------CCeEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 99999963 47999999999999999999999988764
No 16
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=99.71 E-value=2.1e-16 Score=120.43 Aligned_cols=104 Identities=19% Similarity=0.209 Sum_probs=89.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhC---CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788 5 PDKCYFYTISEELRPKREILADALDKA---GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG 81 (126)
Q Consensus 5 ~~~~~l~~~r~~~~~r~~~l~~~l~~~---g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v 81 (126)
+.+.|++++|+.|++||+.+.++|+++ .++++.|.||||+|++++.. + ++.++...+ .++||.+
T Consensus 347 ~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~---~---------~~~~l~~~a-~~~gv~i 413 (459)
T COG1167 347 HYDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEG---I---------DARELLAAA-LEKGVVV 413 (459)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEEcCCC---C---------CHHHHHHHH-HHCCCEE
Confidence 467899999999999999999999997 37889999999999999974 2 467788875 4889999
Q ss_pred eC-CCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788 82 IP-PSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNK 124 (126)
Q Consensus 82 ~p-g~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~ 124 (126)
.| |..|..+. ...+++|+||+. +++++++++++|.+.++.
T Consensus 414 ~~~g~~f~~~~---~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~~ 455 (459)
T COG1167 414 TPLGSAFSADG---DPRNGLRLSFSSPSEEEIEEGIKRLAALLRE 455 (459)
T ss_pred EcCCccccCCC---CCCCeEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 99 88888653 246799999998 889999999999988764
No 17
>PRK07324 transaminase; Validated
Probab=99.71 E-value=2.3e-16 Score=117.31 Aligned_cols=103 Identities=16% Similarity=0.134 Sum_probs=90.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788 3 TAPDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG 81 (126)
Q Consensus 3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v 81 (126)
+.+.+.+++++++.|+++++.+.+.|+++ ++.+..|+||+|+|+.++.. . ++.+|+.+|+.++||.|
T Consensus 267 l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~~i~~~~~---~---------~~~~~~~~ll~~~gv~v 334 (373)
T PRK07324 267 LEHRDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKLDVD---M---------PSEDFCLKLLKETGVLL 334 (373)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceEEEEEEeCCC---C---------CHHHHHHHHHHhcCEEE
Confidence 45567899999999999999999999887 68888999999999999753 1 47789999888899999
Q ss_pred eCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 82 IPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 82 ~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
.||+.|+. ++|+||+|+.+.+.+++|+++|.+++++
T Consensus 335 ~pg~~F~~-------~~~iRis~~~~~~~l~~~l~rl~~~l~~ 370 (373)
T PRK07324 335 VPGNRFDL-------EGHVRIGYCCDTETLKKGLKKLSEFLRE 370 (373)
T ss_pred ECccccCC-------CCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 99999963 4699999999899999999999998864
No 18
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=99.71 E-value=3.1e-16 Score=119.81 Aligned_cols=105 Identities=23% Similarity=0.323 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
.|++.+++.|+++|+.+.+.|+++|+++.+|+||||+|++++... +. .......+++..++.++||.|.||+.|
T Consensus 324 ~~l~~~~~~l~~rr~~l~~~L~~~gi~~~~~~~g~flwi~l~~~~---~~---~~~~~~~~l~~~ll~~~gV~v~PG~~f 397 (468)
T PLN02450 324 NYLEENQKRLKQRQKKLVSGLEAAGIKCLKSNAGLFCWVDMRHLL---KS---NTFEAEMELWKKIVYEVKLNISPGSSC 397 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCceEEEEEEchHhc---Cc---CCchHHHHHHHHHHHhCCEEEeCcccc
Confidence 488999999999999999999988999999999999999997531 10 001124567888887899999999999
Q ss_pred ccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788 88 YSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN 123 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~ 123 (126)
+.. .++|+|++|+. +++.+++|+++|.++++
T Consensus 398 ~~~-----~~g~~Rl~f~~~~~~~l~~~l~ri~~~l~ 429 (468)
T PLN02450 398 HCT-----EPGWFRVCFANMSEETLDLAMKRLKSFVE 429 (468)
T ss_pred CCC-----CCCEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 753 47899999996 88999999999998876
No 19
>PRK06207 aspartate aminotransferase; Provisional
Probab=99.71 E-value=1.9e-16 Score=118.89 Aligned_cols=105 Identities=14% Similarity=0.209 Sum_probs=88.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788 4 APDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI 82 (126)
Q Consensus 4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~ 82 (126)
..++.|+++.++.++++|+.+.+.|+++ ++++..|+||+|+|++++... . ++.+|+..|+.++||.|.
T Consensus 297 ~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~fl~~~l~~~~--~---------~~~~~~~~l~~~~gV~v~ 365 (405)
T PRK06207 297 SEPDGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSYLFPRLPRLA--V---------SLHDFVKILRLQAGVIVT 365 (405)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEeCcccC--C---------CHHHHHHHHHHhcCEEEe
Confidence 3345688888999999999999999887 788889999999999998521 1 366788887767899999
Q ss_pred CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
||+.|+.. .++++||+|+.+.+.+++|+++|.+++++
T Consensus 366 pG~~F~~~-----~~~~~Ris~~~~~~~l~~al~rl~~~l~~ 402 (405)
T PRK06207 366 PGTEFSPH-----TADSIRLNFSQDHAAAVAAAERIAQLIER 402 (405)
T ss_pred CchHhCCC-----CCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 99999753 46899999999889999999999998764
No 20
>PRK07777 aminotransferase; Validated
Probab=99.70 E-value=2.4e-16 Score=117.43 Aligned_cols=109 Identities=29% Similarity=0.500 Sum_probs=90.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788 4 APDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP 83 (126)
Q Consensus 4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p 83 (126)
...+.|++++++.|+++++.+.+.|++.++++.+|+||||+|++++... .. ++.+|++.|+++.||.|.|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~--~~--------~~~~~~~~l~~~~gv~v~p 347 (387)
T PRK07777 278 DHEDAWVAALRDSLQAKRDRLAAGLAEAGFEVHDSAGTYFLCADPRPLG--YD--------DGTEFCRALPERVGVAAIP 347 (387)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCcceEEEecccccC--CC--------CHHHHHHHHHHhCCEEEeC
Confidence 3456899999999999999999999988888889999999999986421 01 3678999987788999999
Q ss_pred CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
|+.|+... ..+++++||+|+.+++.+++|+++|.++..+
T Consensus 348 g~~f~~~~--~~~~~~~Ri~~~~~~~~l~~~l~~l~~~~~~ 386 (387)
T PRK07777 348 MSVFYDPA--DAWNHLVRFAFCKRDDTLDEAIRRLRALRGR 386 (387)
T ss_pred chHhCCCC--cCCCCeEEEEecCCHHHHHHHHHHHHHHhcC
Confidence 99997532 1246899999999899999999999887643
No 21
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.70 E-value=2e-16 Score=119.71 Aligned_cols=105 Identities=17% Similarity=0.257 Sum_probs=87.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhC-CCcc-cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788 6 DKCYFYTISEELRPKREILADALDKA-GMVP-VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP 83 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p 83 (126)
.+.|++++++.|+++|+.+.+.|+++ ++.+ ..|+||||+|++++... ++ +..++.+|+..|+.++||.+.|
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v~l~~~~--~~-----~~~~~~~~~~~ll~~~gV~v~p 390 (430)
T PLN00145 318 KEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLSC--LS-----GIKDDMDFCCKLAKEESVVVLP 390 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEEeccChhh--cC-----CCCCHHHHHHHHHHhCCEEEeC
Confidence 46899999999999999999999887 7775 58999999999997421 00 0013667888888899999999
Q ss_pred CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
|+.|+. ++|+||+|+.+.+.+++|+++|.+++.+
T Consensus 391 G~~fg~-------~~~lRis~~~~~~~l~~al~rl~~~~~~ 424 (430)
T PLN00145 391 GSALGM-------KNWLRITFAIDPPSLEDGLERLKSFCLR 424 (430)
T ss_pred ccccCC-------CCeEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 999963 5899999999899999999999998874
No 22
>PLN02231 alanine transaminase
Probab=99.70 E-value=2e-16 Score=122.40 Aligned_cols=112 Identities=15% Similarity=0.206 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 9 YFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 9 ~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
|.+.+++.|++|++++.+.|+++ |+++..|+||||+|++++.....++........++..++..|+.+.||.++||+.|
T Consensus 415 ~~~~i~~~~~~r~~~l~~~L~~~~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~F 494 (534)
T PLN02231 415 EKDGILSSLARRAKTLEDALNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGF 494 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCccc
Confidence 45578999999999999999988 89999999999999766421000000000000124557788888899999999999
Q ss_pred ccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 88 YSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
+.. .+..+||++|+.+++.+++|++||.+++++
T Consensus 495 g~~----~g~~~~Rit~~~~~e~l~eal~RL~~~~~~ 527 (534)
T PLN02231 495 GQV----PGTWHFRCTILPQEDKIPAIVSRLTEFHKS 527 (534)
T ss_pred CCC----CCCCeEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 863 256789999998999999999999988763
No 23
>PRK08175 aminotransferase; Validated
Probab=99.70 E-value=3.7e-16 Score=116.80 Aligned_cols=108 Identities=19% Similarity=0.340 Sum_probs=90.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788 3 TAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI 82 (126)
Q Consensus 3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~ 82 (126)
+.+.+.|++.++..|+++++++.+.|+++++.+..|+||+|+|++++...... ++.+++..+++++||.|.
T Consensus 282 l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~~g~~i~i~l~~~~~~~---------~~~~~~~~l~~~~gv~v~ 352 (395)
T PRK08175 282 LEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKIPEPYAAM---------GSLEFAKKLLNEAKVCVS 352 (395)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEEEEECCcccCCC---------CHHHHHHHHHHhCCEEEe
Confidence 44567899999999999999999999988888888999999999998631000 367888887778999999
Q ss_pred CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
||+.|+.. +++++||+|+.+.+.+++|+++|.+++++
T Consensus 353 p~~~f~~~-----~~~~lRis~~~~~~~~~~al~~l~~~l~~ 389 (395)
T PRK08175 353 PGIGFGDY-----GDTHVRFALIENRDRIRQAIRGIKAMFRA 389 (395)
T ss_pred CchhhCcC-----CCCeEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 99999743 46799999998889999999999988764
No 24
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=99.70 E-value=3.4e-16 Score=117.50 Aligned_cols=100 Identities=17% Similarity=0.229 Sum_probs=86.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
.+.|++++++.|+++|+.+.+.|+++++.+..|+||+|+|++++.. + ++.+++..++++.||.+.||+
T Consensus 310 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~g~~f~wi~~~~~---~---------~~~~~~~~l~~~~gv~v~pg~ 377 (409)
T PRK07590 310 GKAQIKELIDYYMENAKIIREGLESAGFEVYGGVNAPYIWVKTPDG---M---------SSWDFFDKLLQEANVVGTPGS 377 (409)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCcceEEEEECCCC---C---------CHHHHHHHHHHHCCEEEeChh
Confidence 4579999999999999999999998888888899999999999853 1 366788888778899999999
Q ss_pred CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788 86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~ 122 (126)
.|+.. +.+++||+++.+++.+++++++|.+++
T Consensus 378 ~f~~~-----~~~~iRi~~~~~~~~l~~~l~rl~~~~ 409 (409)
T PRK07590 378 GFGPS-----GEGYFRLSAFGSRENVLEAMERIKKAL 409 (409)
T ss_pred HhCCC-----CCCEEEEEccCCHHHHHHHHHHHHhhC
Confidence 99743 468999998778899999999998753
No 25
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=99.70 E-value=3.9e-16 Score=117.92 Aligned_cols=99 Identities=15% Similarity=0.097 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
+.|++++++.|+++|+.+.+.|+++++.+..|+||||+|++++. ++.+++..|. ++||.|.||+.
T Consensus 332 ~~~l~~~~~~~~~~r~~~~~~L~~~~~~~~~p~gg~f~~~~l~~--------------~~~~~~~~l~-~~gV~v~pg~~ 396 (431)
T PRK15481 332 QARLAQARLFYAQRRQKLARALQQYGIAIPSPGDGLNLWLPLDT--------------DSQATALTLA-KSGWLVREGEA 396 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCeEEEEEECCC--------------CHHHHHHHHH-HCCcEEecCCc
Confidence 46899999999999999999999888888899999999999974 2557888865 78999999999
Q ss_pred cccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788 87 FYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNK 124 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~ 124 (126)
|+... ..+++|+||+. +++++++++++|.+++++
T Consensus 397 f~~~~----~~~~iRis~~~~~~~~i~~~~~~l~~~~~~ 431 (431)
T PRK15481 397 FGVSA----PSHGLRITLSTLNDAEINRLAADLHQALNR 431 (431)
T ss_pred cccCC----CCCeEEEEcCCCChHHHHHHHHHHHHHhcC
Confidence 97532 35799999997 889999999999988764
No 26
>PRK07681 aspartate aminotransferase; Provisional
Probab=99.70 E-value=3.4e-16 Score=117.16 Aligned_cols=101 Identities=19% Similarity=0.293 Sum_probs=87.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788 3 TAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI 82 (126)
Q Consensus 3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~ 82 (126)
+.+.+.|++++++.|+++++.+.+.|+++|+++..|+||+|+|++++.. . ++.+++..++.++||.|.
T Consensus 284 l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~g~f~~~~l~~~---~---------~~~~~~~~l~~~~gv~v~ 351 (399)
T PRK07681 284 LRNGAAFCEKNRGIYQERRDTLVDGFRTFGWNVDKPAGSMFVWAEIPKG---W---------TSLSFAYALMDRANVVVT 351 (399)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeeEEEEECCCC---C---------CHHHHHHHHHHhCCEEEe
Confidence 3455679999999999999999999998888888899999999999853 1 367888998866999999
Q ss_pred CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788 83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQT 120 (126)
Q Consensus 83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~ 120 (126)
||+.|+.. +++|+|++|+.+.+++++++++|.+
T Consensus 352 pg~~f~~~-----~~~~iRis~~~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 352 PGHAFGPH-----GEGFVRIALVQDEEVLQQAVENIRN 384 (399)
T ss_pred CChhhCcC-----CCCeEEEEecCCHHHHHHHHHHHHH
Confidence 99999753 4689999999888999999999987
No 27
>PTZ00377 alanine aminotransferase; Provisional
Probab=99.69 E-value=3.7e-16 Score=119.63 Aligned_cols=111 Identities=16% Similarity=0.235 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788 10 FYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY 88 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~ 88 (126)
++++++.|++||+.+.+.|+++ |+++..|+||||+|++++...............++..++..++.+.||.++||+.|+
T Consensus 364 ~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~ 443 (481)
T PTZ00377 364 RDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFG 443 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccC
Confidence 3444456899999999999988 899999999999998875210000000000011245677778889999999999998
Q ss_pred cCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 89 SDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 89 ~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
.. .+.+|+|+||+.+++++++++++|.+++++
T Consensus 444 ~~----~~~~~~Rls~~~~~e~l~~~l~rl~~~~~~ 475 (481)
T PTZ00377 444 QK----PGTYHFRITILPPEEQIEEMVKKIKEFHES 475 (481)
T ss_pred CC----CCCCEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 53 246799999998788999999999988763
No 28
>PRK05957 aspartate aminotransferase; Provisional
Probab=99.69 E-value=4.5e-16 Score=116.17 Aligned_cols=104 Identities=18% Similarity=0.251 Sum_probs=88.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhC-C-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788 4 APDKCYFYTISEELRPKREILADALDKA-G-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG 81 (126)
Q Consensus 4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v 81 (126)
.....|+++.++.|+++|+.+.+.|+++ + +.+.+|+||||+|++++.. + ++.+++..|+++.||.+
T Consensus 279 ~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~~~~~~~~---~---------~~~~~~~~l~~~~gv~v 346 (389)
T PRK05957 279 QVGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNTD---L---------NDFELVKQLIREYRVAV 346 (389)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEEEEeCCCC---C---------ChHHHHHHHHHHCCEEE
Confidence 3445789999999999999999999887 5 4788999999999999753 2 47789999877789999
Q ss_pred eCCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788 82 IPPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNK 124 (126)
Q Consensus 82 ~pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~ 124 (126)
.||+.|+.. .++|+|++|+. +++.+++|+++|.+.+++
T Consensus 347 ~pg~~f~~~-----~~~~iRis~~~~~~~~l~~~~~~l~~~~~~ 385 (389)
T PRK05957 347 IPGTTFGMK-----NGCYLRIAYGALQKATAKEGIERLVQGLKT 385 (389)
T ss_pred ccchhhCCC-----CCCEEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 999999653 35799999986 889999999999998875
No 29
>PLN02656 tyrosine transaminase
Probab=99.69 E-value=6e-16 Score=116.29 Aligned_cols=106 Identities=18% Similarity=0.301 Sum_probs=85.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhC-CCc-ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788 6 DKCYFYTISEELRPKREILADALDKA-GMV-PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP 83 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~-~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p 83 (126)
.+.|++++++.|+++|+.+.+.|+++ ++. +..|+||||+|++++.... . +..++.+++..++.++||.+.|
T Consensus 297 ~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~--~-----~~~~~~~~~~~~l~~~gV~v~p 369 (409)
T PLN02656 297 DESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNLSLL--E-----DISDDIDFCFKLAREESVIILP 369 (409)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEEEecchhhc--C-----CCCCHHHHHHHHHHhCCEEEec
Confidence 46799999999999999999999887 344 4689999999999974210 0 0002446666667899999999
Q ss_pred CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhcC
Q psy788 84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKN 125 (126)
Q Consensus 84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~~ 125 (126)
|+.|+. ++|+||+|+.+++.+++|+++|.+++.++
T Consensus 370 g~~fg~-------~~~iRi~~~~~~e~l~eal~rl~~~~~~~ 404 (409)
T PLN02656 370 GTAVGL-------KNWLRITFAADPSSLEEALGRIKSFYLRH 404 (409)
T ss_pred chhcCC-------CCeEEEEeCCCHHHHHHHHHHHHHHHHHh
Confidence 999962 57999999999999999999999988765
No 30
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=99.69 E-value=5e-16 Score=115.58 Aligned_cols=101 Identities=19% Similarity=0.267 Sum_probs=86.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788 3 TAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI 82 (126)
Q Consensus 3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~ 82 (126)
+.+.+.|++++++.|+++++.+.+.|++.++++..|+||||+|++++.. . ++.+++..|++++||.+.
T Consensus 284 l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~~~~~---~---------~~~~l~~~ll~~~gi~v~ 351 (385)
T PRK09276 284 LNGPQEVVEELRKIYQERRDILVEGLRKLGLEVEPPKATFYVWAPVPKG---Y---------TSAEFATLLLDKAGVVVT 351 (385)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEECCCC---C---------CHHHHHHHHHHhCCEEEC
Confidence 3445789999999999999999999998888888999999999999853 1 367888888777899999
Q ss_pred CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788 83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQT 120 (126)
Q Consensus 83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~ 120 (126)
||+.|+.. +++++|++|+.+++.+.+++++|.+
T Consensus 352 ~g~~f~~~-----~~~~~Ris~~~~~~~l~~~l~~l~~ 384 (385)
T PRK09276 352 PGNGFGEY-----GEGYFRIALTVPDERIEEAVERIKK 384 (385)
T ss_pred CchhhCCC-----CCCeEEEEeCCCHHHHHHHHHHHhh
Confidence 99999643 4679999999888999999999865
No 31
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.69 E-value=6.1e-16 Score=114.76 Aligned_cols=105 Identities=25% Similarity=0.425 Sum_probs=89.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788 3 TAPDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG 81 (126)
Q Consensus 3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v 81 (126)
+...+.|++++++.++++++.+.+.|+++ ++++..|+||+|+|++++... ++.+++..|+.+.||.+
T Consensus 277 l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~~~~~~l~~~~------------~~~~~~~~ll~~~gV~v 344 (382)
T PRK06108 277 LDEGEDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAMYAFFRIPGVT------------DSLALAKRLVDEAGLGL 344 (382)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCCCC------------CHHHHHHHHHHhCCEEE
Confidence 34456789999999999999999999887 788889999999999997531 36688888877889999
Q ss_pred eCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 82 IPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 82 ~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
.||+.|+.. +.+++|++|+.+++++++++++|.+++++
T Consensus 345 ~pg~~f~~~-----~~~~~Ris~~~~~~~l~~~l~~l~~~l~~ 382 (382)
T PRK06108 345 APGTAFGPG-----GEGFLRWCFARDPARLDEAVERLRRFLAR 382 (382)
T ss_pred eCchhhCCC-----CCCEEEEEecCCHHHHHHHHHHHHHHHhC
Confidence 999999642 46899999999889999999999988753
No 32
>PRK08068 transaminase; Reviewed
Probab=99.68 E-value=5.9e-16 Score=115.46 Aligned_cols=101 Identities=19% Similarity=0.298 Sum_probs=87.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788 4 APDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP 83 (126)
Q Consensus 4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p 83 (126)
..+..|++++++.|+++|+.+.+.|++.|+.+.+|+||||+|++++.. . ++.++++.|+.++||.|.|
T Consensus 286 ~~~~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~~~~g~~~~~v~~~~~---~---------~~~~~~~~l~~~~gi~v~p 353 (389)
T PRK08068 286 LSDQSCVAELVARYESRRNAFISACREIGWEVDAPKGSFFAWMPVPKG---Y---------TSEQFADLLLEKAHVAVAP 353 (389)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeEEEEEECCCC---C---------CHHHHHHHHHHhCCEEEec
Confidence 345589999999999999999999988888888999999999999853 1 3678999987668999999
Q ss_pred CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHh
Q psy788 84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW 121 (126)
Q Consensus 84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~ 121 (126)
|+.|+.. +.+++|++|+.+++.+++++++|.++
T Consensus 354 g~~f~~~-----~~~~iRi~~~~~~~~l~~al~~l~~~ 386 (389)
T PRK08068 354 GNGFGEH-----GEGYVRVGLLTDEERLREAVERIGKL 386 (389)
T ss_pred chHhCcc-----CCCeEEEEEcCCHHHHHHHHHHHHHh
Confidence 9999743 46899999998889999999999764
No 33
>PRK08361 aspartate aminotransferase; Provisional
Probab=99.68 E-value=8.8e-16 Score=114.61 Aligned_cols=101 Identities=21% Similarity=0.384 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 8 CYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
.|++++++.|+++++.+.+.|++. ++++..|+||||+|++++... + ++.+++..|++++||.|.||+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~~~~~l~~~~--~---------~~~~l~~~l~~~~gv~v~pg~~ 357 (391)
T PRK08361 289 KAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFANIDETG--M---------SSEDFAEWLLEKARVVVIPGTA 357 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEEEEEEEECCCCC--C---------CHHHHHHHHHHhCCEEEcCchh
Confidence 579999999999999999999987 788899999999999997421 1 3678888877678999999999
Q ss_pred cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
|+.. +++|+|++|+.+++.+++|+++|.+.+++
T Consensus 358 f~~~-----~~~~iRi~~~~~~~~l~~al~~l~~~l~~ 390 (391)
T PRK08361 358 FGKA-----GEGYIRISYATSKEKLIEAMERMEKALEE 390 (391)
T ss_pred hCCC-----CCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 9753 46899999999888999999999988764
No 34
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=99.68 E-value=9.5e-16 Score=114.53 Aligned_cols=106 Identities=22% Similarity=0.369 Sum_probs=88.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788 4 APDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP 83 (126)
Q Consensus 4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p 83 (126)
.+...+...+++.|+++|+.+.+.|+++++++..|+||||+|++++... . .++.++++.++.+.||.+.|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg~~~~~~l~~~~---~-------~~~~~~~~~l~~~~gv~v~p 352 (391)
T PRK07309 283 TNGKDDALPMKKEYIKRRDYIIEKMTDLGFKIIKPDGAFYIFAKIPAGY---N-------QDSFKFLQDFARKKAVAFIP 352 (391)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEECCCCC---C-------CCHHHHHHHHHHhCCEEEeC
Confidence 3444566788999999999999999988889999999999999997531 1 03667888877789999999
Q ss_pred CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
|+.|+.. +.+|+|++|+.+.+.+++++++|.+++++
T Consensus 353 g~~f~~~-----~~~~iRi~~~~~~~~l~~~i~~l~~~~~~ 388 (391)
T PRK07309 353 GAAFGPY-----GEGYVRLSYAASMETIKEAMKRLKEYMEE 388 (391)
T ss_pred chhhCCC-----CCCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 9999753 46899999998888999999999988764
No 35
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=99.68 E-value=1.2e-15 Score=114.15 Aligned_cols=106 Identities=20% Similarity=0.304 Sum_probs=88.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 6 DKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
.+.|++++++.|+++|+.+.+.|+++ |+.+..|+||+|+|++++... ++ + ..++.+++..++.++||.|.||
T Consensus 294 ~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~--~~--~---~~~~~~~~~~l~~~~gI~v~pg 366 (401)
T TIGR01264 294 PQEYFDGTLSVLESNAMLCYGALAAVPGLRPVMPSGAMYMMVGIEMEH--FP--E---FKNDVEFTERLVAEQSVFCLPG 366 (401)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeeEEEEEecccc--cC--C---CCCHHHHHHHHHHhCCEEEeCc
Confidence 46899999999999999999999988 778888999999999986420 00 0 0035678888777899999999
Q ss_pred CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhcC
Q psy788 85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKN 125 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~~ 125 (126)
+.|+. ++++|++|+.+.+.+++|+++|.++++++
T Consensus 367 ~~f~~-------~~~iRis~~~~~~~l~~~l~rl~~~~~~~ 400 (401)
T TIGR01264 367 SCFEY-------PGFFRVVLTVPVVMMEEACSRIQEFCERH 400 (401)
T ss_pred hhcCC-------CCeEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence 99952 57999999998899999999999998764
No 36
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.68 E-value=7.9e-16 Score=114.46 Aligned_cols=101 Identities=21% Similarity=0.270 Sum_probs=87.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788 3 TAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI 82 (126)
Q Consensus 3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~ 82 (126)
+.+.+.|++++++.|+++++.+.+.|+++|+++..|+||+|+|++++.. + ++.+|+.+++.++||.|.
T Consensus 282 l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~---~---------~~~~~~~~ll~~~gi~v~ 349 (383)
T TIGR03540 282 LNGPQDVVKEIRKIYQRRRDLLLEALKKIGIDVEKPKATFYVWVPVPEG---Y---------TSAEFAARLLEETGVVVT 349 (383)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEecCCCcceEEEEECCCC---C---------CHHHHHHHHHHHCCEEEe
Confidence 3455789999999999999999999998888888999999999999853 2 367888887778899999
Q ss_pred CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788 83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQT 120 (126)
Q Consensus 83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~ 120 (126)
||+.|+.. +.+++|++|+.+.+.+++++++|.+
T Consensus 350 ~g~~f~~~-----~~~~~Ris~~~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 350 PGVGFGEY-----GEGYIRISLTVPDERLEEAVARIKK 382 (383)
T ss_pred cchhhCcc-----CCCeEEEEecCCHHHHHHHHHHHhh
Confidence 99999643 3689999999888999999999864
No 37
>PRK07568 aspartate aminotransferase; Provisional
Probab=99.68 E-value=9.4e-16 Score=114.40 Aligned_cols=107 Identities=31% Similarity=0.559 Sum_probs=88.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHh-----
Q psy788 3 TAPDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKN----- 76 (126)
Q Consensus 3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----- 76 (126)
+...+.|++++++.|+++++.+.+.|+++ ++.+..|+||||+|++++.. ++.+++.+++.+
T Consensus 280 l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~l~~~-------------~~~~~~~~l~~~~~~~~ 346 (397)
T PRK07568 280 LDTPESYFDEVREEYKKRRDILYEELNKIPGVVCEKPKGAFYIIAKLPVD-------------DAEDFAKWLLTDFNYNG 346 (397)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCcceEEEEecCCC-------------CHHHHHHHHHhhccccc
Confidence 34457899999999999999999999887 78888999999999999742 366788887654
Q ss_pred CCeeEeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 77 VKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 77 ~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
.||.+.||+.|+... ..+.+++||+|+.+.+.+++++++|.+++++
T Consensus 347 ~gv~v~pg~~f~~~~--~~~~~~iRls~~~~~~~~~~~~~~l~~~l~~ 392 (397)
T PRK07568 347 ETVMVAPASGFYATP--GLGKNEIRIAYVLNEEDLKRAMEILKEALEK 392 (397)
T ss_pred ceEEEeCchHhcCCC--CCCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 699999999996431 0135799999998789999999999988764
No 38
>PRK07337 aminotransferase; Validated
Probab=99.67 E-value=1.3e-15 Score=113.52 Aligned_cols=104 Identities=19% Similarity=0.317 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcc-cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 8 CYFYTISEELRPKREILADALDKAGMVP-VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
.+++++++.|+++|+.+.+.|+++++.+ ..|+||+|+|++++.... + +..++.+|+.+++.++||.|.||+.
T Consensus 283 ~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~----~---~~~~~~~~~~~ll~~~gv~v~pg~~ 355 (388)
T PRK07337 283 AIYERRRAEFKRRRDFIVPALESLGFKVPVMPDGAFYVYADCRGVAH----P---AAGDSAALTQAMLHDAGVVLVPGRD 355 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCeeEEEEEecccccC----C---CCCCHHHHHHHHHHhCCEEEeCchh
Confidence 5678899999999999999999887664 579999999999975210 0 0013678888877889999999999
Q ss_pred cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788 87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~ 122 (126)
|+.. .+.+|+|++|+.+.+.+++|+++|.+++
T Consensus 356 f~~~----~~~~~~Ri~~~~~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 356 FGPH----APRDYIRLSYATSMSRLEEAVARLGKLF 387 (388)
T ss_pred hCCC----CCCCEEEEEecCCHHHHHHHHHHHHHHh
Confidence 9753 2468999999998899999999998765
No 39
>PRK07683 aminotransferase A; Validated
Probab=99.67 E-value=1.2e-15 Score=113.81 Aligned_cols=106 Identities=21% Similarity=0.347 Sum_probs=90.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788 3 TAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI 82 (126)
Q Consensus 3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~ 82 (126)
+.+.+.|++++++.|+++++.+.+.|.+.++.+..|+||||+|+.++... . ++.+++..++.++||.+.
T Consensus 278 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~ll~~~gI~v~ 346 (387)
T PRK07683 278 LTAGKDDAKMMRHQYKKRRDYVYNRLISMGLDVEKPTGAFYLFPSIGHFT--M---------SSFDFALDLVEEAGLAVV 346 (387)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCeeEEEEEecccCC--C---------CHHHHHHHHHHhCCEEEc
Confidence 34455789999999999999999999888888899999999999987521 1 366788777788999999
Q ss_pred CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
||+.|+.. +++++||+++.+++++++|+++|.+++.+
T Consensus 347 pg~~f~~~-----~~~~~Ri~~~~~~~~~~~al~~l~~~l~~ 383 (387)
T PRK07683 347 PGSAFSEY-----GEGYVRLSYAYSIETLKEGLDRLEAFLQQ 383 (387)
T ss_pred CchhhCCC-----CCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 99999743 46899999999899999999999988763
No 40
>PRK08960 hypothetical protein; Provisional
Probab=99.67 E-value=1.4e-15 Score=113.43 Aligned_cols=103 Identities=18% Similarity=0.289 Sum_probs=86.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCCCcc-cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 6 DKCYFYTISEELRPKREILADALDKAGMVP-VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
.+.|+.++++.|+++|+.+.+.|+++|+.+ ..|+||+|+|+++++.. . ++.+|+..++.++||.|.||
T Consensus 283 ~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~f~~~~~~~~~--~---------~~~~~~~~ll~~~gi~v~pg 351 (387)
T PRK08960 283 TLAILEARRAEFARRRDFLLPALRELGFGIAVEPQGAFYLYADISAFG--G---------DAFAFCRHFLETEHVAFTPG 351 (387)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCeeEEEEEeccccC--C---------CHHHHHHHHHHhCCEEEcCc
Confidence 457999999999999999999999887665 57999999999998521 1 36788888777899999999
Q ss_pred CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788 85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN 123 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~ 123 (126)
+.|+.. ...+|+|++|+.+.+.+++|+++|.++++
T Consensus 352 ~~f~~~----~~~~~iRi~~~~~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 352 LDFGRH----QAGQHVRFAYTQSLPRLQEAVERIARGLR 386 (387)
T ss_pred hHhCCC----CCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 999753 13579999999988999999999988764
No 41
>PRK05942 aspartate aminotransferase; Provisional
Probab=99.67 E-value=1.2e-15 Score=114.06 Aligned_cols=102 Identities=19% Similarity=0.238 Sum_probs=86.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788 3 TAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI 82 (126)
Q Consensus 3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~ 82 (126)
++..+.|++++++.|+++++.+.+.|++.++++..|+||||+|++++.. . ++.+++..++.++||.|.
T Consensus 288 l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~f~~~~~~~~---~---------~~~~~~~~~l~~~gV~v~ 355 (394)
T PRK05942 288 LQLPDSYLQQVQERYRTRRDFLIQGLGELGWNIPPTKATMYLWVPCPVG---M---------GSTDFALNVLQKTGVVVT 355 (394)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeeEEEEECCCC---C---------CHHHHHHHHHHHCCEEEe
Confidence 3445679999999999999999999988888888999999999999853 1 356777777778999999
Q ss_pred CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHh
Q psy788 83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW 121 (126)
Q Consensus 83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~ 121 (126)
||+.|+.. +++|+|++|+.+.+.+.+++++|.++
T Consensus 356 ~g~~f~~~-----~~~~iRis~~~~~~~l~~~l~~l~~~ 389 (394)
T PRK05942 356 PGNAFGEG-----GEGYVRISLIADCDRLGEALDRLKQA 389 (394)
T ss_pred CChhhCcC-----CCCeEEEEecCCHHHHHHHHHHHHHh
Confidence 99999743 46899999998889999999999765
No 42
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=99.67 E-value=1.5e-15 Score=114.21 Aligned_cols=105 Identities=20% Similarity=0.356 Sum_probs=87.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 6 DKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
.+.|++++++.|+++|+.+.+.|+++ ++.+..|+||+|+|++++... +. +..++.++++.|++++||.+.||
T Consensus 303 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~f~~~~l~~~~--~~-----~~~~~~~~~~~ll~~~gV~v~pg 375 (412)
T PTZ00433 303 PQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMFLMSRLDLEK--FR-----DIKSDVEFYEKLLEEENVQVLPG 375 (412)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeEEEEEEechhh--cC-----CCCCHHHHHHHHHHhcCEEEeCc
Confidence 46899999999999999999999886 788889999999999997421 00 00035688888876789999999
Q ss_pred CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
+.|+. .+|+|++|+.+++.+++|+++|.+++++
T Consensus 376 ~~f~~-------~~~iRis~~~~~e~l~~al~~l~~~~~~ 408 (412)
T PTZ00433 376 EIFHM-------PGFTRLTISRPVEVLREAVERIKAFCER 408 (412)
T ss_pred cccCC-------CCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 99963 4799999999888999999999998763
No 43
>KOG0257|consensus
Probab=99.67 E-value=5.2e-17 Score=119.65 Aligned_cols=112 Identities=38% Similarity=0.670 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccC-CCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLD-TESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
.++..+.+.|++||+++.+.|+++|+++..|+|+||+|++++... .++.. ...+.+++..++.+++.+.||+++|++.
T Consensus 303 y~~~~~~~~y~~krdil~k~L~~lg~~v~~p~gayyl~adfs~~~-~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~sa 381 (420)
T KOG0257|consen 303 YFITELVKEYKEKRDILAKALEELGLKVTGPEGAYYLWADFSLAK-SWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSA 381 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceEEEEeccccc-cCCcchhhccCCCceeeehhhhccCcEEEeCchh
Confidence 456669999999999999999999999999999999999999321 12221 1223446788999999999999999999
Q ss_pred cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788 87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQT 120 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~ 120 (126)
||++++.....+++|++|+.+++.++.|+++|..
T Consensus 382 F~s~~~~~~~~~~~r~~~~k~~~~L~~a~e~l~~ 415 (420)
T KOG0257|consen 382 FGSREHIKVAERLVRFCFCKADETLRKAIERLKK 415 (420)
T ss_pred cCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 9987532223689999999999999999999983
No 44
>PRK08363 alanine aminotransferase; Validated
Probab=99.67 E-value=1.4e-15 Score=113.79 Aligned_cols=107 Identities=17% Similarity=0.289 Sum_probs=88.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788 3 TAPDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG 81 (126)
Q Consensus 3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v 81 (126)
|.+.++|++++++.|+++++.+.+.|.++ ++.+..|+||||+|++++... .. ++.+++..++.++||.|
T Consensus 287 l~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~l~~~~--~~--------~~~~~~~~~l~~~gV~v 356 (398)
T PRK08363 287 LTGPMDYLEEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPRIEEGP--WK--------DDKEFVLDVLHEAHVLF 356 (398)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHhcCCCCEecCCCeEEEEEEEeccCC--CC--------CHHHHHHHHHHhCCEEE
Confidence 34456899999999999999999999887 788889999999999997521 00 25567666678999999
Q ss_pred eCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 82 IPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 82 ~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
.||+.|+.. +++|+|++|+.+++.+++++++|.+++++
T Consensus 357 ~~g~~f~~~-----~~~~iRis~~~~~~~l~~~l~~l~~~~~~ 394 (398)
T PRK08363 357 VHGSGFGEY-----GAGHFRLVFLPPVEILEEAMDRFEEFMRE 394 (398)
T ss_pred eCchhhCCC-----CCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 999999743 46899999988889999999999988764
No 45
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=99.67 E-value=2e-15 Score=113.16 Aligned_cols=105 Identities=19% Similarity=0.319 Sum_probs=87.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 6 DKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
.+.|++++++.|+++|+.+.+.|+.+ |+.+..|+||+|+|++++... .+ +..++.+++..+++++||.|.||
T Consensus 296 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~--~~-----~~~~~~~~~~~l~~~~gv~v~pg 368 (403)
T TIGR01265 296 PQEFFDGKISVLKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLELEL--FP-----EIKDDVDFCEKLVREESVICLPG 368 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCceeEEEEeccccc--cC-----CCCCHHHHHHHHHHhCCEEEeCc
Confidence 46899999999999999999999887 788788999999999997531 00 00036688888777899999999
Q ss_pred CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
+.|+. ++|+|++|+.+++.+++|+++|.+++++
T Consensus 369 ~~f~~-------~~~iRis~~~~~~~l~~~l~~l~~~~~~ 401 (403)
T TIGR01265 369 SAFGL-------PNWVRITITVPESMLEEACSRIKEFCER 401 (403)
T ss_pred cccCC-------CCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 99962 5799999999888999999999998864
No 46
>PRK12414 putative aminotransferase; Provisional
Probab=99.66 E-value=1.6e-15 Score=113.02 Aligned_cols=99 Identities=28% Similarity=0.470 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788 9 YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY 88 (126)
Q Consensus 9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~ 88 (126)
++.++++.|+++|+.+.+.|+++|+.+.+|+||||+|++++.... . ++.+++..++.++||.+.||+.|+
T Consensus 285 ~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~gg~~~~~~~~~~~~-~---------~~~~~~~~~l~~~gV~v~pg~~f~ 354 (384)
T PRK12414 285 SYLGLGAFYQRKRDLLARELAGSRFELLPSEGSFFMLARFRHFSD-E---------SDSDFVLRLIRDARVATIPLSAFY 354 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeecCCCcceEEEEcccccCC-C---------CHHHHHHHHHHhCCEEEecchhhc
Confidence 455789999999999999999888888899999999999875210 0 255777667778999999999997
Q ss_pred cCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788 89 SDEHKHLGENLIRYCFFKKDETLREASSILQT 120 (126)
Q Consensus 89 ~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~ 120 (126)
... ...+|+||+|+.+++.+++|+++|.+
T Consensus 355 ~~~---~~~~~iRis~~~~~~~~~~~~~rl~~ 383 (384)
T PRK12414 355 TDG---TDTGLIRLSFSKDDATLVEGARRLCS 383 (384)
T ss_pred CCC---CCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 532 13589999999989999999999975
No 47
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=99.66 E-value=2.1e-15 Score=112.79 Aligned_cols=103 Identities=17% Similarity=0.265 Sum_probs=85.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
.+.|+++.++.|+++|+.+.+.|.++ +.+..|+||+|+|++++. ++.+++..|+.++||.+.||+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~p~~g~f~~~~~~~--------------~~~~~~~~ll~~~gv~v~pg~ 356 (396)
T PRK09147 292 DEAHVRENRALYREKFDAVTPILAPV-LDVQLPDAGFYLWAKVPG--------------DDTEFARRLYADYNVTVLPGS 356 (396)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCeeEEEEEECCC--------------CHHHHHHHHHHhCCEEEeCCc
Confidence 35799999999999999999999875 777889999999999982 266788888778899999999
Q ss_pred CcccCcc-cCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788 86 AFYSDEH-KHLGENLIRYCFFKKDETLREASSILQTWRN 123 (126)
Q Consensus 86 ~f~~~~~-~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~ 123 (126)
.|+.... ...+.+|+||+|+.+++++++++++|.++++
T Consensus 357 ~f~~~~~~~~~~~~~iRi~~~~~~~~l~~~l~rl~~~~~ 395 (396)
T PRK09147 357 YLAREAHGVNPGAGRVRIALVAPLAECVEAAERIVDFCR 395 (396)
T ss_pred cccccccCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhc
Confidence 9974210 0124689999999988999999999998764
No 48
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=99.66 E-value=1.9e-15 Score=116.67 Aligned_cols=104 Identities=19% Similarity=0.296 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 7 KCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
++|+...++.| ++|+.+.+.|+++ |+++..|+||||+|++++.....+. ++.+++..++.++||.|.||+
T Consensus 410 ~~~~~~~~~~~-~~r~~l~~~L~~~~g~~~~~p~g~fy~~~~l~~~~~~~~--------~~~~~~~~ll~~~gV~v~pg~ 480 (517)
T PRK13355 410 KDYLVPGGRVY-EQRELVYNALNAIPGISAVKPKAAFYIFPKIDVKKFNIH--------DDEQFALDLLHDKKVLIVQGT 480 (517)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhcCCCcccCCCCeeeEEEeecCcccCCCC--------CHHHHHHHHHHhCCEEEeCcc
Confidence 46777766665 5689999999888 8999999999999999874210011 356777777889999999999
Q ss_pred CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
.|+.. .++|+|++|+.+++.|++|+++|.+++.+
T Consensus 481 ~F~~~-----~~~~~Ris~~~~~~~l~~a~~rl~~~~~~ 514 (517)
T PRK13355 481 GFNWD-----KPDHFRVVYLPRLEDLEDAMDRLADFFSY 514 (517)
T ss_pred hhCCC-----CcCEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 99753 47899999988999999999999998763
No 49
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.65 E-value=2.8e-15 Score=111.98 Aligned_cols=101 Identities=17% Similarity=0.254 Sum_probs=83.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
.++|+++.++.|+++++.+.+.|+++ +.+..|+||+|+|++++. ++.++++.+++++||.|.||+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~p~gg~f~~~~~~~--------------~~~~~~~~l~~~~gV~v~pg~ 355 (393)
T TIGR03538 291 DEQHVRENRALYREKFAAVLEILGQV-LDLELPDAGFYLWPKVPG--------------DDEAFARALYEEENVTVLPGR 355 (393)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhh-CcccCCCeeEEEEEECCC--------------CHHHHHHHHHHHCCEEEeCCc
Confidence 35799999999999999999999875 667889999999999982 256788887778999999999
Q ss_pred CcccCcc-cCCCCCeEEEEeeCChhHHHHHHHHHHHh
Q psy788 86 AFYSDEH-KHLGENLIRYCFFKKDETLREASSILQTW 121 (126)
Q Consensus 86 ~f~~~~~-~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~ 121 (126)
.|+.... ...+.+++||+|+.+++++++++++|.++
T Consensus 356 ~f~~~~~~~~~~~~~~Ris~~~~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 356 FLAREAEGVNPGEGRVRIALVAPLEECVEAAERIRSF 392 (393)
T ss_pred cccccccCCCCCCCEEEEEecCCHHHHHHHHHHHHHh
Confidence 9864210 01246899999998889999999999875
No 50
>PRK09275 aspartate aminotransferase; Provisional
Probab=99.65 E-value=1.4e-15 Score=117.32 Aligned_cols=114 Identities=11% Similarity=0.150 Sum_probs=87.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCC----CCCchhhHHHHHHHHHhCC
Q psy788 3 TAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDT----ESDKYEDFKFAKWMTKNVK 78 (126)
Q Consensus 3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~g 78 (126)
+...+.|++.+++.|++||+.+.+.|. .++...+|+||||+|++++.......+.. ..+..++.+|+.+|+.+.|
T Consensus 398 l~~~~~~~~~~~~~~~~Rr~~l~~~Lg-~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~g 476 (527)
T PRK09275 398 LDEEDAYKKAMKDIIRRRYKALYEGLG-LPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETG 476 (527)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHcC-CCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCC
Confidence 456678999999999999999988883 23444689999999999975310000000 0011146789999999999
Q ss_pred eeEeCCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788 79 LQGIPPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN 123 (126)
Q Consensus 79 V~v~pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~ 123 (126)
|+++||+.|+. .++++|+||+. +++.+.++.+||.+++.
T Consensus 477 V~v~PG~~Fg~------~~~~vRis~a~~~~~~~~~~~~rl~~~l~ 516 (527)
T PRK09275 477 VVLLPGGGFGG------PEWSVRVSLANLNEEDYAKIGKAIRKLLD 516 (527)
T ss_pred EEEeCchhhCC------CCCeEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 99999999975 35789999996 88999999999998875
No 51
>PLN02187 rooty/superroot1
Probab=99.64 E-value=4.4e-15 Score=113.34 Aligned_cols=105 Identities=18% Similarity=0.283 Sum_probs=85.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCC-Cc-ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788 6 DKCYFYTISEELRPKREILADALDKAG-MV-PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP 83 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g-~~-~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p 83 (126)
.+.|++++++.|+++|+.+.+.|++++ +. +..|+||+|+|++++.... + +..++.+++..++.++||.+.|
T Consensus 332 ~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~~--~-----~~~~~~~~~~~ll~~~gV~v~p 404 (462)
T PLN02187 332 DKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSLM--D-----NIKDDIDFCVKLAREENLVFLP 404 (462)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEEEEeecChhhC--C-----CCCCHHHHHHHHHhhCCEEEEC
Confidence 468999999999999999999999874 33 4579999999999863210 0 0013557777777899999999
Q ss_pred CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
|+.|+. ++|+||+|+.+++.+++|++||.+++++
T Consensus 405 G~~fg~-------~~~iRis~~~~~e~l~~al~rL~~~l~~ 438 (462)
T PLN02187 405 GDALGL-------KNWMRITIGVEAHMLEDALERLKGFCTR 438 (462)
T ss_pred ccccCC-------CCeEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 999962 5899999999999999999999998863
No 52
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=99.63 E-value=8.6e-15 Score=109.75 Aligned_cols=97 Identities=20% Similarity=0.277 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
.++.+.++.|+++++.+.+.|++.++++..|.||+|+|++++.. + ++.+++..++.+.||.+.||+.|
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~f~~v~l~~~---~---------~~~~l~~~l~~~~gv~v~pg~~f 372 (402)
T TIGR03542 305 QPILEAISYYMENARILRKALEAAGFKVYGGEHAPYLWVKTPEG---I---------SSWDFFDFLLYQYHVVGTPGSGF 372 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCceecCCCceeEEEEECCCC---C---------CHHHHHHHHHHhCCEEEeCchhh
Confidence 56788899999999999999988888888889999999999853 2 36688888877789999999999
Q ss_pred ccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHh
Q psy788 88 YSDEHKHLGENLIRYCFFKKDETLREASSILQTW 121 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~ 121 (126)
+.. +.+|+||+++.+++.+++|+++|.++
T Consensus 373 ~~~-----~~~~iRis~~~~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 373 GPS-----GEGFVRFSAFGKRENIVEACERIKEA 401 (402)
T ss_pred CCC-----CCCEEEEEecCCHHHHHHHHHHHHhh
Confidence 643 46899999988889999999999875
No 53
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.62 E-value=9.7e-15 Score=109.79 Aligned_cols=104 Identities=18% Similarity=0.308 Sum_probs=84.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCC-Cc-ccCCCcceEEEEeeCCccc-ccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788 6 DKCYFYTISEELRPKREILADALDKAG-MV-PVIPDGGYFMVADWTQLRP-MLRLDTESDKYEDFKFAKWMTKNVKLQGI 82 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g-~~-~~~p~gg~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~gV~v~ 82 (126)
.+.|+++.++.++++++.+.+.|.+++ .. +..|+||||+|++++.... .+. ++.+++..++.++||.+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~~~~~~~~~--------~~~~~~~~ll~~~gV~v~ 369 (409)
T PLN00143 298 TEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNLLLLEDIE--------DDMEFCLKLAKEESLIIL 369 (409)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEEEEecchhhcCCCC--------CHHHHHHHHHHhCCEEEe
Confidence 457999999999999999999998873 33 3579999999999974210 011 356777777789999999
Q ss_pred CCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 83 PPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 83 pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
||+.|+. ++|+||+|+.+.+++++|++||.+++++
T Consensus 370 pg~~f~~-------~~~iRi~~~~~~~~l~~al~rl~~~l~~ 404 (409)
T PLN00143 370 PGVTVGL-------KNWLRITFAVEQSSLEDGLGRLKSFCGR 404 (409)
T ss_pred CccccCC-------CCeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 9999952 5799999999899999999999998864
No 54
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.62 E-value=7.8e-15 Score=108.08 Aligned_cols=96 Identities=16% Similarity=0.250 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
+.|+++.|+.|+++++.+.+.|.+.|+++..|+||||+|++++.. . ++.++++.|+ ++||.|.||+.
