RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy788
(126 letters)
>gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional.
Length = 387
Score = 73.9 bits (182), Expect = 1e-16
Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 26/135 (19%)
Query: 2 TTAP------------DKCYFYTISEELRPKREILADALDKAGMVPVIPDGG-YFMVADW 48
TT P YF + +L R+ LA L + G PV+P G YF+ D
Sbjct: 264 TTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRIGF-PVLPSQGTYFLTVD- 321
Query: 49 TQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKD 108
L P L D D F + + + + IP SAFY ++ +++R+CF K+D
Sbjct: 322 --LAP---LGLAED---DVAFCRRLVEEAGVAAIPVSAFYEEDPV---TSVVRFCFAKRD 370
Query: 109 ETLREASSILQTWRN 123
TL EA L R
Sbjct: 371 ATLDEAVERLAAARR 385
>gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated.
Length = 386
Score = 71.9 bits (177), Expect = 5e-16
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 19/110 (17%)
Query: 10 FYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKF 69
FY + KR+ AL + + +G YF + D++ + SD +D +F
Sbjct: 294 FY------QAKRDRFRAALANSRFKLLPCEGTYFQLVDYSAI---------SD-LDDVEF 337
Query: 70 AKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQ 119
+W+T+ + IP S FY+D H L+R CF K++ETL A+ L
Sbjct: 338 CQWLTREHGVAAIPLSVFYADPFPH---RLVRLCFAKQEETLDAAAERLC 384
>gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated.
Length = 387
Score = 67.8 bits (166), Expect = 2e-14
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 9 YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED-F 67
+ + + L+ KR+ LA L +AG G YF+ AD L Y+D
Sbjct: 283 WVAALRDSLQAKRDRLAAGLAEAGFEVHDSAGTYFLCADPRPLG-----------YDDGT 331
Query: 68 KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWR 122
+F + + + V + IP S FY + +L+R+ F K+D+TL EA L+ R
Sbjct: 332 EFCRALPERVGVAAIPMSVFY--DPADAWNHLVRFAFCKRDDTLDEAIRRLRALR 384
>gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional.
Length = 413
Score = 61.8 bits (150), Expect = 2e-12
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 13/117 (11%)
Query: 4 APDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDK 63
AP+ Y+ + + K++IL + L + G G YF++ D T
Sbjct: 306 APES-YYEELKRDYSAKKDILVEGLKEVGFKVYPSSGTYFVMVDHTPF----------GF 354
Query: 64 YEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQT 120
D F +++ + V + IPPS FY + G+NL+R+ F K +ETLR A ++T
Sbjct: 355 ENDIAFCEYLIEEVGVAAIPPSVFYLNPED--GKNLVRFAFCKDEETLRAAVERMKT 409
>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 53.8 bits (130), Expect = 1e-09
Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 18/121 (14%)
Query: 6 DKCYFYTISEELRPKREILADALDKAGMVPVI--PDGGYFMVADWTQLRPMLRLDTESDK 63
+ EE R +R++L +AL++ G + V+ P+G +++ +
Sbjct: 287 SDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKI------------PEL 334
Query: 64 YEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRN 123
+ +FAK + + + +P S F GE +R +ETL EA L +
Sbjct: 335 LDSEEFAKKLLEEAGVAVVPGSGFGEPP----GEGYVRLSLATSEETLEEALRRLARFLA 390
Query: 124 K 124
+
Sbjct: 391 E 391
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 49.6 bits (119), Expect = 4e-08
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 19/107 (17%)
Query: 9 YFYTISEELRPKREILADALDKAG-MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDF 67
+ + E R +R+ L +AL + G +V V P GG+F+ W L + +D
Sbjct: 256 HLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFL---WLDLP----------EGDDE 302
Query: 68 KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREA 114
+F + + + P SAF GE +R F +E L EA
Sbjct: 303 EFLERLLLEAGVVVRPGSAFGE-----GGEGFVRLSFATPEEELEEA 344
>gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional.
Length = 397
Score = 46.0 bits (110), Expect = 9e-07
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 27/123 (21%)
Query: 6 DKCYFYTISEELRPKREILADALDK-AGMVPVIPDGGYFMVADWTQLRPMLRL---DTES 61
+ YF + EE + +R+IL + L+K G+V P G ++++A +L D E
Sbjct: 283 PESYFDEVREEYKKRRDILYEELNKIPGVVCEKPKGAFYIIA---------KLPVDDAE- 332
Query: 62 DKYEDFKFAKWMTKNVKLQG-----IPPSAFYSDEHKHLGENLIRYCFFKKDETLREASS 116
FAKW+ + G P S FY+ LG+N IR + +E L+ A
Sbjct: 333 ------DFAKWLLTDFNYNGETVMVAPASGFYATPG--LGKNEIRIAYVLNEEDLKRAME 384
Query: 117 ILQ 119
IL+
Sbjct: 385 ILK 387
>gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional.