T Consensus 254 ~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~~g~~~~~~~~~~~---~---------~~~~l~~~L~-~~gv~v~~g~~ 320 (350)
T TIGR03537 254 DNHVLERRKIFKRKRDLFIEFFNKVGLEYLYPDATFYLWVKVPSG---I---------DAKDYALRLL-ENGIVVAPGEN 320 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeEEEEEEECCCC---C---------CHHHHHHHHH-HCCEEEcCchh
Confidence 568999999999999999999998888889999999999999853 1 3678889875 68999999999
Q ss_pred cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788 87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQT 120 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~ 120 (126)
|+.. ..+++|++|+.+++++++++++|.+
T Consensus 321 f~~~-----~~~~~Ri~~~~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 321 FGSG-----EEGYVRVALVPTLEECEEALRLWER 349 (350)
T ss_pred hCCC-----CCCEEEEEecCCHHHHHHHHHHHhc
Confidence 9753 3689999998788999999999864
No 55
>PLN02672 methionine S-methyltransferase
Probab=99.61 E-value=1.5e-14 Score=118.33 Aligned_cols=109 Identities=18% Similarity=0.157 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCccc---ccccCCC-CC-chhhHHHHHHHHHhCCeeE
Q psy788 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRP---MLRLDTE-SD-KYEDFKFAKWMTKNVKLQG 81 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~---~~~~~~~-~~-~~~~~~~~~~l~~~~gV~v 81 (126)
..|+.++++.|++||+.+.+.|+++|+++.+|+||||+|++++.... .++.++. .+ ..++.+|+++|+++.||.+
T Consensus 965 ~~~l~e~r~~Lk~rRd~L~e~L~~~Gi~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV 1044 (1082)
T PLN02672 965 LDGVAEQKKILKSRAERLKETLEACGWDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCI 1044 (1082)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEE
Confidence 35788889999999999999999889999999999999998753110 0000000 00 1146789999987889999
Q ss_pred eCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788 82 IPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122 (126)
Q Consensus 82 ~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~ 122 (126)
.||+.|+. ++|+||+|+.+.+.+++++++|.++.
T Consensus 1045 ~PGs~FG~-------~g~~RIsfa~~~e~LeeALerL~kf~ 1078 (1082)
T PLN02672 1045 NSSSWTGI-------PGYCRFSFALEDSEFDRALKAIARFK 1078 (1082)
T ss_pred ecCcccCC-------CCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 99988753 57999999998889999999998764
No 56
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=99.60 E-value=1.9e-14 Score=106.45 Aligned_cols=93 Identities=18% Similarity=0.293 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
++|++++++.|+++++.+.+.|+++|+.+..|+||||+|++++. ++.++++.| .+.||.+.||+.
T Consensus 271 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l-~~~gv~v~pg~~ 335 (364)
T PRK07865 271 DAHVREQRERYARRRAVLRPALEAAGFRVDHSEAGLYLWATRGE--------------DCWDTVAWL-AERGILVAPGDF 335 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCccEEEEEeCCC--------------CHHHHHHHH-HHCCEEEeCccc
Confidence 57899999999999999999999888888899999999998852 245677775 588999999998
Q ss_pred cccCcccCCCCCeEEEEeeCChhHHHHHHHHHH
Q psy788 87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQ 119 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~ 119 (126)
|+.. .++++||+|+.+++++++++++|.
T Consensus 336 f~~~-----~~~~iRi~~~~~~~~~~~~~~~l~ 363 (364)
T PRK07865 336 YGPA-----GAQHVRVALTATDERIAAAVERLA 363 (364)
T ss_pred cCcC-----CCCEEEEEecCCHHHHHHHHHHhh
Confidence 8643 468999999988899999999985
No 57
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=99.60 E-value=9.4e-15 Score=112.58 Aligned_cols=113 Identities=12% Similarity=0.138 Sum_probs=86.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCC----CCCchhhHHHHHHHHHhCCe
Q psy788 4 APDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDT----ESDKYEDFKFAKWMTKNVKL 79 (126)
Q Consensus 4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~gV 79 (126)
.+.+.|++.+++.|++||+.+.+.| ...+...+|+||||+|++++.......+.. ..+..++.+|+.+|+++.||
T Consensus 398 ~~~~~y~~~~~~~~~~R~~~l~~~L-g~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV 476 (521)
T TIGR03801 398 DKENAYKAETKDICRRREKLLFRGL-GLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGI 476 (521)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhc-CCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCE
Confidence 4567899999999999999999998 223334679999999999985321000000 00011467899999999999
Q ss_pred eEeCCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788 80 QGIPPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN 123 (126)
Q Consensus 80 ~v~pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~ 123 (126)
+++||+.|+.. ++++|+||+. +++.++++.++|.+++.
T Consensus 477 ~v~PG~~Fg~~------~~~vRisla~l~~~~~~~~~~rl~~~~~ 515 (521)
T TIGR03801 477 VLLPGGGFGGP------EWSVRVSLANLNEYDYAEIGRAIRKILD 515 (521)
T ss_pred EEeCchhcCCC------CCeEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 99999999852 5689999995 88889999999998774
No 58
>KOG0256|consensus
Probab=99.60 E-value=1.4e-14 Score=106.77 Aligned_cols=107 Identities=24% Similarity=0.352 Sum_probs=89.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
.+.|++..+++++.+++++.+.|++.|++|.+.++|+|+|+++++..... . .....++.+.++.+.|+.+.||+
T Consensus 353 ~~~yl~en~~Rl~~rh~~~~~gLk~lgI~cl~s~AGlF~wvDlr~lL~s~---t---fe~El~Lw~~i~~~vklnlSpG~ 426 (471)
T KOG0256|consen 353 TREYLRENNKRLRIRHRYIVEGLKALGIPCLKSNAGLFCWVDLRKLLTSL---T---FEGELELWERILDNVKLNLSPGS 426 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhcCCceeecCCeeEEEEEhHHhcCcC---C---hHHHHHHHHHHHHhhccccCCCC
Confidence 35789999999999999999999999999999999999999998753211 0 11245788888877799999999
Q ss_pred CcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788 86 AFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN 123 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~ 123 (126)
.|...+ ++|||++|+. .+++++-|++||...+.
T Consensus 427 s~~C~E-----pGWFRvcFAn~~~~t~~~am~Ri~~~~~ 460 (471)
T KOG0256|consen 427 SCHCHE-----PGWFRVCFANMSEETLEVAMRRLKQFLD 460 (471)
T ss_pred cceecC-----CCeEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 999874 8999999998 66777779999998764
No 59
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.59 E-value=2.5e-14 Score=105.74 Aligned_cols=93 Identities=18% Similarity=0.260 Sum_probs=80.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
.+.|++++++.|+++++.+.+.|++.|+.+..|+||||+|++++. ++.+++..| .+.||.|.||+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~p~~~~~~~~~~~~--------------~~~~~~~~l-~~~gV~v~pg~ 328 (357)
T TIGR03539 264 DDGHVAEQKARYAARRAQLKPALEKAGFRIDHSEAGLYLWATRGE--------------DAWDTVDRL-AELGILVAPGD 328 (357)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCccEEEEEECCC--------------CHHHHHHHH-HhCCEEECCcc
Confidence 357899999999999999999998888889999999999999863 255677775 58899999999
Q ss_pred CcccCcccCCCCCeEEEEeeCChhHHHHHHHHH
Q psy788 86 AFYSDEHKHLGENLIRYCFFKKDETLREASSIL 118 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l 118 (126)
.|+.. +++++|++|+.+.+++++++++|
T Consensus 329 ~f~~~-----~~~~iRis~~~~~~~i~~~~~~l 356 (357)
T TIGR03539 329 FYGPA-----GSQHVRVALTATDERIAAAVARL 356 (357)
T ss_pred ccCCC-----CCCeEEEEecCCHHHHHHHHHhh
Confidence 88642 46899999999889999999887
No 60
>KOG0259|consensus
Probab=99.58 E-value=2.8e-14 Score=104.51 Aligned_cols=106 Identities=19% Similarity=0.312 Sum_probs=92.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhC-CCc-ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788 6 DKCYFYTISEELRPKREILADALDKA-GMV-PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP 83 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~-~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p 83 (126)
+++|+...+..++.+-++.++.|+++ ++. +..|+|.||+|+.++.... + +..+|.+|+..|++++.|.+.|
T Consensus 327 p~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s~~--~-----~~~dD~dFc~kL~~Eesv~~LP 399 (447)
T KOG0259|consen 327 PEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNLSLF--P-----DIEDDVDFCQKLAREESVICLP 399 (447)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEeccchhhh--c-----cccccHHHHHHHhhhcceEEec
Confidence 56899999999999999999999998 787 5899999999999975321 0 1126889999999999999999
Q ss_pred CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhcC
Q psy788 84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKN 125 (126)
Q Consensus 84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~~ 125 (126)
|++|+. ++|+|++++.+.+.+++|++||++++.|+
T Consensus 400 G~af~~-------~nw~Ri~i~~~~~~leea~~Rik~Fc~RH 434 (447)
T KOG0259|consen 400 GQAFGL-------KNWLRIVITVEEEMLEEAFSRIKEFCDRH 434 (447)
T ss_pred cccccC-------CCeEEEEEccChHHHHHHHHHHHHHHHhh
Confidence 999984 79999999999999999999999988754
No 61
>PRK09265 aminotransferase AlaT; Validated
Probab=99.58 E-value=4.7e-14 Score=105.80 Aligned_cols=98 Identities=15% Similarity=0.174 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcc
Q psy788 14 SEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEH 92 (126)
Q Consensus 14 r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~ 92 (126)
++.+.++|+.+.+.|+++ ++.+..|+||||+|++++....... ++.+++..++.+.||.|.||+.|+..
T Consensus 303 ~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~~l~~~~~~~~~~~~--------~~~~~~~~~l~~~gv~v~pg~~F~~~-- 372 (404)
T PRK09265 303 GGRLYEQRDRAWELLNAIPGVSCVKPKGALYAFPKLDPKVYPIH--------DDEQFVLDLLLQEKVLLVQGTGFNWP-- 372 (404)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccCCCcceEEEEEecccccCCC--------CHHHHHHHHHHhCCEEEECchhhCCC--
Confidence 356788899999999887 7888999999999999975210000 24444455567999999999999643
Q ss_pred cCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 93 KHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 93 ~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
.++|+|++|+.+.+.+++++++|.+++++
T Consensus 373 ---~~~~~Ri~~~~~~e~l~~~l~rl~~~l~~ 401 (404)
T PRK09265 373 ---EPDHFRIVTLPRVDDLEEAIGRIGRFLSG 401 (404)
T ss_pred ---CCCeEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 36899999988899999999999988763
No 62
>PRK05839 hypothetical protein; Provisional
Probab=99.58 E-value=3.3e-14 Score=105.77 Aligned_cols=95 Identities=18% Similarity=0.289 Sum_probs=79.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
.+.|++++++.|+++|+.+.+.| ++. .|+||+|+|++++. +.+++..|++++||.|.||+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~l---~~~--~p~gg~fi~~~~~~---------------~~~~~~~l~~~~gi~v~pg~ 338 (374)
T PRK05839 279 DDEHAEFFRNIYAKNLKLAREIL---GIT--IPPATFYVWLPVDN---------------DEEFTKKLYQNEGIKVLPGS 338 (374)
T ss_pred cchHHHHHHHHHHHHHHHHHHhc---CCC--CCCeeEEEEEeCCC---------------hHHHHHHHHHHCCEEEeCch
Confidence 36799999999999999988876 333 79999999999863 45788887767999999999
Q ss_pred CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788 86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN 123 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~ 123 (126)
.|+... ..++|+|++|+.+.+.+++++++|.+++.
T Consensus 339 ~f~~~~---~~~~~iRis~~~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 339 FLGRNG---IGKGYVRIALVYDTPKLEKALEIIKTYLE 373 (374)
T ss_pred hhCCCC---CCCCeEEEEecCCHHHHHHHHHHHHHHhh
Confidence 887532 24689999999888999999999998774
No 63
>PRK07550 hypothetical protein; Provisional
Probab=99.58 E-value=4.4e-14 Score=105.30 Aligned_cols=102 Identities=15% Similarity=0.213 Sum_probs=84.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788 3 TAPDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG 81 (126)
Q Consensus 3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v 81 (126)
+...++|++++++.|+++++.+.+.|.++ ++.+ .|.||+|+|++++... . ++.+++..|+++.||.|
T Consensus 281 l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~g~~~~~~~~~~~~--~---------~~~~l~~~l~~~~gv~v 348 (386)
T PRK07550 281 LPNLADWRAGNRAEIARRRDAFRAVFARLPGWEL-LASGAYFAYVRHPFPD--R---------PSREVARRLAKEAGILC 348 (386)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcee-CCCceEEEEecCCCCC--C---------CHHHHHHHHHHhcCEEE
Confidence 34457899999999999999999999886 5654 4779999999997521 1 46789898877899999
Q ss_pred eCCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHh
Q psy788 82 IPPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTW 121 (126)
Q Consensus 82 ~pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~ 121 (126)
.||+.|+.. +.+++||+|+. +++.+++++++|.++
T Consensus 349 ~pg~~f~~~-----~~~~iRis~~~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 349 LPGTMFGPG-----QEGYLRLAFANADVAGIGELVERLRAF 384 (386)
T ss_pred eCchhhCCC-----CCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence 999999643 46899999997 888999999999864
No 64
>PRK05764 aspartate aminotransferase; Provisional
Probab=99.58 E-value=5.4e-14 Score=104.82 Aligned_cols=105 Identities=15% Similarity=0.320 Sum_probs=87.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 6 DKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
.+.|++++++.|+++++.+.+.|+++ |+++..|+||+|+|++++...... ..++.++...++++.||.+.||
T Consensus 286 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~gi~v~~g 358 (393)
T PRK05764 286 PQDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLLGKS-------ITDSLEFAEALLEEAGVAVVPG 358 (393)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCcceEEEEecccccccc-------cCCHHHHHHHHHHhCCEEEccc
Confidence 46899999999999999999999988 889899999999999997531000 0024688888777889999999
Q ss_pred CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
+.|+. .+++|++|+.+++.+++++++|.++++.
T Consensus 359 ~~f~~-------~~~vRis~~~~~~~~~~~i~~l~~~~~~ 391 (393)
T PRK05764 359 IAFGA-------PGYVRLSYATSLEDLEEGLERIERFLES 391 (393)
T ss_pred cccCC-------CCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 98863 5899999999899999999999988763
No 65
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=99.57 E-value=5.2e-14 Score=105.82 Aligned_cols=105 Identities=18% Similarity=0.221 Sum_probs=81.0
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788 8 CYFYT-ISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI 82 (126)
Q Consensus 8 ~~l~~-~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~ 82 (126)
.|+.+ +++.|++|++.+.+.|.+. ++.+..|+||+|+|++++... . ++.++++.+ .++||.|.
T Consensus 300 ~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~gg~fiw~~~~~~~--~---------~~~~~~~~l-~~~gV~v~ 367 (416)
T PRK09440 300 RLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPEGAIFLWLWFKDLP--I---------TTEELYQRL-KARGVLVV 367 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEecCCCceEEEEECCCCC--C---------CHHHHHHHH-HHCCEEEe
Confidence 34444 7899999999999999864 356679999999999998521 1 366788875 58899999
Q ss_pred CCCCcccCccc--CCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 83 PPSAFYSDEHK--HLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 83 pg~~f~~~~~~--~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
||+.|+..... ..+.+|+||||+.+.+++++++++|.+++++
T Consensus 368 pg~~F~~~~~~~~~~~~~~iRis~~~~~~~l~~~i~~l~~~~~~ 411 (416)
T PRK09440 368 PGHYFFPGLDEDWPHAHQCIRMNYVQDDEEIEKGIAILAEEVEK 411 (416)
T ss_pred chHhhCCCCccccCCcCceEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 99999642100 0124699999988889999999999988764
No 66
>PRK06836 aspartate aminotransferase; Provisional
Probab=99.52 E-value=2.2e-13 Score=101.95 Aligned_cols=90 Identities=20% Similarity=0.368 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCccc
Q psy788 14 SEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHK 93 (126)
Q Consensus 14 r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~ 93 (126)
++.|+++|+.+.+.|+++|+.+..|+||||+|+.++.. ++.+++..| .++||.|.||+.|+.
T Consensus 302 ~~~~~~~r~~l~~~L~~~g~~~~~~~gg~~~~~~~~~~-------------~~~~~~~~l-~~~gv~v~~g~~f~~---- 363 (394)
T PRK06836 302 VSIYKRNRDLLYDGLTELGFECVKPQGAFYLFPKSPEE-------------DDVAFCEKA-KKHNLLLVPGSGFGC---- 363 (394)
T ss_pred HHHHHHHHHHHHHHHHhCCCEeecCCceEEEEEeCCCC-------------CHHHHHHHH-HhCCEEEECchhcCC----
Confidence 67899999999999998888889999999999988752 366777765 688999999999963
Q ss_pred CCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 94 HLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 94 ~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
.+++||+|+.+++++++++++|.+++++
T Consensus 364 ---~~~iRi~~~~~~~~~~~~i~~l~~~l~~ 391 (394)
T PRK06836 364 ---PGYFRLSYCVDTETIERSLPAFEKLAKE 391 (394)
T ss_pred ---CCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 4799999998899999999999998864
No 67
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=99.47 E-value=4e-13 Score=98.97 Aligned_cols=91 Identities=24% Similarity=0.386 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
+|++++++.|+++++.+.+.|++.++.+..|++|||+|+.++.. ++.++++.|+++.||.+.||+.|
T Consensus 272 ~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~~L~~~~gi~v~pg~~~ 338 (363)
T PF00155_consen 272 KWLEELRERLRENRDLLREALEEIGITVLPPEAGFFLWVRLDPN-------------DAEELAQELLEEYGILVRPGSYF 338 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSEEEHHSBSSEEEEEESHH-------------HHHHHHHHHHHHHTEEEEEGGGG
T ss_pred cccccchhhHHHHHHHHHHHHHHhhhheeeccCccEEEEEcccc-------------hHHHHHHHHHHhCCEEEEecCCC
Confidence 39999999999999999999998899999999999999999852 36789999886669999999999
Q ss_pred ccCcccCCCCCeEEEEee-CChhHHHHHHHHH
Q psy788 88 YSDEHKHLGENLIRYCFF-KKDETLREASSIL 118 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~-~~~e~i~~~~~~l 118 (126)
+. ++++|++++ .+++++++++++|
T Consensus 339 ~~-------~~~iRi~~a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 339 GV-------PGYIRISLASHSEEDLEEALERL 363 (363)
T ss_dssp TS-------TTEEEEEGGCSCHHHHHHHHHHH
T ss_pred CC-------CCEEEEEeccCCHHHHHHHHhhC
Confidence 74 579999995 4999999999986
No 68
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=99.43 E-value=3.5e-12 Score=93.55 Aligned_cols=94 Identities=12% Similarity=0.116 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
+.|++++++.|+++|+.+.+.|+++|+.+..|.+|.|+|+.++. +.++++.|+ ++||.|.||+.
T Consensus 238 ~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~g~f~~~~~~~---------------~~~~~~~l~-~~gi~v~~~~~ 301 (332)
T PRK06425 238 DYVAKHSLDIMENERSYLINNLEAMGFRAAGDPSANFITFMIPD---------------AHDFYSYLL-KNGILVRLLDD 301 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCceEEEEEcCC---------------HHHHHHHHH-HCCeEEEECCC
Confidence 46788999999999999999999888877655577799998761 557888876 67999999999
Q ss_pred cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788 87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~ 122 (126)
|+.. +++|+|++++.+. +.+..++.|.+++
T Consensus 302 f~~~-----~~~~iRis~~~~~-~~~~l~~al~~~~ 331 (332)
T PRK06425 302 YECL-----GEQYIRIAIRRRS-FNIKLVNALRNFL 331 (332)
T ss_pred CCCC-----CCCEEEEEeCCHH-HHHHHHHHHHHHh
Confidence 9642 4689999999843 4466666666544
No 69
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=99.42 E-value=1.7e-12 Score=93.01 Aligned_cols=101 Identities=14% Similarity=0.188 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 12 TISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 12 ~~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
-+|-.|+.+-+.....|++. .+.++.|+|+.|+|+++.+.- + ++.++.++| +..||.++||+.|
T Consensus 305 VIrPFY~~~~q~~~~~l~~~lp~~~~~iHkpEGAIFlWLWf~dLP--I---------tt~~LYq~L-Ka~Gvl~VPG~~F 372 (417)
T COG3977 305 VIRPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLWLWFKDLP--I---------TTEELYQRL-KARGVLMVPGHYF 372 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCccceeeecCCcceeehhhhccCC--C---------CHHHHHHHH-HhCeEEEeccccc
Confidence 46788999999999999875 377899999999999998752 2 578899985 7999999999999
Q ss_pred ccCc--ccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 88 YSDE--HKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 88 ~~~~--~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
+..- ++++.-.++|+++..+++.|+.|+.+|.+.+.|
T Consensus 373 FpGl~~ewpH~hqC~Rmn~~~~~~~ie~Gva~lae~ve~ 411 (417)
T COG3977 373 FPGLDKEWPHTHQCMRMNYVPEPEKIEKGVAILAEEVER 411 (417)
T ss_pred CCCCCCCCCCccceEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 9742 233345799999999999999999999987764
No 70
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=99.41 E-value=5e-12 Score=93.52 Aligned_cols=93 Identities=17% Similarity=0.256 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 7 KCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
..|.+.+++.|+++|+.+.+.|+++ |+.+. |.||+|+|++++. ++.+++..++.++||.|.||+
T Consensus 262 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~~~fl~~~~~~--------------~~~~l~~~ll~~~gv~v~pg~ 326 (360)
T PRK07392 262 RDFQQQTWAWLPPAREALFQGLASLPGLTPL-PSAANFLLVQSQG--------------SALQLQEKLLQQHRILIRDCL 326 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCCEEEEEcCC--------------CHHHHHHHHHhhCCEEEEeCC
Confidence 4688889999999999999999887 67664 5889999998863 266788887778899999999
Q ss_pred CcccCcccCCCCCeEEEEeeCC--hhHHHHHHHHHH
Q psy788 86 AFYSDEHKHLGENLIRYCFFKK--DETLREASSILQ 119 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~~~--~e~i~~~~~~l~ 119 (126)
.|+.. +++|+||+|+.+ .+.+.++++++.
T Consensus 327 ~f~~~-----~~~~iRi~~~~~~~~~~l~~al~~~~ 357 (360)
T PRK07392 327 SFPEL-----GDRYFRVAVRTEAENQRLLEALAAIL 357 (360)
T ss_pred CCCCC-----CCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence 99642 468999999983 467888887764
No 71
>PRK07908 hypothetical protein; Provisional
Probab=99.40 E-value=7.7e-12 Score=92.12 Aligned_cols=92 Identities=13% Similarity=0.085 Sum_probs=72.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
...|++++++.|+++|+.+.+.|.++++++..|.||+|+|++++. +.++...| .++||.+.||+
T Consensus 251 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~~~~~~~~~---------------~~~~~~~l-~~~gI~v~~g~ 314 (349)
T PRK07908 251 AVAEAAADAARLAADRAEMVAGLRAVGARVVDPAAAPFVLVRVPD---------------AELLRKRL-RERGIAVRRGD 314 (349)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCcEeccCCCceEEEEECCc---------------HHHHHHHH-HhCCEEEEECC
Confidence 346899999999999999999998888888889999999998873 33566654 68899999999
Q ss_pred CcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHH
Q psy788 86 AFYSDEHKHLGENLIRYCFFK--KDETLREASSIL 118 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l 118 (126)
.|+.. .++++|+||+. +.+.+.++++++
T Consensus 315 ~f~~~-----~~~~vRis~~~~~~~~~l~~al~~~ 344 (349)
T PRK07908 315 TFPGL-----DPDYLRLAVRPRAEVPVLVQALAEI 344 (349)
T ss_pred CCCCC-----CCCeEEEEeCCCccHHHHHHHHHHH
Confidence 99532 36899999986 334444554444
No 72
>PRK08637 hypothetical protein; Provisional
Probab=99.40 E-value=4.2e-12 Score=94.86 Aligned_cols=93 Identities=14% Similarity=0.125 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788 8 CYFYTISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP 83 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p 83 (126)
.|+++++..|++|++.+.+.|+++ ++.+.+|+||||+|++++. . ++.+|+..|++++||.+.+
T Consensus 289 ~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~----~---------~~~~l~~~l~~~~gv~~~~ 355 (388)
T PRK08637 289 KEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKG----V---------DAEELRVHLLEKYGIGTIA 355 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCCh----H---------HHHHHHHHHhhhcceEEEe
Confidence 466778888999999999999765 4778899999999999973 1 3678989877778998874
Q ss_pred CCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788 84 PSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRNK 124 (126)
Q Consensus 84 g~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~~ 124 (126)
+ +.+++|++|+. +.+.+++++++|.+++++
T Consensus 356 ---~--------~~~~iRi~~~~~~~~~i~~~~~~l~~~~~~ 386 (388)
T PRK08637 356 ---L--------NETDLRIAFSCVEEEDIPELFDSIYKAIKD 386 (388)
T ss_pred ---c--------cCCceEEEeecCCHHHHHHHHHHHHHHHHh
Confidence 1 24689999997 889999999999998864
No 73
>PRK06290 aspartate aminotransferase; Provisional
Probab=99.38 E-value=9.1e-12 Score=93.90 Aligned_cols=103 Identities=12% Similarity=0.183 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
..|++++++.|+++++.+.+.|+++|+.+.+|+||||+|++++.... ...+..++.++++.|+.+.+|.++||+.
T Consensus 299 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~g~f~l~v~lp~~~~-----~~~~~~~~~~~~~~Ll~~~~v~~~p~~~ 373 (410)
T PRK06290 299 PEITEKIREKYSRRLDKLVKILNEVGFKAEMPGGTFYLYVKAPKGTK-----SGIKFENAEEFSQYLIKEKLISTVPWDD 373 (410)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCeecCCCeeeEEEEECCCccc-----cCCCCCCHHHHHHHHHHhCCEEEECCcc
Confidence 36899999999999999999999888888899999999999985310 0000014678999988777888999876
Q ss_pred cccCcccCCCCCeEEEEeeC---ChhHHHHHHHHHHHhhh
Q psy788 87 FYSDEHKHLGENLIRYCFFK---KDETLREASSILQTWRN 123 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~---~~e~i~~~~~~l~~~~~ 123 (126)
|+ +|+|++++. ++++.++-++.|.+.+.
T Consensus 374 ~~---------~~lRi~~~~~~~~~~~~~~~~~~l~~~~~ 404 (410)
T PRK06290 374 AG---------HFLRFSVTFEAKDEEEEDRILEEIKRRLS 404 (410)
T ss_pred cc---------CeEEEEEEcccccccchhHHHHHHHHHHh
Confidence 52 589999993 44555566666655543
No 74
>PRK06225 aspartate aminotransferase; Provisional
Probab=99.38 E-value=1.4e-11 Score=91.66 Aligned_cols=104 Identities=15% Similarity=0.221 Sum_probs=82.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcc-cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788 4 APDKCYFYTISEELRPKREILADALDKA-GMVP-VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQG 81 (126)
Q Consensus 4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v 81 (126)
...+.|++++++.++++++.+.+.|+++ ++.+ ..|.+|.|+|++++... . ++.+++..|. ++||.+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~--~---------~~~~l~~~l~-~~gi~v 337 (380)
T PRK06225 270 KVKDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEAG--I---------DPEDLVEYLL-ERKIFV 337 (380)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEccccc--C---------CHHHHHHHHH-HCCEEE
Confidence 3456789999999999999999999886 5433 35677889999987421 1 3678888875 889999
Q ss_pred eCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788 82 IPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN 123 (126)
Q Consensus 82 ~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~ 123 (126)
.||+.|+.. .+++++|++|+.+++++++++++|.+++.
T Consensus 338 ~~g~~~~~~----~~~~~iR~s~~~~~e~l~~~~~~l~~~~~ 375 (380)
T PRK06225 338 RQGTYTSKR----FGDRYIRVSFSIPREQVEVFCEEFPDVVE 375 (380)
T ss_pred cCCcccCcC----CCCceEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 999877543 24689999999988999999999998875
No 75
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=99.34 E-value=2.4e-11 Score=89.76 Aligned_cols=90 Identities=19% Similarity=0.121 Sum_probs=74.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
.+.|++++++.|+++|+.+.+.|.... .|.+|+|+|++++ ++.+|++.| .++||.|.||+
T Consensus 267 ~~~~~~~~~~~~~~~r~~l~~~L~~~~----~~~~g~f~~~~~~---------------~~~~~~~~l-~~~gv~v~~g~ 326 (357)
T PRK14809 267 DDEHVERTVETARWAREYIREELDAPT----WESAGNFVLAEVG---------------DASAVAEAA-QERGVIVRDCT 326 (357)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcc----CCCCCCEEEEECC---------------CHHHHHHHH-HHCCEEEEECc
Confidence 367999999999999999999996532 2678999999874 255788875 58899999999
Q ss_pred CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788 86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN 123 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~ 123 (126)
.|+. ++++|++|+. .+++++++++|.++++
T Consensus 327 ~f~~-------~~~iRls~~~-~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 327 SFGL-------PECIRITCGT-REETERAVEVLNEVLA 356 (357)
T ss_pred cCCC-------CCeEEEecCC-HHHHHHHHHHHHHHhc
Confidence 9963 4799999986 6789999999998764
No 76
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=99.33 E-value=1.9e-11 Score=93.49 Aligned_cols=100 Identities=16% Similarity=0.293 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCC---
Q psy788 20 KREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLG--- 96 (126)
Q Consensus 20 r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~--- 96 (126)
+++++.+.|.+.|+++..|.||+|+++++......++ ... .++.+|+.+|+.+.||.++|++.|+...++..+
T Consensus 324 ~~~~l~~~L~~~G~~~~~p~Gg~~v~~d~~~~~~~~~---~~~-~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~ 399 (460)
T PRK13238 324 QVEYLGEGLEEAGVPIQTPAGGHAVFVDAGKFLPHIP---AEQ-FPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQL 399 (460)
T ss_pred HHHHHHHHHHHCCCCeEccCCceEEEEEchhcCCCCC---CCC-CchHHHHHHHHHHcCeeeecccceecccCCCCcccc
Confidence 5799999998889999999999999999975311010 001 136789999999999999999999875422222
Q ss_pred ---CCeEEEEeeC---ChhHHHHHHHHHHHhhh
Q psy788 97 ---ENLIRYCFFK---KDETLREASSILQTWRN 123 (126)
Q Consensus 97 ---~~~~Rl~~~~---~~e~i~~~~~~l~~~~~ 123 (126)
..++||++++ +.+.++...++|..+.+
T Consensus 400 ~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~ 432 (460)
T PRK13238 400 PAPAELLRLAIPRRVYTQSHMDYVAEALKAVKE 432 (460)
T ss_pred CCccceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence 5899999998 99999999999988764
No 77
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=99.32 E-value=3.2e-11 Score=89.61 Aligned_cols=90 Identities=16% Similarity=0.036 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
+.|+++.++.|+++|+.+.+.|+++|+++ .|.+|+|+|++++. ++.++++.|+ ++||.+.||+.
T Consensus 278 ~~~~~~~~~~~~~~r~~l~~~L~~~g~~~-~p~~g~fl~~~~~~--------------~~~~l~~~l~-~~gi~v~p~~~ 341 (371)
T PRK05166 278 EEHLAKGVALALAERERLKKELAEMGYRI-APSRANFLFFDARR--------------PASAVAEALL-RQGVIVKPWKQ 341 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcCee-CCCcCCEEEEeCCC--------------CHHHHHHHHH-HCCeEEecCCC
Confidence 46999999999999999999999888765 56678899998753 3667888876 67999999975
Q ss_pred cccCcccCCCCCeEEEEeeCC--hhHHHHHHHHHH
Q psy788 87 FYSDEHKHLGENLIRYCFFKK--DETLREASSILQ 119 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~~--~e~i~~~~~~l~ 119 (126)
++ .++|+|++|+.+ .+.+.++++++.
T Consensus 342 ~~-------~~~~iRi~~~~~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 342 PG-------FETFIRVSIGSPEENDHFVAALDKVL 369 (371)
T ss_pred CC-------CCCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 43 368999999983 466777777664
No 78
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=99.30 E-value=6.1e-11 Score=87.67 Aligned_cols=91 Identities=11% Similarity=0.030 Sum_probs=70.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 6 DKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
++.|++++++.|+++|+.+.+.|+++ ++.+.+| +|+|+|++++. ++.+++..|+ ++||.|.||
T Consensus 258 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~~~~~l~-~~gI~v~~~ 321 (356)
T PRK08056 258 DRAYQQATWQWLAEEGARFYQALCALPLLTVWPG-RANYLFLRCER--------------PDIDLQRALL-TQRILIRSC 321 (356)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCC-CCcEEEEEcCC--------------ChHHHHHHHH-HCCeEEEEC
Confidence 45789999999999999999999887 6766555 67899999873 2557888876 789999999
Q ss_pred CCcccCcccCCCCCeEEEEeeCCh--hHHHHHHHH
Q psy788 85 SAFYSDEHKHLGENLIRYCFFKKD--ETLREASSI 117 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~~~~--e~i~~~~~~ 117 (126)
+.|... ..+|+|++++.++ +.+.+++++
T Consensus 322 ~~f~~~-----~~~~iRis~~~~~~~~~l~~~l~~ 351 (356)
T PRK08056 322 ANYPGL-----DSRYYRVAIRSAAENERLLAALRN 351 (356)
T ss_pred CCCCCC-----CCCEEEEEEcCHHHHHHHHHHHHH
Confidence 999532 3579999999733 344444443
No 79
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=99.30 E-value=6.4e-11 Score=87.59 Aligned_cols=92 Identities=15% Similarity=0.216 Sum_probs=71.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 6 DKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
++.|+.++++.|+++|+.+.+.|+++ ++++..|+|+ |+|++++. ..+|++.|+ ++||.|.||
T Consensus 259 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~-f~~~~~~~---------------~~~~~~~l~-~~gI~v~~~ 321 (354)
T PRK06358 259 DKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVN-FIFFKLEK---------------PIDLRKELL-KKGILIRSC 321 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCcce-EEEEEcCc---------------hHHHHHHHH-HCCeEEEEC
Confidence 35688999999999999999999887 7788888776 89998863 457888876 689999999
Q ss_pred CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788 85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQT 120 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~ 120 (126)
+.|+.. +++|+|++++.+.+. +.-++.|.+
T Consensus 322 ~~f~~~-----~~~~iRls~~~~~~~-~~l~~~l~~ 351 (354)
T PRK06358 322 SNYRGL-----DENYYRVAVKSREDN-KKLLKALEV 351 (354)
T ss_pred CCCCCC-----CCCEEEEEeCCHHHH-HHHHHHHHH
Confidence 999532 468999999984332 444444444
No 80
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=99.29 E-value=3e-11 Score=90.45 Aligned_cols=83 Identities=13% Similarity=0.251 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788 7 KCYFYTISEELRPKREILADALDKAG----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI 82 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~ 82 (126)
+.|++++|+.|++||+.+.+.|++++ +++..|+||||+|++++. +++..++.++||.+.
T Consensus 308 ~~~~~~~r~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~~-----------------~~~~~l~~~~~V~~~ 370 (396)
T PRK09257 308 EAELEEMRERIKAMRQLLVEALKAKGPSRDFDFIARQRGMFSYSGLTP-----------------EQVDRLREEFGVYAV 370 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccceEEEecCCCH-----------------HHHHHHHHcCCEEEc
Confidence 57889999999999999999999873 677899999999998741 244567789999987
Q ss_pred CCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHh
Q psy788 83 PPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTW 121 (126)
Q Consensus 83 pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~ 121 (126)
| . + ||+|+. +++.+++++++|.++
T Consensus 371 p------~-----~----ri~~~~~~~~~i~~~~~~i~~~ 395 (396)
T PRK09257 371 G------S-----G----RINVAGLNESNIDYVAEAIAAV 395 (396)
T ss_pred C------C-----C----eEEEeeCCHHHHHHHHHHHHhh
Confidence 7 1 2 999985 999999999999875
No 81
>PLN02397 aspartate transaminase
Probab=99.28 E-value=4.1e-11 Score=90.66 Aligned_cols=83 Identities=14% Similarity=0.187 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 9 YFYTISEELRPKREILADALDKAG----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 9 ~l~~~r~~~~~r~~~l~~~l~~~g----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
+++.+++.|+++|+.+.+.|++++ +.+..|+||||+|++++ + +|++.|++++||.+++
T Consensus 333 ~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~fl~~~l~----------------~-~~~~~Ll~~~~V~v~~- 394 (423)
T PLN02397 333 ELKGMADRIISMRQKLYDALEARGSPGDWSHITKQIGMFSFTGLN----------------K-EQVDRMTKEYHIYMTR- 394 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCceEEEecCCC----------------H-HHHHHHHHhCCEEECC-
Confidence 478999999999999999999876 77788999999999774 2 3888999999999962
Q ss_pred CCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788 85 SAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN 123 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~ 123 (126)
.+ |++|+. +.+.+++++++|.+++.
T Consensus 395 ------------~~--Ri~~~~~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 395 ------------DG--RISMAGLSSKNVPYLADAIHAVVT 420 (423)
T ss_pred ------------CC--eEEEeeCCHHHHHHHHHHHHHHHh
Confidence 12 999985 99999999999998875
No 82
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=99.26 E-value=1.6e-10 Score=85.39 Aligned_cols=92 Identities=12% Similarity=0.050 Sum_probs=72.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
...|++.+++.++++++.+.+.|++.|+.+. |.+|+|+|++++. ++.++++.|+ ++||.+.||+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~g~~i~~~~~~--------------~~~~~~~~l~-~~gv~v~~g~ 330 (359)
T PRK03158 267 DQAFLKECVEKNAEGLEQYYAFCKEYGLFYY-PSQTNFIFVDTGR--------------DANELFEALL-KKGYIVRSGA 330 (359)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCeeC-CCcCcEEEEECCC--------------CHHHHHHHHH-HCCeEEeeCC
Confidence 3578999999999999999999988777765 5567899998852 3667888875 7899999999
Q ss_pred CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHh
Q psy788 86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW 121 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~ 121 (126)
.|+. ++++||+|+. +++++..++.|.++
T Consensus 331 ~f~~-------~~~iRi~~~~-~~~~~~l~~al~~~ 358 (359)
T PRK03158 331 ALGF-------PTGVRITIGL-KEQNDKIIELLKEL 358 (359)
T ss_pred CCCC-------CCeEEEecCC-HHHHHHHHHHHHHh
Confidence 9952 4799999996 44456666666654
No 83
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=99.23 E-value=2.3e-10 Score=83.90 Aligned_cols=88 Identities=11% Similarity=0.141 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 7 KCYFYTISEELRPKREILADALDKAG-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
..|.+.+++.|+++++.+.+.|++++ +++ .|.+|+|+|++++. ..+|+++|. ++||.+.||+
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~f~~~~~~~---------------~~~l~~~l~-~~gi~v~pg~ 302 (330)
T TIGR01140 240 TAWQAATRARLAAERARLAALLARLGGLEV-VGGTALFLLVRTPD---------------AAALHEALA-RRGILIRDFD 302 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCceE-CCCCCeEEEEEcCC---------------HHHHHHHHH-HCCEEEEECC
Confidence 46888999999999999999999885 555 45689999998763 457888875 6899999999
Q ss_pred CcccCcccCCCCCeEEEEeeCChhHHHHHHHH
Q psy788 86 AFYSDEHKHLGENLIRYCFFKKDETLREASSI 117 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~ 117 (126)
.|... +.+++|++++++.+. +..++.
T Consensus 303 ~f~~~-----~~~~iRi~~~~~~~~-~~~~~~ 328 (330)
T TIGR01140 303 NFPGL-----DPRYLRFALPTDEEN-DRLEEA 328 (330)
T ss_pred CCCCC-----CCCEEEEEecCHHHH-HHHHHh
Confidence 99532 467999999985443 444443
No 84
>PTZ00376 aspartate aminotransferase; Provisional
Probab=99.21 E-value=1.5e-10 Score=87.06 Aligned_cols=84 Identities=13% Similarity=0.165 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788 8 CYFYTISEELRPKREILADALDKAG----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP 83 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~g----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p 83 (126)
.+++++++.|+++|+.+.+.|++++ +.+..|+||||+|++++ .+++.+|++++||.++|
T Consensus 314 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~-----------------~~~~~~L~~~~~v~v~p 376 (404)
T PTZ00376 314 SELKEMSGRIQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGLT-----------------KEQVERLIEKYHIYLLD 376 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCceEEEecCCC-----------------HHHHHHHHHhCCEeecC
Confidence 3467888999999999999999874 45668999999999764 25778888788999988
Q ss_pred CCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788 84 PSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN 123 (126)
Q Consensus 84 g~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~ 123 (126)
| + |++|+. +.+.++.++++|.+++.
T Consensus 377 ~-------------~--Ris~~~~~~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 377 N-------------G--RISVAGLTSKNVDYVAEAIHDVVR 402 (404)
T ss_pred C-------------C--eEEEeccCHHhHHHHHHHHHHHHh
Confidence 6 1 999984 88999999999998764
No 85
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=99.20 E-value=5.7e-10 Score=82.59 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
..|++++++.++++++.+.+.|++.|+.+. |.+|+|+|++++.. . ++.++++.|. ++||.+.|+..
T Consensus 271 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~g~~~~i~~~~~---~---------~~~~~~~~L~-~~gI~v~~~~~ 336 (367)
T PRK02731 271 DAFVEKSRALNAEGMAWLTEFLAELGLEYI-PSVGNFILVDFDDG---K---------DAAEAYQALL-KRGVIVRPVAG 336 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCccC-CCCceEEEEECCCC---C---------CHHHHHHHHH-HCCEEEEeCCC
Confidence 578999999999999999999998887776 55678999999642 1 4678888865 78999999988
Q ss_pred cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788 87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN 123 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~ 123 (126)
|+. ++++|++++. .++++..++.|.++++
T Consensus 337 ~~~-------~~~iRis~~~-~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 337 YGL-------PNALRITIGT-EEENRRFLAALKEFLA 365 (367)
T ss_pred CCC-------CCeEEEecCC-HHHHHHHHHHHHHHHh
Confidence 852 5799999986 4556777777776653
No 86
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=99.18 E-value=5.1e-10 Score=83.61 Aligned_cols=91 Identities=18% Similarity=0.142 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
..|++++++.|+++|+.+.+.|++++.....|.+|+|+|++++.. . ++.++++.|+ ++||.|.|++.
T Consensus 286 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~~~f~~~~~~~~---~---------~~~~~~~~l~-~~gI~v~~~~~ 352 (380)
T PLN03026 286 PKYLEDVKNALVEERERLFGLLKEVPFLEPYPSDANFILCRVTSG---R---------DAKKLKEDLA-KMGVMVRHYNS 352 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCeECCCCCeEEEEECCCC---C---------CHHHHHHHHH-HCCeEEEECCC
Confidence 479999999999999999999998753223788999999998742 1 3668888876 88999999865
Q ss_pred cccCcccCCCCCeEEEEeeCCh--hHHHHHHHH
Q psy788 87 FYSDEHKHLGENLIRYCFFKKD--ETLREASSI 117 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~~~--e~i~~~~~~ 117 (126)
++ .++++||+|+.++ +.+.+++++
T Consensus 353 ~~-------~~~~lRis~~~~~~~~~l~~al~~ 378 (380)
T PLN03026 353 KE-------LKGYIRVSVGKPEHTDALMEALKQ 378 (380)
T ss_pred CC-------CCCEEEEecCCHHHHHHHHHHHHH
Confidence 32 4679999999733 455555554
No 87
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=99.16 E-value=1.1e-09 Score=80.69 Aligned_cols=95 Identities=18% Similarity=0.254 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
..|++++++.++++++.+.+.|+++|+++ .|.+|+|+|++++.. ++.++++.| .++||.|.+
T Consensus 259 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~~~~~~~~-------------~~~~~~~~l-~~~gi~v~~--- 320 (353)
T PRK05387 259 EAYFEETRAKVIATRERLVEELEALGFEV-LPSKANFVFARHPSH-------------DAAELAAKL-RERGIIVRH--- 320 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCeE-CCCcCcEEEEECCCC-------------CHHHHHHHH-HHCCEEEEE---
Confidence 46889999999999999999999888775 466788999998742 367888886 588999975
Q ss_pred cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
|+.. ..++++|++|+. .++++.+++.|.+++.|
T Consensus 321 ~~~~----~~~~~iRis~~~-~~~~~~~~~~L~~~~~~ 353 (353)
T PRK05387 321 FNKP----RIDQFLRITIGT-DEEMEALVDALKEILAK 353 (353)
T ss_pred CCCC----CCCCeEEEEeCC-HHHHHHHHHHHHHHhhC
Confidence 3322 136899999985 57789999999887654
No 88
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=99.15 E-value=8.5e-10 Score=81.45 Aligned_cols=91 Identities=18% Similarity=0.108 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 7 KCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
..++++.++.++++|+.+.+.|+++ |+.+ .|.+|+|+|++++. +.+++..| .++||.|.||+
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~---------------~~~~~~~l-~~~gI~v~~~~ 325 (356)
T PRK04870 263 VDVLDAQAAQLRAERTRLAAALAALPGVTV-FPSAANFILVRVPD---------------AAAVFDGL-KTRGVLVKNLS 325 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcEE-CCCCCeEEEEECCC---------------HHHHHHHH-HHCCEEEEECC
Confidence 3578899999999999999999887 7766 46677799998862 44677765 68999999999
Q ss_pred CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788 86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQT 120 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~ 120 (126)
.|+.. .++++|++|+++ ++.+..++.|.+
T Consensus 326 ~f~~~-----~~~~iRis~~~~-~~~~~l~~al~~ 354 (356)
T PRK04870 326 GMHPL-----LANCLRVTVGTP-EENAQFLAALKA 354 (356)
T ss_pred CCCCC-----CCCeEEEeCCCH-HHHHHHHHHHHH
Confidence 99642 468999999973 333455554443
No 89
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=99.15 E-value=8e-10 Score=82.29 Aligned_cols=95 Identities=16% Similarity=0.060 Sum_probs=72.9
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCee
Q psy788 2 TTAPDKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQ 80 (126)
Q Consensus 2 ~~~~~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~ 80 (126)
++.+.+.|++.+++.+++ |+.+.+.|+++ ++.+ .|+||+|+|++++.. . ++.+++..| .++||.
T Consensus 276 ~l~~~~~~~~~~~~~~~~-r~~l~~~L~~~~~~~~-~p~~g~f~~~~l~~~---~---------~~~~~~~~l-~~~gi~ 340 (374)
T PRK02610 276 ALEHRQELLAAIPEILQE-RDRLYQALQELPQLRV-WPSAANFLYLRLSQD---A---------ALAALHQAL-KAQGTL 340 (374)
T ss_pred HhcCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcEe-CCCcceEEEEeCCCC---C---------CHHHHHHHH-HHCCEE
Confidence 355667788888888776 67788999876 6664 589999999999753 1 366788875 588999
Q ss_pred EeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 81 GIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 81 v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
|.++ ++++||+|+.+ +++++++++|.+++++
T Consensus 341 v~~~------------~~~lRls~~~~-~~~~~~l~~l~~~l~~ 371 (374)
T PRK02610 341 VRHT------------GGGLRITIGTP-EENQRTLERLQAALTQ 371 (374)
T ss_pred EEeC------------CCeEEEeCCCH-HHHHHHHHHHHHHHhh
Confidence 8641 36899999974 4579999999988753
No 90
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=99.14 E-value=9e-10 Score=81.31 Aligned_cols=92 Identities=21% Similarity=0.152 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
.+|++++++.++++|+.+.+.|. +.+ .|.+|+|+|++++.. ++.++++.|. ++||.+.||..
T Consensus 269 ~~~~~~~~~~~~~~r~~l~~~l~---~~~-~~~~~~~i~~~~~~~-------------~~~~~~~~l~-~~gv~v~~~~~ 330 (361)
T PRK00950 269 KEYIEKSIEHGIKSREYLYNELP---FKV-YPSEANFVLVDVTPM-------------TAKEFCEELL-KRGVIVRDCTS 330 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC---eeE-CCCcceEEEEECCCC-------------CHHHHHHHHH-HCCEEEeeCCc
Confidence 46899999999999999888875 444 467889999999531 3678999875 77999999998
Q ss_pred cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788 87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~ 122 (126)
|+.. +++++|++|+. .++++..++.|.+++
T Consensus 331 f~~~-----~~~~lRis~~~-~~~~~~l~~~L~~il 360 (361)
T PRK00950 331 FRGL-----GDYYIRVSIGT-FEENERFLEILKEIV 360 (361)
T ss_pred cCCC-----CCCeEEEECCC-HHHHHHHHHHHHHHh
Confidence 8632 46899999995 456788888877654
No 91
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=99.13 E-value=1.2e-09 Score=81.19 Aligned_cols=90 Identities=18% Similarity=0.137 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 8 CYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
.++.+.++.++++|+.+.+.|+++ ++....|.+|+|+|++++. ..++.+.+ .++||.|.||+.
T Consensus 269 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~---------------~~~~~~~l-~~~gI~v~~~~~ 332 (364)
T PRK04781 269 AVTARRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLLVRFDD---------------AEAAFQAL-LAAGVVVRDQRA 332 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcCC---------------HHHHHHHH-HHCCeEEeeCCC
Confidence 456666668899999999999887 6654568889999999862 44667775 589999999987
Q ss_pred cccCcccCCCCCeEEEEeeCCh--hHHHHHHHHHH
Q psy788 87 FYSDEHKHLGENLIRYCFFKKD--ETLREASSILQ 119 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~~~--e~i~~~~~~l~ 119 (126)
|.. .++|+|++|+.+. +.+.++++.+.
T Consensus 333 ~~~------~~~~~Ris~~~~~~~~~l~~al~~~~ 361 (364)
T PRK04781 333 APR------LSDALRITLGTPEQNDRVLAALQRTQ 361 (364)
T ss_pred CCC------CCCeEEEeCCCHHHHHHHHHHHHHHH
Confidence 742 3679999999833 34555555443
No 92
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.09 E-value=2.1e-09 Score=79.53 Aligned_cols=91 Identities=13% Similarity=0.150 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788 10 FYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS 89 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~ 89 (126)
.+.+++.+++|++++.+.+++ +.+.++.+| |+|++++.. ++.+++..++.++||.+.||+.|..
T Consensus 252 ~~~~~~~l~~r~~~~~~~l~~--~~~~~~~~~-f~~~~~~~~-------------~~~~~~~~ll~~~gV~v~~~~~f~~ 315 (346)
T TIGR03576 252 LSRIRDAFKRKEEVYLRLFDK--LNVERTPTG-FVIKGVEEE-------------KLIEIGLDLLRNYGIITITAVGMPG 315 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--CCCCcCCCe-EEEEeCCCC-------------CHHHHHHHHHHhCCEEEeCCcccCC
Confidence 367789999999999888874 455555666 899998741 2456777788899999999998832
Q ss_pred CcccCCCCCeEEEEeeCChh---HHHHHHHHHHHhh
Q psy788 90 DEHKHLGENLIRYCFFKKDE---TLREASSILQTWR 122 (126)
Q Consensus 90 ~~~~~~~~~~~Rl~~~~~~e---~i~~~~~~l~~~~ 122 (126)
.++|+|++++.+++ +++..++.|.+.+
T Consensus 316 ------~~~~vRis~~~~~~~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 316 ------ASKTLRFDLAAKDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred ------CCCeEEEEEecChHHhcCHHHHHHHHHhcc
Confidence 36899999998664 5677777776654
No 93
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=99.08 E-value=2.3e-09 Score=79.33 Aligned_cols=102 Identities=22% Similarity=0.256 Sum_probs=70.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhC-C-----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCe
Q psy788 6 DKCYFYTISEELRPKREILADALDKA-G-----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKL 79 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g-----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV 79 (126)
...|.++-++.++-+.+.+.+.|++. + .+++.|.||||++++.... ....+.+ |.+++||
T Consensus 305 v~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G-------------~AkrvV~-lakeAGV 370 (425)
T PF12897_consen 305 VRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDG-------------TAKRVVE-LAKEAGV 370 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT--------------HHHHHH-HHHHTTE
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCC-------------hHHHHHH-HHHHhCc
Confidence 35789999999999999999999864 3 5789999999999999863 3555555 5789999
Q ss_pred eEeC-CCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788 80 QGIP-PSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN 123 (126)
Q Consensus 80 ~v~p-g~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~ 123 (126)
.+.| |+.|--..+ +....|||+-+. +.++++.|++.+...++
T Consensus 371 ~LT~AGAtfPyg~D--P~D~nIRiAPS~P~leel~~Am~~~~~cv~ 414 (425)
T PF12897_consen 371 ALTPAGATFPYGKD--PRDSNIRIAPSYPSLEELETAMDVFATCVK 414 (425)
T ss_dssp E---TTTTSGGG----TTS-EEEE--SSS-HHHHHHHHHHHHHHHH
T ss_pred eeCCCCCCCCCCCC--CCCCcEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 9999 777753221 346889999997 88999999998876544
No 94
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.06 E-value=2.6e-09 Score=78.41 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 8 CYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
.|+.++++.++++++.+.+.|+++ |+++ .|.+|+|+|++++. ++.+++..|. ++||.+.||+.
T Consensus 257 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~g~~~~~~~~~--------------~~~~~~~~L~-~~gI~v~~g~~ 320 (346)
T TIGR01141 257 DFIEKTVEEINAERERLYDGLKKLPGLEV-YPSDANFVLIRFPR--------------DADALFEALL-EKGIIVRDLNS 320 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEE-CCCcCCEEEEecCC--------------CHHHHHHHHH-HCCeEEEeCCC
Confidence 388999999999999999999988 7775 45578899999874 2567888865 78999999998
Q ss_pred cccCcccCCCCCeEEEEeeCChhHHHHHHHHH
Q psy788 87 FYSDEHKHLGENLIRYCFFKKDETLREASSIL 118 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l 118 (126)
|+. ..+++|+++++ +++++..++.|
T Consensus 321 f~~------~~~~iRls~~~-~~~i~~~~~~l 345 (346)
T TIGR01141 321 YPG------LPNCLRITVGT-REENDRFLAAL 345 (346)
T ss_pred cCC------CCCeEEEecCC-HHHHHHHHHHh
Confidence 853 26899999984 56677777655
No 95
>KOG0258|consensus
Probab=99.06 E-value=1.1e-09 Score=81.04 Aligned_cols=105 Identities=15% Similarity=0.195 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788 11 YTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS 89 (126)
Q Consensus 11 ~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~ 89 (126)
+.+-..+++|...+.+.+++. |++|.+|+|+||++..+.-+.+.+..+--.....|.-++..|+...||+++|||.||+
T Consensus 362 d~il~~l~~ra~l~~~~~ns~~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ 441 (475)
T KOG0258|consen 362 DGILSSLRSRAKLTEDAFNSLEGISCNPVQGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQ 441 (475)
T ss_pred HhHHHHHHHHhHHHHHHHhhcCceeeccCccceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCC
Confidence 455667788888999999988 8999999999999988764322111000011224666788999999999999999998
Q ss_pred CcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788 90 DEHKHLGENLIRYCFFKKDETLREASSILQTWR 122 (126)
Q Consensus 90 ~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~ 122 (126)
.+ ++-+||.+|-.+. + +-++++.++-
T Consensus 442 ~~----GtyH~R~TiLp~~--~-~~i~~~~~fH 467 (475)
T KOG0258|consen 442 KE----GTYHFRTTILPPG--L-EIIEKFKKFH 467 (475)
T ss_pred CC----ceeEEEEeecCch--h-HHHHHHHHHH
Confidence 63 7889999998744 3 5566665543
No 96
>PRK09105 putative aminotransferase; Provisional
Probab=99.03 E-value=7e-09 Score=77.27 Aligned_cols=91 Identities=15% Similarity=0.017 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
+.|++.+++.|+++|+.+.+.|+++|+++.+|+|+|| |++++. ++.++++.|+ ++||.+ |+.
T Consensus 278 ~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~f~-~~~~~~--------------~~~~l~~~L~-~~gI~v--~~~ 339 (370)
T PRK09105 278 PKLVPQRRAENAAVREDTIAWLKKKGYKCTPSQANCF-MVDVKR--------------PAKAVADAMA-KQGVFI--GRS 339 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCcEE-EEeCCC--------------CHHHHHHHHH-HCCcEE--ecC
Confidence 5799999999999999999999988888888999977 577652 3668889876 669998 455
Q ss_pred cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788 87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~ 122 (126)
|.. .++|+|++++. +++++..++.|.+++
T Consensus 340 ~~~------~~~~~Ris~~~-~~~~~~l~~al~~~~ 368 (370)
T PRK09105 340 WPI------WPNWVRVTVGS-EEEMAAFRSAFAKVM 368 (370)
T ss_pred CCC------CCCeEEEEcCC-HHHHHHHHHHHHHHh
Confidence 632 36899999997 344556666665543
No 97
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=98.96 E-value=2.1e-08 Score=74.59 Aligned_cols=96 Identities=18% Similarity=0.170 Sum_probs=72.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe-CC
Q psy788 6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI-PP 84 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~-pg 84 (126)
+..|++++++.++++|+.+.+.|++.|+.+ .|.+|+|+|++++... . ...++.+.|. ++||.+. ||
T Consensus 268 ~~~~~~~~~~~~~~~r~~~~~~L~~~g~~~-~p~~~~f~~~~~~~~~---~--------~a~~l~~~l~-~~Gi~v~~p~ 334 (369)
T PRK08153 268 DQAYLAEVVGKIAAARDRIAAIARANGLTP-LPSATNFVAIDCGRDG---A--------FARAVLDGLI-ARDIFVRMPG 334 (369)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCcc-CCCcCcEEEEECCCCc---c--------cHHHHHHHHH-HCCeEEeeCC
Confidence 357899999999999999999998777764 4789999999986321 1 2567888865 7899994 66
Q ss_pred CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788 85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN 123 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~ 123 (126)
... +++++|++++. +++++..++.|.+++.
T Consensus 335 ~~~--------~~~~iRis~~~-~~~~~~~~~al~~~~~ 364 (369)
T PRK08153 335 VAP--------LDRCIRVSCGP-DEELDLFAEALPEALE 364 (369)
T ss_pred CCC--------CCCeEEEecCC-HHHHHHHHHHHHHHHH
Confidence 421 35799999995 5566777777766654
No 98
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=98.95 E-value=1.5e-08 Score=74.86 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 8 CYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
.++.+.++.++++|+.+.+.|.+. |+.+. |.+|+|+|++++. +.++++.|. ++||.|.|++.
T Consensus 259 ~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~-~~~~~~~~i~~~~---------------~~~~~~~l~-~~gV~v~~~~~ 321 (351)
T PRK14807 259 GVLKERVNYILNERERLIKELSKIPGIKVY-PSKTNFILVKFKD---------------ADYVYQGLL-ERGILVRDFSK 321 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-cCCccEEEEEcCC---------------HHHHHHHHH-HCCEEEEECCC
Confidence 467778888999999999999876 77765 5567799998862 456777764 78999988654
Q ss_pred cccCcccCCCCCeEEEEeeCCh--hHHHHHHH
Q psy788 87 FYSDEHKHLGENLIRYCFFKKD--ETLREASS 116 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~~~--e~i~~~~~ 116 (126)
+.. .++++|++|+.+. +.+.++++
T Consensus 322 ~~~------~~~~iRis~~~~~~~~~l~~~l~ 347 (351)
T PRK14807 322 VEG------LEGALRITVSSCEANDYLINGLK 347 (351)
T ss_pred CCC------CCCeEEEEcCCHHHHHHHHHHHH
Confidence 321 3679999999732 33444443
No 99
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=98.85 E-value=8.5e-08 Score=70.72 Aligned_cols=88 Identities=14% Similarity=0.108 Sum_probs=65.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
+..|.+.+++.|+++|+.+.+.|+++|+++. .+++|+|++++. ..++...|. ++||.|.+
T Consensus 243 ~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~--~~~~f~~~~~~~---------------~~~l~~~l~-~~GI~vr~-- 302 (339)
T PRK06959 243 DAAWQAAMRERLAADGARLAALLRAHGFAVH--ATPLFSWTDDPR---------------AAALHAALA-RRGIWTRY-- 302 (339)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHCCCCcc--CcceEEEEeCCC---------------HHHHHHHHH-hCCeEEEE--
Confidence 3578999999999999999999998877654 368999998752 456778764 78999974
Q ss_pred CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHh
Q psy788 86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW 121 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~ 121 (126)
|+ ..+++|++++.+.++++..++.|.++
T Consensus 303 -~~-------~~~~lRisi~~~~~e~~~l~~al~~~ 330 (339)
T PRK06959 303 -FA-------PPPSVRFGLPADEAEWQRLEDALAEC 330 (339)
T ss_pred -CC-------CCCeEEEECCCCHHHHHHHHHHHHHH
Confidence 42 24699999965444555555555443
No 100
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=98.85 E-value=7.4e-08 Score=71.74 Aligned_cols=96 Identities=16% Similarity=0.085 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788 11 YTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD 90 (126)
Q Consensus 11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~ 90 (126)
.++++.|+++++.+.+.|.+.++++..|.++++.+ .++.. . ++.+|++.|+ ++||.+.|+. |...
T Consensus 296 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~~~~~---~---------~~~~~~~~L~-~~gI~v~~~~-~~~~ 360 (397)
T PRK06939 296 DELRDRLWENARYFREGMTAAGFTLGPGEHPIIPV-MLGDA---K---------LAQEFADRLL-EEGVYVIGFS-FPVV 360 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCEEEE-EECCH---H---------HHHHHHHHHH-HCCceEeeeC-CCCC
Confidence 57889999999999999988887777778887644 34421 1 3668889876 5599999754 5322
Q ss_pred cccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788 91 EHKHLGENLIRYCFFK--KDETLREASSILQTWRNK 124 (126)
Q Consensus 91 ~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~ 124 (126)
. .+.+++|++++. +++++++++++|.+++++
T Consensus 361 ~---~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~ 393 (397)
T PRK06939 361 P---KGQARIRTQMSAAHTKEQLDRAIDAFEKVGKE 393 (397)
T ss_pred C---CCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 1 235789999863 889999999999988765
No 101
>PLN02822 serine palmitoyltransferase
Probab=98.84 E-value=9.2e-08 Score=73.72 Aligned_cols=106 Identities=13% Similarity=0.017 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC--CCc
Q psy788 11 YTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP--SAF 87 (126)
Q Consensus 11 ~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg--~~f 87 (126)
..+++.|+++++.+.+.|++. |+++..|.+++++++.++....... .+.....++++.|+.++||.+.|+ +.|
T Consensus 367 ~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~l~~~~~~~~----~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~ 442 (481)
T PLN02822 367 PSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLEKSTGSAK----EDLSLLEHIADRMLKEDSVLVVVSKRSTL 442 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEEEEeCCCccccc----chHHHHHHHHHHHHhcCCEEEEeeCCCCc
Confidence 568899999999999999987 8888888999999999974200000 000113579999877889999987 445
Q ss_pred ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788 88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK 124 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~ 124 (126)
... ..+.++|++++ .++++|++++++|.+++++
T Consensus 443 ~~~----~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~ 477 (481)
T PLN02822 443 DKC----RLPVGIRLFVSAGHTESDILKASESLKRVAAS 477 (481)
T ss_pred CCC----CCCCcEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 322 13568999877 4899999999999887764
No 102
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=98.84 E-value=8.2e-08 Score=71.01 Aligned_cols=89 Identities=15% Similarity=0.074 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 7 KCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
.+|+.+.++.++++|+.+.+.|+++ ++....|.+|.|+|++++. +.++.+.|+ ++||.|.++.
T Consensus 261 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~~---------------~~~l~~~L~-~~gi~vr~~~ 324 (351)
T PRK01688 261 IAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFTA---------------SSAVFKSLW-DQGIILRDQN 324 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcCC---------------HHHHHHHHH-HCCeEEEECC
Confidence 3688889999999999999999887 5654567788899998852 557888875 8899999876
Q ss_pred CcccCcccCCCCCeEEEEeeCChhHHHHHHHHH
Q psy788 86 AFYSDEHKHLGENLIRYCFFKKDETLREASSIL 118 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l 118 (126)
.|.. .++|+|++++. .++++..++.|
T Consensus 325 ~~~~------~~~~iRis~~~-~~e~~~l~~al 350 (351)
T PRK01688 325 KQPG------LSNCLRITIGT-REECQRVIDAL 350 (351)
T ss_pred CcCC------CCCeEEEeCCC-HHHHHHHHHhh
Confidence 6532 36799999996 34445554443
No 103
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=98.83 E-value=6.2e-08 Score=71.06 Aligned_cols=91 Identities=11% Similarity=-0.008 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788 10 FYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS 89 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~ 89 (126)
...+++.++++++.+.+.|++.++++. |.+|.++|+.++.. . ++.+|.+.|. ++||.+.|+..|+.
T Consensus 267 ~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~---~---------~~~~~~~~l~-~~gI~v~~~~~~~~ 332 (360)
T TIGR00858 267 EPWRREKLLALIARLRAGLEALGFTLM-PSCTPIVPVIIGDN---A---------SALALAEELQ-QQGIFVGAIRPPTV 332 (360)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCccC-CCCCCEEEEEeCCH---H---------HHHHHHHHHH-HCCeeEeeeCCCCC
Confidence 356789999999999999988777665 45677999998742 1 3668888875 78999999877653
Q ss_pred CcccCCCCCeEEEEeeC--ChhHHHHHHHHH
Q psy788 90 DEHKHLGENLIRYCFFK--KDETLREASSIL 118 (126)
Q Consensus 90 ~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l 118 (126)
. .+.+++|++++. ++++++.++++|
T Consensus 333 ~----~~~~~iRis~~~~~~~~~i~~~l~~l 359 (360)
T TIGR00858 333 P----AGTSRLRLTLSAAHTPGDIDRLAEAL 359 (360)
T ss_pred C----CCCceEEEEEcCCCCHHHHHHHHHhh
Confidence 2 245799999985 888899988876
No 104
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=98.82 E-value=1.4e-07 Score=68.61 Aligned_cols=94 Identities=31% Similarity=0.447 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCC-cccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 8 CYFYTISEELRPKREILADALDKAGM-VPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~g~-~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
.+.+++++.++++++.+.+.|.+.+. .+..|.+|+|+|+.++.. .+.++...++.+.||.+.++..
T Consensus 255 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~-------------~~~~~~~~~l~~~gi~i~~~~~ 321 (350)
T cd00609 255 EHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEG-------------DDEEFLERLLLEAGVVVRPGSA 321 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCC-------------ChHHHHHHHHHhCCEEEecccc
Confidence 68899999999999999999998743 336789999999998753 1334444556788999999988
Q ss_pred cccCcccCCCCCeEEEEeeCChhHHHHHHHHHH
Q psy788 87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQ 119 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~ 119 (126)
|... .+.++|++++...++++..++.|.
T Consensus 322 ~~~~-----~~~~iRi~~~~~~~~i~~~~~al~ 349 (350)
T cd00609 322 FGEG-----GEGFVRLSFATPEEELEEALERLA 349 (350)
T ss_pred cccC-----CCCeEEEEeeCCHHHHHHHHHHhh
Confidence 8642 468999999987888888888774
No 105
>PLN02483 serine palmitoyltransferase
Probab=98.81 E-value=1.3e-07 Score=73.06 Aligned_cols=99 Identities=13% Similarity=0.067 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
.+..++++.|+++++++.+.|+++|+.+..+.++..+|+-+.... +..+|++.|+ ++||.+.| ..|
T Consensus 365 ~~~~~~~~~l~~~~~~l~~~L~~~G~~v~~~~~sp~~~l~l~~~~------------~~~~~~~~Ll-~~GI~v~~-~~f 430 (489)
T PLN02483 365 NRGAQKLAQIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPA------------KIPAFSRECL-KQNVAVVV-VGF 430 (489)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCCEEEEEECCHH------------HHHHHHHHHH-HCCcEEee-eCC
Confidence 455667889999999999999988888777777778887765321 2457888876 67999998 566
Q ss_pred ccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 88 YSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
.... ...+++|++++. ++++|++++++|.+++.
T Consensus 431 p~~p---~~~~~vRi~isa~~t~edId~~l~~L~~~~~ 465 (489)
T PLN02483 431 PATP---LLLARARICISASHSREDLIKALEVISEVGD 465 (489)
T ss_pred CCCC---CCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 4321 235789999984 88999999999988754
No 106
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=98.79 E-value=1.7e-07 Score=69.57 Aligned_cols=88 Identities=10% Similarity=0.038 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788 9 YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY 88 (126)
Q Consensus 9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~ 88 (126)
++.+.++.++++++.+.+.|+++|+.+..|+|+|++|.+++ ++.++.+.|. ++||.+.|+ +
T Consensus 276 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~-~~Gv~v~~~---~ 336 (368)
T PRK03317 276 ELLASVAALRAERDRVVAWLRELGLRVAPSDANFVLFGRFA---------------DRHAVWQGLL-DRGVLIRDV---G 336 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEeCCCCCcEEEEeccC---------------CHHHHHHHHH-HCCEEEEeC---C
Confidence 34455677899999999999888888889999999987653 2557777764 789999873 2
Q ss_pred cCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788 89 SDEHKHLGENLIRYCFFKKDETLREASSILQTWRN 123 (126)
Q Consensus 89 ~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~ 123 (126)
.++++|++++. .++++..++.|.++++
T Consensus 337 -------~~~~iRi~~~~-~~~~~~~~~~l~~~~~ 363 (368)
T PRK03317 337 -------IPGWLRVTIGT-PEENDAFLAALAEVLA 363 (368)
T ss_pred -------CCCeEEEecCC-HHHHHHHHHHHHHHHH
Confidence 24799999986 4456777777766654
No 107
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=98.76 E-value=2.5e-07 Score=68.43 Aligned_cols=89 Identities=13% Similarity=0.098 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 7 KCYFYTISEELRPKREILADALDKAG-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
.+++++.++.++++|+.+.+.|++++ +++.+|+ |.|+|++++. +.++.+.| .++||.|.+++
T Consensus 262 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~-g~f~~~~~~~---------------~~~~~~~l-~~~gv~v~~~~ 324 (354)
T PRK04635 262 LARMKFQVLDLNAQGARLQAALSMYGGAKVLEGN-GNYVLAKFDD---------------VDAVFKAL-WDAGIVARAYK 324 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCC-CcEEEEECCC---------------HHHHHHHH-HHCCEEEEECC
Confidence 35678888999999999999999884 7777775 5689998862 44676665 68899998754
Q ss_pred CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788 86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQT 120 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~ 120 (126)
.+. .++++|++|+. .++++..++.|.+
T Consensus 325 ~~~-------~~~~lRis~~~-~e~~~~l~~al~~ 351 (354)
T PRK04635 325 DPR-------LANCIRFSFSN-RAETDKLIGLIRN 351 (354)
T ss_pred CCC-------CCCeEEEEeCC-HHHHHHHHHHHHH
Confidence 321 36799999986 4555666666643
No 108
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=98.75 E-value=1.3e-07 Score=70.03 Aligned_cols=94 Identities=10% Similarity=-0.053 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788 11 YTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD 90 (126)
Q Consensus 11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~ 90 (126)
..+++.+.++++.+.+.|++.++++..|.|+ |+|+.++.. . ++.++.+.|. ++||.+.|+..+...
T Consensus 290 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~---~---------~~~~~~~~l~-~~gI~v~~~~~~~~~ 355 (385)
T PRK05958 290 PERRERLAALIARLRAGLRALGFQLMDSQSA-IQPLIVGDN---E---------RALALAAALQ-EQGFWVGAIRPPTVP 355 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCCCCC-EEEEEeCCH---H---------HHHHHHHHHH-HCCceEecccCCCCC
Confidence 5678899999999999998878877777666 667877642 1 3667888875 789999996655322
Q ss_pred cccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhh
Q psy788 91 EHKHLGENLIRYCFFK--KDETLREASSILQTWR 122 (126)
Q Consensus 91 ~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~ 122 (126)
.+++++|++++. +++++++++++|.+++
T Consensus 356 ----~~~~~lRis~~~~~~~~~i~~~l~~l~~~~ 385 (385)
T PRK05958 356 ----AGTSRLRITLTAAHTEADIDRLLEALAEAL 385 (385)
T ss_pred ----CCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence 145799999983 8899999999997653
No 109
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=98.73 E-value=3.7e-07 Score=67.00 Aligned_cols=83 Identities=17% Similarity=0.228 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcc--eEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGG--YFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
..|.+.+++.|+++|+.+.+.|+++++. |.|| +|+|+..+ ++.++++.| .++||.|.+
T Consensus 238 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~---~~~~~~~f~~~~~~---------------~~~~~~~~l-~~~gi~v~~- 297 (330)
T PRK05664 238 TPWQRRQRERLLAASQRLAALLRRHGLT---PAGGCALFQWVRTE---------------DAAALHEFL-ARRGILTRL- 297 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCCc---ccCCcceEEEEecC---------------CHHHHHHHH-HHCCeEEEE-
Confidence 3678899999999999999999987653 5566 67777653 256787876 588999974
Q ss_pred CCcccCcccCCCCCeEEEEeeCCh---hHHHHHHHHH
Q psy788 85 SAFYSDEHKHLGENLIRYCFFKKD---ETLREASSIL 118 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~~~~---e~i~~~~~~l 118 (126)
|+ . .+++||+++.+. +.+.++++.+
T Consensus 298 --f~-~------~~~iRis~~~~~~~~~~l~~al~~~ 325 (330)
T PRK05664 298 --FE-Q------PASLRFGLPADEADWARLDQALLAY 325 (330)
T ss_pred --CC-C------CCeEEEECCCCHHHHHHHHHHHHHH
Confidence 53 2 469999999533 3444455444
No 110
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=98.70 E-value=3.9e-07 Score=67.92 Aligned_cols=87 Identities=11% Similarity=0.022 Sum_probs=66.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
...|++.+++.++++++.+.+.++.+|+++.+|+|. |+|++++. ..++...|+ ++||.|.|
T Consensus 267 ~~~~~~~~~~~~~~~r~~~~~~l~~~g~~~~~~~~n-f~~~~~~~---------------~~~~~~~l~-~~GI~Vr~-- 327 (366)
T PRK01533 267 DDEFIEEIVRVNTEGLRQYESFCKENEIPFYQSQTN-FIFLPVEN---------------GGEIYEACA-HAGFIIRP-- 327 (366)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcCc-EEEEeCCC---------------HHHHHHHHH-HCCcEEcc--
Confidence 367999999999999999999998888888888655 89998852 446778765 89999998
Q ss_pred CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788 86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~ 122 (126)
| ++++||+++..+ +.+..++.|.+++
T Consensus 328 -~---------~~~iRis~~~~~-~~~~l~~al~~~~ 353 (366)
T PRK01533 328 -F---------PNGVRITVGTRE-QNEGVISVLQQHF 353 (366)
T ss_pred -C---------CCceEEeCCCHH-HHHHHHHHHHHHH
Confidence 3 157999999843 3355555554443
No 111
>PRK08354 putative aminotransferase; Provisional
Probab=98.67 E-value=3e-07 Score=66.93 Aligned_cols=81 Identities=20% Similarity=0.223 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
+++++.++.+.++++.+.+.+ ..+|+|+||+ ++++ ++.++++.| .++||.|.||+.|
T Consensus 227 ~~~~~~~~~~~~~~~~l~~~l------~~~~~~~~~~-~~~~---------------~~~~~~~~l-~~~gv~v~~g~~f 283 (311)
T PRK08354 227 EHLRKTMPLIWREKERFEKAL------YVKSDANFFI-KDVG---------------DAEKFVEFL-KRNGILVRDCTSF 283 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHhc------CCCCCCcEEE-EECC---------------CHHHHHHHH-HHCCeEEEecccC
Confidence 455555666666555544433 2367888666 5543 255788876 5889999999999
Q ss_pred ccCcccCCCCCeEEEEeeCC--hhHHHHHHHHH
Q psy788 88 YSDEHKHLGENLIRYCFFKK--DETLREASSIL 118 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~~~--~e~i~~~~~~l 118 (126)
+. ++|+||+|+.+ .+.+..+++.+
T Consensus 284 ~~-------~~~iRi~~~~~~~~~~l~~al~~~ 309 (311)
T PRK08354 284 GL-------PGYIRFSVRDREENEKLIRALREW 309 (311)
T ss_pred CC-------CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 52 47999999973 35566666554
No 112
>PRK03321 putative aminotransferase; Provisional
Probab=98.66 E-value=5.9e-07 Score=66.21 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=63.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788 4 APDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP 83 (126)
Q Consensus 4 ~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p 83 (126)
...+.|.+.+++.+ ++|+.+.+.|.+.|+.+. |.+|+|+|++++. ++.++++.| .++||.+.|
T Consensus 260 ~~~~~~~~~~~~~~-~~r~~~~~~L~~~~~~~~-~~~g~~i~i~l~~--------------~~~~~~~~l-~~~gI~v~~ 322 (352)
T PRK03321 260 AAEDELLERVDAVV-AERDRVRAALRAAGWTVP-PSQANFVWLPLGE--------------RTADFAAAA-AEAGVVVRP 322 (352)
T ss_pred cCHHHHHHHHHHHH-HHHHHHHHHHHHCCCccC-CCCCCEEEEeCCC--------------CHHHHHHHH-HHCCEEEEc
Confidence 34455666565554 566788999988777654 4568899999853 256788886 589999987
Q ss_pred CCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhh
Q psy788 84 PSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122 (126)
Q Consensus 84 g~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~ 122 (126)
|+ .+++|++++. .++++..++.|.+++
T Consensus 323 ---~~--------~~~iRi~~~~-~~~~~~~~~al~~~~ 349 (352)
T PRK03321 323 ---FA--------GEGVRVTIGA-PEENDAFLRAARAWR 349 (352)
T ss_pred ---cC--------CCcEEEeeCC-HHHHHHHHHHHHHHh
Confidence 43 2459999986 444577777776654
No 113
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=98.59 E-value=9.1e-07 Score=66.27 Aligned_cols=102 Identities=12% Similarity=0.076 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 9 YFYTISEELRPKREILADALDKAGMVPV-IPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~-~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
+..+.++.++++++.+.+.|.++|+.+. .|++++|+|++++... . +...+.+. +.++||.+.++...
T Consensus 276 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~v~v~~~~~~--~---------~~~~~~~~-l~~~gI~v~~~~~p 343 (402)
T cd00378 276 EFKAYAKQVVENAKALAEALKERGFKVVSGGTDNHLVLVDLRPKG--I---------TGKAAEDA-LEEAGITVNKNTLP 343 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEeecCCCCeEEEEeCCccC--C---------CHHHHHHH-HHHcCcEEcCCcCC
Confidence 5667888899999999999988887764 5789999999997432 1 23455554 57899999874432
Q ss_pred ccCcccCCCCCeEEEEeeC------ChhHHHHHHHHHHHhhh
Q psy788 88 YSDEHKHLGENLIRYCFFK------KDETLREASSILQTWRN 123 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~~------~~e~i~~~~~~l~~~~~ 123 (126)
+... +.....++|+++.. ++++++..++.|.++++
T Consensus 344 ~~~~-~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~ 384 (402)
T cd00378 344 WDPS-SPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALK 384 (402)
T ss_pred CCCC-CCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 2210 00134689998865 37889999999988765
No 114
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=98.57 E-value=1.4e-06 Score=64.23 Aligned_cols=86 Identities=16% Similarity=0.153 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
.+|+.+.++.+.++|+.+.+.|++.|+++.+|+|+ |+|+.++.. +..++.+.| .++||.|.+
T Consensus 248 ~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~g~-f~~~~l~~~-------------~~~~~~~~l-~~~Gi~V~~--- 309 (335)
T PRK14808 248 REIFEERTKFIVEERERMKSALREMGYRITDSRGN-FVFIFMEKE-------------EKERLLEHL-RAKNIAVRS--- 309 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCe-EEEEeCCCc-------------cHHHHHHHH-HHCCeEEEE---
Confidence 35777888888999999999999888888788666 779998742 256777775 588999984
Q ss_pred cccCcccCCCCCeEEEEeeCChhHHHHHHHHHHH
Q psy788 87 FYSDEHKHLGENLIRYCFFKKDETLREASSILQT 120 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~ 120 (126)
| .+++|++++.+ ++.+..++.|.+
T Consensus 310 ~---------~~~~Risi~~~-~~~~~~~~~l~~ 333 (335)
T PRK14808 310 F---------REGVRITIGKR-EENDMILKELEV 333 (335)
T ss_pred C---------CCCeEEecCCH-HHHHHHHHHHHh
Confidence 3 24799999984 444566665543
No 115
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=98.54 E-value=2.1e-06 Score=62.96 Aligned_cols=94 Identities=14% Similarity=0.150 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccCC---CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 9 YFYTISEELRPKREILADALDKAGMVPVIP---DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p---~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
++...+++++++++++.+.|++.|+++..| .+++++|+.++.... . +..++.+.| .++||.+.||.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~l-~~~gi~i~~~~ 324 (355)
T TIGR03301 256 GVPARIARYRRNRELLVDGLRALGFQPLLPERWQSPIIVSFLYPDDPD-F---------DFDDFYQEL-KERGFVIYPGK 324 (355)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCcEEEEECCCCCc-c---------hHHHHHHHH-HHCCEEEECCc
Confidence 367778899999999999998887765332 457788998874210 1 245788875 58899999986
Q ss_pred CcccCcccCCCCCeEEEEee-C-ChhHHHHHHHHHHHh
Q psy788 86 AFYSDEHKHLGENLIRYCFF-K-KDETLREASSILQTW 121 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~-~-~~e~i~~~~~~l~~~ 121 (126)
.+. .+++|+++. . +.++++.+++.|.++
T Consensus 325 ~~~--------~~~iRis~~~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 325 LTL--------ADTFRIGTIGEIDAADIERLLEAIKDA 354 (355)
T ss_pred ccc--------ccEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 542 368999985 3 889999999998765
No 116
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=98.52 E-value=2.2e-06 Score=64.56 Aligned_cols=96 Identities=10% Similarity=-0.004 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788 11 YTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD 90 (126)
Q Consensus 11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~ 90 (126)
...++.++++++.+.+.|.+.|+++.+|+++++ .+.++.. . +..++++.|+.++||.+.|+......
T Consensus 299 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~-~i~~~~~----~--------~~~~~~~~L~~~~GI~v~~~~~p~~~ 365 (410)
T PRK13392 299 QTERDAHQDRVAALKAKLNANGIPVMPSPSHIV-PVMVGDP----T--------LCKAISDRLMSEHGIYIQPINYPTVP 365 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCEE-EEEeCCH----H--------HHHHHHHHHHHhCCEEEeeeCCCCCC
Confidence 456788999999999999888888878888865 3444321 0 25678888766789999997544322
Q ss_pred cccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788 91 EHKHLGENLIRYCFF--KKDETLREASSILQTWRN 123 (126)
Q Consensus 91 ~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~ 123 (126)
.+..++|+++. .++++++..++.|.++.+
T Consensus 366 ----~~~~~lRis~~~~~t~edid~l~~aL~~~~~ 396 (410)
T PRK13392 366 ----RGTERLRITPTPLHDDEDIDALVAALVAIWD 396 (410)
T ss_pred ----CCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 24579999996 388889999999987765
No 117
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=98.52 E-value=4.2e-06 Score=61.68 Aligned_cols=94 Identities=10% Similarity=0.030 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccC-C--CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhC-CeeEeCCC
Q psy788 10 FYTISEELRPKREILADALDKAGMVPVI-P--DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNV-KLQGIPPS 85 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~-p--~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-gV~v~pg~ 85 (126)
++.+.+.++++++.+.+.|.+.|+++.. | .+++++|+.++.. . +..++++.|. ++ ||.+.||.
T Consensus 257 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~L~-~~~gI~~~~g~ 323 (356)
T cd06451 257 LENRWARHRRLAKALREGLEALGLKLLAKPELRSPTVTAVLVPEG---V---------DGDEVVRRLM-KRYNIEIAGGL 323 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCCceEEEECCCC---C---------CHHHHHHHHH-HhCCEEEeccc
Confidence 4667788888899999999887766643 2 2566778877642 1 3668888875 65 99999987
Q ss_pred CcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 86 AFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
.+. .++++|++++. ++++++..++.|.++++
T Consensus 324 ~~~-------~~~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 324 GPT-------AGKVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred ccc-------cCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 432 35799999984 78999999999988764
No 118
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=98.50 E-value=2.9e-06 Score=64.71 Aligned_cols=108 Identities=16% Similarity=0.214 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC-CCCccc
Q psy788 11 YTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP-PSAFYS 89 (126)
Q Consensus 11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p-g~~f~~ 89 (126)
+.++..++ +++++.+.|.+.|+++..|.||+|+|++++.....++ ... .++.+|+.+|+.+.||.++. |+....
T Consensus 291 ~~l~~~~~-~r~~l~~~L~~~G~~v~~P~Ggh~v~~d~~~~~~~~~---~~~-~~~~~la~~L~~e~gV~~~~~g~~~~~ 365 (431)
T cd00617 291 DYLRHRVE-QVRYLGDRLDEAGVPIVEPAGGHAVFIDAREFLPHIP---QEQ-FPAQALAAELYLEAGVRAVELGIFSAG 365 (431)
T ss_pred HHHHHHHH-HHHHHHHHHHHCCCCccCCCcceEEEEEhHHhcCCCC---ccc-CcHHHHHHHHHHHcCeeEEeecceecc
Confidence 44555565 4488999999889999999999999999986321010 000 14788999999999999654 664332
Q ss_pred -Ccc----cCCCCCeEEEEeeC---ChhHHHHHHHHHHHhhh
Q psy788 90 -DEH----KHLGENLIRYCFFK---KDETLREASSILQTWRN 123 (126)
Q Consensus 90 -~~~----~~~~~~~~Rl~~~~---~~e~i~~~~~~l~~~~~ 123 (126)
+++ ..+....+||++.+ +.+.++.-.+.|..+.+
T Consensus 366 ~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~ 407 (431)
T cd00617 366 RDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYE 407 (431)
T ss_pred cCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHh
Confidence 211 01124789999975 66777777777766655
No 119
>PRK10534 L-threonine aldolase; Provisional
Probab=98.42 E-value=6.8e-06 Score=60.11 Aligned_cols=78 Identities=12% Similarity=0.137 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCCC
Q psy788 18 RPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGE 97 (126)
Q Consensus 18 ~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~ 97 (126)
.++|+.+.+.|.++|+++.+| ++.|+|++++.. +..++.+. +.++||.+.||.
T Consensus 253 ~~~r~~l~~~L~~~g~~~~~~-~~nfv~~~~~~~-------------~~~~~~~~-l~~~gi~v~~~~------------ 305 (333)
T PRK10534 253 HDNAAWLAEQLREAGADVMRQ-DTNMLFVRVGEE-------------QAAALGEY-MRERNVLINASP------------ 305 (333)
T ss_pred HHHHHHHHHHHHhCCCccCCC-CceEEEEECCch-------------hHHHHHHH-HHHcCeeecCCc------------
Confidence 345678999998888888777 588999998731 25567665 568899998863
Q ss_pred CeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788 98 NLIRYCFF--KKDETLREASSILQTWRN 123 (126)
Q Consensus 98 ~~~Rl~~~--~~~e~i~~~~~~l~~~~~ 123 (126)
++|++++ .+++++++.+++|.+++.
T Consensus 306 -~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 306 -IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred -eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 3566664 378999999999987764
No 120
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=98.41 E-value=8.4e-06 Score=60.86 Aligned_cols=96 Identities=13% Similarity=0.092 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788 10 FYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS 89 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~ 89 (126)
.+++++.++++++.+.+.|.+.|+.+..|.++ ++.+.++.. . ++.+|++.|. ++||.+. +..|..
T Consensus 291 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~i~~~~~---~---------~~~~l~~~L~-~~gI~v~-~~~~~~ 355 (393)
T TIGR01822 291 SNELRDRLWANTRYFRERMEAAGFDIKPADHP-IIPVMLYDA---V---------LAQRFARRLL-EEGIYVT-GFFYPV 355 (393)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-EEEEEeCCH---H---------HHHHHHHHHH-HCCeeEe-eeCCCC
Confidence 45788999999999999998777777666665 344444421 1 3567888876 6699998 555532
Q ss_pred CcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 90 DEHKHLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 90 ~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
.. .+...+|++++. +++++++++++|.++.+
T Consensus 356 ~~---~~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 388 (393)
T TIGR01822 356 VP---KGQARIRVQISAAHTEEQLDRAVEAFTRIGR 388 (393)
T ss_pred CC---CCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 21 134579988874 78999999999988765
No 121
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=98.35 E-value=1.5e-05 Score=58.34 Aligned_cols=94 Identities=11% Similarity=0.009 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788 11 YTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD 90 (126)
Q Consensus 11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~ 90 (126)
..++++++++++.+.+.|.+.|+++..+.++++.++.++.. . +..+++..|. ++||.+.|+. |...
T Consensus 253 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~L~-~~gI~~~~~~-~~~~ 318 (349)
T cd06454 253 PERRERLQENVRYLRRGLKELGFPVGGSPSHIIPPLIGDDP---A---------KAVAFSDALL-ERGIYVQAIR-YPTV 318 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcEEEEeCCCh---H---------HHHHHHHHHH-hCCceEEEec-CCcc
Confidence 56788999999999999988777776666666555544321 1 3567888876 6699999864 3221
Q ss_pred cccCCCCCeEEEEeeC--ChhHHHHHHHHHHHh
Q psy788 91 EHKHLGENLIRYCFFK--KDETLREASSILQTW 121 (126)
Q Consensus 91 ~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~ 121 (126)
. .+.+++|++++. +++++++.+++|.++
T Consensus 319 ~---~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 319 P---RGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred C---CCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 135799999984 889999999998753
No 122
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=98.33 E-value=1.6e-05 Score=59.18 Aligned_cols=94 Identities=13% Similarity=0.070 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCc
Q psy788 12 TISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDE 91 (126)
Q Consensus 12 ~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~ 91 (126)
++.++++++++++.+.|.+.|+++..|++.+ +++.++.. . ++.+|++.|+ ++||.+ ++..|+...
T Consensus 285 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~~~~~~~~---~---------~~~~~~~~L~-~~gi~v-~~~~~~~~~ 349 (385)
T TIGR01825 285 ELMERLWDNTRFFKAGLGKLGYDTGGSETPI-TPVVIGDE---K---------AAQEFSRRLF-DEGIFA-QSIVFPTVP 349 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCE-EEEEECCH---H---------HHHHHHHHHH-HCCcEE-cccCCCCCC
Confidence 4667788899999999988888888888774 44445421 0 3567888876 559987 555565321
Q ss_pred ccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788 92 HKHLGENLIRYCFF--KKDETLREASSILQTWRN 123 (126)
Q Consensus 92 ~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~ 123 (126)
.+.+++|++.+ .+++++++++++|.++++
T Consensus 350 ---~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~ 380 (385)
T TIGR01825 350 ---RGTARIRNIPTAEHTKDDLDQALDAYEKVGK 380 (385)
T ss_pred ---CCCceEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 24578999875 489999999999998875
No 123
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=98.32 E-value=1e-05 Score=61.40 Aligned_cols=104 Identities=10% Similarity=0.045 Sum_probs=68.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDG-GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~g-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
.+++++++++..+..++.+.+...+.+. +..+.| |+++|+.+.... +. ...+.....++...+. +.||.+.|+
T Consensus 317 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~v~g~G~~~~l~l~~~~---~~-~~p~~~~~~~l~~~~~-~~Gv~~~~~ 390 (425)
T PRK08088 317 QENLLQKANALGEKLKDGLLAIAEKHPE-IGDVRGLGAMIAIELFEDG---DH-SKPNAKLTAQIVARAR-DKGLILLSC 390 (425)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEeccceEEEEEEecCC---CC-CCCCHHHHHHHHHHHH-hCCCEEecC
Confidence 3468888888877777766666555532 222223 889999995321 00 0000012557777764 789998875
Q ss_pred CCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788 85 SAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNK 124 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~ 124 (126)
..| .+.+||+++. ++++|++++++|.+++.+
T Consensus 391 ~~~---------~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~ 423 (425)
T PRK08088 391 GPY---------YNVLRILVPLTIEDAQIRQGLEIIAQCFDE 423 (425)
T ss_pred CCC---------CCEEEEECCCCcCHHHHHHHHHHHHHHHHh
Confidence 333 3679999994 789999999999988763
No 124
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=98.31 E-value=7.4e-06 Score=60.32 Aligned_cols=81 Identities=14% Similarity=0.091 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
+|+.+.++.+.++|+.+.+.|.+. ..|.+|+|+|++++ +.+.|+ ++||.|.+++..
T Consensus 251 ~~~~~~~~~~~~~r~~l~~~L~~~----~~~~~~~~~~~~~~-------------------~~~~l~-~~gi~v~~~~~~ 306 (337)
T PRK03967 251 DLIEERIDYIIKERERVRRELGEY----AYPSDANFLLLKLD-------------------AYDYLL-ENGIVVRKLSGR 306 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC----cCCCCCcEEEEhHH-------------------HHHHHH-HCCEEEEeCCCC
Confidence 366666666677788888888753 35789999998653 335554 679999986421
Q ss_pred ccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHH
Q psy788 88 YSDEHKHLGENLIRYCFFK--KDETLREASSILQT 120 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~ 120 (126)
.++++|++++. +.+.+..+++++.+
T Consensus 307 --------~~~~~Ri~~~~~~~~~~l~~~l~~~~~ 333 (337)
T PRK03967 307 --------LEGHIRVTVGKREENDEFIKALKEIKE 333 (337)
T ss_pred --------CCCeEEEecCCHHHHHHHHHHHHHHHH
Confidence 35799999997 34556666666543
No 125
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=98.27 E-value=1.3e-05 Score=60.35 Aligned_cols=91 Identities=14% Similarity=0.210 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 12 TISEELRPKREILADALDKAG----MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 12 ~~r~~~~~r~~~l~~~l~~~g----~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
.+++.|+++++.+.+.|++.+ +....+.+|+++|+.++.... . ++.+|+..|+ ++||.+.|+
T Consensus 304 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~~--~--------~~~~~~~~l~-~~Gv~v~~~--- 369 (403)
T PRK05093 304 EVLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQYK--G--------RARDFLNAAA-EEGVMVLVA--- 369 (403)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcch--h--------HHHHHHHHHH-HCCeEEecC---
Confidence 467889999999999998762 223456789999999864210 0 3567888875 779999873
Q ss_pred ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788 88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK 124 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~ 124 (126)
+.+++|++++ .+++++++++++|.+++.+
T Consensus 370 --------g~~~lRl~~~~~~~~~~i~~~~~~l~~~l~~ 400 (403)
T PRK05093 370 --------GPDVLRFAPSLVIEEADIDEGLARFEKAVAK 400 (403)
T ss_pred --------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2468999655 4889999999999988754
No 126
>PLN02721 threonine aldolase
Probab=98.22 E-value=4.3e-05 Score=56.08 Aligned_cols=91 Identities=16% Similarity=0.184 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhC-CCc--ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 8 CYFYTISEELRPKREILADALDKA-GMV--PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~--~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
+++..+++. .++++.+.+.|+++ ++. +..|.++ |+|++++... .. +...+++.|. ++||.+.|+
T Consensus 255 ~~~~~~~~~-~~~~~~l~~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~---------~~~~~~~~L~-~~gi~v~~~ 321 (353)
T PLN02721 255 ENVPKLEDD-HKKAKLLAEGLNQIKGLRVNVAAVETN-IVYFDITDGS-RI---------TAEKLCKSLE-EHGVLLMPG 321 (353)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhCCCcEEecCCccce-EEEEEccCCc-cc---------cHHHHHHHHH-hCCcEEecC
Confidence 445555544 45678899999887 663 4455555 6999987420 01 3567888875 899999996
Q ss_pred CCcccCcccCCCCCeEEEEee-C-ChhHHHHHHHHHHHhh
Q psy788 85 SAFYSDEHKHLGENLIRYCFF-K-KDETLREASSILQTWR 122 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~-~-~~e~i~~~~~~l~~~~ 122 (126)
. .+++|++++ . +++++++.++.|.+++
T Consensus 322 ~-----------~~~lR~~~~~~~~~~~i~~~~~~l~~~~ 350 (353)
T PLN02721 322 N-----------SSRIRVVTHHQISDSDVQYTLSCFQQAA 350 (353)
T ss_pred C-----------CceEEEEecCcCCHHHHHHHHHHHHHHh
Confidence 2 358999997 3 8889999999998765
No 127
>PRK09064 5-aminolevulinate synthase; Validated
Probab=98.22 E-value=4.8e-05 Score=57.25 Aligned_cols=95 Identities=15% Similarity=0.046 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCc
Q psy788 12 TISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDE 91 (126)
Q Consensus 12 ~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~ 91 (126)
..++.++++++.+.+.|.+.|+++..+.++ ++++.++... ...++++.|+.+.||.+.|...+...