Length = 384
Score = 45.9 bits (109), Expect = 1e-06
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 17/101 (16%)
Query: 20 KREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKL 79
KR++LA L + + +G +FM+A + ESD F + ++ ++
Sbjct: 296 KRDLLARELAGSRFELLPSEGSFFMLARFR------HFSDESDS----DFVLRLIRDARV 345
Query: 80 QGIPPSAFYSDEHKHLGEN--LIRYCFFKKDETLREASSIL 118
IP SAFY+D G + LIR F K D TL E + L
Sbjct: 346 ATIPLSAFYTD-----GTDTGLIRLSFSKDDATLVEGARRL 381
>gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional.
Length = 382
Score = 36.1 bits (84), Expect = 0.002
Identities = 29/108 (26%), Positives = 40/108 (37%), Gaps = 18/108 (16%)
Query: 15 EELRPKREILADALDKAGMVPVI-PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWM 73
LR R+ L DAL V V PDG + R+ +D AK +
Sbjct: 289 ARLRRSRDHLVDALRALPGVEVAKPDGAMYA---------FFRIPGVTDS---LALAKRL 336
Query: 74 TKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW 121
L P +AF GE +R+CF + L EA L+ +
Sbjct: 337 VDEAGLGLAPGTAFGPG-----GEGFLRWCFARDPARLDEAVERLRRF 379
>gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated.
Length = 388
Score = 33.5 bits (77), Expect = 0.015
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 15 EELRPKREILADALDKAGM-VPVIPDGGYFMVADWTQL 51
E + +R+ + AL+ G VPV+PDG +++ AD +
Sbjct: 290 AEFKRRRDFIVPALESLGFKVPVMPDGAFYVYADCRGV 327
>gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding
HTH domain and an aminotransferase domain (MocR family)
and their eukaryotic orthologs [Transcription / Amino
acid transport and metabolism].
Length = 459
Score = 31.5 bits (72), Expect = 0.076
Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 20/114 (17%)
Query: 15 EELRPKREILADALDKAGMVPVI---PDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAK 71
E +R+ L +AL + P+GG F+ W L L D E A
Sbjct: 357 REYARRRDALLEALAEYLPELATWTRPEGGLFL---W------LELPEGIDARELLAAAL 407
Query: 72 WMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF-FKKDETLREASSIL-QTWRN 123
K V + P + +S + N +R F +E + E L R
Sbjct: 408 --EKGVVVT--PLGSAFSADGD--PRNGLRLSFSSPSEEEIEEGIKRLAALLRE 455
>gnl|CDD|219353 pfam07261, DnaB_2, Replication initiation and membrane attachment.
This family consists of several bacterial replication
initiation and membrane attachment (DnaB) proteins, as
well as DnaD which is a component of the PriA primosome.
The PriA primosome functions to recruit the replication
fork helicase onto the DNA. The DnaB protein is
essential for both replication initiation and membrane
attachment of the origin region of the chromosome and
plasmid pUB110 in Bacillus subtilis. It is known that
there are two different classes (DnaBI and DnaBII) in
the DnaB mutants; DnaBI is essential for both chromosome
and pUB110 replication, whereas DnaBII is necessary only
for chromosome replication. DnaD has been merged into
this family. This family also includes Ftn6, a
cyanobacterial-specific divisome component possibly
playing a role at the interface between DNA replication
and cell division. Ftn6 possesses a conserved domain
localised within the N-terminus of the proteins. This
domain, named FND, exhibits sequence and structure
similarities with the DnaD-like domains pfam04271 now
merged into pfam07261.
Length = 77
Score = 29.5 bits (67), Expect = 0.12
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 99 LIRYCFFKKDETLREASSILQTWRNKNI 126
++Y +L+ IL+ W+ K I
Sbjct: 38 ALKYAVENNKRSLKYIEKILRNWKRKGI 65
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 30.0 bits (68), Expect = 0.28
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 21/95 (22%)
Query: 21 REILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQ 80
R+ L D L+ AG+ + G+F++ D A+ + + V +
Sbjct: 279 RDYLRDGLEAAGLSVLPSQAGFFLLTGL-------------DPEAALALAQVLLEEVGVY 325
Query: 81 GIPPSAFYSDEHKHLGENLIRYCFF-KKDETLREA 114
P S+F G +R +E L E
Sbjct: 326 VTPGSSFG-------GPGWLRITVAGGTEEELEEL 353
>gnl|CDD|180433 PRK06157, PRK06157, acetyl-CoA acetyltransferase; Validated.