T Consensus 300 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-iv~i~~~~~~------------~~~~l~~~L~~~~gi~v~~~~~p~~~- 365 (407)
T PRK09064 300 EERERHQERAAKLKAALDAAGIPVMPNESH-IVPVMVGDPE------------KCKKASDMLLEEHGIYVQPINYPTVP- 365 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-EEEEEeCCHH------------HHHHHHHHHHHhCCEEEeeECCCCCC-
Confidence 346788899999999998888877666665 5566665310 35678888765679999986543221
Q ss_pred ccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 92 HKHLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 92 ~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
.+.+++|++.+. ++++++..++.|.++++
T Consensus 366 ---~~~~~lRis~~~~~t~edi~~l~~~l~~~~~ 396 (407)
T PRK09064 366 ---RGTERLRITPTPFHTDEMIDHLVEALVEVWA 396 (407)
T ss_pred ---CCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 245789999973 88899999999988765
No 128
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=98.22 E-value=4.8e-05 Score=56.32 Aligned_cols=96 Identities=7% Similarity=-0.012 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccCC---CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 9 YFYTISEELRPKREILADALDKAGMVPVIP---DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p---~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
.++.++++++++++++.+.|++.|+.+..+ .++...|+.++... .+ +..++.+.| .++||.+.||.
T Consensus 261 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~v~~~L-~~~gi~v~~g~ 329 (363)
T TIGR02326 261 GVAARHQRYQQNQKTLVAGMRALGFEPLLDDEIQSPIITSFYSPEDP-DY---------RFADFYQRL-KEQGFVIYPGK 329 (363)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCceEEEEECCCCC-CC---------CHHHHHHHH-HHCCEEEECCc
Confidence 356788999999999999998887665332 56677788876421 01 245677776 58899999997
Q ss_pred CcccCcccCCCCCeEEEEe-eC-ChhHHHHHHHHHHHhhh
Q psy788 86 AFYSDEHKHLGENLIRYCF-FK-KDETLREASSILQTWRN 123 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~-~~-~~e~i~~~~~~l~~~~~ 123 (126)
.+. .+++|+++ +. +.++++..++.|.+++.
T Consensus 330 ~~~--------~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 330 VSQ--------VDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred CCC--------CCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 552 46899996 54 88899999999987653
No 129
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=98.19 E-value=3.5e-05 Score=57.45 Aligned_cols=89 Identities=19% Similarity=0.196 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
+.+++++++..+..++.+.+.+.+++.....+..|+++|++++. +..++.+.+ .++||.+.|+
T Consensus 284 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~--------------~~~~~~~~l-~~~Gi~v~~~-- 346 (375)
T PRK04260 284 AGFLEQALENGNYLQEQLQKALQDKETVTTVRGLGYMIGIETTA--------------DLSQLVEAA-RDKGLIVLTA-- 346 (375)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEeccceEEEEEecC--------------cHHHHHHHH-HhCCCEEecC--
Confidence 46888999999999999988887764222333489999999853 255788886 4889999774
Q ss_pred cccCcccCCCCCeEEEEee-C-ChhHHHHHHHHHHHh
Q psy788 87 FYSDEHKHLGENLIRYCFF-K-KDETLREASSILQTW 121 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~-~-~~e~i~~~~~~l~~~ 121 (126)
+.+.+|++.. . +++++++++++|.++
T Consensus 347 ---------~~~~lR~~~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 347 ---------GTNVIRLLPPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred ---------CCCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence 1367999995 3 889999999999765
No 130
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=98.18 E-value=5.5e-05 Score=56.55 Aligned_cols=91 Identities=15% Similarity=0.058 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
++++++++..+..++.+.+.+.+++.....+..|+|+|++++. ++.+++..++ ++||.+.|+.
T Consensus 302 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--------------~~~~~~~~l~-~~Gv~v~~~~-- 364 (396)
T PRK02627 302 GLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIELDR--------------PAAEIVKKAL-EKGLLINVTG-- 364 (396)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCeeeeccCcEEEEEEecC--------------cHHHHHHHHH-HCCeEEeecC--
Confidence 3444555544444444544444332211223457899999842 3668888876 6699999852
Q ss_pred ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788 88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK 124 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~ 124 (126)
.+++|++++ .+++++++++++|.+++++
T Consensus 365 ---------~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~ 394 (396)
T PRK02627 365 ---------DNVLRLLPPLIISKEEIDEAVDRLEEVLKE 394 (396)
T ss_pred ---------CCEEEEECCcccCHHHHHHHHHHHHHHHHh
Confidence 357999875 4899999999999988764
No 131
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=98.15 E-value=8.3e-05 Score=55.91 Aligned_cols=96 Identities=9% Similarity=0.000 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788 11 YTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD 90 (126)
Q Consensus 11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~ 90 (126)
..+++.++++++.+.+.|++.|+++..+.|++ +.+.++.. . ...++++.|+.+.||.+.|.......
T Consensus 298 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~i-~~i~~~~~----~--------~a~~~~~~L~~~~Gi~v~~~~~p~~~ 364 (402)
T TIGR01821 298 QDLRRAHQENVKRLKNLLEALGIPVIPNPSHI-VPVIIGDA----A--------LCKKVSDLLLNKHGIYVQPINYPTVP 364 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCE-EEEEeCCH----H--------HHHHHHHHHHhcCCEEEEeECCCCCC
Confidence 34566777888899999988888877777774 45555421 0 25578888765679999996533322
Q ss_pred cccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 91 EHKHLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 91 ~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
.+..++|+++.. ++++++..++.|.++++
T Consensus 365 ----~g~~~lRis~~~~~t~edi~~~~~~l~~~~~ 395 (402)
T TIGR01821 365 ----RGTERLRITPTPAHTDKMIDDLVEALLLVWD 395 (402)
T ss_pred ----CCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 245789999963 88899999999887765
No 132
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=98.13 E-value=9.5e-05 Score=55.20 Aligned_cols=97 Identities=19% Similarity=0.153 Sum_probs=72.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCCCc-ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 6 DKCYFYTISEELRPKREILADALDKAGMV-PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~g~~-~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
+++|+++.+....+.|..+.+.|+++|+. +.+++ +=|++++++.. ....+.+.|+ ++||.|.+.
T Consensus 257 ~~~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS~-aNFvlv~~~~~-------------~~~~l~~~L~-~~giivR~~ 321 (356)
T COG0079 257 DADYLEESVERIREERERLYAALKALGLFGVFPSQ-ANFVLVRVPDA-------------EAAALAEALL-KKGILVRDC 321 (356)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCC-CcEEEEECCCc-------------cHHHHHHHHH-HCCEEEEeC
Confidence 34899999999999999999999988744 55555 55888998751 2346777764 779999997
Q ss_pred CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
+. .. ..++|+|++++++++. +.-++.|.++++.
T Consensus 322 ~~-~~-----~~~~~lRitvgt~een-~~ll~AL~~~~~~ 354 (356)
T COG0079 322 SS-VG-----LLPGYLRITVGTPEEN-DRLLAALREVLKG 354 (356)
T ss_pred CC-CC-----CCCCeEEEEeCCHHHH-HHHHHHHHHHHhc
Confidence 65 22 2468999999996655 7777777766553
No 133
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=98.12 E-value=5.5e-05 Score=56.20 Aligned_cols=85 Identities=15% Similarity=0.139 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCC--Ccc-cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788 12 TISEELRPKREILADALDKAG--MVP-VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY 88 (126)
Q Consensus 12 ~~r~~~~~r~~~l~~~l~~~g--~~~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~ 88 (126)
.+++.++++++.+.+.|.+.+ ..+ ..+.+|.|+|++++. +..++.+.| .++||.+.|+.
T Consensus 290 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~--------------~~~~~~~~l-~~~Gv~v~~~~--- 351 (379)
T TIGR00707 290 RLLENVKEKGDYFKERLEELGKNYPNKEVRGKGLMLGIELEA--------------PCKDIVKKA-LEKGLLVNCAG--- 351 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCCccccCceEEEEEecC--------------cHHHHHHHH-HHCCcEEeeCC---
Confidence 466777788888877776642 111 123468899998863 255788885 58899999841
Q ss_pred cCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhh
Q psy788 89 SDEHKHLGENLIRYCFF--KKDETLREASSILQTWR 122 (126)
Q Consensus 89 ~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~ 122 (126)
.+++|++++ .+++++++++++|.+++
T Consensus 352 --------~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 379 (379)
T TIGR00707 352 --------PKVLRFLPPLIITKEEIDEAVSALEEAI 379 (379)
T ss_pred --------CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 368999975 38899999999998753
No 134
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=98.11 E-value=5.8e-05 Score=57.53 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=70.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 6 DKCYFYTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 6 ~~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
.+.+++++++++.++++++.+.|.++ |+++. ++++|.++.++.. . ++.+++++|..+..+..+|+
T Consensus 346 ~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~~~~~~~v~~~---~---------~~~~~~~~L~~~gi~~~~~~ 411 (447)
T PRK00451 346 GPEGLRELAEQNHQKAHYLAERLAEIGGVELF--DGPFFNEFVVRLP---K---------PAEEVNEALLEKGILGGYDL 411 (447)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcCCEEec--CCCeEEEEEEecC---C---------CHHHHHHHHHhcCCCCCccc
Confidence 35678999999999999999999987 57664 5666665333311 1 25689999864444445777
Q ss_pred CCcccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhh
Q psy788 85 SAFYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWR 122 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~ 122 (126)
+.|+.. ..+++|+++. .+++++++.++.|.+++
T Consensus 412 ~~~~~~-----~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 412 GRYYPE-----LGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred ccccCC-----cCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 877642 2478999997 37888899888887654
No 135
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=98.11 E-value=8.5e-05 Score=55.75 Aligned_cols=100 Identities=9% Similarity=0.016 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788 11 YTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS 89 (126)
Q Consensus 11 ~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~ 89 (126)
.+++++.++.++.+.+.|.++ |+.+..+.++..+++.++.. +..++.+.| .+.||.+.+|+.+..
T Consensus 295 ~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~-------------~~~~~~~~L-~~~gI~v~~g~~~~~ 360 (401)
T PRK10874 295 NQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGV-------------HHSDLVTLL-AEYGIALRAGQHCAQ 360 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCc-------------CHHHHHHHH-HHCCcEEeccccchH
Confidence 345677777788888888877 77665444454666667542 255777775 578999999986642
Q ss_pred Cc-ccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788 90 DE-HKHLGENLIRYCFFK--KDETLREASSILQTWRNK 124 (126)
Q Consensus 90 ~~-~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~ 124 (126)
.- ..-...+++|+|++. ++++++..++.|.+++++
T Consensus 361 ~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~ 398 (401)
T PRK10874 361 PLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALEL 398 (401)
T ss_pred HHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 10 000125799999995 788899999998877653
No 136
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=98.10 E-value=5.8e-05 Score=56.51 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 8 CYFYTISEELRPKREILADALDKAG-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
++++++.+.|+++++.+.+ ++. +.......|+++|++++. ++.+|++.|+ ++||.+.|+.
T Consensus 298 ~~~~~~~~~l~~~l~~l~~---~~~~~~~~v~g~G~~~~i~~~~--------------~~~~~~~~l~-~~GV~~~p~~- 358 (389)
T PRK01278 298 DNVQRMGLYLKQKLEGLVD---RFPDVIEEVRGKGLLLGLKCVV--------------PNRDLVQALR-DEGLLTVGAG- 358 (389)
T ss_pred HHHHHHHHHHHHHHHHHHh---hCCCceeeEecccEEEEEEEec--------------CHHHHHHHHH-HCCeEEeecC-
Confidence 3455566666665554422 222 221223367888988753 2668888876 6699999862
Q ss_pred cccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788 87 FYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK 124 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~ 124 (126)
.+++||+++ .+++++++++++|.+++.+
T Consensus 359 ----------~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~ 388 (389)
T PRK01278 359 ----------DNVVRLLPPLIITEEEIDEALERLERAAES 388 (389)
T ss_pred ----------CCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 368999865 4889999999999988753
No 137
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=98.06 E-value=0.0001 Score=54.92 Aligned_cols=85 Identities=22% Similarity=0.257 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHhC--CCccc--CCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 12 TISEELRPKREILADALDKA--GMVPV--IPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 12 ~~r~~~~~r~~~l~~~l~~~--g~~~~--~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
..++.++++.+.+.+.|.+. ++... ....|+++|++++. +...+...| .++||.+.|+
T Consensus 287 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~--------------~~~~~~~~l-~~~gv~v~~~--- 348 (377)
T PRK02936 287 SFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIECTE--------------EVAPVIEQL-REEGLLVLSA--- 348 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCcEEeEeecceEEEEEecc--------------hHHHHHHHH-HHCCeEEecC---
Confidence 34466667777777777653 23321 12357899999874 244676765 6889999883
Q ss_pred ccCcccCCCCCeEEEEe--eCChhHHHHHHHHHHHhh
Q psy788 88 YSDEHKHLGENLIRYCF--FKKDETLREASSILQTWR 122 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~--~~~~e~i~~~~~~l~~~~ 122 (126)
+.+++|+++ +.+++++++++++|.+++
T Consensus 349 --------g~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 349 --------GPNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred --------CCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 246899996 458999999999998753
No 138
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=98.04 E-value=0.00013 Score=55.49 Aligned_cols=97 Identities=18% Similarity=0.020 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788 11 YTISEELRPKREILADALDKAG-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS 89 (126)
Q Consensus 11 ~~~r~~~~~r~~~l~~~l~~~g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~ 89 (126)
+.+++.-+.-++.+.+...+++ +....+. |+++|+++.......+ +......+...+ .++||.+.|++.|+
T Consensus 320 ~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~-G~~~~i~~~~~~~~~~-----~~~~~~~l~~~~-~~~Gv~i~p~~~f~- 391 (420)
T TIGR00700 320 ERARQIGRLVTDRLTTLKAVDPRIGDVRGL-GAMIAVELVDPGTTEP-----DAGLAERIATAA-HAAGLLLLTCGMFG- 391 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEEeecc-ceEEEEEEecCCCCCc-----cHHHHHHHHHHH-HHCCeEEeccCCCC-
Confidence 3333333333333333333343 3334455 7788888742100000 000133455554 58999999987663
Q ss_pred CcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 90 DEHKHLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 90 ~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
+++||+++. +++++++++++|.++++
T Consensus 392 --------~~lRl~p~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 392 --------NIIRFLPPLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred --------CEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 589999873 88999999999998874
No 139
>PLN02368 alanine transaminase
Probab=98.02 E-value=7e-06 Score=62.19 Aligned_cols=40 Identities=18% Similarity=0.345 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCC
Q psy788 11 YTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQ 50 (126)
Q Consensus 11 ~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~ 50 (126)
+.+++.|++||+++.+.|+++ |+.+..|+||||+|++++-
T Consensus 357 ~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gafy~~~~i~l 397 (407)
T PLN02368 357 KGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIKL 397 (407)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeeeEeccCCCC
Confidence 567899999999999999998 8999999999999998874
No 140
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=98.02 E-value=0.00016 Score=54.57 Aligned_cols=93 Identities=13% Similarity=0.000 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCccc
Q psy788 14 SEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHK 93 (126)
Q Consensus 14 r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~ 93 (126)
+..++++++.+.+.|.+.|+++.++.|.++. +.+... .+..++++.|+.++||.+.|+......
T Consensus 301 ~~~~~~~~~~l~~~L~~~g~~~~~~~~~i~~-v~~~~~------------~~~~~l~~~L~~~~Gi~v~~~~~p~~p--- 364 (406)
T PRK13393 301 RERHQDRVARLRARLDKAGIPHLPNPSHIVP-VMVGDP------------VLCKQISDELLDRYGIYVQPINYPTVP--- 364 (406)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCCCCCeEE-EEeCCH------------HHHHHHHHHHHHhCCEEEEeECCCCCC---
Confidence 5667888899999998777777777777543 444321 035678888764579999997543321
Q ss_pred CCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 94 HLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 94 ~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
.+.+++|++... ++++++..++.|.+++.
T Consensus 365 -~g~~~iRis~~~~~t~edid~l~~~l~~~~~ 395 (406)
T PRK13393 365 -RGTERLRITPSPLHTDADIEHLVQALSEIWA 395 (406)
T ss_pred -CCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 245789999973 88999999999988764
No 141
>PLN00144 acetylornithine transaminase
Probab=97.99 E-value=0.00018 Score=54.03 Aligned_cols=89 Identities=16% Similarity=0.094 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
++++.+++.+ ++.+.+.+.+++.....-..|+++|+++.. +...+...+ .++||.+.|+
T Consensus 290 ~~~~~~g~~l---~~~l~~~~~~~~~~~~vrg~G~~~~l~l~~--------------~~~~~~~~~-~~~Gv~i~~~--- 348 (382)
T PLN00144 290 ASVAKKGEYL---RELLRRKLGGNPHVKEVRGVGLLVGIQLDV--------------PAGPLVDAC-RDSGLLVLTA--- 348 (382)
T ss_pred HHHHHHHHHH---HHHHHHHHhhCCCceeeecCceEEEEEecC--------------ccHHHHHHH-HHCCeEEeec---
Confidence 4566666666 344555555553212222389999999942 245677775 5899999986
Q ss_pred ccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788 88 YSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNK 124 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~ 124 (126)
+ ..+.+|++.+. +++++++++++|.+++.+
T Consensus 349 ~-------~~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~ 380 (382)
T PLN00144 349 G-------KGDVVRLVPPLVISEAELEQAVEILADCLPA 380 (382)
T ss_pred C-------CCCEEEEeCCCccCHHHHHHHHHHHHHHHHh
Confidence 1 13689999985 788999999999988753
No 142
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=97.91 E-value=0.00034 Score=52.50 Aligned_cols=100 Identities=7% Similarity=0.003 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788 11 YTISEELRPKREILADALDKA-GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS 89 (126)
Q Consensus 11 ~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~ 89 (126)
.+++++..+-++.+.+.|.++ |+.+..+.++..+++.++.. +..++...| .++||.+.+|+.+..
T Consensus 292 ~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~-------------~~~~l~~~L-~~~gI~v~~g~~~~~ 357 (398)
T TIGR03392 292 AAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGV-------------HHSDLAALL-AESGIALRAGQHCAQ 357 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCc-------------CHHHHHHHH-HhCCEEEecCccchH
Confidence 355666666777778888776 66655444455666666532 256787776 588999999986542
Q ss_pred Cc-ccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788 90 DE-HKHLGENLIRYCFFK--KDETLREASSILQTWRNK 124 (126)
Q Consensus 90 ~~-~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~ 124 (126)
.- ..-...+++|+|++. +.++++..++.|.+++++
T Consensus 358 ~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~ 395 (398)
T TIGR03392 358 PLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALEL 395 (398)
T ss_pred HHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 10 000024799999984 788899999999887764
No 143
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=97.87 E-value=0.00043 Score=51.30 Aligned_cols=95 Identities=8% Similarity=-0.036 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-----cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788 9 YFYTISEELRPKREILADALDKAGMVPVIPD-----GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP 83 (126)
Q Consensus 9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~-----gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p 83 (126)
++.+.+++++++++.+.+.|.++|+.+..+. +...+| ++... .. +..++.+.| .++||.+.|
T Consensus 262 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~--~~~~~-~~---------~~~~l~~~L-~~~gi~v~~ 328 (368)
T PRK13479 262 GVPARGARYANNQRTLVAGMRALGFEPLLDAEIQSPIIVTFH--APADP-AY---------DFKEFYERL-KEQGFVIYP 328 (368)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCcccCCchhcCceEEEEE--CCCCC-Cc---------CHHHHHHHH-HHCCEEEec
Confidence 4677788999999999999988887653331 122333 22210 01 256788886 478999999
Q ss_pred CCCcccCcccCCCCCeEEEEe-eC-ChhHHHHHHHHHHHhhhc
Q psy788 84 PSAFYSDEHKHLGENLIRYCF-FK-KDETLREASSILQTWRNK 124 (126)
Q Consensus 84 g~~f~~~~~~~~~~~~~Rl~~-~~-~~e~i~~~~~~l~~~~~~ 124 (126)
|..+. .+++|++. +. +.++++..++.|.+++++
T Consensus 329 g~~~~--------~~~iRis~~~~~t~edi~~~l~~L~~~l~~ 363 (368)
T PRK13479 329 GKLTQ--------VDTFRIGCIGDVDAADIRRLVAAIAEALYW 363 (368)
T ss_pred CCCCC--------CCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 85431 46899986 54 888999999999887764
No 144
>PRK07179 hypothetical protein; Provisional
Probab=97.85 E-value=0.0006 Score=51.40 Aligned_cols=95 Identities=14% Similarity=0.171 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788 11 YTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD 90 (126)
Q Consensus 11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~ 90 (126)
...++.++++++.+.+.|.++|+++. +.+ .++++.++.. . +...+.+.| .++||.+. .|...
T Consensus 302 ~~~~~~l~~~~~~l~~~L~~~g~~v~-~~~-~i~~l~~~~~----~--------~~~~~~~~L-~~~GI~~~---~~~~p 363 (407)
T PRK07179 302 DDRRARLHANARFLREGLSELGYNIR-SES-QIIALETGSE----R--------NTEVLRDAL-EERNVFGA---VFCAP 363 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCC-CCC-CEEEEEeCCH----H--------HHHHHHHHH-HHCCceEe---eecCC
Confidence 45788899999999999988877765 444 5677776531 0 244566665 58899733 33321
Q ss_pred cccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788 91 EHKHLGENLIRYCFFK--KDETLREASSILQTWRNK 124 (126)
Q Consensus 91 ~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~ 124 (126)
.. ....+++||+++. +++++++.++.|.+++.+
T Consensus 364 ~~-~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~ 398 (407)
T PRK07179 364 AT-PKNRNLIRLSLNADLTASDLDRVLEVCREARDE 398 (407)
T ss_pred CC-CCCCceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 10 0135799999985 889999999999887653
No 145
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=97.81 E-value=0.00027 Score=52.61 Aligned_cols=101 Identities=12% Similarity=0.033 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-C-CCcccCCC-----cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCe
Q psy788 7 KCYFYTISEELRPKREILADALDK-A-GMVPVIPD-----GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKL 79 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~-~-g~~~~~p~-----gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV 79 (126)
..+++.+..++++.++.+.+.|.+ + ++.+..+. +.+.+|+... +..++...| .++||
T Consensus 250 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l-~~~gI 313 (379)
T TIGR03402 250 TEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYI---------------EGEAILLLL-DMEGI 313 (379)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCC---------------CHHHHHHhh-ccCCE
Confidence 346777888888889999998875 5 55554322 3455555321 255777775 68899
Q ss_pred eEeCCCCcccCccc------------CCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 80 QGIPPSAFYSDEHK------------HLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 80 ~v~pg~~f~~~~~~------------~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
.+.+|+.+...... ....+.+|+|++. +.++++..++.|.++++
T Consensus 314 ~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~ 371 (379)
T TIGR03402 314 CASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIA 371 (379)
T ss_pred EEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 99999877543100 0014789999995 88899999999987765
No 146
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=97.76 E-value=0.00054 Score=52.14 Aligned_cols=95 Identities=17% Similarity=0.126 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHhC----C-CcccCCCcceEEE-EeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 12 TISEELRPKREILADALDKA----G-MVPVIPDGGYFMV-ADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 12 ~~r~~~~~r~~~l~~~l~~~----g-~~~~~p~gg~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
.+.+.++++.+.+.+.|+++ + +....+.|.||.+ +..+... .+ +..-...+...+ .++||.+.|+.
T Consensus 318 ~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~--~~-----~~~~~~~l~~~~-~~~Gv~i~~~~ 389 (421)
T PRK06777 318 KLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEFNDPQTG--KP-----SPEFTRQYQRQA-LEEGLLLLSCG 389 (421)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCceEEEEEEEecCccC--Cc-----cHHHHHHHHHHH-HhCCeEEeecC
Confidence 46667777777777777664 2 3346788888864 3222111 00 000122344443 47999999986
Q ss_pred CcccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788 86 AFYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN 123 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~ 123 (126)
.|+ +++||+.. .+++++++++++|.+++.
T Consensus 390 ~~g---------~~lr~~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 390 VHG---------NVIRFLYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred CCC---------CEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 653 58999985 489999999999988764
No 147
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=97.71 E-value=0.0012 Score=50.79 Aligned_cols=98 Identities=16% Similarity=0.070 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 8 CYFYTISEELRPKREILADALDKAG-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
++++.+.+.+.++.+.+.+ +++ +....+.|+|+.|.-........+ +......+.+.+ .++||.+.|+..
T Consensus 342 ~~~~~~g~~l~~~l~~l~~---~~~~~~~vrg~G~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~-~~~Gvlv~~~~~ 412 (451)
T PRK06918 342 DRAIELGKVVMNRFEEMKN---KYNCIGDVRGLGAMCAFELVQDRKTKEP-----DKTLTANICKEA-NKRGLLLLSAGT 412 (451)
T ss_pred HHHHHHHHHHHHHHHHHHh---hCCCceeeccceeEEEEEEccCCCcCCC-----cHHHHHHHHHHH-HHCCeEEeecCC
Confidence 3445555555444443322 232 222457789888776532100000 000134566654 589999999865
Q ss_pred cccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788 87 FYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN 123 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~ 123 (126)
|+ +++||+++ .++++|++++++|.++++
T Consensus 413 ~~---------~~lrl~p~l~~t~~~id~~l~~l~~~l~ 442 (451)
T PRK06918 413 YG---------NVIRVLMPLVITDEQLEEGLTIIEESLQ 442 (451)
T ss_pred CC---------CEEEEECCCccCHHHHHHHHHHHHHHHH
Confidence 52 57999986 378999999999998875
No 148
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=97.71 E-value=0.001 Score=49.96 Aligned_cols=99 Identities=11% Similarity=0.095 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCcccCCC-----cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788 10 FYTISEELRPKREILADALDKA-GMVPVIPD-----GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP 83 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~-----gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p 83 (126)
++.++++..+.++.+.+.|.++ ++++..|. +++.. +.++.. +..++...| .+.||.+.+
T Consensus 293 ~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~-~~~~~~-------------~~~~~~~~L-~~~gI~v~~ 357 (403)
T TIGR01979 293 LENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIIS-FNVEGV-------------HPHDVGTIL-DEEGIAVRS 357 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEE-EEeCCc-------------CHHHHHHHH-hhCCEEEcc
Confidence 3456777778888888888776 67765543 66544 456532 245676664 688999998
Q ss_pred CCCcccCc-ccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 84 PSAFYSDE-HKHLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 84 g~~f~~~~-~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
|+...... ......+++|+|++. +.++++..++.|.++++
T Consensus 358 g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~ 400 (403)
T TIGR01979 358 GHHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRK 400 (403)
T ss_pred hhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHH
Confidence 87432100 000125789999984 77888888888876543
No 149
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=97.68 E-value=0.00028 Score=52.14 Aligned_cols=93 Identities=16% Similarity=0.141 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhC-CCcc--------------cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHH
Q psy788 8 CYFYTISEELRPKREILADALDKA-GMVP--------------VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKW 72 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~--------------~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (126)
+.+.--++.+++|...|.+++.+- -|+. ..| +.-|.|+++...+ +.+....
T Consensus 255 ~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~p-sPafAWlkCe~ee-------------d~DC~~~ 320 (363)
T PF04864_consen 255 DIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREP-SPAFAWLKCEREE-------------DEDCYAV 320 (363)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE----SEEEEEESSCG-------------GSSHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCC-CCCeEEEecCCcc-------------cccHHHH
Confidence 456667788999999999999753 1222 123 3449999998632 2233334
Q ss_pred HHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHh
Q psy788 73 MTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW 121 (126)
Q Consensus 73 l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~ 121 (126)
++++||.-..|..|+.+ +.|+|+|.-..++.++.-++||..+
T Consensus 321 -l~~~~I~tr~G~~fga~------~ryVRlSml~~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 321 -LREAKIITRSGVLFGAD------SRYVRLSMLKRDDDFDQLLERLSKL 362 (363)
T ss_dssp -HHCTTEEEEEGGGGTS-------TTEEEEESSS-HHHHHHHHHHHHCC
T ss_pred -HHhCCcccCCCCccCCC------CCeEEEeccCCHHHHHHHHHHHHhh
Confidence 46999999999999974 7899999999999999999999764
No 150
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=97.68 E-value=0.0013 Score=49.33 Aligned_cols=86 Identities=16% Similarity=0.214 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHhC----CC-cccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788 15 EELRPKREILADALDKA----GM-VPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS 89 (126)
Q Consensus 15 ~~~~~r~~~l~~~l~~~----g~-~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~ 89 (126)
+..+++.+.+.+.|.+. ++ ....| .|+++|+.++.... . +..+++..|. ++||.+.|+
T Consensus 302 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-~g~~~~v~~~~~~~-~---------~~~~~~~~l~-~~Gv~v~~~----- 364 (400)
T PTZ00125 302 ENAQRLGEVFRDGLKELLKKSPWVKEIRG-KGLLNAIVFDHSDG-V---------NAWDLCLKLK-ENGLLAKPT----- 364 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEec-ccEEEEEEEccCcc-h---------HHHHHHHHHH-HCCeEEeec-----
Confidence 33444445555555442 32 22334 57788888864210 1 3567888875 789999884
Q ss_pred CcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788 90 DEHKHLGENLIRYCFF--KKDETLREASSILQTWRN 123 (126)
Q Consensus 90 ~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~ 123 (126)
..+++||+.. .+++++++++++|.++++
T Consensus 365 ------~~~~lRi~~~~~~~~~~i~~~l~~l~~~l~ 394 (400)
T PTZ00125 365 ------HDNIIRFAPPLVITKEQLDQALEIIKKVLK 394 (400)
T ss_pred ------CCCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 1468999954 588999999999988776
No 151
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=97.67 E-value=0.0013 Score=50.01 Aligned_cols=99 Identities=15% Similarity=0.071 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh-CCCcccCCCc-ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 8 CYFYTISEELRPKREILADALDK-AGMVPVIPDG-GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~-~g~~~~~p~g-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
+++++++ .+.++....++.|.+ ++. +..+.| |+++|++++..... ..+......+...++ ++||.+.+.
T Consensus 318 ~~~~~~~-~~g~~l~~~l~~l~~~~p~-v~~vrG~Gl~~~ie~~~~~~~-----~~~~~~~~~l~~~~~-~~Gv~i~~~- 388 (421)
T PRK09792 318 SLCERAN-QLGQRLKNTLIDAKESVPA-IAAVRGLGSMIAAEFNDPQTG-----EPSAAIAQKIQQRAL-AQGLLLLTC- 388 (421)
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHhCCC-cceecccceEEEEEecCCccC-----CcchHHHHHHHHHHH-HCCcEEeec-
Confidence 5667777 445555544555543 343 457888 99999999742100 000012346777754 789998431
Q ss_pred CcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 86 AFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
+ ...+.+||..+. +++++++++++|.++++
T Consensus 389 --g------~~~~~irl~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 389 --G------AYGNVIRFLYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred --C------CCCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence 1 135789998774 88999999999988774
No 152
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=97.64 E-value=0.0011 Score=49.75 Aligned_cols=87 Identities=11% Similarity=0.029 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcc--cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788 12 TISEELRPKREILADALDKAGMVP--VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS 89 (126)
Q Consensus 12 ~~r~~~~~r~~~l~~~l~~~g~~~--~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~ 89 (126)
..++.+++.++.+.+.|++.+..+ .....|+++|++++.. ....+.+.+ .++||.+.|.
T Consensus 303 ~~~~~~~~~~~~l~~~L~~~~~~~~~~v~g~g~~~~i~~~~~-------------~~~~~~~~l-~~~Gv~~~~~----- 363 (398)
T PRK03244 303 GLLENAERLGEQLRAGIEALGHPLVDHVRGRGLLLGIVLTAP-------------VAKAVEAAA-REAGFLVNAV----- 363 (398)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCceeeEeeccEEEEEEEecc-------------HHHHHHHHH-HHCCeEEeec-----
Confidence 345666677777888887754321 2334788999999641 255677876 4789999882
Q ss_pred CcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 90 DEHKHLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 90 ~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
..+.+|++++. ++++++.+++.|.++++
T Consensus 364 ------~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~ 393 (398)
T PRK03244 364 ------APDVIRLAPPLIITDAQVDAFVAALPAILD 393 (398)
T ss_pred ------CCCEEEEECCCcCCHHHHHHHHHHHHHHHH
Confidence 13679999764 78899999999998876
No 153
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=97.64 E-value=0.00092 Score=49.90 Aligned_cols=103 Identities=16% Similarity=0.127 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCc---ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788 7 KCYFYTISEELRPKREILADALDKA-GMVPVIPDG---GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI 82 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~g---g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~ 82 (126)
.++++.+++++++.++.+.+.|.++ ++.+..|.. +-++.+.++.. +..++...| .++||.+.
T Consensus 254 ~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~L-~~~gI~v~ 319 (382)
T TIGR03403 254 NEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGV-------------EGEAMLWDL-NKAGIAAS 319 (382)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCC-------------CHHHHHHhh-ccCCEEEE
Confidence 3467778889999999999999876 677655431 22444555531 255676775 58899999
Q ss_pred CCCCcccCcc-c-----------CCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 83 PPSAFYSDEH-K-----------HLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 83 pg~~f~~~~~-~-----------~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
.|+......- + ....+.+|+|+.. +.++++..++.|.++++
T Consensus 320 ~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~ 374 (382)
T TIGR03403 320 TGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQ 374 (382)
T ss_pred chhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 8875431100 0 0013679999995 88899999999987765
No 154
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=97.62 E-value=0.0014 Score=49.40 Aligned_cols=83 Identities=16% Similarity=0.160 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHhCC---CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788 13 ISEELRPKREILADALDKAG---MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS 89 (126)
Q Consensus 13 ~r~~~~~r~~~l~~~l~~~g---~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~ 89 (126)
+.+.++++++.+.+.|++.+ +....+. |.|++++++. ++.++++.|. ++||.+.|.
T Consensus 308 l~~~~~~~~~~l~~~L~~l~~~~i~~~~~~-g~~~~~~~~~--------------~~~~~~~~l~-~~Gv~~~~~----- 366 (396)
T PRK04073 308 LPERSLELGEYFKEQLKEIDNPMIKEVRGR-GLFIGVELNE--------------PARPYCEALK-EEGLLCKET----- 366 (396)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcccceecc-eEEEEEEecc--------------hHHHHHHHHH-HCCeEEecC-----
Confidence 44666777888888887753 3333445 5678888863 2567888864 789998762
Q ss_pred CcccCCCCCeEEEEe--eCChhHHHHHHHHHHHhh
Q psy788 90 DEHKHLGENLIRYCF--FKKDETLREASSILQTWR 122 (126)
Q Consensus 90 ~~~~~~~~~~~Rl~~--~~~~e~i~~~~~~l~~~~ 122 (126)
+.+++|++. ..+++++++++++|.+++
T Consensus 367 ------~~~~iRi~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 367 ------HETVIRFAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred ------CCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence 146899995 458899999999998765
No 155
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=97.62 E-value=0.002 Score=48.43 Aligned_cols=87 Identities=11% Similarity=-0.007 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCc---ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788 13 ISEELRPKREILADALDKAGMV---PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS 89 (126)
Q Consensus 13 ~r~~~~~r~~~l~~~l~~~g~~---~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~ 89 (126)
+.+.++++.+.+.+.|++.+.. ...+.|.|+.|.-.+... +..++++.|. +.||.+.+.
T Consensus 309 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~g~~~~i~~~~~~~------------~~~~~~~~L~-~~GV~v~~~----- 370 (401)
T PRK00854 309 MIENAAEMGAYFLEGLRSIRSNIVREVRGRGLMLAVELEPEAG------------GARQYCEALK-ERGLLAKDT----- 370 (401)
T ss_pred HHHHHHHHHHHHHHHHHhhccCceEEEeccceEEEEEEecCch------------hHHHHHHHHH-HCCeEEecC-----
Confidence 6788888889999999876422 124556655543323210 3567888875 679998641
Q ss_pred CcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788 90 DEHKHLGENLIRYCFF--KKDETLREASSILQTWRN 123 (126)
Q Consensus 90 ~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~ 123 (126)
+.+++|++.. .+++++++++++|.+++.
T Consensus 371 ------~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 371 ------HDHTIRLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred ------CCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence 2468999974 488999999999998775
No 156
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=97.53 E-value=0.0012 Score=49.28 Aligned_cols=100 Identities=8% Similarity=0.097 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCcc--cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCee-EeC
Q psy788 7 KCYFYTISEELRPKREILADALDKAGMVP--VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQ-GIP 83 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~--~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~-v~p 83 (126)
.+++.+.++.++.+ +.+.+.|.+.|+++ ..|..+.|++++++...... ..+..+...+.+.| .++||. +.|
T Consensus 264 ~~~l~~~~~~~~~~-~~l~~~L~~~g~~~~~~~~s~t~~v~~~~~~~~~~~----~~~~~~~~~~~~~L-~e~GI~~ir~ 337 (370)
T TIGR02539 264 VERVKRWDEEVKKT-RWFVAELEDIGFIQLGQKPKEHDLVKFETPGFHEIA----QKHKRRGYFLYEEL-KKRGIHGIRS 337 (370)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhCCcEEEccCCCcCceEEEECCchhHHh----hhhccccHHHHHHH-HhCCCccccC
Confidence 34555556666665 47899998888775 34566778888876320000 00000234577775 588996 332
Q ss_pred CCCcccCcccCCCCCeEEEEee-CChhHHHHHHHHHHHhhh
Q psy788 84 PSAFYSDEHKHLGENLIRYCFF-KKDETLREASSILQTWRN 123 (126)
Q Consensus 84 g~~f~~~~~~~~~~~~~Rl~~~-~~~e~i~~~~~~l~~~~~ 123 (126)
+ .++++|+++. .+++++++.++.|.++++
T Consensus 338 ----~-------~~~~iRis~~~~t~e~i~~l~~~L~~~~~ 367 (370)
T TIGR02539 338 ----G-------QTKYFKLSVYGLTKEQVEYVVDSFEEIVE 367 (370)
T ss_pred ----C-------cceEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 2 2469999973 388899999999988765
No 157
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=97.47 E-value=0.0021 Score=48.24 Aligned_cols=95 Identities=20% Similarity=0.130 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 12 TISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 12 ~~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
.+.+.++++.+.+.+.|++. +.....+..|.++|+.++.... . ...+......++..|. ++||.+.|++
T Consensus 313 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~~~~~~~~~~~~l~-~~gv~v~~~~-- 385 (413)
T cd00610 313 GLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRA---T-KPPDKELAAKIIKAAL-ERGLLLRPSG-- 385 (413)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCC---c-CCcchHHHHHHHHHHH-HCCeEEeecC--
Confidence 35566666677777766654 2222223456788888864210 0 0000013557888764 7899999974
Q ss_pred ccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhh
Q psy788 88 YSDEHKHLGENLIRYCFFK--KDETLREASSILQTWR 122 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~ 122 (126)
.+++|++++. +++++++++++|.+++
T Consensus 386 ---------~~~lR~~~~~~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 386 ---------GNVIRLLPPLIITEEEIDEGLDALDEAL 413 (413)
T ss_pred ---------CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 2568997764 7889999999998753
No 158
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=97.46 E-value=0.0053 Score=45.36 Aligned_cols=89 Identities=11% Similarity=0.079 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCc-ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 9 YFYTISEELRPKREILADALDKAGMV-PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 9 ~l~~~r~~~~~r~~~l~~~l~~~g~~-~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
.++++++...+.++.+.+.|.+.|++ +..|..+ ++.++++ +..++.+.|. ++||.+.++.
T Consensus 280 g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~v~~~~~---------------~~~~v~~~L~-~~gi~v~~~~-- 340 (371)
T PRK13520 280 GYRKVVERCMENTRWLAEELKERGFEPVIEPVLN-IVAFDDP---------------NPDEVREKLR-ERGWRVSVTR-- 340 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEecCCCce-EEEEecC---------------CHHHHHHHHH-HCCceeccCC--
Confidence 45678888888889999999877877 5666666 4445554 2457778764 7799887632
Q ss_pred ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788 88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK 124 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~ 124 (126)
..+++|+++. .++++++..++.|.+.+++
T Consensus 341 --------~~~~iRis~~~~~t~edi~~~~~~l~~~~~~ 371 (371)
T PRK13520 341 --------CPEALRIVCMPHVTREHIENFLEDLKEVKKR 371 (371)
T ss_pred --------CCCEEEEEEECCCCHHHHHHHHHHHHHHhhC
Confidence 2468999987 3788999999999877653
No 159
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=97.46 E-value=0.0023 Score=48.37 Aligned_cols=90 Identities=7% Similarity=0.031 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCC--Cc-c-cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 12 TISEELRPKREILADALDKAG--MV-P-VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 12 ~~r~~~~~r~~~l~~~l~~~g--~~-~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
.+++.++++.+.+.+.|++.+ .. + .....|+++|++++... . .....+...+ .++||.+.|.
T Consensus 303 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~---~-------~~~~~~~~~l-~~~Gv~v~~~--- 368 (406)
T PRK12381 303 EMLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEY---A-------GKAKQISQEA-AKAGVMVLIA--- 368 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCch---h-------hHHHHHHHHH-HHCCcEEeeC---
Confidence 578888899999999888752 22 2 23356889999986420 0 0245676765 5889999753
Q ss_pred ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788 88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN 123 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~ 123 (126)
+ ++.+|++++ .+++++++++++|.++++
T Consensus 369 g--------~~~lRl~p~~~~t~~~i~~~~~~l~~~l~ 398 (406)
T PRK12381 369 G--------PNVVRFAPALNISEEEITTGLDRFARACE 398 (406)
T ss_pred C--------CCEEEEeCCccCCHHHHHHHHHHHHHHHH
Confidence 1 368999887 488999999999988775
No 160
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=97.45 E-value=0.0045 Score=46.76 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 8 CYFYTISEELRPKREILADALDKAGMVPVI-PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~-p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
.+++..+++++++++.+.+.|++.|+++.. +..+.++|+.++..+ + +..++.+.| .+.||.+.++..
T Consensus 279 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~~~--~---------~~~~~~~~L-~~~GI~v~~~~~ 346 (416)
T PRK00011 279 PEFKEYAQQVVKNAKALAEALAERGFRVVSGGTDNHLVLVDLRSKG--L---------TGKEAEAAL-EEANITVNKNAV 346 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCeeeecCCCCeEEEEeCcccC--C---------CHHHHHHHH-HHcCcEEccCcC
Confidence 356788899999999999999888877643 122489999986421 1 245676765 688999975432
Q ss_pred cccCcccCCCCCeEEEEe------eCChhHHHHHHHHHHHhhhc
Q psy788 87 FYSDEHKHLGENLIRYCF------FKKDETLREASSILQTWRNK 124 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~------~~~~e~i~~~~~~l~~~~~~ 124 (126)
...... ...+..+|++. +.+.++++.-++.|.+++++
T Consensus 347 p~~~~~-~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 347 PFDPRS-PFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred CCCCCC-CCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence 111100 01345789854 22467788888888776553
No 161
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=97.36 E-value=0.0041 Score=46.07 Aligned_cols=94 Identities=10% Similarity=0.035 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCcccCC---CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 10 FYTISEELRPKREILADALDKA-GMVPVIP---DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p---~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
++.+++..++.++.+.+.|+++ ++++..+ .++ ++++.++.. +..++.+.| .++||.+.+|.
T Consensus 273 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-------------~~~~i~~~l-~~~gi~i~~g~ 337 (373)
T cd06453 273 MEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAG-VVSFNLEGI-------------HPHDVATIL-DQYGIAVRAGH 337 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCC-eEEEEECCc-------------CHHHHHHHH-HHCCEEeccCc
Confidence 4567777788888888988877 5666432 344 556666531 356787876 57899999887
Q ss_pred CcccCc-ccCCCCCeEEEEeeC--ChhHHHHHHHHH
Q psy788 86 AFYSDE-HKHLGENLIRYCFFK--KDETLREASSIL 118 (126)
Q Consensus 86 ~f~~~~-~~~~~~~~~Rl~~~~--~~e~i~~~~~~l 118 (126)
.+.... ......+++|++++. +.+++++.++.|
T Consensus 338 ~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 338 HCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred cchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 543210 000125799999995 788888877653
No 162
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=97.36 E-value=0.0036 Score=45.83 Aligned_cols=95 Identities=8% Similarity=0.097 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhC-CCcc-cCCCcceEEEEeeCCc-ccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 8 CYFYTISEELRPKREILADALDKA-GMVP-VIPDGGYFMVADWTQL-RPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~-~~p~gg~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
..++.+++++.+.++.+.+.|.+. ++.+ .+|++++.+|. ++.. .... +..++.+.| .+.|+.+.++
T Consensus 244 ~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~-~~~~~~~~~---------~~~~i~~~L-~~~g~~~~~~ 312 (345)
T cd06450 244 DGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFR-LKPSVKLDE---------LNYDLSDRL-NERGGWHVPA 312 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEE-ECCcchhhH---------HHHHHHHHH-HhcCCEEEEe
Confidence 456778888888889999999877 6665 45788876665 3321 0001 245788886 4777777776
Q ss_pred CCcccCcccCCCCCeEEEEeeC---ChhHHHHHHHHHHH
Q psy788 85 SAFYSDEHKHLGENLIRYCFFK---KDETLREASSILQT 120 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~~---~~e~i~~~~~~l~~ 120 (126)
..|. .+.++|++++. +.++++..++.|.+
T Consensus 313 ~~~~-------~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 313 TTLG-------GPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred eEEC-------CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 5443 25789999984 66888888887764
No 163
>PRK02948 cysteine desulfurase; Provisional
Probab=97.31 E-value=0.0016 Score=48.48 Aligned_cols=103 Identities=10% Similarity=0.032 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEE-----eeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788 8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVA-----DWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI 82 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~ 82 (126)
+++...++.+++.++.+.+.|++.++.+..+...-+.+. .++. . +..++...| .++||.+.
T Consensus 253 ~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~i~~~~~~~----~---------~~~~~~~~l-~~~gI~v~ 318 (381)
T PRK02948 253 KNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIKG----I---------EGQYTMLEC-NRRGIAIS 318 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCccCcCCEEEEEeCC----C---------CHHHHHHhc-ccCCEEEE
Confidence 567888999999999999999887765443221112111 1121 1 245666665 58899999
Q ss_pred CCCC----cccCc--------ccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788 83 PPSA----FYSDE--------HKHLGENLIRYCFFK--KDETLREASSILQTWRNK 124 (126)
Q Consensus 83 pg~~----f~~~~--------~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~ 124 (126)
+|+. |.... ......+++|+|++. ++++++..++.|.+++++
T Consensus 319 ~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 374 (381)
T PRK02948 319 TGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQ 374 (381)
T ss_pred chHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9874 21000 000124789999984 788899999988877653
No 164
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=97.30 E-value=0.005 Score=46.81 Aligned_cols=92 Identities=14% Similarity=0.054 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
++++++.+.++++.+.+.+.+. ++....+..|+++|++++... ....+...+ .++||.+.|...
T Consensus 318 ~~~~~~g~~l~~~l~~l~~~~~--~~~~~vrg~Gl~~~l~l~~~~------------~~~~~~~~~-~~~Gv~v~~~~~- 381 (412)
T TIGR02407 318 KAVQRKSEIIQERLDRIVAEYP--ELIKQVRGRGLMQGIECGDGD------------LAGKIAKAA-FENGLIIETSGP- 381 (412)
T ss_pred HHHHHHHHHHHHHHHHHHhhCC--CceEeeecceeEEEEEecChH------------HHHHHHHHH-HHCCCEEeccCC-
Confidence 4455555555555544333321 133456678999999997521 245677775 488999987421
Q ss_pred ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788 88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN 123 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~ 123 (126)
..+.+|++-. .++++++++++.|.+++.
T Consensus 382 --------~~~~lr~~p~l~~t~~~i~~~~~~l~~~l~ 411 (412)
T TIGR02407 382 --------NDEVIKLLPPLTIDEETLQQGLDILEQAVE 411 (412)
T ss_pred --------CCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 2356888766 388999999999988764
No 165
>PRK07505 hypothetical protein; Provisional
Probab=97.25 E-value=0.0078 Score=45.38 Aligned_cols=55 Identities=16% Similarity=0.162 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhcC
Q psy788 66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNKN 125 (126)
Q Consensus 66 ~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~~ 125 (126)
..++.+.|. +.||.+.|+..+... .+.+++|++++. ++++++++++.|.+++++.
T Consensus 344 ~~~~~~~l~-~~Gi~v~~~~~p~~~----~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~~ 400 (402)
T PRK07505 344 AIKAAKQLL-DRGFYTSPVFFPVVA----KGRAGLRIMFRASHTNDEIKRLCSLLKEILDEG 400 (402)
T ss_pred HHHHHHHHH-HCCCeEeeecCCCCC----CCCceEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 557888875 889999997433221 134799999983 8899999999999888754
No 166
>PLN02409 serine--glyoxylate aminotransaminase
Probab=97.21 E-value=0.016 Score=43.86 Aligned_cols=96 Identities=9% Similarity=-0.070 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccCCC----cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 9 YFYTISEELRPKREILADALDKAGMVPVIPD----GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~----gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
.++++++++++..+.+.+.|.+.|+++..|+ .+...|+.++.. . +..++...|..+.|+.+.+|
T Consensus 270 G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~p~~---~---------~~~~l~~~l~~~~~i~i~~G 337 (401)
T PLN02409 270 GLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVVPEG---I---------DSAEIVKNAWKKYNLSLGLG 337 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEEEeCCCC---C---------CHHHHHHHHHHhCCEEEEcC
Confidence 4678889999999999999987787765442 223456666642 1 35678888877889999998
Q ss_pred CCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 85 SAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
..-. ....||++.-. +.+.+...++.|..+++
T Consensus 338 ~~~~-------~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~ 371 (401)
T PLN02409 338 LNKV-------AGKVFRIGHLGNVNELQLLGALAGVEMVLK 371 (401)
T ss_pred CCcc-------cCCEEEEcCCCCCCHHHHHHHHHHHHHHHH
Confidence 6321 24789998864 77888888888887765
No 167
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=97.19 E-value=0.0092 Score=44.64 Aligned_cols=94 Identities=10% Similarity=-0.010 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCcccCC-----CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788 9 YFYTISEELRPKREILADALDKA-GMVPVIP-----DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI 82 (126)
Q Consensus 9 ~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p-----~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~ 82 (126)
++++++++..+.++.+.+.|.+. ++++..| .++ ++.+.++.. +..++.++| .++||.+.
T Consensus 291 ~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------------~~~~l~~~L-~~~gI~v~ 355 (397)
T TIGR01976 291 SFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVP-TVSFTVHGL-------------PPQRVVRRL-ADQGIDAW 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCc-eEEEEeCCc-------------CHHHHHHHH-HHCCeEEE
Confidence 35667777777788888888776 4766443 455 455555431 255788886 58899999
Q ss_pred CCCCcccCc----ccCCCCCeEEEEeeC--ChhHHHHHHHH
Q psy788 83 PPSAFYSDE----HKHLGENLIRYCFFK--KDETLREASSI 117 (126)
Q Consensus 83 pg~~f~~~~----~~~~~~~~~Rl~~~~--~~e~i~~~~~~ 117 (126)
.|+.+.... .-....+++|+|+.. ++++++..++.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~ 396 (397)
T TIGR01976 356 AGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEA 396 (397)
T ss_pred eCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHh
Confidence 987664200 000124689999974 66777776654
No 168
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=97.19 E-value=0.012 Score=44.40 Aligned_cols=97 Identities=10% Similarity=0.015 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCcccCCC--cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 11 YTISEELRPKREILADALDKA-GMVPVIPD--GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 11 ~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~--gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
+.++++.++..+.+.+.|.++ ++++..|. +|+.. +.++.. +..++...| .+.||.+.+|+..
T Consensus 300 ~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~-~~~~~~-------------~~~~~~~~L-~~~gI~v~~g~~c 364 (406)
T PRK09295 300 NNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIA-FNLGKH-------------HAYDVGSFL-DNYGIAVRTGHHC 364 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEE-EEECCc-------------CHHHHHHHH-HhCCeEEeccccc
Confidence 456667777777888888776 66665443 55443 335431 255677765 6889999998744
Q ss_pred ccCc-ccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhh
Q psy788 88 YSDE-HKHLGENLIRYCFFK--KDETLREASSILQTWR 122 (126)
Q Consensus 88 ~~~~-~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~ 122 (126)
.... .....++++|+|++. +.++++..++.|.++.
T Consensus 365 ~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~ 402 (406)
T PRK09295 365 AMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIH 402 (406)
T ss_pred hHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 3210 000124689999995 7788888888887653
No 169
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=97.15 E-value=0.0068 Score=45.30 Aligned_cols=89 Identities=12% Similarity=0.111 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCc-c-cCCCcceEEEEeeCCccc--ccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 12 TISEELRPKREILADALDKA-GMV-P-VIPDGGYFMVADWTQLRP--MLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 12 ~~r~~~~~r~~~l~~~l~~~-g~~-~-~~p~gg~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
...+.++++++.+.+.|+++ ++. + .+|.||||.| +++.... .+- +..+...++..|-....+.+.|++.
T Consensus 249 ~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf-~~~~~~~~~~~~-----~~l~~~~~~~slg~~~sl~~~p~~~ 322 (366)
T PRK08247 249 LRMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSF-RLQDEEWVNPFL-----KSLKLITFAESLGGVESFITYPATQ 322 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEE-EECCHHHHHHHH-----HcCCcceEccCCCCCceEEECCccc
Confidence 33446799999999999988 555 4 4449999998 5642100 000 0000112222222345677889987
Q ss_pred cccCc--c----cCCCCCeEEEEeeC
Q psy788 87 FYSDE--H----KHLGENLIRYCFFK 106 (126)
Q Consensus 87 f~~~~--~----~~~~~~~~Rl~~~~ 106 (126)
+...- + ....++.+||+++.
T Consensus 323 ~~~~~~~~~r~~~gi~~~~~R~svGl 348 (366)
T PRK08247 323 THADIPEEIRIANGVCNRLLRFSVGI 348 (366)
T ss_pred ccccCCHHHHHhcCCCCCeEEEEecc
Confidence 64321 0 01235799999997
No 170
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=97.11 E-value=0.0083 Score=44.84 Aligned_cols=91 Identities=18% Similarity=0.113 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceE--EEEeeCCc-ccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYF--MVADWTQL-RPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP 83 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~--~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p 83 (126)
+..+++++++++++++++.+.|.+++... .+.+.++ ++++++.. + . ++.+++..|. +.||.+.+
T Consensus 303 ~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~v~~~~~~~~~--~---------~~~~~~~~L~-~~gi~~~~ 369 (398)
T cd00613 303 PEGLKEIAERAHLNANYLAKRLKEVGGVL-PFNGPFFHEFVLRLPPLYG--I---------RAEDLAKALI-DGGFHAPT 369 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCeeEEEEEEcCCcch--H---------HHHHHHHhhh-hcCccccc
Confidence 34677889999999999999998875333 3445555 46666531 1 1 3567888865 77887543
Q ss_pred CCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHH
Q psy788 84 PSAFYSDEHKHLGENLIRYCFFK--KDETLREASSIL 118 (126)
Q Consensus 84 g~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l 118 (126)
.. .. ..+.+|++... ++++++..++.|
T Consensus 370 ~~---~~-----~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 370 MY---LP-----VDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred cc---cC-----CCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 21 11 35789999974 788888887653
No 171
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=97.10 E-value=0.015 Score=43.07 Aligned_cols=97 Identities=11% Similarity=0.045 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCcccCC----CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 11 YTISEELRPKREILADALDKA-GMVPVIP----DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 11 ~~~r~~~~~r~~~l~~~l~~~-g~~~~~p----~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
+.++++.++..+.+.+.|.+. ++++..| ..+-.+++.++.. +..++...|....||.+.+|.
T Consensus 269 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~~~~~L~~~~gi~v~~g~ 335 (376)
T TIGR01977 269 ANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGI-------------DSEEVADILDEKFDIATRTGL 335 (376)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCC-------------CHHHHHHHHhccCCEEEEccc
Confidence 455667777777778888765 5665432 1233566666532 356788886533499999987
Q ss_pred CcccCcc---cCCCCCeEEEEeeC--ChhHHHHHHHHHHH
Q psy788 86 AFYSDEH---KHLGENLIRYCFFK--KDETLREASSILQT 120 (126)
Q Consensus 86 ~f~~~~~---~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~ 120 (126)
.+..... .....+.+|+++.. ++++++..++.|.+
T Consensus 336 ~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 336 HCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred ccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 6642100 00135789999985 78889998888864
No 172
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=97.00 E-value=0.03 Score=41.41 Aligned_cols=86 Identities=14% Similarity=0.094 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCc-ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 8 CYFYTISEELRPKREILADALDKAGMV-PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~-~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
..+..++++..+.++.+.+.|+++|+. +..|..+ ++.+.++. ..++.+.| .+.||.+.++.
T Consensus 284 ~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~v~~~~~~---------------~~~v~~~L-~~~gi~v~~~~- 345 (373)
T TIGR03812 284 EGYRKIVAECMENTRYLVEELKKIGFEPVIEPVLN-IVAFEVDD---------------PEEVRKKL-RDRGWYVSVTR- 345 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeEEcCCCce-EEEEEeCC---------------HHHHHHHH-HHCCceeccCC-
Confidence 456677888999999999999887654 4445544 44455442 34677776 47799987641
Q ss_pred cccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHH
Q psy788 87 FYSDEHKHLGENLIRYCFFK--KDETLREASSILQT 120 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~ 120 (126)
.++++|+++.. ++++++..++.|.+
T Consensus 346 ---------~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 346 ---------CPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred ---------CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 24689999983 77888888888764
No 173
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=96.99 E-value=0.018 Score=43.72 Aligned_cols=100 Identities=9% Similarity=-0.030 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCcccCC-------CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhC-Ce
Q psy788 9 YFYTISEELRPKREILADALDKA-GMVPVIP-------DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNV-KL 79 (126)
Q Consensus 9 ~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p-------~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-gV 79 (126)
.++.++++..+-++.+.+.|.++ |+++..| .++ ++.+.++.. +..++.+.|. ++ ||
T Consensus 306 g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~-~v~~~~~~~-------------~~~~v~~~L~-~~~gI 370 (424)
T PLN02855 306 GMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAA-LCAFNVEGI-------------HPTDLSTFLD-QQHGV 370 (424)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCccc-EEEEEECCc-------------CHHHHHHHhc-ccCCE
Confidence 45667777788888888888776 6666433 134 444566542 2557778764 55 99
Q ss_pred eEeCCCCcccCc-ccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 80 QGIPPSAFYSDE-HKHLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 80 ~v~pg~~f~~~~-~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
.+..|+.-.... .....++++|+|++. +.++++..++.|.++++
T Consensus 371 ~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~ 417 (424)
T PLN02855 371 AIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIA 417 (424)
T ss_pred EEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHH
Confidence 999887432100 000124689999984 78889999999888765
No 174
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=96.81 E-value=0.028 Score=42.68 Aligned_cols=104 Identities=14% Similarity=0.078 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCcceEE-EEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 8 CYFYTISEELRPKREILADALDKAGMVPV-IPDGGYFM-VADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~-~p~gg~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
.+++++++.++..++.+.+.++++++... .+.|+|+. ++..+... +.......+......++..|+ ++||.+.++
T Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~- 393 (423)
T TIGR00713 317 GVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVT-NYADAKKSDTELFAKFFHEML-DKGVFLPPS- 393 (423)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccEEEEEEecCCCC-ChhhhhcccHHHHHHHHHHHH-HCCeEEecC-
Confidence 47888899999999999888888765543 34455433 23322110 000000000001235777765 789997653
Q ss_pred CcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 86 AFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
.| +.+|++.+.+++++++++++|.+++++
T Consensus 394 ~~----------~~~~l~~~~t~~~i~~~~~~l~~~l~~ 422 (423)
T TIGR00713 394 QF----------EACFLSAAHTEEDIENTIEAAEEVFAE 422 (423)
T ss_pred Cc----------cceeeECCCCHHHHHHHHHHHHHHHhh
Confidence 22 236788877889999999999988753
No 175
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=96.75 E-value=0.027 Score=42.50 Aligned_cols=90 Identities=13% Similarity=0.258 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCC--Cc---ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 12 TISEELRPKREILADALDKAG--MV---PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 12 ~~r~~~~~r~~~l~~~l~~~g--~~---~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
.+++.++++.+.+.+.|++.+ .. ...+. |.++-+++.... . .....++..|. ++||.+.|.
T Consensus 299 ~l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~-G~~~~i~~~~~~---~-------~~~~~~~~~l~-~~Gv~~~~~-- 364 (397)
T TIGR03246 299 ELLAGVKQRHDLFVDGLEKINARYNVFSEIRGK-GLLIGAVLTEAY---Q-------GKAKQFVNAAA-EEGVIALIA-- 364 (397)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCCeEeeecC-ceEEEEEEcCch---h-------hHHHHHHHHHH-HCCeEEeec--
Confidence 467888888888888887652 22 12333 445555553210 0 02557888764 789998762
Q ss_pred cccCcccCCCCCeEEE--EeeCChhHHHHHHHHHHHhhhc
Q psy788 87 FYSDEHKHLGENLIRY--CFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl--~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
+.+++|+ ++..+++++++++++|.+++.+
T Consensus 365 ---------g~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~ 395 (397)
T TIGR03246 365 ---------GPNVVRFAPSLVISDDDIDEGLARFERAIEQ 395 (397)
T ss_pred ---------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1368999 4556899999999999988764
No 176
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=96.57 E-value=0.058 Score=39.30 Aligned_cols=86 Identities=15% Similarity=0.054 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHH--HhCCeeEeCCCCccc
Q psy788 12 TISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMT--KNVKLQGIPPSAFYS 89 (126)
Q Consensus 12 ~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~gV~v~pg~~f~~ 89 (126)
+.++.+.++++.+.+.|+++|+.+.++.+++. .+..+... . ....+...+. .+.||.+.+.
T Consensus 248 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~v~~~~~~---~--------~~~~l~~~l~~~~~~gi~~~~~----- 310 (338)
T cd06502 248 RRLRHDHEMARRLAEALEELGGLESEVQTNIV-LLDPVEAN---A--------VFVELSKEAIERRGEGVLFYAW----- 310 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccccCCeE-EEecCCcc---H--------HHHHHHHHHHHhhhCCEEEEec-----
Confidence 44577778888999999888777777888854 45554211 0 1223444432 1568877662
Q ss_pred CcccCCCCCeEEEEeeC--ChhHHHHHHHHHHH
Q psy788 90 DEHKHLGENLIRYCFFK--KDETLREASSILQT 120 (126)
Q Consensus 90 ~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~ 120 (126)
. .+++|++.+. +.+++++.++.+.+
T Consensus 311 ~------~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 311 G------EGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred C------CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 1 2689999984 78889999888754
No 177
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=96.57 E-value=0.072 Score=40.71 Aligned_cols=89 Identities=16% Similarity=0.113 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHh----CC-CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 13 ISEELRPKREILADALDK----AG-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 13 ~r~~~~~r~~~l~~~l~~----~g-~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
+.+..+++.+.+.+.|++ ++ +....+..|+++|+.++... ....+.+.+ .++||.+.|...+
T Consensus 320 l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~i~l~~~~------------~~~~l~~~~-~~~Gv~~~~~~~~ 386 (425)
T PRK09264 320 FEKEVKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGDGE------------LAGKIAAEA-FENGLIIETSGPE 386 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceecceecccEEEEEecChH------------HHHHHHHHH-HHCCCEEeccCCC
Confidence 344444445555554443 22 22234456889999996421 245777775 4889999874322
Q ss_pred ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788 88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN 123 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~ 123 (126)
...+|++.. .+++++++++++|.++++
T Consensus 387 ---------~~~lr~~p~l~~t~~ei~~~~~~l~~~l~ 415 (425)
T PRK09264 387 ---------DEVVKLLPPLTIDEEELEEGLDILEEAVA 415 (425)
T ss_pred ---------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 245777655 478999999999988765
No 178
>PLN02624 ornithine-delta-aminotransferase
Probab=96.46 E-value=0.04 Score=42.73 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEe--eCChhHHHHHHHHHHHhhhc
Q psy788 66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF--FKKDETLREASSILQTWRNK 124 (126)
Q Consensus 66 ~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~--~~~~e~i~~~~~~l~~~~~~ 124 (126)
..++++.| .++||.+.|+ +.+++||+. ..++++|++++++|.+++.+
T Consensus 396 a~~~~~~L-~e~GV~v~p~-----------~~~~lR~~p~l~~t~e~id~~l~~L~~~l~~ 444 (474)
T PLN02624 396 AYDVCLKL-KERGLLAKPT-----------HDTIIRLAPPLSISEDELQECSKALSDVLEH 444 (474)
T ss_pred HHHHHHHH-HhCCeEEecC-----------CCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 45788886 5899999884 146899986 45899999999999988774
No 179
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=96.29 E-value=0.12 Score=39.49 Aligned_cols=76 Identities=13% Similarity=-0.036 Sum_probs=48.7
Q ss_pred CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEe--eCChh
Q psy788 32 GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF--FKKDE 109 (126)
Q Consensus 32 g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~--~~~~e 109 (126)
++....+.-|+++++++...... + +......+.+.+ .+.||.+.|. +. ..+.+|++. +.+++
T Consensus 351 ~~~~~vrg~Gl~~gi~~~~~~~~-~-----~~~~~~~~~~~l-~~~Gv~~~~~---g~------~~~~lRl~p~~~~t~~ 414 (433)
T PRK08117 351 PVIGDVRGIGLMIGIEIVDPDGE-P-----DGDAVEKILDKC-LEKGLLFYLC---GN------AGNVLRMIPPLTVTKE 414 (433)
T ss_pred CceeeeecCCcEEEEEEecCCCC-c-----chHHHHHHHHHH-HHCCCEEeec---CC------CCCEEEEeCCccCCHH
Confidence 33334566688888888532100 0 001134566665 5889988762 21 246899995 45999
Q ss_pred HHHHHHHHHHHhhh
Q psy788 110 TLREASSILQTWRN 123 (126)
Q Consensus 110 ~i~~~~~~l~~~~~ 123 (126)
+|++++++|.++++
T Consensus 415 ~i~~~~~~l~~~l~ 428 (433)
T PRK08117 415 EIDEGLDILDEALT 428 (433)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988775
No 180
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=96.24 E-value=0.11 Score=39.19 Aligned_cols=88 Identities=19% Similarity=0.136 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcc---cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788 13 ISEELRPKREILADALDKAGMVP---VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS 89 (126)
Q Consensus 13 ~r~~~~~r~~~l~~~l~~~g~~~---~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~ 89 (126)
+++..++..+.+.+.|++++..+ ..+.|.|+. +.++..... .+..+++..|. ++||.+.|+
T Consensus 308 l~~~~~~~~~~~~~~L~~l~~~~~~~~~g~g~~~~-i~~~~~~~~---------~~~~~l~~~l~-~~Gv~v~~~----- 371 (401)
T TIGR01885 308 LAENAEKLGEIFRDQLKKLPKPIITEVRGRGLLNA-IVIDESKTG---------RTAWDLCLKLK-EKGLLAKPT----- 371 (401)
T ss_pred HHHHHHHHHHHHHHHHHhccCCceeEEeecCeeEE-EEeccCcch---------hHHHHHHHHHH-hCCEEEEec-----
Confidence 34455566677777787763222 345666555 344321000 03567888864 889999773
Q ss_pred CcccCCCCCeEEEEee--CChhHHHHHHHHHHHhh
Q psy788 90 DEHKHLGENLIRYCFF--KKDETLREASSILQTWR 122 (126)
Q Consensus 90 ~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~ 122 (126)
..+.+||+.. .+++++++++++|.+++
T Consensus 372 ------~~~~lRi~p~l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 372 ------HGNIIRLAPPLVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred ------CCCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence 1367999875 48899999999998765
No 181
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=96.19 E-value=0.066 Score=40.35 Aligned_cols=80 Identities=11% Similarity=0.163 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 10 FYTISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
+..||.++.+.|..+.+.|.+. .+.+...+-|||-+.-++ .+++ .+|..+.+|.++.
T Consensus 311 l~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gls----------------~~QV-~rLree~~IY~v~-- 371 (396)
T COG1448 311 LEEMRQRILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGLS----------------PEQV-DRLREEFGIYLVA-- 371 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcccchHhhcCceeecCCCC----------------HHHH-HHHHHhccEEEec--
Confidence 5789999999999999999984 488999999999987332 3444 4567788887554
Q ss_pred CcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHh
Q psy788 86 AFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTW 121 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~ 121 (126)
.+ |+|++. +...++.-++.|.++
T Consensus 372 -----------sG--Ri~vaGl~~~ni~~va~ai~~v 395 (396)
T COG1448 372 -----------SG--RINVAGLNTSNIDYVAKAIAAV 395 (396)
T ss_pred -----------CC--eeeeccCChhhHHHHHHHHHhh
Confidence 12 999997 777777666666543
No 182
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=96.18 E-value=0.004 Score=45.92 Aligned_cols=90 Identities=16% Similarity=0.062 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 9 YFYTISEELRPKREILADALDKAGMVPVI-PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~-p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
.++..++++++.++.+.+.|.+.|+++.. |.+....++.+.-.+ . +..++...| .+ +|.+.||+.|
T Consensus 258 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~--~---------~~~~v~~~L-~~-~i~v~~g~~~ 324 (353)
T TIGR03235 258 NAQAWEVKLRAMRNQLRDALQTLGVKLNGDPAETIPHILNFSIDG--V---------NSEALIVNL-RA-DAAVSTGSAC 324 (353)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCeEEeCCcccccCCEEEEEeCC--c---------CHHHHHHHH-hC-CeEEEchhhc
Confidence 45778889999999999999776777643 333222333332111 1 355777775 44 8999999999
Q ss_pred ccCcccCCCCCeEEEEeeCChhHHHHH
Q psy788 88 YSDEHKHLGENLIRYCFFKKDETLREA 114 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~~~~e~i~~~ 114 (126)
.... .++.++|.+++.+++.+..+
T Consensus 325 ~~~~---~~~~~~l~~~g~~~~~~~~~ 348 (353)
T TIGR03235 325 SSSK---YEPSHVLQAMGLDTDRARGA 348 (353)
T ss_pred CCCC---CCCCHHHHHcCCCHHHhCcc
Confidence 7642 23457888888866665444
No 183
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=96.04 E-value=0.27 Score=38.51 Aligned_cols=99 Identities=13% Similarity=0.056 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccC--CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788 11 YTISEELRPKREILADALDKAGMVPVI--PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY 88 (126)
Q Consensus 11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~--p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~ 88 (126)
+..++.+.++-+.+.+.|.+.|+.+.. .+.. .+++++.... . +...+.+. +.+.||.+.+-....
T Consensus 338 ~~y~~~l~~Na~~La~~L~~~G~~vv~ggTdsh-IV~V~lg~~~--~---------~g~~a~~~-L~e~GI~vn~i~~Pt 404 (493)
T PRK13580 338 QKYAQQVVDNARALAEGFLKRGARLVTGGTDNH-LVLIDVTSFG--L---------TGRQAESA-LLDAGIVTNRNSIPS 404 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccCCCCCCC-EEEEEeCCHH--H---------HHHHHHHH-HHHCCeEEccccCCC
Confidence 556788888889999999888887642 3333 5667776421 0 12244455 569999998765444
Q ss_pred cCcccCCCCCeEEEEeeC------ChhHHHHHHHHHHHhhh
Q psy788 89 SDEHKHLGENLIRYCFFK------KDETLREASSILQTWRN 123 (126)
Q Consensus 89 ~~~~~~~~~~~~Rl~~~~------~~e~i~~~~~~l~~~~~ 123 (126)
.... ...+..+||+... +++++++.++.|.++++
T Consensus 405 vp~g-~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~ 444 (493)
T PRK13580 405 DPNG-AWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLS 444 (493)
T ss_pred CCCC-CCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHH
Confidence 3210 0115679998764 46788888888877664
No 184
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=96.00 E-value=0.13 Score=39.59 Aligned_cols=96 Identities=17% Similarity=0.131 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHhC--CCcc---cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 13 ISEELRPKREILADALDKA--GMVP---VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 13 ~r~~~~~r~~~l~~~l~~~--g~~~---~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
+.+..+++.+.+.+.|+++ ...+ ..+.|.|+ .+++.......+ +......+...+ .++||.+.|+..|
T Consensus 340 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~-~i~~~~~~~~~~-----~~~~~~~l~~~~-~~~Gv~~~~~~~~ 412 (443)
T PRK06058 340 LVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMI-AIELVKPGTTEP-----DAELTKALAAAA-HAAGVIVLTCGTY 412 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccceEE-EEEEecCCCCCC-----cHHHHHHHHHHH-HHCCeEEeccCCC
Confidence 4455566666677777653 1222 35666655 455532100000 000123456664 4789999987544
Q ss_pred ccCcccCCCCCeEEEE--eeCChhHHHHHHHHHHHhhhc
Q psy788 88 YSDEHKHLGENLIRYC--FFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~--~~~~~e~i~~~~~~l~~~~~~ 124 (126)
+ +.+|+. ++.+++++++++++|.+++++
T Consensus 413 ~---------~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 413 G---------NVIRLLPPLVIGDELLREGLDVLEAALAD 442 (443)
T ss_pred C---------CEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence 2 478884 666999999999999988753
No 185
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=95.98 E-value=0.14 Score=38.76 Aligned_cols=103 Identities=17% Similarity=0.099 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhC--CCcccC---CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788 8 CYFYTISEELRPKREILADALDKA--GMVPVI---PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI 82 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~--g~~~~~---p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~ 82 (126)
..+......+..-|+.+.+.|.+. ++.+.. +--.-.+-+.++.. +.+.+... +..+||.+.
T Consensus 256 ~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv-------------~gE~ll~~-L~~~gI~vS 321 (386)
T COG1104 256 EELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGV-------------EGESLLLA-LDLAGIAVS 321 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCC-------------cHHHHHHh-ccccCeEEe
Confidence 345566667777788888888764 233321 21223444555542 25556565 578899999
Q ss_pred CCCCcccCcc-c-----------CCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788 83 PPSAFYSDEH-K-----------HLGENLIRYCFFK--KDETLREASSILQTWRNK 124 (126)
Q Consensus 83 pg~~f~~~~~-~-----------~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~ 124 (126)
.||+-.+..- + ....+.+||||+. ++++++.+++.|.+++++
T Consensus 322 tGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~ 377 (386)
T COG1104 322 TGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKR 377 (386)
T ss_pred ccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9998876421 0 1134789999996 888999999999888764
No 186
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=95.78 E-value=0.32 Score=37.03 Aligned_cols=92 Identities=10% Similarity=0.072 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCc
Q psy788 12 TISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDE 91 (126)
Q Consensus 12 ~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~ 91 (126)
..|..++++-..+.+.+...++.+.++... .+.+-+.... ...+++..|+ +.||.+.+.......
T Consensus 294 ~~r~~L~~~~~~~~~~~~~~~~~~~~s~s~-I~pv~~gd~~------------~a~~~s~~l~-~~Gi~v~~i~~PTVp- 358 (388)
T COG0156 294 ERRERLQELAAFFRSLLKALGLVLLPSESP-IIPVILGDEE------------RALEASRALL-EEGIYVSAIRPPTVP- 358 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccCCCCCC-eeeeEeCCHH------------HHHHHHHHHH-HCCeeEeeecCCCCC-
Confidence 455666666666665554446666444444 4445454321 3668888876 459999986544332
Q ss_pred ccCCCCCeEEEEeeC--ChhHHHHHHHHHHHh
Q psy788 92 HKHLGENLIRYCFFK--KDETLREASSILQTW 121 (126)
Q Consensus 92 ~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~ 121 (126)
.++..+|++.+. ++++|+..++.|.++
T Consensus 359 ---~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 359 ---KGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred ---CCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 367889999985 888888888777653
No 187
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=95.75 E-value=0.25 Score=38.02 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe-CCCCc
Q psy788 10 FYTISEELRPKREILADALDKAGMVPVIPDG-GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI-PPSAF 87 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~g-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~-pg~~f 87 (126)
.+.++++..++.+.+.+.|.+.|+.+..+.. .-..++.+...+ . +..++...| .+.||.+. +|- +
T Consensus 301 ~~~~~~~i~~l~~~l~~~L~~~g~~v~~~~~~~~~~~v~~~~~~--~---------~~~~~~~~L-~~~gI~vs~~~~-p 367 (452)
T PTZ00094 301 WKEYAKQVLKNAKALAAALEKRGYDLVTGGTDNHLVLVDLRPFG--I---------TGSKMEKLL-DAVNISVNKNTI-P 367 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEecCCCCCceEeecCCcCC--C---------CHHHHHHHH-HHCCcEEecccC-C
Confidence 4567788888888999999776776643211 223445554321 1 245666664 67899994 433 2
Q ss_pred ccCcccCCCCCeEEEEeeC------ChhHHHHHHHHHHHhhh
Q psy788 88 YSDEHKHLGENLIRYCFFK------KDETLREASSILQTWRN 123 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~~------~~e~i~~~~~~l~~~~~ 123 (126)
+... ...++.+|++... ++++++..++.|.++++
T Consensus 368 ~~~~--~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~ 407 (452)
T PTZ00094 368 GDKS--ALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVK 407 (452)
T ss_pred CCCc--CCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 2210 0135789999853 27888888887777665
No 188
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=95.63 E-value=0.52 Score=35.65 Aligned_cols=105 Identities=7% Similarity=-0.043 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcc-cCC---------CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCee
Q psy788 11 YTISEELRPKREILADALDKAGMVP-VIP---------DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQ 80 (126)
Q Consensus 11 ~~~r~~~~~r~~~l~~~l~~~g~~~-~~p---------~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~ 80 (126)
.+++..++++.+++.+.|++.++++ ... ..|..+-+.+..... . ....+.....++++.+ .++||.
T Consensus 261 ~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~--~-~~~~~~~~~~~~~~~~-~~~Gi~ 336 (392)
T PLN03227 261 PQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPISPIIYLRLSDQEA--T-RRTDETLILDQIAHHS-LSEGVA 336 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCEEEEEeCCHHH--h-hhhhhhhHHHHHHHHH-HHCCCE
Confidence 3567778888899999887543321 111 224455566643100 0 0000000123677776 478999
Q ss_pred EeCCCCc----ccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 81 GIPPSAF----YSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 81 v~pg~~f----~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
+.+.... ... .++..+|+++.. ++++++++++.|.++++
T Consensus 337 ~~~~~~~~~~~~~~----~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~ 381 (392)
T PLN03227 337 VVSTGGHVKKFLQL----VPPPCLRVVANASHTREDIDKLLTVLGEAVE 381 (392)
T ss_pred EEecccccCCcCCC----CCCceEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 8752211 111 135678999985 88999999999988775
No 189
>KOG0633|consensus
Probab=95.54 E-value=0.46 Score=34.55 Aligned_cols=86 Identities=15% Similarity=0.033 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhC-CCc--ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 8 CYFYTISEELRPKREILADALDKA-GMV--PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~--~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
.++...|+.+-+.|..+...|.++ ++. +-..++. |+.+++.... + . -+..+...++...||+|.=
T Consensus 276 kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~daN-FiLi~v~~~~-n-~--------~akkly~q~at~~gVvVRf- 343 (375)
T KOG0633|consen 276 KKMEDVRDAIVRERERLFKELTEVPFLNDYPGGSDAN-FILIEVTGGD-N-G--------MAKKLYKQDATKMGVVVRF- 343 (375)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCccccCCCCccccc-EEEEEEcCCC-c-H--------HHHHHHHHHHHhcceEEEE-
Confidence 577888999988888898888876 322 2333444 7778886431 0 0 1445666677789998752
Q ss_pred CCcccCcccCCCCCeEEEEeeCChhH
Q psy788 85 SAFYSDEHKHLGENLIRYCFFKKDET 110 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~ 110 (126)
.+.. ...++++|++++++++.
T Consensus 344 --rgse---~~c~G~lRitvGt~Een 364 (375)
T KOG0633|consen 344 --RGSE---EGCKGYLRITVGTPEEN 364 (375)
T ss_pred --cCCc---cccceeEEEEcCCcccc
Confidence 2222 13689999999985543
No 190
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=95.43 E-value=0.52 Score=35.13 Aligned_cols=94 Identities=15% Similarity=0.206 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCccc--CC--CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 10 FYTISEELRPKREILADALDKA-GMVPV--IP--DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~-g~~~~--~p--~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
++.+.++.++..+++.+.|++. |+... .| .++.-+-+.++... .+.++... +.+.|+.+.+|
T Consensus 249 ~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~~------------~~~~~~~~-~~~~Gi~~~~~ 315 (349)
T TIGR01364 249 VKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNEE------------LEKRFLKE-AEERGLVSLKG 315 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCChh------------HhHHHHHH-HHHCCCcccCC
Confidence 6778888888999999999888 55322 12 12222333343210 13455455 45889977776
Q ss_pred CCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhcC
Q psy788 85 SAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNKN 125 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~~ 125 (126)
.. . .+.+|+|+.. +.++++..++.|.++.+||
T Consensus 316 ~~---~------~g~vRvS~~~~nt~edid~l~~al~~~~~~~ 349 (349)
T TIGR01364 316 HR---S------VGGMRASIYNAMPLEGVQALVDFMKEFQKKH 349 (349)
T ss_pred cc---c------cCeeEEECcCCCCHHHHHHHHHHHHHHHHhC
Confidence 44 1 3579999985 7899999999999888775
No 191
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=95.15 E-value=0.65 Score=35.43 Aligned_cols=99 Identities=13% Similarity=0.070 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCC-CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788 12 TISEELRPKREILADALDKAGMVPVIP-DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD 90 (126)
Q Consensus 12 ~~r~~~~~r~~~l~~~l~~~g~~~~~p-~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~ 90 (126)
..++++.++-+.+.+.|.+.|+++..| ..+--+++.+.... . +...+.+. +.++||.+.+-...+..
T Consensus 286 ~~~~~l~~~a~~l~~~L~~~G~~~~~~~~~t~i~~v~~~~~~--~---------~~~~~~~~-L~~~GI~v~~~~~p~~~ 353 (416)
T PRK13034 286 TYAKQVIANAQALAEVLKERGYDLVSGGTDNHLLLVDLRPKG--L---------SGKDAEQA-LERAGITVNKNTVPGDT 353 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEeccCCCCCcEEEEEcCCCC--C---------CHHHHHHH-HHhCCcEEeccCCCCCC
Confidence 456788888888888888778877543 12334556554321 0 23445565 46889988752222110
Q ss_pred cccCCCCCeEEEEeeC------ChhHHHHHHHHHHHhhh
Q psy788 91 EHKHLGENLIRYCFFK------KDETLREASSILQTWRN 123 (126)
Q Consensus 91 ~~~~~~~~~~Rl~~~~------~~e~i~~~~~~l~~~~~ 123 (126)
.. +..+..+|++... ++++++..++.|.+++.
T Consensus 354 ~~-p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~ 391 (416)
T PRK13034 354 ES-PFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLD 391 (416)
T ss_pred cC-CCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 00 0135679998543 57888999988887765
No 192
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=95.14 E-value=0.69 Score=34.73 Aligned_cols=96 Identities=10% Similarity=0.052 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CcccC--C--CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 10 FYTISEELRPKREILADALDKAG-MVPVI--P--DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~g-~~~~~--p--~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
++.+.++.++..+.+.+.|++.+ +.+.. | .++.-+-+.++..... .+.++...++ ++|+.+..|
T Consensus 270 ~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~----------~~~~~~~~l~-~~~i~v~~g 338 (378)
T PRK03080 270 LDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQAA----------VDAAAVAKLL-RENGAVDIE 338 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCchHH----------HHHHHHHHHH-HcCCeeccc
Confidence 45667777888888888888774 44432 2 1222333444430000 1234556655 558888776
Q ss_pred CCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 85 SAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
. +.. ..+.+|+|+.. +.++++..++.|.++++
T Consensus 339 ~-~~~------~~~~vRis~~~~~t~~di~~l~~al~~~~~ 372 (378)
T PRK03080 339 P-YRD------APNGLRIWCGPTVEPADVEALTPWLDWAFE 372 (378)
T ss_pred c-ccC------CCCcEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 4 221 24789999984 78889998888887665
No 193
>PRK14012 cysteine desulfurase; Provisional
Probab=95.11 E-value=0.32 Score=36.66 Aligned_cols=97 Identities=15% Similarity=0.131 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCcccC--C---CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788 9 YFYTISEELRPKREILADALDKA-GMVPVI--P---DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI 82 (126)
Q Consensus 9 ~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~--p---~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~ 82 (126)
++..+.+.+++.++.+.+.|.++ ++.+.. + .+.+++|..... ..++...| .++.|.
T Consensus 262 ~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l---~~~~i~ 323 (404)
T PRK14012 262 EMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVE---------------GESLIMAL---KDLAVS 323 (404)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcC---------------HHHHHHhC---CCeEEE
Confidence 34455666667777777777665 444321 1 233345444321 23455553 377888
Q ss_pred CCCCcccCcc------------cCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 83 PPSAFYSDEH------------KHLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 83 pg~~f~~~~~------------~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
+|..|..... .....+.+|++++. ++++++..++.|.++++
T Consensus 324 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~ 378 (404)
T PRK14012 324 SGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIG 378 (404)
T ss_pred chhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 8766643210 00124789999995 78889999998887664
No 194
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=95.03 E-value=0.57 Score=35.06 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-cc-cCC--CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 10 FYTISEELRPKREILADALDKAGM-VP-VIP--DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~g~-~~-~~p--~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
++.+.++.++..+.+.+.|++.++ .. ..| ..+.-+-+.++.. . ++.++...+ .+.|+.+.+|.
T Consensus 260 ~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~---~---------~~~~~~~~~-~~~Gi~~~~~~ 326 (360)
T PRK05355 260 VAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADE---E---------LDKKFLAEA-KAAGLVGLKGH 326 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCCh---H---------HHHHHHHHH-HHCCCcccCCC
Confidence 677788888888899999988753 22 221 1222333344432 1 234555554 47899875554
Q ss_pred CcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhcC
Q psy788 86 AFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNKN 125 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~~ 125 (126)
. . .+.+|+|+.. +.++++..++.|.+++++|
T Consensus 327 ~---~------~g~vRiS~~~~nt~eei~~l~~~l~~~~~~~ 359 (360)
T PRK05355 327 R---S------VGGMRASIYNAMPLEGVQALVDFMKEFERRH 359 (360)
T ss_pred C---c------cCcEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 2 1 3679999985 7899999999999988876
No 195
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=95.02 E-value=0.71 Score=34.51 Aligned_cols=95 Identities=11% Similarity=0.096 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC-Cccc-CCC---cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 10 FYTISEELRPKREILADALDKAG-MVPV-IPD---GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~g-~~~~-~p~---gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
++.+.+++++..+.+.+.+.+.+ +++. ... ......+.+++. + +..++...| .+.||.+.+|
T Consensus 259 ~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~g---~---------~~~~v~~~L-~~~gI~i~~~ 325 (361)
T TIGR01366 259 LDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFVDD---I---------DAATVAKIL-RANGIVDTEP 325 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECCCc---c---------CHHHHHHHH-HHCCCeeccC
Confidence 44556777777888888888774 4432 111 111122333321 2 356777776 5779999876
Q ss_pred CCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788 85 SAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNK 124 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~ 124 (126)
. ..- +.+.+|+|+.. +.++++..++.|.+++++
T Consensus 326 ~--~~l-----~~~~vRis~~~~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 326 Y--RKL-----GRNQLRVAMFPAIDPDDVEALTECVDWVVER 360 (361)
T ss_pred c--ccc-----CCCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence 3 221 24689999985 888899999988877653
No 196
>PRK08297 L-lysine aminotransferase; Provisional
Probab=95.01 E-value=0.8 Score=35.34 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=42.8
Q ss_pred ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEE--EeeCChhHHHHHHHHH
Q psy788 41 GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRY--CFFKKDETLREASSIL 118 (126)
Q Consensus 41 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl--~~~~~~e~i~~~~~~l 118 (126)
|+++.++++... ....+...++ +.||.+.|+. .+.+|+ ++..+++++++++++|
T Consensus 380 G~~~~i~~~~~~------------~~~~~~~~l~-~~Gvl~~~~~-----------~~~lr~~P~l~~t~~eid~~l~~l 435 (443)
T PRK08297 380 GLMCAFDLPTTA------------DRDEVIRRLW-EEGVLVLPCG-----------ERSIRFRPALTVTTEEIDAAIDAL 435 (443)
T ss_pred ceEEEEEecCHH------------HHHHHHHHHH-HCCEEEecCC-----------CCeEEEECCccCCHHHHHHHHHHH
Confidence 667778886421 2446777765 8899997732 234677 6667899999999999
Q ss_pred HHhhhc
Q psy788 119 QTWRNK 124 (126)
Q Consensus 119 ~~~~~~ 124 (126)
.+++..
T Consensus 436 ~~~l~~ 441 (443)
T PRK08297 436 RRALPE 441 (443)
T ss_pred HHHHHh
Confidence 888753
No 197
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.78 Score=35.09 Aligned_cols=98 Identities=14% Similarity=0.088 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCcccCC----CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 10 FYTISEELRPKREILADALDKA-GMVPVIP----DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p----~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
+..+.+.-++-.+++.+.|.++ ++++..| .++++ -..++.. ...+++..| .++||.+.-|
T Consensus 298 ~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~v-sF~v~~~-------------~~~dv~~~L-~~~gI~vr~g 362 (405)
T COG0520 298 MEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIV-SFNVKGI-------------HPHDVATLL-DEKGIAVRAG 362 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEE-EEEeCCC-------------CHHHHHHHH-HhCCeEEEec
Confidence 3556666777777788888877 6777554 34533 3445432 266788875 5888999998
Q ss_pred CCcccCc-ccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhh
Q psy788 85 SAFYSDE-HKHLGENLIRYCFFK--KDETLREASSILQTWR 122 (126)
Q Consensus 85 ~~f~~~~-~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~ 122 (126)
......- .....+..+|+|++. +.++++..++.|.++.
T Consensus 363 ~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~ 403 (405)
T COG0520 363 HHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKAL 403 (405)
T ss_pred cccccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence 6554210 000123459999995 8888998888887764
No 198
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=94.95 E-value=0.15 Score=38.07 Aligned_cols=92 Identities=11% Similarity=0.028 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCcccC--CCcceE---EEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 13 ISEELRPKREILADALDKA-GMVPVI--PDGGYF---MVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 13 ~r~~~~~r~~~l~~~l~~~-g~~~~~--p~gg~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
..+.+.++++.+.+.|.++ |+++.. +.++.- .-+.+......+ +..++++.| .+.++.|.+-..
T Consensus 264 ~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~~g~---------~~~~l~~~L-~~~~~~I~~r~~ 333 (363)
T TIGR01437 264 SGAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESELGM---------TAADVVQAL-RQGEPAIYTRGY 333 (363)
T ss_pred cHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccCCCC---------CHHHHHHHH-hcCCCCEEEeee
Confidence 3445666777889999887 777643 222221 112232100001 467888886 567755555333
Q ss_pred cccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHh
Q psy788 87 FYSDEHKHLGENLIRYCFFK-KDETLREASSILQTW 121 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~ 121 (126)
|. ..+.+|+++.. ++++++..+++|.++
T Consensus 334 ~~-------~~~~~~l~~~~~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 334 KA-------NEGIIEIDPRSVTGGQLDIIVERIREI 362 (363)
T ss_pred ee-------cCCeEEEEeecCCHHHHHHHHHHHHHh
Confidence 43 25688999987 788888888888765
No 199
>PLN02452 phosphoserine transaminase
Probab=94.30 E-value=1.2 Score=33.57 Aligned_cols=94 Identities=14% Similarity=0.172 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CC-cc-cCC--CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 10 FYTISEELRPKREILADALDKA-GM-VP-VIP--DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~-g~-~~-~~p--~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
++.+.++++++.+++.+.|++. |+ .. ..| ...+-+-..++.. + ...+|.+.+ +++|+...||
T Consensus 264 l~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~----~--------~~~~f~~~~-~~~g~~~~~G 330 (365)
T PLN02452 264 LKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGS----E--------LEAEFVKEA-AKAGMVQLKG 330 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCc----h--------hHHHHHHHH-HHCCCcccCC
Confidence 6788899999999999999886 66 11 122 2444444455432 1 366888884 7999999998
Q ss_pred CCcccCcccCCCCCeEEEEee-C-ChhHHHHHHHHHHHhhhcC
Q psy788 85 SAFYSDEHKHLGENLIRYCFF-K-KDETLREASSILQTWRNKN 125 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~-~-~~e~i~~~~~~l~~~~~~~ 125 (126)
..-. + + +|+|.= . +.+.++.-++-+.++.++|
T Consensus 331 ~r~~-------g-g-~R~s~yna~~~~~v~~L~~~m~~f~~~~ 364 (365)
T PLN02452 331 HRSV-------G-G-MRASIYNAMPLAGVEKLVAFMKDFQAKH 364 (365)
T ss_pred cccc-------C-c-eEEECcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5331 2 3 999874 3 7777777777777766654
No 200
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=94.25 E-value=1.4 Score=33.75 Aligned_cols=68 Identities=16% Similarity=0.104 Sum_probs=42.8
Q ss_pred ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEE--eeCChhHHHHHHHHH
Q psy788 41 GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYC--FFKKDETLREASSIL 118 (126)
Q Consensus 41 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~--~~~~~e~i~~~~~~l 118 (126)
|+++|+++.......+ +......+.+.+ .+.||.+.+. +. ..+.+||. +..+++++++++++|
T Consensus 351 Gl~~~iel~~~~~~~~-----~~~~~~~~~~~~-~~~Gvl~~~~---g~------~~~~~r~~Ppl~it~~~id~~~~~l 415 (425)
T PRK07495 351 GFMNAVEFNDADSGLP-----SAEFANRVRLKA-LEKGLILLTC---GV------HGNVIRFLAPITIQDDVFAEALDIL 415 (425)
T ss_pred ceEEEEEEecCCCCCc-----cHHHHHHHHHHH-HHCCeEEeec---CC------CCCEEEEeCCCccCHHHHHHHHHHH
Confidence 8999999954210000 000123466664 4789998653 11 13567775 445889999999999
Q ss_pred HHhhh
Q psy788 119 QTWRN 123 (126)
Q Consensus 119 ~~~~~ 123 (126)
.++++
T Consensus 416 ~~~l~ 420 (425)
T PRK07495 416 EASIL 420 (425)
T ss_pred HHHHH
Confidence 98875
No 201
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=94.17 E-value=0.81 Score=34.14 Aligned_cols=49 Identities=8% Similarity=0.124 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 66 ~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
..++.+.| .+.||.+... .+. ..+++|++++. ++++++..++.|.++++
T Consensus 299 ~~~~~~~L-~~~gi~v~~~--~~~------~~~~iRis~~~~~t~edid~l~~~L~~~~~ 349 (370)
T PRK05937 299 EQELYSKL-VETGIRVGVV--CFP------TGPFLRVNLHAFNTEDEVDILVSVLATYLE 349 (370)
T ss_pred HHHHHHHH-HHCCeeEEee--CCC------CCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 45677765 5889987642 111 24689999984 88899999998887764
No 202
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=94.04 E-value=1.3 Score=33.95 Aligned_cols=103 Identities=18% Similarity=0.111 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcc-cCCCcceEEEEeeCCc-ccccccCCC-CCchhhHHHHHHHHHhCCeeEeCC
Q psy788 8 CYFYTISEELRPKREILADALDKAGMVP-VIPDGGYFMVADWTQL-RPMLRLDTE-SDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~-~~p~gg~~~~i~~~~~-~~~~~~~~~-~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
+++.++++.....++.+.+.+.++++.. ..+.|.|+- +.+... ..... +.. .+......+...|. ++||.+.|.
T Consensus 319 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg~G~~~~-i~l~~~~~~~~~-~~~~~~~~~~~~i~~~l~-~~Gv~v~~~ 395 (426)
T PRK00062 319 GFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFG-LFFTDEPVTNYA-DAKKSDTERFARFFHAML-DEGVYLAPS 395 (426)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEE-EEEecCCCcchh-hhccccHHHHHHHHHHHH-HCCeEeecC
Confidence 4666777777776676666666666554 345666554 444321 00000 000 00001246777764 889998773
Q ss_pred CCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 85 SAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
. + +-+++++..++++++++++.|.+++++
T Consensus 396 ~-~----------~~~~~~~~~t~~ei~~~~~~l~~~l~~ 424 (426)
T PRK00062 396 Q-F----------EAGFVSAAHTDEDIEKTLEAARKAFAA 424 (426)
T ss_pred C-c----------CceeeeccCCHHHHHHHHHHHHHHHHh
Confidence 1 1 124677777899999999999888753
No 203
>PLN02955 8-amino-7-oxononanoate synthase
Probab=93.94 E-value=1.6 Score=34.22 Aligned_cols=52 Identities=8% Similarity=0.080 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhh
Q psy788 66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWR 122 (126)
Q Consensus 66 ~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~ 122 (126)
..++++.|. ++||.+.+....... .+...+|++++. ++++|+..++.|.++.