Length = 398
Score = 28.8 bits (65), Expect = 0.60
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 13 ISEELRPKREILADALDKAGMVPVIPDGG 41
+SE + R++L D G +P DGG
Sbjct: 310 LSERGQAWRDVLDGFFDADGGLPCQIDGG 338
>gnl|CDD|211372 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of medium Mu3B subunit
in neuron-specific adaptor protein (AP) complex AP-3.
AP complexes participate in the formation of
intracellular coated transport vesicles and select cargo
molecules for incorporation into the coated vesicles in
the late secretory and endocytic pathways. There are
four AP complexes, AP-1, AP-2, AP-3, and AP-4, described
in various eukaryotic organisms. Each AP complex
consists of four subunits: two large chains (one each of
gamma/alpha/delta/epsilon and beta1-4, respectively), a
medium mu chain (mu1-4), and a small sigma chain
(sigma1-4). Each of the four subunits from the different
AP complexes exhibits similarity with each other. This
subfamily corresponds to the C-terminal domain of
heterotetrameric adaptor protein complex 3 (AP-3) medium
mu3B subunit encoded by ap3m2 gene. Mu3B is specifically
expressed in neurons and neuroendocrine cells.
Neuron-specific AP-3 appears to be involved in synaptic
vesicle biogenesis from endosomes in neurons and plays
an important role in synaptic transmission in the
central nervous system. Unlike AP-1 and AP-2, which
function in conjunction with clathrin which is a
scaffolding protein participating in the formation of
coated vesicles, the nature of the outer shell of
neuron-specific AP-3 containing coats remains to be
elucidated. Membrane-anchored cargo molecules interact
with adaptors through short sorting signals in their
cytosolic segments. Tyrosine-based endocytotic signals
are one of the most important sorting signals. They are
of the form Y-X-X-Phi, where Y is tyrosine, X is any
amino acid and Phi is a bulky hydrophobic residue that
can be Leu, Ile, Met, Phe, or Val. These kinds of
sorting signals can be recognized by the C-terminal
domain of AP-3 mu3B subunit, also known as Y-X-X-Phi
signal-binding domain that contains two hydrophobic
pockets, one for the tyrosine-binding and one for the
bulky hydrophobic residue-binding.
Length = 254
Score = 28.5 bits (63), Expect = 1.00
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 56 RLDTESDKYEDFKFAKWMTKNVKLQ 80
RLD +KY+ FK K+MTK K Q
Sbjct: 227 RLDMYGEKYKPFKGIKYMTKAGKFQ 251
>gnl|CDD|225705 COG3164, COG3164, Predicted membrane protein [Function unknown].
Length = 1271
Score = 28.6 bits (64), Expect = 1.0
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 4 APDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYF---MVADWTQLRPMLRLDT 59
P++ +ELR I A LD A + P+IP ++ W +P R+ T
Sbjct: 324 LPEQDVGRENHKELR----IRASNLDLAPLEPLIPLAAPLPPDLLDWWRSTQPPGRILT 378
>gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional.
Length = 394
Score = 28.2 bits (64), Expect = 1.1
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 20 KREILADALDKAGMVPVIPDGGYFM 44
R++L D L + G V P G +++
Sbjct: 308 NRDLLYDGLTELGFECVKPQGAFYL 332
>gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional.
Length = 391
Score = 27.9 bits (62), Expect = 1.4
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 68 KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREA 114
FA+W+ + ++ IP +AF GE IR + E L EA
Sbjct: 339 DFAEWLLEKARVVVIPGTAF-----GKAGEGYIRISYATSKEKLIEA 380
>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase;
Reviewed.
Length = 486
Score = 27.5 bits (62), Expect = 1.9
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Query: 25 ADALDKAGMVPVIPDGG 41
A+A K G +PVI DGG
Sbjct: 324 AEAAKKYG-IPVIADGG 339
>gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional.
Length = 387
Score = 26.6 bits (59), Expect = 3.9
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 15 EELRPKREILADALDKAGM-VPVIPDGGYFMVADWTQL 51
E +R+ L AL + G + V P G +++ AD +
Sbjct: 292 AEFARRRDFLLPALRELGFGIAVEPQGAFYLYADISAF 329
>gnl|CDD|211371 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of medium Mu3A subunit
in ubiquitously expressed adaptor protein (AP) complex
AP-3. AP complexes participate in the formation of
intracellular coated transport vesicles and select cargo
molecules for incorporation into the coated vesicles in
the late secretory and endocytic pathways. There are
four AP complexes, AP-1, AP-2, AP-3, and AP-4, described
in various eukaryotic organisms. Each AP complex
consists of four subunits: two large chains (one each of
gamma/alpha/delta/epsilon and beta1-4, respectively), a
medium mu chain (mu1-4), and a small sigma chain
(sigma1-4). Each of the four subunits from the different
AP complexes exhibits similarity with each other. This
subfamily corresponds to the C-terminal domain of
heterotetrameric adaptor protein complex 3 (AP-3) medium
mu3A subunit encoded by ap3m1gene. Mu3A is ubiquitously
expressed in all mammalian tissues and cells. It appears
to be localized to the trans-Golgi network (TGN) and/or
endosomes and participates in trafficking to the
vacuole/lysosome in yeast, flies, and mammals. Unlike
AP-1 and AP-2, which function in conjunction with
clathrin which is a scaffolding protein participating in
the formation of coated vesicles, the nature of the
outer shell of ubiquitous AP-3 containing coats remains
to be elucidated. Membrane-anchored cargo molecules
interact with adaptors through short sorting signals in
their cytosolic segments. Tyrosine-based endocytotic
signals are one of the most important sorting signals.