T Consensus 406 a~~~~~~L~-~~Gi~v~~i~yPtVP----~g~~rLRi~lsA~Ht~edId~lv~~L~~~~ 459 (476)
T PLN02955 406 ALKASRYLL-KSGFHVMAIRPPTVP----PNSCRLRVTLSAAHTTEDVKKLITALSSCL 459 (476)
T ss_pred HHHHHHHHH-HCCCEEEEECCCCCC----CCCceEEEeeCCCCCHHHHHHHHHHHHHHH
Confidence 457788864 889999986544332 345689999985 8899999999987654
No 204
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=93.06 E-value=2.2 Score=31.73 Aligned_cols=89 Identities=17% Similarity=0.169 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCcccC----C-CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC
Q psy788 10 FYTISEELRPKREILADALDKA-GMVPVI----P-DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP 83 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~-g~~~~~----p-~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p 83 (126)
+++++++..+..+.+.+.|.+. ++.+.. + .++ .+-+.++.. +..++...|. +.||.+..
T Consensus 273 ~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-i~~~~~~~~-------------~~~~~~~~L~-~~~I~~~~ 337 (371)
T PF00266_consen 273 IERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPS-IVSFNLPGS-------------DADDVVKYLE-ERGIAVST 337 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTT-EEEEEETTS-------------SHHHHHHHHH-HHTEEEEE
T ss_pred cccchhhhhhHHHHHHhhhhcCCceeEeeecccccccc-eEEEeecCC-------------CHHHHHHHHh-hcCEEEec
Confidence 5667777888888888888887 444422 2 344 344555532 3667778765 55999999
Q ss_pred CCCcccCc-ccCCCCCeEEEEeeC--ChhHHHH
Q psy788 84 PSAFYSDE-HKHLGENLIRYCFFK--KDETLRE 113 (126)
Q Consensus 84 g~~f~~~~-~~~~~~~~~Rl~~~~--~~e~i~~ 113 (126)
|....... ......+.+|+|++. +.+++++
T Consensus 338 G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~ 370 (371)
T PF00266_consen 338 GSACAGPSLDILGMGGVIRVSLHYYNTEEDVDR 370 (371)
T ss_dssp STTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHH
T ss_pred cCcccHHHHHHhCCCCEEEEeccCCCCHHHHhh
Confidence 77554100 000124899999985 6666654
No 205
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=92.93 E-value=1.8 Score=32.65 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC-C--c-ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788 8 CYFYTISEELRPKREILADALDKA-GMVPVIP-D--G-GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI 82 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p-~--g-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~ 82 (126)
.++....+++++.++.+.+.|.++ ++.+..+ + . +. +.+.++.. +..++...+ .++.+.
T Consensus 259 ~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~-~~v~f~~~-------------~~~~~~~~l---~~i~v~ 321 (402)
T TIGR02006 259 EEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGN-LNVSFNYV-------------EGESLIMAL---KDLAVS 321 (402)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCe-EEEEEeCc-------------CHHHHHHhc---CCEEEe
Confidence 356677788888888888888765 4544321 1 0 11 12333321 233454443 478888
Q ss_pred CCCCcccCcc------------cCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 83 PPSAFYSDEH------------KHLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 83 pg~~f~~~~~------------~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
.|........ .....+.+|+|++. +.++++..++.|.++++
T Consensus 322 ~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~ 376 (402)
T TIGR02006 322 SGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAID 376 (402)
T ss_pred chhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 8876533110 00013789999995 88889999988877654
No 206
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=92.71 E-value=3.4 Score=31.22 Aligned_cols=86 Identities=9% Similarity=0.054 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-----CCcccCCC-----cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCe
Q psy788 10 FYTISEELRPKREILADALDKA-----GMVPVIPD-----GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKL 79 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~-----g~~~~~p~-----gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV 79 (126)
++.++++.++..+.+.+.|.+. ++.+..|. ++ .+.+.++ . +..++.+.| .++||
T Consensus 307 ~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~-~v~~~~~-~-------------~~~~~~~~L-~~~gi 370 (406)
T TIGR01814 307 MEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGC-QLSLTHP-V-------------PGKAVFQAL-IKRGV 370 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCC-eEEEEec-C-------------CHHHHHHHH-HHCCE
Confidence 3555666666666777777653 25554432 23 3344454 1 245677776 57799
Q ss_pred eEeCCCCcccCcccCCCCCeEEEEee--C-ChhHHHHHHHHHHHhh
Q psy788 80 QGIPPSAFYSDEHKHLGENLIRYCFF--K-KDETLREASSILQTWR 122 (126)
Q Consensus 80 ~v~pg~~f~~~~~~~~~~~~~Rl~~~--~-~~e~i~~~~~~l~~~~ 122 (126)
.+.+ . ..+.+|+|++ . +.++++..++.|.+++
T Consensus 371 ~v~~----~-------~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 371 IGDK----R-------EPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred EEec----c-------CCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 8642 1 2468999984 3 8889999999887654
No 207
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=92.63 E-value=2.3 Score=32.42 Aligned_cols=82 Identities=22% Similarity=0.306 Sum_probs=54.3
Q ss_pred HHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcc-----cCC
Q psy788 21 REILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEH-----KHL 95 (126)
Q Consensus 21 ~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~-----~~~ 95 (126)
-++|.+.|.+.|+++..|.||==++++..+....++ .+.. ..+.|+-.|..+.||..+--..|....+ +++
T Consensus 336 v~YL~~~l~~~GVpi~~paGGHavfvda~~~lphip---~eqF-paqala~ely~e~GiRavElG~~~~~rd~ktg~q~~ 411 (471)
T COG3033 336 VQYLADGLEEAGVPIVQPAGGHAVFVDAGKFLPHIP---AEQF-PAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHP 411 (471)
T ss_pred HHHHHHHHHhcCCeeEecCCCceEEeehhhhcCCCC---hhhC-cHHHHHHHHHHHhCeeeeeeeceecccCCCccccCC
Confidence 356788888889999999999889999765321110 0111 3667888889999998776665654211 111
Q ss_pred -CCCeEEEEeeC
Q psy788 96 -GENLIRYCFFK 106 (126)
Q Consensus 96 -~~~~~Rl~~~~ 106 (126)
.-..+|+++.+
T Consensus 412 ~~~elvRltipR 423 (471)
T COG3033 412 PPAELVRLTIPR 423 (471)
T ss_pred CchheeeEeccc
Confidence 12678998874
No 208
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=92.38 E-value=2.6 Score=32.34 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=38.2
Q ss_pred ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEe--eCChhHHHHHHHHH
Q psy788 41 GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF--FKKDETLREASSIL 118 (126)
Q Consensus 41 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~--~~~~e~i~~~~~~l 118 (126)
|+++.++++.. + ....+.+.|. +.||.+.|.. .+.+|++. ..++++++++++.|
T Consensus 373 G~~~~i~~~~~----~--------~~~~~~~~l~-~~Gvl~~~~g-----------~~~lr~~P~l~~t~~eid~~l~~l 428 (431)
T TIGR03251 373 GLMCAFDLPST----A--------DRDEVIRQLY-REGVLLLGCG-----------ERSIRFRPPLTVTREEIDAAIDAI 428 (431)
T ss_pred ceeEEEEeCCH----H--------HHHHHHHHHH-hCCeEEecCC-----------CCeEEEECCccCCHHHHHHHHHHH
Confidence 66777777642 0 2446777765 8899987631 23467654 45899999999988
Q ss_pred HH
Q psy788 119 QT 120 (126)
Q Consensus 119 ~~ 120 (126)
.+
T Consensus 429 ~~ 430 (431)
T TIGR03251 429 RR 430 (431)
T ss_pred Hh
Confidence 65
No 209
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=92.13 E-value=4.2 Score=31.80 Aligned_cols=99 Identities=12% Similarity=0.044 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCC-cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788 11 YTISEELRPKREILADALDKAGMVPVIPD-GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS 89 (126)
Q Consensus 11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~p~-gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~ 89 (126)
+..+++..++.+.+.+.|.+.|+++..+. -.-.+++++...+ + +..++... +...||.+..+..++.
T Consensus 313 ~~~~~~~~~na~~L~~~L~~~G~~l~~~~t~~hi~lv~~~~~g--i---------~~~~~~~~-L~~~~I~~nk~~~p~~ 380 (475)
T PLN03226 313 KAYQKQVKANAAALANRLMSKGYKLVTGGTDNHLVLWDLRPLG--L---------TGSRVEKV-LDLAHITLNKNAVPGD 380 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEcCCCCCCEEEEEccCCC--C---------CHHHHHHH-HHHCCCEECCCCCCCC
Confidence 45677888888888888887788875431 1345667774322 2 35566666 4689999988765543
Q ss_pred CcccCCCCCeEEEE------eeCChhHHHHHHHHHHHhhh
Q psy788 90 DEHKHLGENLIRYC------FFKKDETLREASSILQTWRN 123 (126)
Q Consensus 90 ~~~~~~~~~~~Rl~------~~~~~e~i~~~~~~l~~~~~ 123 (126)
.. ...+..+|++ .+..++++++..+.|.++++
T Consensus 381 ~~--~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~ 418 (475)
T PLN03226 381 SS--ALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVT 418 (475)
T ss_pred cc--cCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 11 1234568883 23366777777777766654
No 210
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=92.08 E-value=3.3 Score=32.35 Aligned_cols=98 Identities=15% Similarity=0.147 Sum_probs=60.8
Q ss_pred HHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe-CCCCccc-Ccc---c-CC
Q psy788 22 EILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI-PPSAFYS-DEH---K-HL 95 (126)
Q Consensus 22 ~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~-pg~~f~~-~~~---~-~~ 95 (126)
.+|.+.|.+.|+++..|.||--++++.......++ ..+ .....++-+|..+.||.-+ -|+.... +++ + .+
T Consensus 326 ~~l~~~L~~~Gvpv~~p~ggH~v~vda~~~lph~~---~~~-~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~ 401 (460)
T PRK13237 326 RYLGEKLLAAGVPIVEPVGGHAVFLDARRFLPHLP---QDQ-FPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYP 401 (460)
T ss_pred HHHHHHHHHCCCceecCCCceEEEEEhHHhCCCCC---ccc-ChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCC
Confidence 45666676669999999999888898765321111 011 1367888888889999754 4443222 211 1 11
Q ss_pred CCCeEEEEeeC---ChhHHHHHHHHHHHhhh
Q psy788 96 GENLIRYCFFK---KDETLREASSILQTWRN 123 (126)
Q Consensus 96 ~~~~~Rl~~~~---~~e~i~~~~~~l~~~~~ 123 (126)
.-..+|+++.+ +.+.++-..+.|..+.+
T Consensus 402 ~~el~rlaiprr~yt~~h~~~v~~~~~~~~~ 432 (460)
T PRK13237 402 KLELVRLTIPRRVYTYAHMDVVADSVIKLYK 432 (460)
T ss_pred ccceeeeccccccccHHHHHHHHHHHHHHHH
Confidence 13689999985 55666666666665544
No 211
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=90.69 E-value=5.1 Score=29.23 Aligned_cols=98 Identities=10% Similarity=-0.010 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCc-----ceEEEEeeCCc-ccccccCCCCCchhhHHHHHHHHHhCCeeE
Q psy788 9 YFYTISEELRPKREILADALDKA-GMVPVIPDG-----GYFMVADWTQL-RPMLRLDTESDKYEDFKFAKWMTKNVKLQG 81 (126)
Q Consensus 9 ~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~g-----g~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v 81 (126)
.++.+.++.+++.+.+.+.|.++ |+++..+.. ...+.+.++.. + . +..++.+.| .++||.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~v~~~L-~~~gI~~ 296 (352)
T cd00616 229 KLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAG--E---------SRDELIEAL-KEAGIET 296 (352)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCC--C---------CHHHHHHHH-HHCCCCe
Confidence 34556666677777788888776 666543321 23333445420 1 1 356788886 5779965
Q ss_pred eCCCCcccCcc---------cCC-------CCCeEEEEeeC--ChhHHHHHHHHH
Q psy788 82 IPPSAFYSDEH---------KHL-------GENLIRYCFFK--KDETLREASSIL 118 (126)
Q Consensus 82 ~pg~~f~~~~~---------~~~-------~~~~~Rl~~~~--~~e~i~~~~~~l 118 (126)
........... ... ..+.+|+++.. ++++++.-++.|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l 351 (352)
T cd00616 297 RVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEAL 351 (352)
T ss_pred eeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHh
Confidence 43211100000 000 12689999885 777777766655
No 212
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=90.32 E-value=4 Score=31.59 Aligned_cols=44 Identities=16% Similarity=0.127 Sum_probs=32.3
Q ss_pred HHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788 68 KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN 123 (126)
Q Consensus 68 ~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~ 123 (126)
.|...|+ ++||.+.|+ .| +.++ +|.+.+++.|+..++.+.++++
T Consensus 384 ~~~~~~l-~~GV~l~ps-~~---------ea~f-lS~ahte~di~~~~~a~~~~~~ 427 (432)
T COG0001 384 KFFHHLL-NRGVYLAPS-QF---------EAGF-LSTAHTEEDIDRTLEAADEAFK 427 (432)
T ss_pred HHHHHHH-hCCcccCCc-cc---------ccee-eecccCHHHHHHHHHHHHHHHH
Confidence 4666655 889999984 23 3445 7888888999998888876655
No 213
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=89.32 E-value=8.9 Score=29.95 Aligned_cols=98 Identities=14% Similarity=0.157 Sum_probs=61.7
Q ss_pred HHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeC-CCCcccCc-c---c-CC
Q psy788 22 EILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIP-PSAFYSDE-H---K-HL 95 (126)
Q Consensus 22 ~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p-g~~f~~~~-~---~-~~ 95 (126)
.+|.+.|.+.|+++..|.||=-++++.......++ ..+ .....++-+|..+.||.-+- |+.....+ + + .+
T Consensus 319 ~~La~~L~~~Gvpv~~p~ggh~V~vda~~~lph~~---~~~-~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~ 394 (450)
T TIGR02618 319 RYLGDKLKAAGVPIVEPVGGHAVFLDARRFLPHIP---QDQ-FPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRP 394 (450)
T ss_pred HHHHHHHHHCCCcccCCCCcceEEEEhHHhCCCCC---hhh-ChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCC
Confidence 35677777779999889999888898865321111 111 13678888888899997544 55433211 1 1 11
Q ss_pred CCCeEEEEeeC---ChhHHHHHHHHHHHhhh
Q psy788 96 GENLIRYCFFK---KDETLREASSILQTWRN 123 (126)
Q Consensus 96 ~~~~~Rl~~~~---~~e~i~~~~~~l~~~~~ 123 (126)
.-..+|+++.+ +.+.++-..+.|..+.+
T Consensus 395 ~~el~rlaiprr~yt~~h~~~v~~~~~~~~~ 425 (450)
T TIGR02618 395 KLELVRLTIPRRVYTYAHMDVVADGIIKLYK 425 (450)
T ss_pred ccceeeeccccccccHhHHHHHHHHHHHHHh
Confidence 13689999985 55666666676665544
No 214
>PRK07678 aminotransferase; Validated
Probab=88.76 E-value=9.5 Score=29.55 Aligned_cols=52 Identities=12% Similarity=-0.089 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNK 124 (126)
Q Consensus 67 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~ 124 (126)
..+...+ .++||.+.|....... ..+.+|++-.. ++++|+++++.|.+++++
T Consensus 396 ~~i~~~l-~~~Gv~~~~~g~~v~~-----~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~ 449 (451)
T PRK07678 396 ASVVAAC-KEKGLIIGKNGDTVAG-----YNNVLTLSPPLVISSEEIAFIVGTLKTALER 449 (451)
T ss_pred HHHHHHH-HHCCcEEeecCccccC-----CCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 4566665 4889998763211111 24678887654 899999999999988763
No 215
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=88.27 E-value=11 Score=29.52 Aligned_cols=51 Identities=10% Similarity=0.107 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 66 ~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
..++++.|. +.|+.+. ..++.. ...+.+|++++. +.++|+..++.|.++.+
T Consensus 395 ~~~v~~~L~-~~Gi~~~--~~~~p~----~~~~~l~is~~e~~t~edid~l~~~l~~i~~ 447 (481)
T PRK04366 395 TLDIAKRLL-DYGFHPP--TIYFPL----IVPEALMIEPTETESKETLDAFIAAMKQIAE 447 (481)
T ss_pred HHHHHHHHH-HCCccCC--cccccc----ccCCeEEEcccCCCCHHHHHHHHHHHHHHHH
Confidence 567888864 7888744 222221 125689999974 77888888888776644
No 216
>PRK06541 hypothetical protein; Provisional
Probab=88.18 E-value=10 Score=29.46 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCcc---cCCCcceEEEEeeCCcccccccCCCCCchh---hHHHHHHHHHhCCeeEeCC
Q psy788 12 TISEELRPKREILADALDKA-GMVP---VIPDGGYFMVADWTQLRPMLRLDTESDKYE---DFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 12 ~~r~~~~~r~~~l~~~l~~~-g~~~---~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~gV~v~pg 84 (126)
.+....+++.+.+.+.|+++ ...+ .... |+++-+++...... ..+......+ ...+...| .++||.+.|.
T Consensus 346 ~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~-Gl~~~ie~~~~~~~-~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~ 422 (460)
T PRK06541 346 GLLDHVRDNEPAFRATLEKLLDLPIVGDVRGD-GYFYGIELVKDKAT-KETFTDDESERLLRGFLSPAL-FEAGLYCRAD 422 (460)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec-ceEEEEEEecCccc-ccCCcchhhhhhHHHHHHHHH-HhCCeEEEec
Confidence 45667778888888888765 2222 3344 44556776321000 0000000000 12455665 4889999872
Q ss_pred CCcccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788 85 SAFYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN 123 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~ 123 (126)
. . +.+.+||+-. .+++++++++++|.+++.
T Consensus 423 ~-~--------g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~ 454 (460)
T PRK06541 423 D-R--------GDPVVQLAPPLISGQEEFDEIEQILRSVLT 454 (460)
T ss_pred C-C--------CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 1 1 2467899887 489999999999988775
No 217
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=87.96 E-value=10 Score=28.95 Aligned_cols=45 Identities=11% Similarity=-0.031 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788 66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN 123 (126)
Q Consensus 66 ~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~ 123 (126)
...+...| .++||.+.|. .+.+|++.. .++++|+..++.|.++++
T Consensus 375 ~~~l~~~l-~~~Gv~v~~~------------~~~lR~~p~l~~t~edId~~v~~l~~al~ 421 (423)
T PRK05964 375 GPALRAFA-LERGVLLRPL------------GNTIYLMPPYIITAEELDRITDAIVEVAD 421 (423)
T ss_pred HHHHHHHH-HHCCeEEEec------------CCEEEEeCCcccCHHHHHHHHHHHHHHHh
Confidence 44677776 4889998762 135899866 589999999999988775
No 218
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=87.58 E-value=9.5 Score=28.20 Aligned_cols=87 Identities=10% Similarity=0.121 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhC-CCccc---CCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCC
Q psy788 20 KREILADALDKA-GMVPV---IPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHL 95 (126)
Q Consensus 20 r~~~l~~~l~~~-g~~~~---~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~ 95 (126)
+.+.+.+.|.++ |+++. .+... ++.++.+... .. ......+..++.+.|. ++||.+. + ..
T Consensus 269 ~~~~l~~~L~~l~g~~v~~~~~~~~n-~~~~~~~~~~--~~--~~~~~~~~~~~~~~L~-~~gI~~~----~-~~----- 332 (361)
T cd06452 269 KARWFVAELEKIEGIKQLGEKPKNHD-LMFFETPSFD--EI--AKKHKRRGYFLYSELK-KRGIHGI----K-PG----- 332 (361)
T ss_pred HHHHHHHHHhcCCCeEEECCCCCCCc-eEEEEcCCcc--hh--hhhccccchhHHHHHH-HcCceEE----c-CC-----
Confidence 346778888887 77764 22333 4445554210 00 0000001336888874 6799842 1 21
Q ss_pred CCCeEEEEee-CChhHHHHHHHHHHHhh
Q psy788 96 GENLIRYCFF-KKDETLREASSILQTWR 122 (126)
Q Consensus 96 ~~~~~Rl~~~-~~~e~i~~~~~~l~~~~ 122 (126)
..+++|++.. .++++++..++.|.++.
T Consensus 333 ~~~~~ri~~~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 333 LTRYFKLSTYGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred CceEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 2468999983 37778888888887543
No 219
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=87.43 E-value=11 Score=28.79 Aligned_cols=94 Identities=14% Similarity=0.046 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceE----EEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 10 FYTISEELRPKREILADALDKAGMVPVIPDGGYF----MVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
++..-+++++..+.+.+.+...|++... +-+++ ..+..|.. + ++.++...++++.|+.+.+|.
T Consensus 263 le~r~~RH~~~~~a~r~~~~alGl~~~~-~~~~~s~tvta~~~P~g---~---------~~~~~~~~~~~~~g~~i~gg~ 329 (383)
T COG0075 263 LEARIARHRRLAEALRAGLEALGLELFA-DPERRSPTVTAIKVPEG---V---------DDKKVRRALLKEYGVEIAGGQ 329 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccc-CcccCCCceEEEECCCC---C---------CcHHHHHHHHHhCCEEecccc
Confidence 5667788888888999999888877644 22222 22334432 1 233333466777799998875
Q ss_pred CcccCcccCCCCCeEEEEe-eC-ChhHHHHHHHHHHHhhh
Q psy788 86 AFYSDEHKHLGENLIRYCF-FK-KDETLREASSILQTWRN 123 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~-~~-~~e~i~~~~~~l~~~~~ 123 (126)
.-. ....|||+. +. ..+.+..++..|..+++
T Consensus 330 ~~l-------~gkifRIGhMG~~~~~dv~~~l~ale~~L~ 362 (383)
T COG0075 330 GPL-------KGKIFRIGHMGNVRPEDVLAALAALEAALR 362 (383)
T ss_pred ccc-------CccEEEEecCccCCHHHHHHHHHHHHHHHH
Confidence 332 246899976 43 77888889888887776
No 220
>KOG1359|consensus
Probab=86.67 E-value=11 Score=28.08 Aligned_cols=53 Identities=15% Similarity=0.003 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 66 ~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
...++++|+ +.|+.|.-.+..-.. +++..+|+.++. +++.++..++.+.+..+
T Consensus 357 A~~~ad~lL-k~Gi~Vigfs~PvVP----~gkariRVqiSAaHt~edid~~i~Af~~vgr 411 (417)
T KOG1359|consen 357 ASKMADELL-KRGIYVIGFSYPVVP----KGKARIRVQISAAHTEEDIDRLIEAFSEVGR 411 (417)
T ss_pred HHHHHHHHH-hcCceEEeecCCcCC----CCceEEEEEEehhcCHHHHHHHHHHHHHHHH
Confidence 567889987 789999986654432 366778888874 88999999998877654
No 221
>KOG1360|consensus
Probab=85.83 E-value=15 Score=28.64 Aligned_cols=94 Identities=5% Similarity=-0.049 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788 11 YTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD 90 (126)
Q Consensus 11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~ 90 (126)
+.+|+.-+++-.++.+.|.+.|+++.+...- .+=+.+.+.. -..+.++.|+.+.+|.|..-.+....
T Consensus 426 ~~lR~~hqrnv~~~kq~l~~~GiPVi~~pSH-IiPv~vgda~------------l~~~~sd~Li~~h~iYvQaINyPTV~ 492 (570)
T KOG1360|consen 426 RVLRRQHQRNVKYVKQLLMELGIPVIPNPSH-IIPVRVGDAA------------LAKQASDILISKHNIYVQAINYPTVA 492 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccCCCcc-eeeeeccCHH------------HHHHHHHHHHHhcCeEEEeccCCccc
Confidence 4567777888889999999999988654443 2223343211 25578888999999999987654433
Q ss_pred cccCCCCCeEEEEeeC--ChhHHHHHHHHHHHh
Q psy788 91 EHKHLGENLIRYCFFK--KDETLREASSILQTW 121 (126)
Q Consensus 91 ~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~ 121 (126)
.++..+||+=+. +++.++..++.|...
T Consensus 493 ----rG~E~LRiaPTP~HT~~mm~~lv~~l~~v 521 (570)
T KOG1360|consen 493 ----RGTERLRIAPTPHHTPQMMNILVNALLDV 521 (570)
T ss_pred ----ccceeeecCCCCCCCHHHHHHHHHHHHHH
Confidence 356778887663 667777777666544
No 222
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=85.76 E-value=14 Score=28.44 Aligned_cols=102 Identities=11% Similarity=-0.038 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcccccc--cCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 12 TISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLR--LDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 12 ~~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
.+...++++.+.+.+.|+++ ++....-.-|+++-+++......-+ .+...+......+...+ .++||.+.|..
T Consensus 325 ~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Gvl~~~~~ 403 (442)
T TIGR00709 325 NLAQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGAC-FENGLLLETGG 403 (442)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHH-HHCCeEEeecC
Confidence 34456666666676666653 2222222346677787743210000 00000000123455654 48899987632
Q ss_pred CcccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788 86 AFYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN 123 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~ 123 (126)
. ..+.+|+.-+ .++++++++++++.+++.
T Consensus 404 ~---------~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~ 434 (442)
T TIGR00709 404 R---------EGEVFRLLCPITIDQEECEEGISRFKQAVE 434 (442)
T ss_pred C---------CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 1 1356776555 489999999999988765
No 223
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=85.63 E-value=14 Score=28.22 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHhC----CCc-ccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 13 ISEELRPKREILADALDKA----GMV-PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 13 ~r~~~~~r~~~l~~~l~~~----g~~-~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
+.+..++.-+.+.+.|+++ ++. ...+. |+++-+++.... . .....+.+.+ .++||.+.|.
T Consensus 308 l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~-Gl~~~i~~~~~~---~-------~~a~~i~~~l-~~~Gvlv~~~--- 372 (408)
T PRK04612 308 IAANVARQSAALRAGLEALNAEFGVFAQVRGR-GLMLGAVLAPAH---A-------GQAGAILDLA-AEHGLLLLQA--- 372 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeeeeecc-ceEEEEEecCch---h-------hHHHHHHHHH-HHCCeEEeeC---
Confidence 3444444455555555443 221 22333 566667764210 0 0245677775 5889999762
Q ss_pred ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788 88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN 123 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~ 123 (126)
+++.+|+.-. .+++++++++++|.+.+.
T Consensus 373 --------g~~~lRl~Ppl~it~eeid~~l~~l~~~l~ 402 (408)
T PRK04612 373 --------GPDVLRFVPALNLTDAELADGLARLRLALA 402 (408)
T ss_pred --------CCCEEEEcCCccCCHHHHHHHHHHHHHHHH
Confidence 2367898754 488999999999988775
No 224
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=85.47 E-value=3.6 Score=30.88 Aligned_cols=89 Identities=13% Similarity=0.067 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-C-Ccc-cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHH---------HHHHhC
Q psy788 10 FYTISEELRPKREILADALDKA-G-MVP-VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAK---------WMTKNV 77 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~-g-~~~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~~ 77 (126)
+....++-.++...+.++|+++ . ..+ .+|.||++.+.- ... + ....|.. .|-...
T Consensus 247 L~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf~~-~~~----~--------~~~~f~~~l~~~~~~~slG~~~ 313 (364)
T PRK07269 247 LSLRMERSTANAQEVVAFLKKSPAVKEVLYTGKGGMISFKV-ADE----T--------RIPHILNSLKVFTFAESLGGVE 313 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEEEE-CCH----H--------HHHHHHHhCCcceEccCCCCcC
Confidence 4555566677778888999887 3 334 478888766553 211 0 1222322 222234
Q ss_pred CeeEeCCCCcccC--cc----cCCCCCeEEEEeeC-ChhHH
Q psy788 78 KLQGIPPSAFYSD--EH----KHLGENLIRYCFFK-KDETL 111 (126)
Q Consensus 78 gV~v~pg~~f~~~--~~----~~~~~~~~Rl~~~~-~~e~i 111 (126)
.+.+.|++.+... .+ ....++.+|||++. +.++|
T Consensus 314 sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsvGlE~~~dl 354 (364)
T PRK07269 314 SLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIGIEDARDL 354 (364)
T ss_pred eEeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHH
Confidence 5667787655331 10 01236799999998 44433
No 225
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=84.33 E-value=16 Score=27.74 Aligned_cols=98 Identities=10% Similarity=0.022 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CcccCC--C--cceEEEEeeCCcccc-cccCCCCCc-hh-hHHHHHHHHHhCCeeE
Q psy788 10 FYTISEELRPKREILADALDKAG-MVPVIP--D--GGYFMVADWTQLRPM-LRLDTESDK-YE-DFKFAKWMTKNVKLQG 81 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~g-~~~~~p--~--gg~~~~i~~~~~~~~-~~~~~~~~~-~~-~~~~~~~l~~~~gV~v 81 (126)
++.+.++++++.+.+.+++++.| +.+... + +-.-..+.++..... .++ +. -+ ..+|.+.| .+.||.+
T Consensus 261 le~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~----~~~~~~~~~~~~~l-~~~gi~i 335 (374)
T TIGR01365 261 LKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDE----DAQADFAKELISTL-EKEGVAY 335 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCcccccccc----chhhHHHHHHHHHH-HHCCEEE
Confidence 77888899999999999999887 555432 1 232344455332100 000 00 00 34676665 5779999
Q ss_pred eCCCCcccCcccCCCCCeEEEEe-eC-ChhHHHHHHHHHH
Q psy788 82 IPPSAFYSDEHKHLGENLIRYCF-FK-KDETLREASSILQ 119 (126)
Q Consensus 82 ~pg~~f~~~~~~~~~~~~~Rl~~-~~-~~e~i~~~~~~l~ 119 (126)
.||. +.. ....|||+- +. +.++++..++.|.
T Consensus 336 ~~G~--~~~-----~~~~fRIg~~G~i~~~di~~l~~~l~ 368 (374)
T TIGR01365 336 DIGS--YRD-----APSGLRIWCGATVEKSDLECLCPWLD 368 (374)
T ss_pred eccc--ccc-----CCCceEEecCCcCCHHHHHHHHHHHH
Confidence 9875 322 236899965 44 7788887777663
No 226
>PLN02724 Molybdenum cofactor sulfurase
Probab=84.27 E-value=23 Score=29.63 Aligned_cols=26 Identities=12% Similarity=-0.007 Sum_probs=21.3
Q ss_pred CCeEEEEeeC--ChhHHHHHHHHHHHhh
Q psy788 97 ENLIRYCFFK--KDETLREASSILQTWR 122 (126)
Q Consensus 97 ~~~~Rl~~~~--~~e~i~~~~~~l~~~~ 122 (126)
.+.+|+||+. +.++++..++-|.+..
T Consensus 459 ~G~vRvS~g~ynt~eDvd~lv~~l~~~~ 486 (805)
T PLN02724 459 TGAVRVSFGYMSTFEDCQKFIDFIISSF 486 (805)
T ss_pred cceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence 3889999995 8888998888887643
No 227
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=84.17 E-value=17 Score=27.95 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 9 YFYTISEELRPKREILADALDKAGMVPVI-PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~-p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
..+...+..-+|-+.|.+.|.+.|+++.. .--+-.+|+++...+ + +..+..+. +.+.||.+-.-...
T Consensus 297 ~fk~Ya~qVv~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~--~---------~g~~a~~~-Le~~gI~vnkn~iP 364 (399)
T PF00464_consen 297 EFKEYAKQVVKNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFG--I---------DGKEAEKA-LEEAGIIVNKNTIP 364 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGT--S----------HHHHHHH-HHHTTEE-EEE--T
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEECCCCCCeEEEEecccc--c---------chHHHHHH-HHhcCeeecccccC
Confidence 34667777778888999999988888743 223447788886532 1 24455555 67999998653333
Q ss_pred ccCcccCCCCCeEEEEee
Q psy788 88 YSDEHKHLGENLIRYCFF 105 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~ 105 (126)
+... ...+..+||+-.
T Consensus 365 ~d~~--~~~~sGlRlGT~ 380 (399)
T PF00464_consen 365 GDRS--PFVPSGLRLGTP 380 (399)
T ss_dssp TTST--TTT-SEEEEESH
T ss_pred CCCC--CCCCCEEEECCH
Confidence 3211 113578999765
No 228
>PLN02242 methionine gamma-lyase
Probab=83.92 E-value=17 Score=27.86 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Q psy788 9 YFYTISEELRPKREILADALDKAGMVPVIP 38 (126)
Q Consensus 9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p 38 (126)
++....+++.+|++.+.+.|+++++++..|
T Consensus 275 tl~~r~~~~~~~a~~la~~L~~~~~~V~yP 304 (418)
T PLN02242 275 HLSLRMKEHCRRAMEYAKRMKELGLKVIYP 304 (418)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCEEECC
Confidence 455566799999999999999886555433
No 229
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=83.59 E-value=18 Score=27.79 Aligned_cols=85 Identities=14% Similarity=-0.042 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHhCCC-cccC--CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788 14 SEELRPKREILADALDKAGM-VPVI--PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD 90 (126)
Q Consensus 14 r~~~~~r~~~l~~~l~~~g~-~~~~--p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~ 90 (126)
++..+++-+.+.+.|++++. .... -.-|.++-+.+.... ....+...| .+.||.+.|. +
T Consensus 336 ~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~~------------~~~~~~~~l-~~~Gv~~~~~---~-- 397 (427)
T TIGR00508 336 QKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKPV------------NVEELQKKF-VEQGVWIRPF---G-- 397 (427)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCcc------------CHHHHHHHH-HHCCeEEEec---C--
Confidence 34555555556666655421 1111 112556667764321 245677776 4889998652 1
Q ss_pred cccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788 91 EHKHLGENLIRYCFF--KKDETLREASSILQTWRN 123 (126)
Q Consensus 91 ~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~ 123 (126)
+.+|++.. .++++|++.++.|.+.+.
T Consensus 398 -------~~l~~~ppl~~t~~~id~~~~~l~~~l~ 425 (427)
T TIGR00508 398 -------KLIYVMPPYIITTEQLQKLTAALIEALH 425 (427)
T ss_pred -------CEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 24778665 588999999999988875
No 230
>PLN02880 tyrosine decarboxylase
Probab=82.88 E-value=21 Score=28.07 Aligned_cols=91 Identities=8% Similarity=0.011 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhC-CCcc-cCCCcceEEEEeeCCcccccccCCCCCc-hhhHHHHHHHHHhCCeeEeCCCCcccCcccCC
Q psy788 19 PKREILADALDKA-GMVP-VIPDGGYFMVADWTQLRPMLRLDTESDK-YEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHL 95 (126)
Q Consensus 19 ~r~~~l~~~l~~~-g~~~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~ 95 (126)
+..+.+.+.|.+. ++.+ .+|+.++.+ .+++... .+ .... .-..++.++|..+..+.+.+ +.+.
T Consensus 387 ~lA~~~~~~l~~~~~~el~~~~~~~iv~-Fr~~~~~--~~---~~~~~~~n~~l~~~l~~~g~~~v~~-t~~~------- 452 (490)
T PLN02880 387 KLAKEFEQLVAQDSRFEVVTPRIFSLVC-FRLVPPK--NN---EDNGNKLNHDLLDAVNSSGKIFISH-TVLS------- 452 (490)
T ss_pred HHHHHHHHHHhcCCCEEEecCCceEEEE-EEEeCCC--CC---hhhHHHHHHHHHHHHHhCCCEEEEE-EEEC-------
Confidence 5555667777665 6776 456666444 3443211 00 0000 00124555654444454444 3332
Q ss_pred CCCeEEEEeeC---ChhHHHHHHHHHHHhhh
Q psy788 96 GENLIRYCFFK---KDETLREASSILQTWRN 123 (126)
Q Consensus 96 ~~~~~Rl~~~~---~~e~i~~~~~~l~~~~~ 123 (126)
+..++|+++.. +.+.++..++.|.+...
T Consensus 453 g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~ 483 (490)
T PLN02880 453 GKYVLRFAVGAPLTEERHVTAAWKVLQDEAS 483 (490)
T ss_pred CEEEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 46799999974 55788888888766543
No 231
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=82.87 E-value=17 Score=27.00 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCc-c-cCC--CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 10 FYTISEELRPKREILADALDKA-GMV-P-VIP--DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~-g~~-~-~~p--~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
++.+.+++++..+++.+.|.++ |+. . ..| .++.-+-+.++.. . .+.++... +.+.|+.+.+|
T Consensus 257 ~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~--~----------l~~~~~~~-~~r~G~~~~~~ 323 (355)
T cd00611 257 VEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKE--E----------LEKEFLKE-AEAAGMIGLKG 323 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCCh--h----------hhHHHHHH-HHHCCCcccCC
Confidence 6777888899999999999988 752 2 111 2222233333321 0 12344344 35788875554
Q ss_pred CCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHh
Q psy788 85 SAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTW 121 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~ 121 (126)
.. . .+.+|+|+.. +.++++..++.|.++
T Consensus 324 ~~---~------~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 324 HR---S------VGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred Cc---c------cCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 32 1 3679999986 888888888887764
No 232
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=82.82 E-value=20 Score=27.66 Aligned_cols=88 Identities=18% Similarity=0.198 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHhC--CCc-ccCC-CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788 13 ISEELRPKREILADALDKA--GMV-PVIP-DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY 88 (126)
Q Consensus 13 ~r~~~~~r~~~l~~~l~~~--g~~-~~~p-~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~ 88 (126)
+-+.-+++-+++.+.|+++ .+. +..- .=|+++=+++.... ...++++.+ .++||.+.+.
T Consensus 305 ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiGiel~~~~------------~a~~~~~~~-~~~gvL~~~a---- 367 (404)
T COG4992 305 LLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPY------------RARDIVRAL-REEGVLVLPA---- 367 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCceeeeecceeEEEEEecCcc------------cHHHHHHHH-HHCCeEEecC----
Confidence 3444556666777777765 233 2222 33778888886521 256788875 5899998872
Q ss_pred cCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788 89 SDEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK 124 (126)
Q Consensus 89 ~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~ 124 (126)
+.+-+||.=. -+++++++++++|.+++.+
T Consensus 368 -------~~~ViR~~PpL~i~~eei~~~~~~l~~~l~~ 398 (404)
T COG4992 368 -------GPNVIRFLPPLVITEEEIDEALDALERALAA 398 (404)
T ss_pred -------CCCeEEecCCccCCHHHHHHHHHHHHHHHHH
Confidence 3457888544 4889999999999988874
No 233
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=80.90 E-value=24 Score=27.46 Aligned_cols=88 Identities=13% Similarity=0.063 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHhC--CCc--cc-CCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788 14 SEELRPKREILADALDKA--GMV--PV-IPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY 88 (126)
Q Consensus 14 r~~~~~r~~~l~~~l~~~--g~~--~~-~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~ 88 (126)
....++.-+.+.+.|+++ ..+ +. .-.-|+++-+++.... ....+...|+ ++||.+.+..
T Consensus 356 ~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~~~------------~~~~i~~~l~-~~Gvl~~~~~--- 419 (459)
T PRK11522 356 PAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE------------IGYNFASEMF-RQRVLVAGTL--- 419 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEEecCch------------HHHHHHHHHH-HCCeEEEecC---
Confidence 344444455555555543 122 11 1133677778876420 2446777764 7899987631
Q ss_pred cCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788 89 SDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN 123 (126)
Q Consensus 89 ~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~ 123 (126)
. ..+.+|+..+ .+++++++.+++|.+++.
T Consensus 420 ~------~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~ 450 (459)
T PRK11522 420 N------NAKTIRIEPPLTLTIEQCEQVLKAARKALA 450 (459)
T ss_pred C------CCCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 1 2467888766 388999999999987765
No 234
>PLN02271 serine hydroxymethyltransferase
Probab=80.40 E-value=29 Score=28.09 Aligned_cols=98 Identities=12% Similarity=0.062 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccC-CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788 11 YTISEELRPKREILADALDKAGMVPVI-PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS 89 (126)
Q Consensus 11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~-p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~ 89 (126)
+...+...+|-+.|.+.|.+.|+++.. .--.-.+|+++...+ + +... ++..+...||.+.--..++.
T Consensus 434 k~Ya~QVv~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g--~---------~G~~-ae~~Le~~~I~~Nkn~iP~d 501 (586)
T PLN02271 434 KAYMQQVKKNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLG--L---------TGKN-YEKVCEMCHITLNKTAIFGD 501 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeEeeCCCCcceeeecCcccC--C---------CHHH-HHHHHHHcCeEeccccCCCC
Confidence 667777788888999999888888643 222456778886532 1 2333 34456788998765554443
Q ss_pred CcccCCCCCeEEEEee------CChhHHHHHHHHHHHhh
Q psy788 90 DEHKHLGENLIRYCFF------KKDETLREASSILQTWR 122 (126)
Q Consensus 90 ~~~~~~~~~~~Rl~~~------~~~e~i~~~~~~l~~~~ 122 (126)
.. ...++.+||+-. ..++++++-.+.|.+++
T Consensus 502 ~~--~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~ 538 (586)
T PLN02271 502 NG--TISPGGVRIGTPAMTSRGCLESDFETIADFLLRAA 538 (586)
T ss_pred CC--CCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 21 124678999643 24455555555554443
No 235
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=79.85 E-value=26 Score=27.12 Aligned_cols=45 Identities=20% Similarity=0.034 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEE--EeeCChhHHHHHHHHHHHhhh
Q psy788 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRY--CFFKKDETLREASSILQTWRN 123 (126)
Q Consensus 67 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl--~~~~~~e~i~~~~~~l~~~~~ 123 (126)
..+...+ .++||.+.+. . .+.+|+ ++..+++++++++++|.++++
T Consensus 379 ~~~~~~l-~~~Gi~~~~~---~--------~~~lr~~P~l~~t~~~id~~~~~l~~~l~ 425 (443)
T PRK08360 379 AKVVWRA-WELGLIVTFF---S--------GNVLRIQPPLTIEKEVLDEGLDILEEAIE 425 (443)
T ss_pred HHHHHHH-HHCCeEEeec---C--------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 4566765 5889987642 1 246888 555699999999999988765
No 236
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=78.74 E-value=29 Score=26.97 Aligned_cols=62 Identities=13% Similarity=-0.005 Sum_probs=42.1
Q ss_pred CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEee--CChhHHHHHHH
Q psy788 39 DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFF--KKDETLREASS 116 (126)
Q Consensus 39 ~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~ 116 (126)
.-|+++-+++.... ....+...|. ++||.+.+.. + +.+.+||.-. .++++++++++
T Consensus 379 G~Gl~~giel~~~~------------~~~~i~~~l~-~~Gvl~~~~~-~--------~~~~lr~~Ppl~~t~~~id~~~~ 436 (442)
T TIGR03372 379 GKGLLMAIEFRDNE------------IGYAFAKELF-QQNILVAGTL-N--------NAKSIRIEPPLTITIEQCALVIK 436 (442)
T ss_pred cceEEEEEEeCChH------------HHHHHHHHHH-HCCcEEeecC-C--------CCCEEEEECCcccCHHHHHHHHH
Confidence 34778888886421 2456777764 7899986531 1 1356887665 48999999999
Q ss_pred HHHHhh
Q psy788 117 ILQTWR 122 (126)
Q Consensus 117 ~l~~~~ 122 (126)
+|.+++
T Consensus 437 ~l~~~~ 442 (442)
T TIGR03372 437 AAKDAL 442 (442)
T ss_pred HHHHhC
Confidence 998753
No 237
>PRK05367 glycine dehydrogenase; Provisional
Probab=78.57 E-value=35 Score=29.36 Aligned_cols=86 Identities=12% Similarity=0.069 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
.-++++.++....-+++.+.|...|+++..+ .+|=.+.+.... +..++.++|. ++||.+. ..
T Consensus 350 ~Gl~~Ia~~~~~la~~l~~~L~~~G~~~~~~--~~f~~~~~~~~~------------~~~~i~~~l~-~~gi~~~---~~ 411 (954)
T PRK05367 350 EGLKAIARRVHRLAAILAAGLRALGLEVVHD--SFFDTLTVEVGG------------DAAAVLARAL-AAGINLR---RV 411 (954)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCcccCCC--CCCCeEEEeCCC------------CHHHHHHHHH-HCCceec---cc
Confidence 3467777778888888888887667775433 222222222110 3567888864 8888871 11
Q ss_pred ccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHH
Q psy788 88 YSDEHKHLGENLIRYCFFK--KDETLREASSILQ 119 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~ 119 (126)
..+.+|+|+.. ++++|+..++.|.
T Consensus 412 --------~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 412 --------DDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred --------cCCEEEEEecccCCHHHHHHHHHHHc
Confidence 13569999984 7788888888775
No 238
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=78.40 E-value=30 Score=27.00 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEE--EeeCChhHHHHHHHHHHHhhh
Q psy788 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRY--CFFKKDETLREASSILQTWRN 123 (126)
Q Consensus 67 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl--~~~~~~e~i~~~~~~l~~~~~ 123 (126)
..+...++ ++||.+.|+..+ .+.+|+ ++..++++++++++++.+++.
T Consensus 411 ~~~~~~~~-~~Gll~~~~g~~---------~~~l~~~Ppl~it~~eid~~~~~l~~~l~ 459 (464)
T PRK06938 411 SLIQRECL-RRGLILELGGRH---------GSVVRFLPPLIITAEQIDEVAEIFAEAVA 459 (464)
T ss_pred HHHHHHHH-HCCeEEeecCCC---------CCEEEEECCCccCHHHHHHHHHHHHHHHH
Confidence 35666654 899998774222 245777 455589999999999988775
No 239
>PLN02651 cysteine desulfurase
Probab=77.65 E-value=22 Score=26.30 Aligned_cols=84 Identities=15% Similarity=0.149 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh-C-CCcccCC---C---cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe
Q psy788 11 YTISEELRPKREILADALDK-A-GMVPVIP---D---GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI 82 (126)
Q Consensus 11 ~~~r~~~~~r~~~l~~~l~~-~-g~~~~~p---~---gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~ 82 (126)
+.++++.++-++.+.+.|.+ . ++++..| + .+ .+-+.++. . +..+++..|. + |.+.
T Consensus 258 ~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~-i~~~~~~~----~---------~~~~~~~~L~-~--i~v~ 320 (364)
T PLN02651 258 DYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPG-TLNLSFAY----V---------EGESLLMGLK-E--VAVS 320 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCC-EEEEEeCC----C---------CHHHHHHHhC-C--EEEE
Confidence 55666677777777777764 3 6666543 1 22 23334442 1 3667888763 4 9998
Q ss_pred CCCCcccCc-------c--c---CCCCCeEEEEeeC--ChhHH
Q psy788 83 PPSAFYSDE-------H--K---HLGENLIRYCFFK--KDETL 111 (126)
Q Consensus 83 pg~~f~~~~-------~--~---~~~~~~~Rl~~~~--~~e~i 111 (126)
.|+...... . . ....+.+|+||+. +++++
T Consensus 321 ~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~di 363 (364)
T PLN02651 321 SGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEV 363 (364)
T ss_pred chhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHc
Confidence 887543210 0 0 0023789999995 55554
No 240
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=77.55 E-value=31 Score=26.69 Aligned_cols=87 Identities=17% Similarity=0.075 Sum_probs=48.1
Q ss_pred HHHHhCCCcccCCCcceEEEEeeCCccc-ccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEe
Q psy788 26 DALDKAGMVPVIPDGGYFMVADWTQLRP-MLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF 104 (126)
Q Consensus 26 ~~l~~~g~~~~~p~gg~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~ 104 (126)
+.+.+.|+.+....-|+++-+++..... ++......+......+...|. ++||.+.|+. +. . .+ ++.
T Consensus 341 ~~~~~~g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~-~~--------~-~~-ls~ 408 (433)
T PRK00615 341 EMIRSQGFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAF-SKGVYLSPSP-FE--------A-SF-LSS 408 (433)
T ss_pred HHHHHcCCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHH-HCCeeecCcc-cc--------c-cc-eec
Confidence 3333335444332256677787753210 000000001111346777764 7899988753 21 1 12 677
Q ss_pred eCChhHHHHHHHHHHHhhhc
Q psy788 105 FKKDETLREASSILQTWRNK 124 (126)
Q Consensus 105 ~~~~e~i~~~~~~l~~~~~~ 124 (126)
+.++++|+..++.+.+++++
T Consensus 409 ~ht~~did~~~~a~~~~~~~ 428 (433)
T PRK00615 409 AHSMENLDYAQNVLIDSLEK 428 (433)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 77899999999999988775
No 241
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=76.03 E-value=34 Score=26.40 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=41.4
Q ss_pred ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEE--EeeCChhHHHHHHHHH
Q psy788 41 GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRY--CFFKKDETLREASSIL 118 (126)
Q Consensus 41 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl--~~~~~~e~i~~~~~~l 118 (126)
|+++-+++.... ....+...+ .++||.+.|. + +.+|+ .+..+++++++++++|
T Consensus 363 Gl~~~ve~~~~~------------~~~~~~~~l-~~~Gl~~~~~-----------g-~~i~~~Ppl~it~~ei~~~~~~l 417 (428)
T PRK07986 363 GAIGVVETTRPV------------NMAALQRFF-VEQGVWIRPF-----------G-KLIYLMPPYIILPEQLQRLTAAV 417 (428)
T ss_pred ceEEEEEeCCcc------------cHHHHHHHH-HHCCcEEEec-----------C-CEEEEeCCCCCCHHHHHHHHHHH
Confidence 666667775321 244677775 5889988662 1 35777 5667899999999999
Q ss_pred HHhhhc
Q psy788 119 QTWRNK 124 (126)
Q Consensus 119 ~~~~~~ 124 (126)
.+++..
T Consensus 418 ~~~l~~ 423 (428)
T PRK07986 418 NRAVQD 423 (428)
T ss_pred HHHHhh
Confidence 988764
No 242
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=75.83 E-value=6.4 Score=20.87 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy788 7 KCYFYTISEELRPKREILADALD 29 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~ 29 (126)
+.-++.+|++|+.+|+=+.++++
T Consensus 25 E~Eieelr~RY~~KRqPIldAie 47 (49)
T PF11629_consen 25 EQEIEELRQRYQAKRQPILDAIE 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhccHHHHHh
Confidence 34578999999999999988875
No 243
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=75.08 E-value=23 Score=27.62 Aligned_cols=105 Identities=11% Similarity=0.046 Sum_probs=62.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhC----CCccc-CCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCe
Q psy788 5 PDKCYFYTISEELRPKREILADALDKA----GMVPV-IPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKL 79 (126)
Q Consensus 5 ~~~~~l~~~r~~~~~r~~~l~~~l~~~----g~~~~-~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV 79 (126)
.+.++++++.+.+.++++++.+.|+++ |-++. .|.--+-+-+.+.... + .+...+... +...+|
T Consensus 318 ~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~---~-------~~~~~~g~~-l~~~~v 386 (444)
T TIGR03531 318 LGSKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLK---G-------KDPTMLGSM-LYSRRV 386 (444)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccccc---c-------cCHHHHHHH-HHhCCC
Confidence 456789999999999999999999875 55543 3444555555555321 0 123445444 345455
Q ss_pred ---e-EeCCC----------CcccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHh
Q psy788 80 ---Q-GIPPS----------AFYSDEHKHLGENLIRYCFF--KKDETLREASSILQTW 121 (126)
Q Consensus 80 ---~-v~pg~----------~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~ 121 (126)
. |.||. .|+.+.+.. ...|+-++.+ .+.++++..+++|.+.
T Consensus 387 ~g~r~v~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~~~~g~~~~~~~~~~~~l~~~ 443 (444)
T TIGR03531 387 TGPRVVTNGDSKTVGGCEFKGYGSHTSNY-PCPYITAAAAIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred CCceeecCCCceEECCEEeecccccccCC-CchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence 2 45666 333321111 2346655443 4888999999999764
No 244
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=74.91 E-value=37 Score=26.29 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN 123 (126)
Q Consensus 67 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~ 123 (126)
..+...+ .++||.+.|. + .+.+|+... .++++++..++.+.++++
T Consensus 382 ~~~~~~~-~~~Gv~~~~~---~--------~~~lr~~p~l~~t~~~id~~~~~l~~~l~ 428 (445)
T PRK08593 382 LKICNYC-FEHGVVIIAV---A--------GNVLRFQPPLVITYEQLDTALNTIEQAFT 428 (445)
T ss_pred HHHHHHH-HHCCeEEecc---C--------CCEEEEECCCccCHHHHHHHHHHHHHHHH
Confidence 4577775 4789988652 1 245787665 489999999999988765
No 245
>PRK06917 hypothetical protein; Provisional
Probab=74.34 E-value=38 Score=26.23 Aligned_cols=52 Identities=15% Similarity=-0.029 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEe--eCChhHHHHHHHHHHHhhh
Q psy788 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF--FKKDETLREASSILQTWRN 123 (126)
Q Consensus 67 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~--~~~~e~i~~~~~~l~~~~~ 123 (126)
..+...+ .++||.+.|... .... ...+.+|++- ..+++++++++++|.++++
T Consensus 383 ~~~~~~~-~~~Gvl~~~~~~-~~~g---~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~ 436 (447)
T PRK06917 383 SELISVA-AKNGLLLYPAVA-GQDG---KEGDAVIIAPPMTITYSELDELLSIFAKSVE 436 (447)
T ss_pred HHHHHHH-HhCCcEEEeccc-ccCC---CCCCEEEEECCCcCCHHHHHHHHHHHHHHHH
Confidence 4566665 488999987421 1110 1236788864 4689999999999988775
No 246
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=73.95 E-value=39 Score=26.14 Aligned_cols=47 Identities=9% Similarity=0.028 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEE--eeCChhHHHHHHHHHHHhhhcC
Q psy788 66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYC--FFKKDETLREASSILQTWRNKN 125 (126)
Q Consensus 66 ~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~--~~~~~e~i~~~~~~l~~~~~~~ 125 (126)
..++...+ .++||.+.+. .+.+||+ +..+++++++.+++|.++++.-
T Consensus 393 ~~~~~~~l-~~~Gvl~~~~------------~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 393 AYEVFLKC-FEKGLMIRYT------------GDILALSPPLIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred HHHHHHHH-HHCCcEEEec------------CCEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence 34666765 4789998652 1358888 4458999999999999888653
No 247
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=73.77 E-value=45 Score=28.92 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788 10 FYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS 89 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~ 89 (126)
++++.++......++.+.|.+.|+++..+ -+|=.+.+... +..++.++| .++||.+.. ++
T Consensus 380 l~~Ia~ri~~la~~l~~~L~~~G~~~~~~--~~f~~vt~~~~-------------~~~~v~~~L-~~~gI~l~~---~~- 439 (993)
T PLN02414 380 LKTIAQRVHGLAGVFAAGLKKLGFQVQSL--PFFDTVKVKCS-------------DADAIADAA-AKVGINLRV---VD- 439 (993)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccCCC--CCcCeEEEecC-------------CHHHHHHHH-HHCCCeeEE---ec-
Confidence 66777777777778888887667666333 22222222211 246787886 488985443 11
Q ss_pred CcccCCCCCeEEEEeeC--ChhHHHHHHHHHH
Q psy788 90 DEHKHLGENLIRYCFFK--KDETLREASSILQ 119 (126)
Q Consensus 90 ~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~ 119 (126)
.+.+|+|+.. ++++|+.-++.|.
T Consensus 440 -------~~~lrvs~~e~~T~edId~L~~~l~ 464 (993)
T PLN02414 440 -------ANTVTVSFDETTTLEDVDKLFKVFA 464 (993)
T ss_pred -------CCeEEEEeeccCCHHHHHHHHHHHc
Confidence 2469999984 7788888887775
No 248
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=72.80 E-value=43 Score=26.09 Aligned_cols=47 Identities=11% Similarity=-0.138 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEe--eCChhHHHHHHHHHHHhhh
Q psy788 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF--FKKDETLREASSILQTWRN 123 (126)
Q Consensus 67 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~--~~~~e~i~~~~~~l~~~~~ 123 (126)
..+...+ .++||.+.|...+ .+.+|+.- ..+++++++++++|.++++
T Consensus 405 ~~~~~~~-~~~Gvl~~~~~~~---------~~~l~~~Ppl~it~~eid~~~~~l~~~l~ 453 (459)
T PRK06931 405 AAIQKAC-FENGLLLERGGRN---------GNVVRLLPPLLITQAECEEFIDRFEQALL 453 (459)
T ss_pred HHHHHHH-HHCCcEEeecCCC---------CCEEEEECCCCcCHHHHHHHHHHHHHHHH
Confidence 3466665 4889998774221 34566644 4589999999999988775
No 249
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=71.60 E-value=48 Score=26.14 Aligned_cols=97 Identities=14% Similarity=0.216 Sum_probs=58.9
Q ss_pred HHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEe-CCCCcccCc-c---c-CC
Q psy788 22 EILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI-PPSAFYSDE-H---K-HL 95 (126)
Q Consensus 22 ~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~-pg~~f~~~~-~---~-~~ 95 (126)
.++-+.|.+.|+++.. .||-=++++.......++ ..+ .....++-+|..+.||.-+ -|+.....+ + + .+
T Consensus 335 ~yl~~~L~~~Gvpi~~-~Gghav~iDa~~~lphip---~~~-fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~ 409 (467)
T TIGR02617 335 QYLVNGLEEIGVVCQQ-AGGHAAFVDAGKLLPHIP---ADQ-FPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPC 409 (467)
T ss_pred HHHHHHHHhCCCcEEe-cCccEEEEehhhhCCCCC---hhh-CcHHHHHHHHHHHcCcceEeecceecccCCCCCccCCC
Confidence 3566666666999988 999888888754311111 011 1367888888899999744 455432211 1 1 11
Q ss_pred CCCeEEEEeeC---ChhHHHHHHHHHHHhhh
Q psy788 96 GENLIRYCFFK---KDETLREASSILQTWRN 123 (126)
Q Consensus 96 ~~~~~Rl~~~~---~~e~i~~~~~~l~~~~~ 123 (126)
.-..+|+++.+ +.+.++-..+.|..+.+
T Consensus 410 ~~el~RlaipRrvyt~~h~d~v~~~~~~~~~ 440 (467)
T TIGR02617 410 PAELLRLTIPRATYTQTHMDFIIEAFKHVKE 440 (467)
T ss_pred ccceeeeccccccccHhHHHHHHHHHHHHHh
Confidence 13689999985 55666666666665544
No 250
>PRK07483 hypothetical protein; Provisional
Probab=71.51 E-value=45 Score=25.81 Aligned_cols=52 Identities=12% Similarity=0.028 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEE--EeeCChhHHHHHHHHHHHhhh
Q psy788 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRY--CFFKKDETLREASSILQTWRN 123 (126)
Q Consensus 67 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl--~~~~~~e~i~~~~~~l~~~~~ 123 (126)
..+...+ .++||.+.|...- ... ...+.+|| .+..+++++++++++|.++++
T Consensus 383 ~~~~~~~-~~~Gll~~~~~~~-~~~---~~~~~l~~~PpL~it~~eid~~~~~l~~~l~ 436 (443)
T PRK07483 383 ARIKREA-MARGLMVYPMGGT-IDG---VRGDHVLLAPPFIITAAQIDEIVERLGDAID 436 (443)
T ss_pred HHHHHHH-HHCCcEEEecCcc-ccC---CCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 3566765 4899999874210 000 11356887 444588999999999998876
No 251
>PLN02590 probable tyrosine decarboxylase
Probab=69.06 E-value=58 Score=26.12 Aligned_cols=100 Identities=9% Similarity=-0.000 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCcc-cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 10 FYTISEELRPKREILADALDKA-GMVP-VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~-g~~~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
++++.+..-+..+++.+.+.+. ++.+ .+|.-+..+|--.+... +. .....-..++.+.+. +.|...+-.+..
T Consensus 426 ~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~~---~~--~~~~~ln~~l~~~l~-~~G~~~vs~t~~ 499 (539)
T PLN02590 426 LRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDG---DE--DQCNERNRELLAAVN-STGKIFISHTAL 499 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCCC---CH--HHHHHHHHHHHHHHH-hCCCEEEEeeEE
Confidence 3333344444445566777665 5775 44554433332222110 00 000001235566654 344443333332
Q ss_pred ccCcccCCCCCeEEEEeeC---ChhHHHHHHHHHHHhh
Q psy788 88 YSDEHKHLGENLIRYCFFK---KDETLREASSILQTWR 122 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~~---~~e~i~~~~~~l~~~~ 122 (126)
.+..++|++++. +++.++..++.|.+..
T Consensus 500 -------~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a 530 (539)
T PLN02590 500 -------SGKFVLRFAVGAPLTEEKHVTEAWQIIQKHA 530 (539)
T ss_pred -------CCEEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 146799999974 6788999988887653
No 252
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=68.73 E-value=52 Score=25.43 Aligned_cols=94 Identities=16% Similarity=0.025 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHhC--CCcc--cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788 13 ISEELRPKREILADALDKA--GMVP--VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY 88 (126)
Q Consensus 13 ~r~~~~~r~~~l~~~l~~~--g~~~--~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~ 88 (126)
+....+++-+.+.+.|++. ...+ ....-|+++-+++..... + + +......+.+.+ .+.||.+.|.
T Consensus 340 ~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~--~-~---~~~~~~~~~~~~-~~~Gil~~~~---- 408 (441)
T PRK05769 340 LLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRK--E-P---DPKLRDKVLYEA-FKRGLLLLGA---- 408 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCCc--c-c---cHHHHHHHHHHH-HhCCcEEecC----
Confidence 3445555555666666543 1222 222236667777743100 0 0 000133566665 4789998652
Q ss_pred cCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788 89 SDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNK 124 (126)
Q Consensus 89 ~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~ 124 (126)
+.+.+|++-.. +++++++++++|.+++.+
T Consensus 409 -------~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~ 439 (441)
T PRK05769 409 -------GKSAIRIIPPLIITEEEADIGLEILEEAIKE 439 (441)
T ss_pred -------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 23568887664 999999999999988764
No 253
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=68.66 E-value=54 Score=25.55 Aligned_cols=95 Identities=16% Similarity=0.094 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788 13 ISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY 88 (126)
Q Consensus 13 ~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~ 88 (126)
+.+..+++-+.+.+.|+++ ++....-.-|+++-+++.... ... .........+...++ +.||.+.|. +
T Consensus 350 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~---~~~-~~~~~~~~~~~~~~~-~~Gvl~~~~---~ 421 (459)
T PRK06082 350 LLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDR---HTK-ERAYDEAEAVLYRCL-NNGLSFKVS---Q 421 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeeeeeeccceeEEEEccCc---ccc-CccHHHHHHHHHHHH-hCCCEEEec---C
Confidence 3344444445555555443 322222233667778775311 000 000001234556654 889988662 1
Q ss_pred cCcccCCCCCeEEEEe--eCChhHHHHHHHHHHHhhh
Q psy788 89 SDEHKHLGENLIRYCF--FKKDETLREASSILQTWRN 123 (126)
Q Consensus 89 ~~~~~~~~~~~~Rl~~--~~~~e~i~~~~~~l~~~~~ 123 (126)
.+.+|++- ..++++++++++++.+++.
T Consensus 422 --------~~~i~~~Ppl~it~~eid~~~~~l~~~l~ 450 (459)
T PRK06082 422 --------GNVIQLSPPLIITREELTQALAILEEAIA 450 (459)
T ss_pred --------CCEEEEeCCCccCHHHHHHHHHHHHHHHH
Confidence 25678874 4588999999999987765
No 254
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=68.38 E-value=48 Score=24.88 Aligned_cols=92 Identities=15% Similarity=0.171 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhC-CCcccC---CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcc
Q psy788 17 LRPKREILADALDKA-GMVPVI---PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEH 92 (126)
Q Consensus 17 ~~~r~~~l~~~l~~~-g~~~~~---p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~ 92 (126)
..++.+.+.+.|.++ |+++.. +..+ ++.++.+.... .. .....+..++.+.| .+.||...++ .
T Consensus 285 ~~~~~~~l~~~L~~l~g~~~~~~~~~~~~-i~~~~~~~~~~-~~---~~~~~~~~~~~~~L-~~~gI~~~~~-----~-- 351 (387)
T PRK09331 285 EVKKARWFVDELEKIEGFKQLGEKPRNHD-LMKFETPSFDE-IA---KKHKRRGFFLYEEL-KKRGIHGIKP-----G-- 351 (387)
T ss_pred HHHHHHHHHHHHhcCCCEEEeccCcCcCC-eEEEeCCchhH-Hh---hhccccchhHHHHH-HHcCceEEcc-----C--
Confidence 345666778888888 777652 2233 33455542100 00 00001235688886 5779974331 1
Q ss_pred cCCCCCeEEEEe-eCChhHHHHHHHHHHHhhhc
Q psy788 93 KHLGENLIRYCF-FKKDETLREASSILQTWRNK 124 (126)
Q Consensus 93 ~~~~~~~~Rl~~-~~~~e~i~~~~~~l~~~~~~ 124 (126)
....+|+.. +.+.++++..++.|.+++++
T Consensus 352 ---~~~i~ri~~~g~t~~di~~l~~aL~~i~~~ 381 (387)
T PRK09331 352 ---ATKEFKLSTYGLTWEQVEYVADAFKEIAEK 381 (387)
T ss_pred ---CceEEEEEeccCCHHHHHHHHHHHHHHHHh
Confidence 235667766 44888899999998877654
No 255
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=67.10 E-value=58 Score=25.36 Aligned_cols=47 Identities=15% Similarity=-0.116 Sum_probs=34.2
Q ss_pred HHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN 123 (126)
Q Consensus 67 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~ 123 (126)
..+...++ ++||.+.+. +. ..+.+|+.-. .+++++++++++|.++++
T Consensus 394 ~~~~~~~~-~~Gv~~~~~---g~------~~~~lr~~Ppl~it~~~id~~~~~l~~~l~ 442 (457)
T PRK05639 394 GKICWRAF-ELGLILPSY---GM------FGNVIRITPPLVITKEIAEKGLEIMERAIK 442 (457)
T ss_pred HHHHHHHH-hCCeEEeec---CC------CCCEEEEeCCCccCHHHHHHHHHHHHHHHH
Confidence 45667654 789998763 21 2467888665 488999999999988765
No 256
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=66.42 E-value=62 Score=25.40 Aligned_cols=99 Identities=19% Similarity=0.098 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHhC--CCc-ccCCCc-ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCc
Q psy788 12 TISEELRPKREILADALDKA--GMV-PVIPDG-GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAF 87 (126)
Q Consensus 12 ~~r~~~~~r~~~l~~~l~~~--g~~-~~~p~g-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 87 (126)
.+.+.-++.-+++.+.|.++ ..+ +-..-| |+++-+++-..... .++ +..-...++..+ .+.|+.+.....+
T Consensus 341 ~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~~t-~~p---~~~~~~~i~~~~-~~~Glil~~~G~~ 415 (447)
T COG0160 341 NLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDT-KEP---DAELAAKIVARA-FERGLLLLTCGPH 415 (447)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCCCC-CCC---CHHHHHHHHHHH-HHcCCEEeccCCC
Confidence 45555555556666666654 233 223333 78888998642100 000 001234567775 5889987775433
Q ss_pred ccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhhc
Q psy788 88 YSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRNK 124 (126)
Q Consensus 88 ~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~~ 124 (126)
.+-+||.-. .++++++++++.|.++++.
T Consensus 416 ---------~nviRi~PPL~is~e~~d~~l~il~~al~~ 445 (447)
T COG0160 416 ---------GNVLRILPPLTISDEELDEGLDILEEALKE 445 (447)
T ss_pred ---------CcEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 356788654 4899999999999988763
No 257
>PRK07046 aminotransferase; Validated
Probab=65.59 E-value=62 Score=25.17 Aligned_cols=43 Identities=9% Similarity=0.107 Sum_probs=31.4
Q ss_pred HHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788 68 KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN 123 (126)
Q Consensus 68 ~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~ 123 (126)
.+...++ ++||.+.|. + +.++++.+.++++|++.++.+.++++
T Consensus 407 ~~~~~~~-~~Gv~~~~~---~---------~~~~~~p~~t~~did~~~~~~~~~l~ 449 (453)
T PRK07046 407 ALHLYLL-NRGVLITPF---H---------NMMLVCPATTAADVDRLVAAFDACLG 449 (453)
T ss_pred HHHHHHH-HCCCEEecc---c---------CcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 4556654 789988762 1 23667776789999999999988875
No 258
>PRK06148 hypothetical protein; Provisional
Probab=61.35 E-value=1.1e+02 Score=26.59 Aligned_cols=47 Identities=4% Similarity=-0.165 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN 123 (126)
Q Consensus 67 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~ 123 (126)
..+...+ .++||.+.|. +. ..+.+||.-. .++++++++++.|.+++.
T Consensus 961 ~~i~~~~-~~~Gvl~~~~---g~------~~~vlr~~Ppl~it~~~id~~l~~l~~~l~ 1009 (1013)
T PRK06148 961 RYVKNGA-RERGILIGTE---GP------HDNVLKIRPPLIFSRADADHLLEVLDDVLA 1009 (1013)
T ss_pred HHHHHHH-HhCCeEEecc---CC------CCCEEEEeCCccCCHHHHHHHHHHHHHHHH
Confidence 3566665 4789999763 21 1356777554 589999999999988875
No 259
>PRK12566 glycine dehydrogenase; Provisional
Probab=60.95 E-value=1.1e+02 Score=26.51 Aligned_cols=98 Identities=13% Similarity=0.073 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceE--EEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 10 FYTISEELRPKREILADALDKA-GMVPVIPDGGYF--MVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
+.+....-..+.+++.+.|.+. ++.+..+++-+| +.+++.... ...+ .+..+++++|+ +.|+...- ..
T Consensus 773 Lk~aa~~ailnAnYla~rL~~~~~v~~~~~~~~~~hEfii~~~~l~------~~~g-~~~~dvakRL~-d~Gihapt-~~ 843 (954)
T PRK12566 773 LADASEVAILSANYLANQLGGAFPVLYRGRNERVAHECILDLRPLK------AQTG-ISEEDVAKRLM-DYGFHAPT-MS 843 (954)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhCCCCcCCCCCCeeeEEEEEccccc------cccC-CCHHHHHHHHH-HCCcEEeE-Ee
Confidence 4444544455667778888664 555533333322 223333210 0000 13567999987 87886443 22
Q ss_pred cccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 87 FYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
| . ..+.+|++..- +.++|+..++.|..+.+
T Consensus 844 f-P------v~~~LmIepTE~eskeEIDrf~eAL~~I~~ 875 (954)
T PRK12566 844 F-P------VPGTLMVEPTESESKAELDRFVEAMLSIRA 875 (954)
T ss_pred e-c------cCCEEEEEeeeeCCHHHHHHHHHHHHHHHH
Confidence 3 2 36789999883 77888888877765543
No 260
>KOG1368|consensus
Probab=60.84 E-value=69 Score=24.09 Aligned_cols=79 Identities=16% Similarity=0.239 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhC-CCcccCC--CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccC
Q psy788 18 RPKREILADALDKA-GMVPVIP--DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKH 94 (126)
Q Consensus 18 ~~r~~~l~~~l~~~-g~~~~~p--~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~ 94 (126)
.++-..+.+.+... ++++..| +.. ++.+.+.... + +.+++++.+ ++.||.+.+|..+
T Consensus 281 Hk~A~~lAe~~~~~~~i~v~v~a~etN-iv~~~l~q~~--~---------~~~~l~~~~-~k~gi~lm~~~s~------- 340 (384)
T KOG1368|consen 281 HKRAKELAEYINTPEEIRVEVPAVETN-IVNMVLCQAR--L---------TAEELCKFL-EKNGILLMGGASR------- 340 (384)
T ss_pred HHHHHHHHHHhccccceeeecchhhcc-eeeeeccccc--C---------CHHHHHHHH-HHCCeEEeecccc-------
Confidence 34445566777655 3666555 444 4445554332 2 477899985 6999999996433
Q ss_pred CCCCeEEEEeeC--ChhHHHHHHHHHHH
Q psy788 95 LGENLIRYCFFK--KDETLREASSILQT 120 (126)
Q Consensus 95 ~~~~~~Rl~~~~--~~e~i~~~~~~l~~ 120 (126)
.+|+.|-. +++.++..+..+++
T Consensus 341 ----r~Rivlh~Qvt~~~ve~~~~~~~k 364 (384)
T KOG1368|consen 341 ----RIRIVLHHQVTDEDVEYVKSVLSK 364 (384)
T ss_pred ----ceEEEEEEecCHHHHHHHHHHHHH
Confidence 37888875 77888877777743
No 261
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=59.26 E-value=75 Score=23.96 Aligned_cols=58 Identities=19% Similarity=0.156 Sum_probs=40.7
Q ss_pred ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEee--CChhHHHHHHHHH
Q psy788 41 GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFF--KKDETLREASSIL 118 (126)
Q Consensus 41 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l 118 (126)
|+++-+++.. +...+...+ .++||.+.+. +.+.+|+.=. .+++++++++++|
T Consensus 301 Gl~~gve~~~--------------~~~~i~~~~-~~~Gll~~~~-----------g~~vlr~~Ppl~it~~~i~~~~~~l 354 (364)
T PRK04013 301 GLMIGIVLKK--------------PVGKYVEEL-QNRGYLVHTA-----------GQRVIRLLPPLIISKDTMEEAKSAI 354 (364)
T ss_pred cEEEEEEeCC--------------cHHHHHHHH-HhCCcEEeeC-----------CCCEEEEeCCcccCHHHHHHHHHHH
Confidence 6777777753 134566765 4789998652 2356777544 4889999999999
Q ss_pred HHhhhc
Q psy788 119 QTWRNK 124 (126)
Q Consensus 119 ~~~~~~ 124 (126)
.+++++
T Consensus 355 ~~~l~~ 360 (364)
T PRK04013 355 EGVIND 360 (364)
T ss_pred HHHHHH
Confidence 988764
No 262
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=58.78 E-value=82 Score=24.29 Aligned_cols=85 Identities=14% Similarity=0.046 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHhC-CCcccC--CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788 14 SEELRPKREILADALDKA-GMVPVI--PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD 90 (126)
Q Consensus 14 r~~~~~r~~~l~~~l~~~-g~~~~~--p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~ 90 (126)
+...+++-+.+.+.|++. +..... -.-|+.+-+++.... ....+++.| .+.||.+.|. +
T Consensus 335 ~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~------------~~~~i~~~l-~e~Gi~v~~~---g-- 396 (429)
T PRK06173 335 QQNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEPV------------NMATLQPRF-VEHGIWVRPF---G-- 396 (429)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCCcc------------cHHHHHHHH-HHCCeEEEec---C--
Confidence 444445555555556543 332211 123666667775321 245677775 5889998662 1
Q ss_pred cccCCCCCeEEEE--eeCChhHHHHHHHHHHHhhh
Q psy788 91 EHKHLGENLIRYC--FFKKDETLREASSILQTWRN 123 (126)
Q Consensus 91 ~~~~~~~~~~Rl~--~~~~~e~i~~~~~~l~~~~~ 123 (126)
+.+||. +..+++++++++++|.+++.
T Consensus 397 -------~~l~~~Ppl~it~~ei~~~~~~l~~~l~ 424 (429)
T PRK06173 397 -------KLVYIMPPFIISPDELSQLTSGLLRVLK 424 (429)
T ss_pred -------CEEEEeCCccCCHHHHHHHHHHHHHHHH
Confidence 346664 44588999999999998876
No 263
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=58.74 E-value=1.2e+02 Score=26.35 Aligned_cols=99 Identities=12% Similarity=0.048 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceE--EEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 8 CYFYTISEELRPKREILADALDKA-GMVPVIPDGGYF--MVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~-g~~~~~p~gg~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
+-+++..+.-..+.+++.+.|.+. ++.+..|.|.+| +.++++.. + .... .+..+++++|+ +.|+...--
T Consensus 802 ~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l----~--~~~g-~~~~di~krL~-d~Gihapt~ 873 (993)
T PLN02414 802 EGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPF----K--NTAG-IEPEDVAKRLM-DYGFHAPTM 873 (993)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEecccc----c--cccC-CCHHHHHHHHH-HcCcEEeee
Confidence 456677777888888999988764 566655555311 22344421 1 0000 13467999987 888874432
Q ss_pred CCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhh
Q psy788 85 SAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWR 122 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~ 122 (126)
+ | . ..+.+|++.+- +.++|+..++.|..+.
T Consensus 874 ~-~-p------v~~~lmiepTE~~skeelDrf~~al~~i~ 905 (993)
T PLN02414 874 S-W-P------VPGTLMIEPTESESKAELDRFCDALISIR 905 (993)
T ss_pred c-c-c------cCCEEEEEeeeeCCHHHHHHHHHHHHHHH
Confidence 2 3 2 36789999884 7788888888776543
No 264
>PRK07481 hypothetical protein; Provisional
Probab=57.24 E-value=89 Score=24.22 Aligned_cols=45 Identities=11% Similarity=-0.001 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEE--eeCChhHHHHHHHHHHHhhhc
Q psy788 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYC--FFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 67 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~--~~~~~e~i~~~~~~l~~~~~~ 124 (126)
..+...+ .+.||.+.|. + +.+|++ +..++++++++++.|.+++++
T Consensus 399 ~~~~~~~-~~~Gvl~~~~---g---------~~i~l~Ppl~it~~eid~~~~~l~~~l~~ 445 (449)
T PRK07481 399 NAVADVA-RENGVLVRPS---G---------TKIILSPPLVIQREDVDRIVDALDAGLSA 445 (449)
T ss_pred HHHHHHH-HhCCeEEEec---C---------CEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 3566665 4789998762 1 136776 555889999999999988763
No 265
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=57.17 E-value=84 Score=23.87 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHH--HhCCeeEeCCCC
Q psy788 13 ISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMT--KNVKLQGIPPSA 86 (126)
Q Consensus 13 ~r~~~~~r~~~l~~~l~~~----g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~gV~v~pg~~ 86 (126)
+.+..++.-+.+.+.|+++ ++.-... -|+++-+++... ....+...+. .+.||.+.+.
T Consensus 299 l~~~~~~~g~~l~~~L~~l~~~~~i~~vrG-~Glm~~i~l~~~-------------~~~~~~~~~~~~~~~Gi~~~~~-- 362 (395)
T PRK03715 299 FLEGVRARGEYLKEKLLELSEERGLEGERG-EGLLRALLLGKD-------------IGPQIVEKARDMQPDGLLLNAP-- 362 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcCeEEc-ceeEEEEEecCc-------------hHHHHHHHHHhccCCCEEEeec--
Confidence 3445555555555555543 3332222 356666776531 1223332221 2349887542
Q ss_pred cccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788 87 FYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNK 124 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~ 124 (126)
..+.+|++... ++++++++++.|.+++++
T Consensus 363 ---------~~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~ 393 (395)
T PRK03715 363 ---------RPNLLRFMPALNVTTEEIDQMIAMLRSVLDK 393 (395)
T ss_pred ---------CCCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 12468888774 899999999999888764
No 266
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=56.94 E-value=97 Score=24.55 Aligned_cols=44 Identities=18% Similarity=0.052 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEE--eeCChhHHHHHHHHHHHhhh
Q psy788 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYC--FFKKDETLREASSILQTWRN 123 (126)
Q Consensus 67 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~--~~~~~e~i~~~~~~l~~~~~ 123 (126)
..+...+ .++||.+.|. + +.+|++ +..++++|+++++.|.++++
T Consensus 445 ~~i~~~~-~~~Gvl~~~~-----------g-~~lrl~Ppl~it~eeid~~~~~l~~al~ 490 (504)
T PLN02760 445 AYFGAEC-KKRGMLVRVA-----------G-DNIMMSPPLIITPEEVDELISIYGKALK 490 (504)
T ss_pred HHHHHHH-HhCCcEEEec-----------C-CEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 3466665 4889998652 1 247887 44689999999999987765
No 267
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=55.18 E-value=18 Score=19.70 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC---CCcccCCCcceEE
Q psy788 10 FYTISEELRPKREILADALDKA---GMVPVIPDGGYFM 44 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~---g~~~~~p~gg~~~ 44 (126)
...+.+.|.-.+..+.+++..+ |+-...|..|+|+
T Consensus 27 ~~~la~~~~vsr~tvr~al~~L~~~g~i~~~~~~G~~V 64 (64)
T PF00392_consen 27 ERELAERYGVSRTTVREALRRLEAEGLIERRPGRGTFV 64 (64)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHCCcEEEECCceEEC
Confidence 4678888888888888888775 7777888888775
No 268
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=54.02 E-value=1.1e+02 Score=24.13 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN 123 (126)
Q Consensus 67 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~ 123 (126)
..+...|+ ++||.+.|.. +. .++ +++..++++|++.++.+.++++
T Consensus 428 ~~~~~~l~-~~Gv~~~~~~-~~--------~~~--psl~ht~~dId~~l~al~~~l~ 472 (474)
T PLN02482 428 ARFHRGML-EEGVYLAPSQ-FE--------AGF--TSLAHTEEDIDFTIAAAERVLA 472 (474)
T ss_pred HHHHHHHH-HCCeEEeccC-CC--------CCc--CCCCCCHHHHHHHHHHHHHHHH
Confidence 35677764 7899998731 11 122 6677789999999999988775
No 269
>PRK07482 hypothetical protein; Provisional
Probab=53.03 E-value=1.1e+02 Score=23.89 Aligned_cols=46 Identities=4% Similarity=-0.003 Sum_probs=32.3
Q ss_pred HHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEE--eeCChhHHHHHHHHHHHhhh
Q psy788 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYC--FFKKDETLREASSILQTWRN 123 (126)
Q Consensus 67 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~--~~~~~e~i~~~~~~l~~~~~ 123 (126)
..+...++ +.||.+.++. ..+.+|+. +..++++++++++.|.++++
T Consensus 406 ~~i~~~~~-~~Gvl~~~~~----------~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~ 453 (461)
T PRK07482 406 PQVSAAAL-ERGVIARAMP----------HGDILGFAPPLVLTRAEADEIVAIAKDAVD 453 (461)
T ss_pred HHHHHHHH-HCCcEEecCC----------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 35666654 7899876521 12457774 55699999999999988775
No 270
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=50.64 E-value=1.2e+02 Score=23.64 Aligned_cols=44 Identities=11% Similarity=0.076 Sum_probs=32.9
Q ss_pred HHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEE--eeCChhHHHHHHHHHHHhhh
Q psy788 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYC--FFKKDETLREASSILQTWRN 123 (126)
Q Consensus 67 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~--~~~~~e~i~~~~~~l~~~~~ 123 (126)
..+...+ .++||.+.|. + +.+||+ +..+++++++++++|.++++
T Consensus 400 ~~i~~~~-~~~Gll~~~~-----------g-~~l~~~Ppl~it~~eid~~~~~l~~al~ 445 (453)
T PRK06943 400 RRFFEAA-LERELLLRPI-----------G-TTVYLMPPYVLDDDEIAWLAERTRATLD 445 (453)
T ss_pred HHHHHHH-HHCCcEEEec-----------C-CEEEEeCCCcCCHHHHHHHHHHHHHHHH
Confidence 4566665 4889988652 1 247887 66789999999999988875
No 271
>PRK06767 methionine gamma-lyase; Provisional
Probab=48.60 E-value=1.2e+02 Score=22.96 Aligned_cols=87 Identities=13% Similarity=-0.014 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCc-ccC-----------CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhC
Q psy788 11 YTISEELRPKREILADALDKA-GMV-PVI-----------PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNV 77 (126)
Q Consensus 11 ~~~r~~~~~r~~~l~~~l~~~-g~~-~~~-----------p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 77 (126)
....++.+++...+.+.|+++ +++ +.. ..||++. ++++... . +...|.+.| +..
T Consensus 258 ~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vs-f~l~~~~---~--------~~~~f~~~l-~~~ 324 (386)
T PRK06767 258 AVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVIS-FSIKGGK---E--------ETQAFINDL-HFI 324 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEE-EEEcCCH---H--------HHHHHHHhC-Ccc
Confidence 344467788888999999987 555 232 2456443 4454321 1 355787875 455
Q ss_pred CeeEeCCCCcccC------------cc----cCCCCCeEEEEeeC-ChhH
Q psy788 78 KLQGIPPSAFYSD------------EH----KHLGENLIRYCFFK-KDET 110 (126)
Q Consensus 78 gV~v~pg~~f~~~------------~~----~~~~~~~~Rl~~~~-~~e~ 110 (126)
++.+.=|.....- .+ ....++.+|||++- +.++
T Consensus 325 ~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE~~~d 374 (386)
T PRK06767 325 TIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGLESWED 374 (386)
T ss_pred EEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHH
Confidence 5555444322210 00 01135799999998 4443
No 272
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=47.85 E-value=1.3e+02 Score=23.17 Aligned_cols=45 Identities=18% Similarity=0.076 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN 123 (126)
Q Consensus 67 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~ 123 (126)
..+...+ .++||.+.|.. . +.+.+++..+++++++.++.+.++++
T Consensus 382 ~~~~~~l-~~~Gv~~~~~~---~--------~~~~~~l~~t~e~id~~~~~l~~~l~ 426 (428)
T PRK12389 382 GKFFKLM-LNQGINLAPSK---Y--------EAWFLTTAHTEEDIEETLEAVDRAFA 426 (428)
T ss_pred HHHHHHH-HHCCcEeecCC---C--------CCeeecCCCCHHHHHHHHHHHHHHHH
Confidence 3566665 47899998841 1 11356777789999999999988875
No 273
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=45.49 E-value=1.4e+02 Score=23.12 Aligned_cols=100 Identities=6% Similarity=-0.032 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCcccC--CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 10 FYTISEELRPKREILADALDKA-GMVPVI--PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~-g~~~~~--p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
++++.+...+..+.+.+.|.+. ++.+.. |..++.. ..++... ... .+..++++.| .+.|+.+..-..
T Consensus 324 ~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~-Fr~~~~~-------~~~-~~~~~l~~~L-~~~G~~~~~~~~ 393 (431)
T TIGR01788 324 YRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVA-FKLKDDA-------DPG-YTLYDLSHRL-RERGWIVPAYTL 393 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEE-EEeCCCC-------CCC-cCHHHHHHHH-HHCCCcccCCCC
Confidence 3444455555566677777776 477654 4555444 2333210 000 0345778875 578886533221
Q ss_pred cccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 87 FYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
-..- .+..++|+++-. ..+.+++.++-|..++.
T Consensus 394 p~~~----~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~ 428 (431)
T TIGR01788 394 PKNA----EDIVVMRIVVREGFSRDLAELLIEDIEAALA 428 (431)
T ss_pred CCcc----CCeEEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 1111 134678998852 66788888888877654
No 274
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=44.28 E-value=1.6e+02 Score=23.21 Aligned_cols=59 Identities=15% Similarity=-0.063 Sum_probs=39.9
Q ss_pred cceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEee--CChhHHHHHHHH
Q psy788 40 GGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFF--KKDETLREASSI 117 (126)
Q Consensus 40 gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~ 117 (126)
-|+++-++++... ....+.+.++ +.||.+.+. + .+.+||.-. .++++++.++++
T Consensus 404 ~Glm~gie~~~~~------------~~~~i~~~~~-~~Gvl~~~~---g--------~~~ir~~Ppl~it~~eid~~~~~ 459 (464)
T TIGR00699 404 RGTFIAWDTPDEA------------KRDKLLKKAR-NNGVNIGGC---G--------VKAIRLRPMLVFQKHHADIFLEI 459 (464)
T ss_pred eEEEEEEecCCHH------------HHHHHHHHHH-HCCcEEecC---C--------CCeEEEeCCCCCCHHHHHHHHHH
Confidence 4666667775310 2456777764 789998652 1 356888665 489999999999
Q ss_pred HHHhh
Q psy788 118 LQTWR 122 (126)
Q Consensus 118 l~~~~ 122 (126)
|.+++
T Consensus 460 l~~~~ 464 (464)
T TIGR00699 460 ISKII 464 (464)
T ss_pred HHHhC
Confidence 98753
No 275
>KOG1122|consensus
Probab=43.96 E-value=1.6e+02 Score=23.20 Aligned_cols=62 Identities=18% Similarity=0.233 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhC-CeeEeCCCCcc
Q psy788 10 FYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNV-KLQGIPPSAFY 88 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-gV~v~pg~~f~ 88 (126)
+..+.+...-+|+++.++++-+ .| ||+.++-.++-. .+ ..+.++.+++.+. .+.++|-..+.
T Consensus 340 ~~di~~~~~LQr~LllsAi~lv-----~~-GGvLVYSTCSI~---~~--------ENE~vV~yaL~K~p~~kL~p~~~~i 402 (460)
T KOG1122|consen 340 VKDILRYAHLQRELLLSAIDLV-----KA-GGVLVYSTCSIT---VE--------ENEAVVDYALKKRPEVKLVPTGLDI 402 (460)
T ss_pred HHHHHHhHHHHHHHHHHHHhhc-----cC-CcEEEEEeeecc---hh--------hhHHHHHHHHHhCCceEeccccccC
Confidence 4567777777788888887543 22 999998888743 11 3456667777776 88888865443
No 276
>KOG1357|consensus
Probab=43.56 E-value=95 Score=24.64 Aligned_cols=94 Identities=15% Similarity=0.099 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcc--eEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 8 CYFYTISEELRPKREILADALDKAGMVPVIPDGG--YFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
+--++.-.++.++..++...+++.|+-+-.-+-+ +=+.+..+. .-..|.+.|+ +.++.++-+.
T Consensus 401 ~~g~~k~~~l~~ns~yfr~~l~~~gfivyG~~dSpVvplll~~~~--------------k~~~f~r~~l-~~nigvVvvg 465 (519)
T KOG1357|consen 401 NRGRQKIERLAENSRYFRWELQKMGFIVYGNNDSPVVPLLLYGPA--------------KIVAFSREML-ERNIGVVVVG 465 (519)
T ss_pred cHHHHHHHHHHhhhHHHHHhhhcCcEEEecCCCCCcceeeecCcc--------------cccHHHHHHH-hcCceEEEEe
Confidence 3445566677777777777776654433222111 011111111 1336777766 5566666554
Q ss_pred CcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHH
Q psy788 86 AFYSDEHKHLGENLIRYCFFK--KDETLREASSILQT 120 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~ 120 (126)
..... --+...|++.++ ..|.+..+++-+..
T Consensus 466 fPatp----l~e~r~R~c~Sa~ht~e~ld~~l~~i~~ 498 (519)
T KOG1357|consen 466 FPATP----LLESRARFCLSASHTKEDLDRALEVIDR 498 (519)
T ss_pred CCCch----HHHhHHHhhhcccccHHHHHHHHHHHhh
Confidence 33211 124667888875 66777777665543
No 277
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=43.01 E-value=1.6e+02 Score=22.88 Aligned_cols=91 Identities=10% Similarity=-0.026 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHhC-CCc-ccCC-CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccC
Q psy788 14 SEELRPKREILADALDKA-GMV-PVIP-DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSD 90 (126)
Q Consensus 14 r~~~~~r~~~l~~~l~~~-g~~-~~~p-~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~ 90 (126)
.+..++.-+.+.+.|+++ +.. +... .-|+++-+++..... . .......+...+ .++||.+.++
T Consensus 348 ~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~--~-----~~~~~~~~~~~~-~~~Gv~~~~~------ 413 (445)
T PRK09221 348 FERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPG--A-----PGARGYEAFMKC-FEKGLLVRYT------ 413 (445)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEecccc--c-----ccchHHHHHHHH-HHCCeEEeec------
Confidence 344555555566666544 222 1111 125555566643100 0 000134677775 4889998652
Q ss_pred cccCCCCCeEEEE--eeCChhHHHHHHHHHHHhhhc
Q psy788 91 EHKHLGENLIRYC--FFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 91 ~~~~~~~~~~Rl~--~~~~~e~i~~~~~~l~~~~~~ 124 (126)
.+.+||+ +..+++++++++++|.+++.+
T Consensus 414 ------~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~ 443 (445)
T PRK09221 414 ------GDTIALSPPLIIEKAQIDELVDALGDALRA 443 (445)
T ss_pred ------CCEEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 1358887 445899999999999988753
No 278
>PRK05968 hypothetical protein; Provisional
Probab=42.38 E-value=1.5e+02 Score=22.45 Aligned_cols=45 Identities=16% Similarity=-0.041 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhCCeeEeCCCCcc---------cC---cc----cCCCCCeEEEEeeC-ChhHH
Q psy788 66 DFKFAKWMTKNVKLQGIPPSAFY---------SD---EH----KHLGENLIRYCFFK-KDETL 111 (126)
Q Consensus 66 ~~~~~~~l~~~~gV~v~pg~~f~---------~~---~~----~~~~~~~~Rl~~~~-~~e~i 111 (126)
..+|++.| +..++.+.-|.... .. .+ ....++.+|+|++. +.++|
T Consensus 315 ~~~f~~~L-~~~~~~~s~G~~~slv~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGlE~~~dl 376 (389)
T PRK05968 315 VRAFADAL-KLFRLGVSWGGHESLVVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGLEGTEAL 376 (389)
T ss_pred HHHHHHhC-CccEEecCCCCCCceeeeCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHH
Confidence 56788875 45565554444433 00 00 01125799999997 55443
No 279
>KOG1358|consensus
Probab=41.75 E-value=1.1e+02 Score=23.83 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhh
Q psy788 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWR 122 (126)
Q Consensus 67 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~ 122 (126)
++++...+.+ ++.++.-..--..+. -+.+..+|+++.. ++++++.+++.|.++.
T Consensus 408 ~eivd~~i~~-~~ll~~a~~~~~~e~-~~~~pSiri~~~a~~seeel~ra~~~ik~~~ 463 (467)
T KOG1358|consen 408 EEIVDKCIAE-GVLLTRAKYLEKLER-CPIPPSIRICVSAGMSEEELERAAELIKEVA 463 (467)
T ss_pred HHHHHHHHhh-cceehhhhhhhhccc-CCCCCcEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 3566776655 888776543322211 1235579999985 8899999998887664
No 280
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=40.24 E-value=54 Score=17.28 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q psy788 8 CYFYTISEELRPKREILADALDK 30 (126)
Q Consensus 8 ~~l~~~r~~~~~r~~~l~~~l~~ 30 (126)
-|+.+.++.+++-|+.++++-.+
T Consensus 20 ~hmkrycrafrqdrdallear~k 42 (54)
T PF13260_consen 20 CHMKRYCRAFRQDRDALLEARNK 42 (54)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 57889999999999999888655
No 281
>PRK07036 hypothetical protein; Provisional
Probab=38.31 E-value=1.9e+02 Score=22.57 Aligned_cols=44 Identities=14% Similarity=0.106 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEE--eeCChhHHHHHHHHHHHhhh
Q psy788 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYC--FFKKDETLREASSILQTWRN 123 (126)
Q Consensus 67 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~--~~~~~e~i~~~~~~l~~~~~ 123 (126)
..+...+ .++||.+.|. + +.+|++ +..++++|+++++.|.+++.
T Consensus 406 ~~~~~~~-~~~Gvl~~~~---~---------~~~~l~Ppl~it~~~id~~~~~l~~al~ 451 (466)
T PRK07036 406 QRIDRHC-QERGLLVRPL---E---------HLCVLSPPLIITRAQIDEIVAILRAAIE 451 (466)
T ss_pred HHHHHHH-HHCCcEEeec---C---------CEEEEeCCCcCCHHHHHHHHHHHHHHHH
Confidence 3566665 4889998762 1 235666 44588999999998877664
No 282
>COG2810 Predicted type IV restriction endonuclease [Defense mechanisms]
Probab=37.21 E-value=95 Score=22.42 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--------------------CcceEEEEeeCCcccccccCCCCCchhh
Q psy788 7 KCYFYTISEELRPKREILADALDKAGMVPVIP--------------------DGGYFMVADWTQLRPMLRLDTESDKYED 66 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p--------------------~gg~~~~i~~~~~~~~~~~~~~~~~~~~ 66 (126)
..|++.++..=.-|.-++...|..+|+.+-.| +|+.|.++.-...... + ..+-
T Consensus 14 ~~~y~~~~nEa~vrq~lIlp~L~slGwdi~nPkEV~PEe~t~~GraDyalikd~kvfafieak~ls~~-~------akd~ 86 (284)
T COG2810 14 NKFYNKSRNEAAVRQHLILPFLSSLGWDIDNPKEVRPEEKTEEGRADYALIKDGKVFAFIEAKNLSVN-P------AKDV 86 (284)
T ss_pred HHHhccCccHHHHHHHHHHHHHHHcCCCCCCccccCcccccccCccceEEEecCcEEEEEeccccCcC-c------hHHH
Confidence 34444455555666667777777778776554 6788888776543211 1 1234
Q ss_pred HHHHHHHHHhCCeeE
Q psy788 67 FKFAKWMTKNVKLQG 81 (126)
Q Consensus 67 ~~~~~~l~~~~gV~v 81 (126)
.+++.++ .+.||-+
T Consensus 87 qq~~~Ya-v~~Gv~~ 100 (284)
T COG2810 87 QQLAKYA-VDKGVEV 100 (284)
T ss_pred HHHHHHH-HhcCcEE
Confidence 5788885 4778763
No 283
>PRK06149 hypothetical protein; Provisional
Probab=36.07 E-value=2.9e+02 Score=23.96 Aligned_cols=48 Identities=8% Similarity=0.032 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEE--eeCChhHHHHHHHHHHHhhhc
Q psy788 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYC--FFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 67 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~--~~~~~e~i~~~~~~l~~~~~~ 124 (126)
..+...+. +.||.+.|. +. ..+.+||. ++.+++++++++++|.+++..
T Consensus 921 ~~i~~~l~-~~Gvl~~~~---g~------~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 921 AAICDRLL-ELGVIMQPT---GD------HLNILKIKPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred HHHHHHHH-hCCeEEeec---CC------CCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 46777764 789999873 21 23667764 445889999999999988763
No 284
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=35.33 E-value=38 Score=17.45 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC---CCcccCCCcceE
Q psy788 10 FYTISEELRPKREILADALDKA---GMVPVIPDGGYF 43 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~---g~~~~~p~gg~~ 43 (126)
.+.+.+.+.-.+..+.++++.+ |+-...+.+|++
T Consensus 23 ~~~la~~~~vs~~tv~~~l~~L~~~g~i~~~~~~g~~ 59 (60)
T smart00345 23 ERELAAQLGVSRTTVREALSRLEAEGLVQRRPGSGTF 59 (60)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCeeE
Confidence 5667777777777777777665 664456777765
No 285
>PRK05965 hypothetical protein; Provisional
Probab=34.51 E-value=2.2e+02 Score=22.16 Aligned_cols=45 Identities=4% Similarity=-0.072 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEE--eeCChhHHHHHHHHHHHhhh
Q psy788 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYC--FFKKDETLREASSILQTWRN 123 (126)
Q Consensus 67 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~--~~~~~e~i~~~~~~l~~~~~ 123 (126)
..+...+ .+.||.+.|. +.+.+|+. +..+++++++++++|.++++
T Consensus 400 ~~i~~~~-~~~Gll~~~~-----------g~~~i~~~PpL~it~~ei~~~~~~l~~~l~ 446 (459)
T PRK05965 400 DRIFDRA-YANGLVFRAF-----------GDGVLGFAPALCCTEGEFDLIFERTRKTLD 446 (459)
T ss_pred HHHHHHH-HhCCeEEEec-----------CCcEEEEECCCcCCHHHHHHHHHHHHHHHH
Confidence 3466665 4889998641 23567776 44588999999999988775
No 286
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=33.78 E-value=2e+02 Score=21.45 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC----Cccc-CCCc----ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCee
Q psy788 10 FYTISEELRPKREILADALDKAG----MVPV-IPDG----GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQ 80 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~g----~~~~-~p~g----g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~ 80 (126)
++.+.+.-+++.+.+.+.|.++. +.+. .|.+ .+++|+.++... +..++.+.| .++||.
T Consensus 249 l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~r~~l~~~L-~~~gI~ 315 (375)
T PRK11706 249 ADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRDLE------------DRSALINFL-KEAGIM 315 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECCcC------------CHHHHHHHH-HHCCCC
Confidence 34444444444445566665541 3321 2332 335567665321 355788875 588998
Q ss_pred EeC
Q psy788 81 GIP 83 (126)
Q Consensus 81 v~p 83 (126)
+.+
T Consensus 316 ~~~ 318 (375)
T PRK11706 316 AVF 318 (375)
T ss_pred ccc
Confidence 753
No 287
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=33.63 E-value=2.1e+02 Score=21.73 Aligned_cols=94 Identities=13% Similarity=0.183 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCcc--cCC--CcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCC
Q psy788 10 FYTISEELRPKREILADALDKA-GMVP--VIP--DGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPP 84 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~-g~~~--~~p--~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg 84 (126)
++.+.++-+++.+++.+++++. ++.. ..| -+-|-+..++++.. .+.+|... ++++|+...-|
T Consensus 263 l~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~~------------l~~~f~~~-a~~~gl~~lkG 329 (364)
T PRK12462 263 VHAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQPR------------LDTLFKEQ-STEAGFCGLSG 329 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCcceEEEEcCCHH------------HHHHHHHH-HHHCCCccccC
Confidence 5667778888888999999876 3322 122 23344444444321 25678777 47889887765
Q ss_pred CCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhhcC
Q psy788 85 SAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRNKN 125 (126)
Q Consensus 85 ~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~~ 125 (126)
.- .-+.+|.|.=. +.|.++.-++=+.++-++|
T Consensus 330 hr---------~vgg~Ras~yna~~~e~v~~L~~fm~~f~~~~ 363 (364)
T PRK12462 330 HR---------SIGGIRASLYNAVSEQAVSRLCAFLKDFAIRH 363 (364)
T ss_pred Cc---------ccCceEEEcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 31 23569998854 7666666666555555544
No 288
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=33.33 E-value=1e+02 Score=19.69 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCcc
Q psy788 10 FYTISEELRPKREILADALDKAGMVPVIPDGG 41 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg 41 (126)
...+..-+..-++.+.+.|.+.|+....|.|+
T Consensus 61 ~~~~~~g~~~i~~~l~~~L~~~Gv~~i~~~g~ 92 (137)
T cd00446 61 LKNLVEGVEMTLKQLLDVLEKHGVEKIEPEGE 92 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEECCCCC
Confidence 44555666666677888888889998888776
No 289
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=32.26 E-value=63 Score=15.67 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=14.4
Q ss_pred ChhHHHHHHHHHHHhhhc
Q psy788 107 KDETLREASSILQTWRNK 124 (126)
Q Consensus 107 ~~e~i~~~~~~l~~~~~~ 124 (126)
..+.+++|+..|.+++++
T Consensus 16 ~~~d~~~Gi~lLe~l~~~ 33 (35)
T PF14852_consen 16 NREDQQEGIALLEELYRD 33 (35)
T ss_dssp SHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 567789999999887764
No 290
>KOG1549|consensus
Probab=31.21 E-value=82 Score=24.60 Aligned_cols=29 Identities=10% Similarity=0.123 Sum_probs=23.0
Q ss_pred CCCeEEEEeeC--ChhHHHHHHHHHHHhhhc
Q psy788 96 GENLIRYCFFK--KDETLREASSILQTWRNK 124 (126)
Q Consensus 96 ~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~~ 124 (126)
...++||+++. +.++++...+.+.+.++.
T Consensus 388 ~~~~iRis~G~y~t~~di~~~~~~i~~~v~~ 418 (428)
T KOG1549|consen 388 AHSSIRISIGRYTTEEDIDYLVDAIKKLVSL 418 (428)
T ss_pred hcceeEEeeeeeCcHHHHHHHHHHHHHHHHh
Confidence 46899999995 778888888888776654
No 291
>KOG2467|consensus
Probab=31.13 E-value=2.6e+02 Score=21.85 Aligned_cols=81 Identities=15% Similarity=0.044 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccC-CCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788 10 FYTISEELRPKREILADALDKAGMVPVI-PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY 88 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~-p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~ 88 (126)
+....++..+|...+.+.|.+.|.++.. .--.=.+.+++...+ + +-.-++..+...+|.+.--+.|+
T Consensus 319 fk~Yq~qV~~Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G--~----------dGarvE~vle~~~I~~NKNtvpG 386 (477)
T KOG2467|consen 319 FKEYQKQVLKNAKALASALISRGYKLVTGGTDNHLVLVDLRPKG--V----------DGARVEKVLELCHIALNKNTVPG 386 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCceEecCCccceEEEEeccccC--C----------chHHHHHHHHHhhhhhcCCcCCC
Confidence 4556667777888889999888877633 222335556776543 2 22233444555667766666665
Q ss_pred cCcccCCCCCeEEEEe
Q psy788 89 SDEHKHLGENLIRYCF 104 (126)
Q Consensus 89 ~~~~~~~~~~~~Rl~~ 104 (126)
... .-.++.+|++-
T Consensus 387 D~S--al~PgGiRiGt 400 (477)
T KOG2467|consen 387 DKS--ALSPGGIRIGT 400 (477)
T ss_pred Ccc--ccCCCceeccc
Confidence 432 12478899943
No 292
>PRK07049 methionine gamma-lyase; Validated
Probab=30.94 E-value=2.5e+02 Score=21.65 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q psy788 9 YFYTISEELRPKREILADALDKA 31 (126)
Q Consensus 9 ~l~~~r~~~~~r~~~l~~~l~~~ 31 (126)
...++ ++..+++..+.+.|+++
T Consensus 290 l~~R~-~~~~~~a~~la~~L~~~ 311 (427)
T PRK07049 290 LVLRM-ERANRNARAVAEFLRDH 311 (427)
T ss_pred HHHHH-HHHHHHHHHHHHHHHhC
Confidence 33444 45588999999999987
No 293
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=30.01 E-value=78 Score=24.10 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=15.1
Q ss_pred CCeEEEEeeC-ChhH----HHHHHHHHH
Q psy788 97 ENLIRYCFFK-KDET----LREASSILQ 119 (126)
Q Consensus 97 ~~~~Rl~~~~-~~e~----i~~~~~~l~ 119 (126)
++.+|+|++. +.|+ +++|++++.
T Consensus 358 ~~liRlsvGlE~~~dli~Dl~~al~~~~ 385 (388)
T PRK08861 358 QQLLRLSVGLEDAQDLIADLDQAFAKAA 385 (388)
T ss_pred CCeEEEEeCcCCHHHHHHHHHHHHHHHH
Confidence 5799999997 4443 455555544
No 294
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=29.93 E-value=1.1e+02 Score=17.12 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=19.1
Q ss_pred CCeEEEEeeCChhHHHHHHHHHHH
Q psy788 97 ENLIRYCFFKKDETLREASSILQT 120 (126)
Q Consensus 97 ~~~~Rl~~~~~~e~i~~~~~~l~~ 120 (126)
-+.+.+.+..+++.++++++.|.+
T Consensus 45 ~G~l~l~l~g~~~~~~~a~~~L~~ 68 (76)
T PF09383_consen 45 FGILILELPGDDEEIEKAIAYLRE 68 (76)
T ss_dssp EEEEEEEEES-HHHHHHHHHHHHH
T ss_pred EEEEEEEEECCHHHHHHHHHHHHH
Confidence 467888888888889999998875
No 295
>cd04752 Commd4 COMM_Domain containing protein 4. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=29.86 E-value=1.5e+02 Score=19.92 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=27.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q psy788 3 TAPDKCYFYTISEELRPKREILADALDKAGMVP 35 (126)
Q Consensus 3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~ 35 (126)
+.-+.++...+.+.|.+++..+.+.+.+..+.+
T Consensus 72 lglp~e~~~~l~~~~~~~~~~l~~~l~~~~l~~ 104 (174)
T cd04752 72 LGLPKEHATSLCRSYEEKQSKLQESLRANSLRL 104 (174)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 456788999999999999999999998764443
No 296
>KOG4175|consensus
Probab=29.68 E-value=2e+02 Score=20.38 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhCCeeEeCCCCcccCcc-----cCCCCCeE----EEEeeCChhHHHHHHHHHHHhh
Q psy788 66 DFKFAKWMTKNVKLQGIPPSAFYSDEH-----KHLGENLI----RYCFFKKDETLREASSILQTWR 122 (126)
Q Consensus 66 ~~~~~~~l~~~~gV~v~pg~~f~~~~~-----~~~~~~~~----Rl~~~~~~e~i~~~~~~l~~~~ 122 (126)
...+-.+ .+++||.++|-......++ .+..+.|+ |++.....+.+.+.+..|.+-+
T Consensus 137 a~~~Rne-~~k~gislvpLvaPsTtdeRmell~~~adsFiYvVSrmG~TG~~~svn~~l~~L~qrv 201 (268)
T KOG4175|consen 137 AETLRNE-ARKHGISLVPLVAPSTTDERMELLVEAADSFIYVVSRMGVTGTRESVNEKLQSLLQRV 201 (268)
T ss_pred HHHHHHH-HHhcCceEEEeeCCCChHHHHHHHHHhhcceEEEEEeccccccHHHHHHHHHHHHHHH
Confidence 3445455 5799999999877765321 11223433 3344435555666665554433
No 297
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=29.45 E-value=60 Score=24.40 Aligned_cols=28 Identities=21% Similarity=0.257 Sum_probs=21.8
Q ss_pred CCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788 96 GENLIRYCFFK-KDETLREASSILQTWRN 123 (126)
Q Consensus 96 ~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~ 123 (126)
|-+.+||+|++ +.+...+-++.++++.+
T Consensus 27 Gm~v~RiN~SHg~~e~~~~~i~~iR~a~~ 55 (348)
T PF00224_consen 27 GMNVARINFSHGTHEEHKEIIENIREAEK 55 (348)
T ss_dssp TEEEEEEETTSS-HHHHHHHHHHHHHHHH
T ss_pred ccEEEEEeeecCCHHHHHHHHHHHHHHHh
Confidence 45679999998 88888888888887653
No 298
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=28.90 E-value=4e+02 Score=23.32 Aligned_cols=88 Identities=8% Similarity=0.033 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCC
Q psy788 7 KCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSA 86 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 86 (126)
..-++++-++...+-.++.+.|.+.|+++..+ .||=-+.+.... . +..++.+.++ ++||.+..
T Consensus 337 ~~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~--~fF~~~~v~~~~---~--------~~~~i~~~~~-~~gi~l~~--- 399 (939)
T TIGR00461 337 PKGLKNIARRIHSLTSILANGLENDPHELINK--TWFDTLTVKVGN---G--------ISSELLKAAE-EFNINLRA--- 399 (939)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--CccceEEEEeCC---C--------CHHHHHHHHH-HCCCeeee---
Confidence 34466666667777778888887778777555 444333333110 0 3567778764 78998544
Q ss_pred cccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHH
Q psy788 87 FYSDEHKHLGENLIRYCFFK--KDETLREASSILQ 119 (126)
Q Consensus 87 f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~ 119 (126)
. ..+.+++|+.- +.++|+.-++.+.
T Consensus 400 ---~-----~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 400 ---V-----DTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred ---c-----CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 1 13578999984 7777887777664
No 299
>PRK06105 aminotransferase; Provisional
Probab=28.42 E-value=2.9e+02 Score=21.56 Aligned_cols=44 Identities=5% Similarity=-0.059 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEee--CChhHHHHHHHHHHHhhh
Q psy788 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFF--KKDETLREASSILQTWRN 123 (126)
Q Consensus 67 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~--~~~e~i~~~~~~l~~~~~ 123 (126)
..+...+ .+.||.+.|. + +.+|++-. .+++++++++++|.++++
T Consensus 403 ~~i~~~~-~~~Gvl~~~~---g---------~~i~l~Ppl~it~~eid~~~~~l~~~l~ 448 (460)
T PRK06105 403 ARANAAA-HEHGVISRAM---G---------DTLAFCPPLIITAAQVDEMVDRFGRALD 448 (460)
T ss_pred HHHHHHH-HHCCeEEEec---C---------CEEEEECCCccCHHHHHHHHHHHHHHHH
Confidence 3566665 5889998762 1 35777644 488999999999988775
No 300
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=27.46 E-value=81 Score=18.84 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=28.4
Q ss_pred CCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeCChhHH
Q psy788 32 GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETL 111 (126)
Q Consensus 32 g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i 111 (126)
+-++..|..+|++-+.++.. +..+....++.+.|+. + .... ..+.. +.|-.+.+.|
T Consensus 12 ~Gsi~~P~~~YhLEi~~~~~-------------e~a~~l~~lL~~~~i~--~----k~~~----r~~~~-~vYlK~~e~I 67 (93)
T PF14527_consen 12 CGSISDPKKSYHLEIRFNDE-------------EFAEQLKELLNKFGIN--A----KIIK----RKNKY-VVYLKDSEQI 67 (93)
T ss_dssp HEEE--TTT---EEEEES-H-------------HHHHHHHHHHHHH----------EEEE----ESSEE-EEEE--HHHH
T ss_pred CeeccCCCCceEEEEecCCH-------------HHHHHHHHHHHHcCCC--c----eeee----ecCce-EEEEcCHHHH
Confidence 36778999999999999853 1223333445554442 2 1111 12222 4566667777
Q ss_pred HHHHHHHH
Q psy788 112 REASSILQ 119 (126)
Q Consensus 112 ~~~~~~l~ 119 (126)
...+..+.
T Consensus 68 ~dfL~~iG 75 (93)
T PF14527_consen 68 SDFLKLIG 75 (93)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 77776553
No 301
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=27.35 E-value=2.9e+02 Score=21.25 Aligned_cols=58 Identities=14% Similarity=0.038 Sum_probs=39.7
Q ss_pred ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEe--eCChhHHHHHHHHH
Q psy788 41 GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF--FKKDETLREASSIL 118 (126)
Q Consensus 41 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~--~~~~e~i~~~~~~l 118 (126)
|+++-+++.... +...+...+ .++||.+.|. + +.+||.= ..+++++++++++|
T Consensus 360 Gl~~~ie~~~~~------------~~~~~~~~~-~~~Gl~~~~~-----------g-~~l~~~PpL~it~~~i~~~~~~l 414 (422)
T PRK05630 360 GAIGVVEMEQPV------------DMEEATQAA-VDHGVWLRPF-----------G-RLVYVMPPYITTSEQIAQICAAL 414 (422)
T ss_pred ccEEEEEECCcc------------cHHHHHHHH-HHCCeEEEec-----------C-CEEEEECCccCCHHHHHHHHHHH
Confidence 667777775320 244666765 5889998652 1 3566644 45899999999999
Q ss_pred HHhhh
Q psy788 119 QTWRN 123 (126)
Q Consensus 119 ~~~~~ 123 (126)
.++++
T Consensus 415 ~~al~ 419 (422)
T PRK05630 415 AAAVK 419 (422)
T ss_pred HHHHh
Confidence 98876
No 302
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=26.98 E-value=1.4e+02 Score=17.35 Aligned_cols=56 Identities=13% Similarity=-0.047 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhCCeeEeCCCCccc---CcccC-----CCCCeEEEEeeCChhHHHHHHHHHHHhhhc
Q psy788 66 DFKFAKWMTKNVKLQGIPPSAFYS---DEHKH-----LGENLIRYCFFKKDETLREASSILQTWRNK 124 (126)
Q Consensus 66 ~~~~~~~l~~~~gV~v~pg~~f~~---~~~~~-----~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~~ 124 (126)
-.+++..+ .++.-.|-..-+. ..++. -.+|.+-+.-+.+.+.++.+++++...+++
T Consensus 21 L~~la~~~---~~~~YePe~fpgl~~r~~~p~~t~~IF~sGki~itGaks~~~~~~a~~~i~~~L~~ 84 (86)
T PF00352_consen 21 LEELAEEL---ENVEYEPERFPGLIYRLRNPKATVLIFSSGKIVITGAKSEEEAKKAIEKILPILQK 84 (86)
T ss_dssp HHHHHHHS---TTEEEETTTESSEEEEETTTTEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhc---cCcEEeeccCCeEEEeecCCcEEEEEEcCCEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 45666653 5677777633221 11000 024566455556889999999999888765
No 303
>cd04753 Commd5_HCaRG COMM_Domain containing protein 5, also called HCaRG (hypertension-related, calcium-regulated gene). HCaRG is a nuclear protein that might be involved in cell proliferation; it is negatively regulated by extracellular calcium concentration, and its basal mRNA levels are higher in hypertensive animals. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=26.61 E-value=1.1e+02 Score=19.04 Aligned_cols=29 Identities=10% Similarity=0.033 Sum_probs=25.3
Q ss_pred CCCchhHHHHH-HHHHHHHHHHHHHHHHhC
Q psy788 3 TAPDKCYFYTI-SEELRPKREILADALDKA 31 (126)
Q Consensus 3 ~~~~~~~l~~~-r~~~~~r~~~l~~~l~~~ 31 (126)
|+.+++|+..+ +..|..++..+.+.+.+.
T Consensus 2 l~lp~E~~~dL~~~~y~~~r~~l~~~l~~~ 31 (110)
T cd04753 2 LRIPEELITDLASVVYGQRRPLLESGALQK 31 (110)
T ss_pred CCCCHHHHHHHHHHHHhccHHHHHHHHHHh
Confidence 56788999999 699999999999999764
No 304
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=26.10 E-value=89 Score=17.88 Aligned_cols=36 Identities=28% Similarity=0.321 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC---CC-cc-cCCCcceEEE
Q psy788 10 FYTISEELRPKREILADALDKA---GM-VP-VIPDGGYFMV 45 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~---g~-~~-~~p~gg~~~~ 45 (126)
.+.+.+.+.-....+.+.++++ |+ .- ..+.|||++-
T Consensus 28 ~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G~~GGy~L~ 68 (83)
T PF02082_consen 28 SKEIAERLGISPSYLRKILQKLKKAGLIESSRGRGGGYRLA 68 (83)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETSTTSEEEES
T ss_pred HHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCCCCCceeec
Confidence 4566666666666666666654 63 22 4467886653
No 305
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=26.07 E-value=52 Score=21.35 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=13.3
Q ss_pred HHHhCCCcccCCCcceEEEEeeC
Q psy788 27 ALDKAGMVPVIPDGGYFMVADWT 49 (126)
Q Consensus 27 ~l~~~g~~~~~p~gg~~~~i~~~ 49 (126)
.++.+++..++ +||||--+.-+
T Consensus 4 lI~~L~L~pHp-EGG~fret~rs 25 (139)
T PF06172_consen 4 LIAKLGLEPHP-EGGYFRETYRS 25 (139)
T ss_dssp HHHHHT-EEBT-TSSEEEEEEE-
T ss_pred HHhhCCCcCCC-CCccEEEEEEC
Confidence 34444666655 99998877654
No 306
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=25.98 E-value=3.1e+02 Score=21.07 Aligned_cols=90 Identities=11% Similarity=0.094 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc---c-cCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCC
Q psy788 10 FYTISEELRPKREILADALDKAGMV---P-VIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPS 85 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~g~~---~-~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 85 (126)
++.+-++-+++-+.+.+.+++.++- + ...-+-|-+..++.+.. -+..|...+ .++|+...-|
T Consensus 265 l~~~~~rn~~ka~~LY~~id~s~fy~~~v~~~~RS~mnV~f~~~~~~------------ld~~fv~ea-e~~gl~~lkG- 330 (365)
T COG1932 265 LEALEARNQAKAQLLYDWIDKSDFYRNLVAKANRSRMNVTFTLVDAE------------LDKGFVAEA-EAAGLIYLKG- 330 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccccchhhccceeEEEEcCcHH------------HHHHHHHHH-HHcCCceecc-
Confidence 5677888889999999999886321 1 13344555666665421 255677764 6788888777
Q ss_pred CcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHh
Q psy788 86 AFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTW 121 (126)
Q Consensus 86 ~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~ 121 (126)
.. ..+.+|+++.. +.+.++.-++=+..+
T Consensus 331 ---hr-----~vgGmRasiynA~~~e~veaL~~fm~~f 360 (365)
T COG1932 331 ---HR-----SVGGLRASIYNAVPLEDVEALTDFMDWF 360 (365)
T ss_pred ---cc-----CCCceeeeeecCCCHHHHHHHHHHHHHH
Confidence 22 24559999975 666655544444433
No 307
>KOG2825|consensus
Probab=25.78 E-value=1.2e+02 Score=22.42 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCee
Q psy788 19 PKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQ 80 (126)
Q Consensus 19 ~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~ 80 (126)
.+.+.+.+.+.+..-.+..|+..-|+.+++++...- +..+.+...|. +.+|-
T Consensus 203 ~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflsl---------yEteRliqeL~-k~~id 254 (323)
T KOG2825|consen 203 GKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSL---------YETERLIQELA-KQGID 254 (323)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCceEEEEEHHHHHhH---------HHHHHHHHHHH-hcCCc
Confidence 344444444444444567999999999999986321 13556777754 44443
No 308
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=25.38 E-value=3.2e+02 Score=21.04 Aligned_cols=39 Identities=8% Similarity=0.048 Sum_probs=26.7
Q ss_pred HHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788 68 KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN 123 (126)
Q Consensus 68 ~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~ 123 (126)
.+...+ .+.||.+ | + ++++.+.++++|++.++.|.+++.
T Consensus 366 ~~~~~l-~~~Gi~~-p-------------~--l~is~~ht~~dId~~l~~l~~~l~ 404 (431)
T PRK06209 366 LFLQET-IRRGVLM-P-------------S--LVVSYAHGDADIERTIDAVHGALG 404 (431)
T ss_pred HHHHHH-HHCCccc-c-------------c--ccccccCCHHHHHHHHHHHHHHHH
Confidence 566665 4778864 1 1 456656688889999888877654
No 309
>PRK08187 pyruvate kinase; Validated
Probab=25.29 E-value=1.3e+02 Score=24.06 Aligned_cols=29 Identities=10% Similarity=0.020 Sum_probs=22.6
Q ss_pred CCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788 95 LGENLIRYCFFK-KDETLREASSILQTWRN 123 (126)
Q Consensus 95 ~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~ 123 (126)
.|-+.+||||++ +.+..++-++.++++-+
T Consensus 158 aGmdvaRiN~SHg~~e~~~~~i~~vR~a~~ 187 (493)
T PRK08187 158 RGMDCARINCAHDDPAAWQAMIGHLRQAER 187 (493)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 367899999998 77777788887776543
No 310
>PF05550 Peptidase_C53: Pestivirus Npro endopeptidase C53; InterPro: IPR008751 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C53 (clan C-). The active site residues occur in the order E, H, C in the sequence which is unlike that in any other family. They are unique to pestiviruses. The N-terminal cysteine peptidase (Npro) encoded by the bovine viral diarrhoea virus genome is responsible for the self-cleavage that releases the N terminus of the core protein. This unique protease is dispensable for viral replication, and its coding region can be replaced by a ubiquitin gene directly fused in frame to the core [, , , ].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=25.19 E-value=44 Score=22.03 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=17.9
Q ss_pred hCCeeEeCCCCcccCcccCCCCCeEEEE
Q psy788 76 NVKLQGIPPSAFYSDEHKHLGENLIRYC 103 (126)
Q Consensus 76 ~~gV~v~pg~~f~~~~~~~~~~~~~Rl~ 103 (126)
-.||.+-||..|+++= .++-|-|..
T Consensus 78 VSGIYikpGPv~YQDY---~gpVYHRAP 102 (168)
T PF05550_consen 78 VSGIYIKPGPVFYQDY---KGPVYHRAP 102 (168)
T ss_pred cceEEecCCceeeccC---CCcccccch
Confidence 3799999999999862 345555543
No 311
>PRK14139 heat shock protein GrpE; Provisional
Probab=25.14 E-value=1e+02 Score=21.14 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCCcc
Q psy788 11 YTISEELRPKREILADALDKAGMVPVIPDGG 41 (126)
Q Consensus 11 ~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg 41 (126)
..+..=+.--++.+.+.|.++|++...|.|.
T Consensus 107 ~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G~ 137 (185)
T PRK14139 107 EKLREGVELTLKQLTSAFEKGRVVEINPVGE 137 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCceeCCCCC
Confidence 4444555555566778888889888887665
No 312
>PRK06460 hypothetical protein; Provisional
Probab=24.79 E-value=3.1e+02 Score=20.65 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhC
Q psy788 7 KCYFYTISEELRPKREILADALDKA 31 (126)
Q Consensus 7 ~~~l~~~r~~~~~r~~~l~~~l~~~ 31 (126)
.+|++...++..+++..+.+.|+++
T Consensus 237 ~~~l~~r~~~~~~n~~~l~~~L~~~ 261 (376)
T PRK06460 237 IKTLKIRMDVINRNAEQIAEFLEGH 261 (376)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 4678888999999999999999976
No 313
>PF12021 DUF3509: Protein of unknown function (DUF3509); InterPro: IPR021898 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 92 to 110 amino acids in length. This protein has two completely conserved residues (G and R) that may be functionally important.
Probab=24.71 E-value=88 Score=18.95 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=20.3
Q ss_pred HHHHHHHHhC--CCcccCCCcceEEEEeeCC
Q psy788 22 EILADALDKA--GMVPVIPDGGYFMVADWTQ 50 (126)
Q Consensus 22 ~~l~~~l~~~--g~~~~~p~gg~~~~i~~~~ 50 (126)
+++.++|..+ .+++..|+|++.+.+.=+.
T Consensus 5 q~L~~AF~py~v~~~~~rpDG~~llTL~d~~ 35 (94)
T PF12021_consen 5 QLLAEAFSPYQVNLSPPRPDGSILLTLRDEQ 35 (94)
T ss_pred HHHHHhcCcceEecccCCCCCCEEEEEEcCC
Confidence 4566777665 3566789999888876554
No 314
>PRK06739 pyruvate kinase; Validated
Probab=24.63 E-value=1.3e+02 Score=22.86 Aligned_cols=26 Identities=12% Similarity=0.350 Sum_probs=20.1
Q ss_pred CCCeEEEEeeC-ChhHHHHHHHHHHHh
Q psy788 96 GENLIRYCFFK-KDETLREASSILQTW 121 (126)
Q Consensus 96 ~~~~~Rl~~~~-~~e~i~~~~~~l~~~ 121 (126)
|-+-+||+|++ +.+...+-++.++++
T Consensus 26 Gm~v~RlNfSHGs~e~h~~~i~~vR~~ 52 (352)
T PRK06739 26 GMKIVRLNLSHGTHESHKDIIRLVKSL 52 (352)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHh
Confidence 34678999998 878878888777654
No 315
>PRK05826 pyruvate kinase; Provisional
Probab=24.50 E-value=1.4e+02 Score=23.65 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=22.0
Q ss_pred CCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788 96 GENLIRYCFFK-KDETLREASSILQTWRN 123 (126)
Q Consensus 96 ~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~ 123 (126)
|-+.+|++|++ +.+...+-++.++++-+
T Consensus 29 G~~v~RiN~sHg~~~~~~~~i~~ir~~~~ 57 (465)
T PRK05826 29 GVNVVRLNFSHGSHEEHGKRAALVREIAA 57 (465)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 45789999998 78888888888876544
No 316
>cd04751 Commd3 COMM_Domain containing protein 3. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=24.02 E-value=1.3e+02 Score=17.96 Aligned_cols=24 Identities=17% Similarity=0.047 Sum_probs=20.3
Q ss_pred EEEEeeCChhHHHHHHHHHHHhhh
Q psy788 100 IRYCFFKKDETLREASSILQTWRN 123 (126)
Q Consensus 100 ~Rl~~~~~~e~i~~~~~~l~~~~~ 123 (126)
-++.|.++.++++.-+..|.++.+
T Consensus 65 ~~i~f~c~~e~L~~Li~~Lk~A~~ 88 (95)
T cd04751 65 PDINFTCTLEQLQDLVNKLKDAAK 88 (95)
T ss_pred ceEEEEeCHHHHHHHHHHHHHHHH
Confidence 378999999999999999987754
No 317
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=23.76 E-value=2.1e+02 Score=20.41 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=32.9
Q ss_pred HHHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788 21 REILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS 89 (126)
Q Consensus 21 ~~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~ 89 (126)
...+.++..++|+.. +|-|| +++.. -.++.+-++ ++||--+-...|++
T Consensus 166 ~~avA~aca~~g~~l-EPTGG----Idl~N---------------f~~I~~i~l-daGv~kviPHIYss 213 (236)
T TIGR03581 166 YAAVAKACAKHGFYL-EPTGG----IDLDN---------------FEEIVQIAL-DAGVEKVIPHVYSS 213 (236)
T ss_pred HHHHHHHHHHcCCcc-CCCCC----ccHHh---------------HHHHHHHHH-HcCCCeecccccee
Confidence 345677777778865 99999 66553 335666654 88998666677775
No 318
>PF14530 DUF4439: Domain of unknown function (DUF4439); PDB: 2IB0_B.
Probab=23.65 E-value=1.8e+02 Score=18.67 Aligned_cols=34 Identities=32% Similarity=0.454 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcce
Q psy788 9 YFYTISEELRPKREILADALDKAGMVPVIPDGGY 42 (126)
Q Consensus 9 ~l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~gg~ 42 (126)
-+.......+.+|+.+...|...|.....|+.||
T Consensus 30 ~~~~~~~~HR~rRd~l~~~l~~~g~~~p~~~aaY 63 (131)
T PF14530_consen 30 AARAALAAHRARRDALAAALRAAGATPPPPEAAY 63 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-------SS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Confidence 3556667788899999999988788888899995
No 319
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=23.63 E-value=3.6e+02 Score=21.04 Aligned_cols=44 Identities=18% Similarity=0.127 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEE--EeeCChhHHHHHHHHHHHhhh
Q psy788 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRY--CFFKKDETLREASSILQTWRN 123 (126)
Q Consensus 67 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl--~~~~~~e~i~~~~~~l~~~~~ 123 (126)
..+...+ .+.||.+.|. + +.+|+ ++..+++++++++++|.++++
T Consensus 409 ~~i~~~~-~~~Gvl~~~~---g---------~~l~~~Ppl~it~~~id~~~~~l~~~l~ 454 (460)
T PRK06916 409 VQVCKRS-RELGMLTRPL---G---------NTIVFMPPLASTIDELDEMLRILYKAIS 454 (460)
T ss_pred HHHHHHH-HHCCeEEEec---C---------CEEEEeCCcccCHHHHHHHHHHHHHHHH
Confidence 3566665 4889998762 1 23555 455688999999999988875
No 320
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=23.43 E-value=3.6e+02 Score=21.03 Aligned_cols=101 Identities=15% Similarity=0.127 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-ceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcc
Q psy788 10 FYTISEELRPKREILADALDKAGMVPVIPDG-GYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFY 88 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~g~~~~~p~g-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~ 88 (126)
++...+..-+|-+.|.+.|.+.|+++..... +=.+.+++...+ + +... +..++.+.||.+.--...+
T Consensus 282 fk~Ya~qVv~NAkaLAe~l~~~G~~vvsGgTdnHl~lVDl~~~~--~---------~Gk~-ae~~L~~~~It~NKN~iP~ 349 (413)
T COG0112 282 FKEYAKQVVKNAKALAEALKERGFKVVSGGTDNHLVLVDLRSKG--L---------TGKK-AEAALERAGITVNKNAIPF 349 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeEecCCccceEEEEEcccCC--C---------CHHH-HHHHHHHcCEeeccCCCCC
Confidence 3555666777888899999988888755211 224456776211 1 1333 3445678899977655544
Q ss_pred cCcccCCCCCeEEEEee------CChhHHHHHHHHHHHhhh
Q psy788 89 SDEHKHLGENLIRYCFF------KKDETLREASSILQTWRN 123 (126)
Q Consensus 89 ~~~~~~~~~~~~Rl~~~------~~~e~i~~~~~~l~~~~~ 123 (126)
...+ +..+..+||+-. ..++++++-.+.|.+++.
T Consensus 350 D~~~-p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~ 389 (413)
T COG0112 350 DPES-PFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLD 389 (413)
T ss_pred CCCC-CCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHh
Confidence 3221 234678999653 255566666665555544
No 321
>PRK07480 putative aminotransferase; Validated
Probab=23.15 E-value=3.7e+02 Score=20.98 Aligned_cols=43 Identities=5% Similarity=-0.244 Sum_probs=30.7
Q ss_pred HHHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeC--ChhHHHHHHHHHHHhhh
Q psy788 68 KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFK--KDETLREASSILQTWRN 123 (126)
Q Consensus 68 ~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~--~~e~i~~~~~~l~~~~~ 123 (126)
.+...+ .++||.+.|. + +.+||+-.. ++++|++++++|.++++
T Consensus 403 ~~~~~~-~~~Gll~~~~---~---------~~l~~~Ppl~it~~eid~~~~~l~~al~ 447 (456)
T PRK07480 403 ICRDHC-FANGLIMRAV---G---------DRMIISPPLVITHAEIDELVEKARKALD 447 (456)
T ss_pred HHHHHH-HHCCcEEeec---C---------CEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 455554 4889998651 1 347776664 88999999999988765
No 322
>COG3309 VapD Uncharacterized virulence-associated protein D [Function unknown]
Probab=23.09 E-value=1.7e+02 Score=17.78 Aligned_cols=26 Identities=15% Similarity=0.387 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhCCCcccCCCcceEE
Q psy788 17 LRPKREILADALDKAGMVPVIPDGGYFM 44 (126)
Q Consensus 17 ~~~r~~~l~~~l~~~g~~~~~p~gg~~~ 44 (126)
|..-++-+...|.++|+. ..+|+.|+
T Consensus 21 ~~~aY~Dir~~L~~~gF~--~tQGSVYl 46 (96)
T COG3309 21 YRQAYDDIRRVLERHGFE--NTQGSVYL 46 (96)
T ss_pred HHHHHHHHHHHHHHcCcc--cccceEEE
Confidence 334444456666666666 67788665
No 323
>PTZ00039 40S ribosomal protein S20; Provisional
Probab=22.97 E-value=1.7e+02 Score=18.45 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=22.9
Q ss_pred CeEEEEeeC-ChhHHHHHHHHHHHhhhc
Q psy788 98 NLIRYCFFK-KDETLREASSILQTWRNK 124 (126)
Q Consensus 98 ~~~Rl~~~~-~~e~i~~~~~~l~~~~~~ 124 (126)
..+||.+.+ +...++..++.|.+..++
T Consensus 17 ~kirI~L~S~d~~~Ld~~~~~Ii~~ak~ 44 (115)
T PTZ00039 17 HKIRITLTSKNLKSIEKVCADIITGAKE 44 (115)
T ss_pred eEEEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 579999986 889999999999887663
No 324
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=22.67 E-value=1.3e+02 Score=21.14 Aligned_cols=47 Identities=21% Similarity=0.322 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCccc
Q psy788 22 EILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYS 89 (126)
Q Consensus 22 ~~l~~~l~~~g~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~ 89 (126)
..+.++..+.|+.. +|-|| +++.. -.++.+-++ ++||..+-...|++
T Consensus 167 ~avAkA~a~~g~~l-EPTGG----Idl~N---------------~~~I~~i~l-~aGv~~viPHiYss 213 (218)
T PF07071_consen 167 KAVAKACARNGFTL-EPTGG----IDLDN---------------FEEIVKICL-DAGVEKVIPHIYSS 213 (218)
T ss_dssp HHHHHHHHHCT-EE-EEBSS------TTT---------------HHHHHHHHH-HTT-S-B--EE-GG
T ss_pred HHHHHHHHHcCcee-CCcCC----cCHHH---------------HHHHHHHHH-HcCCCeeccchhhh
Confidence 34666666778888 99999 66654 335666654 78887655555543
No 325
>PRK06247 pyruvate kinase; Provisional
Probab=22.42 E-value=1.6e+02 Score=23.45 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=21.1
Q ss_pred CCCeEEEEeeC-ChhHHHHHHHHHHHhh
Q psy788 96 GENLIRYCFFK-KDETLREASSILQTWR 122 (126)
Q Consensus 96 ~~~~~Rl~~~~-~~e~i~~~~~~l~~~~ 122 (126)
|-+.+|+||++ +.+...+-++.++++-
T Consensus 30 Gm~v~RlN~SHg~~e~~~~~i~~vr~~~ 57 (476)
T PRK06247 30 GADVFRLNFSHGDHDDHRELYKRIREVE 57 (476)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 45789999998 7777778777777654
No 326
>KOG1401|consensus
Probab=22.16 E-value=3.9e+02 Score=20.97 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=16.3
Q ss_pred EEeeCChhHHHHHHHHHHHhhh
Q psy788 102 YCFFKKDETLREASSILQTWRN 123 (126)
Q Consensus 102 l~~~~~~e~i~~~~~~l~~~~~ 123 (126)
++..+++|.++..++.+.+.+.
T Consensus 408 l~~~~~~E~i~~~l~i~~~~l~ 429 (433)
T KOG1401|consen 408 LTVEHTPEVIQRLLTILEKVLS 429 (433)
T ss_pred ccccCcHHHHHHHHHHHHHHHH
Confidence 3444468889999998887765
No 327
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=22.06 E-value=1.8e+02 Score=17.02 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhCCCcccCCCcceEEEEeeC
Q psy788 18 RPKREILADALDKAGMVPVIPDGGYFMVADWT 49 (126)
Q Consensus 18 ~~r~~~l~~~l~~~g~~~~~p~gg~~~~i~~~ 49 (126)
.+|.+.+.+.+..+|+.+.. |-+++.+...
T Consensus 45 ~~R~~~l~~il~~~gv~~~~--~el~~~~~~~ 74 (90)
T PF08861_consen 45 KKRKKILNSILNGFGVELDE--GELFIKTSEE 74 (90)
T ss_pred hHHHHHHHHHHHHcCccccC--CEEEEEeCHH
Confidence 45667788888877888766 8887766544
No 328
>PF14056 DUF4250: Domain of unknown function (DUF4250)
Probab=21.90 E-value=41 Score=18.28 Aligned_cols=34 Identities=12% Similarity=0.073 Sum_probs=24.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCccc
Q psy788 3 TAPDKCYFYTISEELRPKREILADALDKAGMVPV 36 (126)
Q Consensus 3 ~~~~~~~l~~~r~~~~~r~~~l~~~l~~~g~~~~ 36 (126)
|+..-.-++.++..|.-..+.+.+.|..+|+.+.
T Consensus 16 LRD~~~sLd~Lc~~~~id~~~l~~kL~~~Gy~Y~ 49 (55)
T PF14056_consen 16 LRDEYSSLDELCYDYDIDKEELEEKLASIGYEYD 49 (55)
T ss_pred HHhccCCHHHHHHHhCCCHHHHHHHHHHcCCeEc
Confidence 3343345778888888888888888887776653
No 329
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=21.78 E-value=1.6e+02 Score=23.20 Aligned_cols=27 Identities=19% Similarity=0.168 Sum_probs=21.2
Q ss_pred CCCeEEEEeeC-ChhHHHHHHHHHHHhh
Q psy788 96 GENLIRYCFFK-KDETLREASSILQTWR 122 (126)
Q Consensus 96 ~~~~~Rl~~~~-~~e~i~~~~~~l~~~~ 122 (126)
|-+.+|+||++ +.+...+-++.++++-
T Consensus 26 G~~~~R~N~shg~~~~~~~~i~~ir~~~ 53 (473)
T TIGR01064 26 GMNVARLNFSHGSHEEHGKRIENVREAA 53 (473)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 45789999998 7787788888777654
No 330
>PF01930 Cas_Cas4: Domain of unknown function DUF83; InterPro: IPR022765 This entry represents an uncharacterised domain found in several proteins, including DNA replication helicase Dna2, clustered regularly interspaced short palindromic repeats (CRISPR)-associated exonuclease Cas4 and putative RecB family exonuclease proteins.
Probab=21.47 E-value=2e+02 Score=18.53 Aligned_cols=50 Identities=4% Similarity=0.022 Sum_probs=33.5
Q ss_pred HHHHHHHhCCeeEeCCCCcccCcccCCCCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788 69 FAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFK-KDETLREASSILQTWRN 123 (126)
Q Consensus 69 ~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~ 123 (126)
+.-.|+...|+.+.-|..++.. .....++-+.. ....+.+.++++.++++
T Consensus 88 ~Y~~lL~~~g~~v~~G~i~y~~-----~~~~~~v~~~~~~~~~v~~~i~~i~~~~~ 138 (162)
T PF01930_consen 88 AYALLLEEFGIPVKRGYIYYIE-----DRKRVRVEITEELRRKVEKLIEEIRKILE 138 (162)
T ss_pred HHHHHHHhcCccceeEEEEEec-----CCeEEEEeCCHHHHHHHHHHHHHHHHHHh
Confidence 3444566789988888877764 34566766664 44567777777777665
No 331
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=21.39 E-value=1.7e+02 Score=23.25 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=20.8
Q ss_pred CCCeEEEEeeC-ChhHHHHHHHHHHHhh
Q psy788 96 GENLIRYCFFK-KDETLREASSILQTWR 122 (126)
Q Consensus 96 ~~~~~Rl~~~~-~~e~i~~~~~~l~~~~ 122 (126)
|-+.+||+|++ +.+...+-++.++++-
T Consensus 27 G~~v~RiN~sHg~~~~~~~~i~~vr~~~ 54 (480)
T cd00288 27 GMNVARMNFSHGSHEYHQSRIDNVREAA 54 (480)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 45689999998 7777778777777653
No 332
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=20.76 E-value=44 Score=22.49 Aligned_cols=23 Identities=17% Similarity=-0.010 Sum_probs=17.0
Q ss_pred hCCeeEeCCCCcccCcccCCCCCeEEEEeeC
Q psy788 76 NVKLQGIPPSAFYSDEHKHLGENLIRYCFFK 106 (126)
Q Consensus 76 ~~gV~v~pg~~f~~~~~~~~~~~~~Rl~~~~ 106 (126)
+-.+.++||-+|-. ..-|++++.
T Consensus 109 ~iDlviVP~laFD~--------~G~RLG~Gg 131 (182)
T PRK10333 109 RLDVLITPLVAFDE--------YGQRLGMGG 131 (182)
T ss_pred cCCEEEeCceEECC--------CCCcccCCc
Confidence 44799999999963 234888876
No 333
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=20.63 E-value=1.5e+02 Score=23.01 Aligned_cols=15 Identities=27% Similarity=0.270 Sum_probs=11.3
Q ss_pred CCeEEEEeeC-ChhHH
Q psy788 97 ENLIRYCFFK-KDETL 111 (126)
Q Consensus 97 ~~~~Rl~~~~-~~e~i 111 (126)
++.+|||++. +.|+|
T Consensus 402 ~~liRlsvGlE~~~dl 417 (433)
T PRK08134 402 EGTIRLSIGLEDADDL 417 (433)
T ss_pred CCeEEEEeccCCHHHH
Confidence 5799999997 44443
No 334
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=20.40 E-value=82 Score=17.24 Aligned_cols=40 Identities=15% Similarity=0.163 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC---CCcccCCCcceEEEEeeC
Q psy788 10 FYTISEELRPKREILADALDKA---GMVPVIPDGGYFMVADWT 49 (126)
Q Consensus 10 l~~~r~~~~~r~~~l~~~l~~~---g~~~~~p~gg~~~~i~~~ 49 (126)
...+.+.+.-.+..+.+.+... |+.+..+..||++....+
T Consensus 16 ~~eLa~~l~vS~~tv~~~l~~L~~~g~~i~~~~~g~~l~~~~~ 58 (69)
T TIGR00122 16 GEKLGEALGMSRTAVNKHIQTLREWGVDVLTVGKGYRLPPPIP 58 (69)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCeEEecCCceEecCccc
Confidence 4555555555555565555543 777766677877654443
No 335
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=20.09 E-value=4.5e+02 Score=20.82 Aligned_cols=94 Identities=10% Similarity=-0.017 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHh-C-C--CcccCCCcceEEEEeeCCcccccccCCCCCchhhHHHHHHHHHhCCeeEeCCCCcccCc
Q psy788 16 ELRPKREILADALDK-A-G--MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDE 91 (126)
Q Consensus 16 ~~~~r~~~l~~~l~~-~-g--~~~~~p~gg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~ 91 (126)
+.++.-..+.+.|++ + + ..-..=.-|+..-+++...... ..+- +..-...+... ..++||.+.|. +.
T Consensus 345 ~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t-~~~f--~~~~~~~~~~~-~~e~Gl~iRp~---g~-- 415 (449)
T COG0161 345 RVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKAT-KTPF--EARVGARVRAA-ALERGLLIRPL---GD-- 415 (449)
T ss_pred HHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEeccccc-ccch--hhhHHHHHHHH-HHHCCeEEeec---CC--
Confidence 333444455555554 2 1 1112234477777887542110 0000 00113345555 46999999996 31
Q ss_pred ccCCCCCeEEEEeeCChhHHHHHHHHHHHhhh
Q psy788 92 HKHLGENLIRYCFFKKDETLREASSILQTWRN 123 (126)
Q Consensus 92 ~~~~~~~~~Rl~~~~~~e~i~~~~~~l~~~~~ 123 (126)
.-++-=.|+.+++++++-++++.+.++
T Consensus 416 -----~i~~~PPliit~~eid~l~~~l~~al~ 442 (449)
T COG0161 416 -----VIYLMPPLIITREEIDELVDALREALD 442 (449)
T ss_pred -----EEEEcCCccCCHHHHHHHHHHHHHHHH
Confidence 112223445578999999999988775
No 336
>PLN02461 Probable pyruvate kinase
Probab=20.09 E-value=1.8e+02 Score=23.30 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=21.7
Q ss_pred CCCeEEEEeeC-ChhHHHHHHHHHHHhhh
Q psy788 96 GENLIRYCFFK-KDETLREASSILQTWRN 123 (126)
Q Consensus 96 ~~~~~Rl~~~~-~~e~i~~~~~~l~~~~~ 123 (126)
|-+-+|++|++ +.+...+-++.++++.+
T Consensus 46 Gm~v~RlN~SHg~~e~h~~~i~~vr~~~~ 74 (511)
T PLN02461 46 GMNVARFNFSHGSHEYHQETLDNLRQAMA 74 (511)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 45789999998 77777888877776544
Done!