They are of the form Y-X-X-Phi, where Y is tyrosine, X
is any amino acid and Phi is a bulky hydrophobic residue
that can be Leu, Ile, Met, Phe, or Val. These kinds of
sorting signals can be recognized by the C-terminal
domain of AP-3 mu3A subunit, also known as Y-X-X-Phi
signal-binding domain that contains two hydrophobic
pockets, one for the tyrosine-binding and one for the
bulky hydrophobic residue-binding.
Length = 254
Score = 26.2 bits (57), Expect = 4.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 56 RLDTESDKYEDFKFAKWMTKNVKLQ 80
RLD +KY+ FK K++TK K Q
Sbjct: 227 RLDMYGEKYKPFKGVKYITKAGKFQ 251
>gnl|CDD|238629 cd01304, FMDH_A, Formylmethanofuran dehydrogenase (FMDH) subunit A;
Methanogenic bacteria and archea derive the energy for
autotrophic growth from methanogenesis, the reduction of
CO2 with molecular hydrogen as the electron donor. FMDH
catalyzes the first step in methanogenesis, the
formyl-methanofuran synthesis. In this step, CO2 is
bound to methanofuran and subsequently reduced to the
formyl state with electrons derived from hydrogen.
Length = 541
Score = 26.2 bits (58), Expect = 5.1
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 34 VPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQGI 82
P++ G Y ++ + + LR D + +K + W K K GI
Sbjct: 131 TPILDKGAYPLLGNNWFVLEYLR-DGDMEKLAA--YVAWTLKASKGYGI 176
>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.
Length = 547
Score = 26.4 bits (59), Expect = 5.2
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
Query: 38 PDGGYFMVADW--------TQLRPMLRLDTESDKYED 66
PDG Y + ADW + LR ML L+ E +ED
Sbjct: 166 PDGPYTLEADWVIACDGARSPLREMLGLEFEGRTFED 202
>gnl|CDD|178005 PLN02379, PLN02379, pfkB-type carbohydrate kinase family protein.
Length = 367
Score = 25.9 bits (57), Expect = 6.4
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 51 LRPML----RLDTESDKYEDFKFAKWMTKNVKLQGI 82
+RP L +L + EDFK +KW+ +
Sbjct: 155 MRPCLSSAVKLQADELTKEDFKGSKWLVLRYGFYNL 190
>gnl|CDD|200354 TIGR04103, rSAM_nif11_3, nif11-class peptide radical SAM maturase
3. Members of this protein family are
peptide-modifying radical SAM enzymes, with a
C-terminal additional 4Fe-4S cluster binding domain
like many other peptide-modifying radical SAM enzymes.
This form occurs primarily in the genera Cyanothece and
Nostoc.
Length = 412
Score = 26.1 bits (57), Expect = 7.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 17 LRPKREILADALDKAGMVPVIPDGGYFMVADWTQ 50
LRP +A A+ +AGM+ + GGY + Q
Sbjct: 63 LRPDWLEIAAAITRAGMICGMTTGGYGISLQLAQ 96
>gnl|CDD|236925 PRK11544, hycI, hydrogenase 3 maturation protease; Provisional.
Length = 156
Score = 25.3 bits (56), Expect = 8.3
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 16 ELRPKREILADALD---KAGMVPVIP 38
ELRP+R ++ DA D G + +I
Sbjct: 52 ELRPERLLIVDATDMGLNPGEIRIID 77
>gnl|CDD|182737 PRK10794, PRK10794, cell wall shape-determining protein;
Provisional.
Length = 370
Score = 25.9 bits (57), Expect = 8.4
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 21 REILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESD 62
R I + A +P++ +F++ D+ + R M+ LD ESD
Sbjct: 182 RLIGVAVVLVAAFIPIL---WFFLMHDYQRQRVMMLLDPESD 220
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.425
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,621,071
Number of extensions: 574839
Number of successful extensions: 562
Number of sequences better than 10.0: 1
Number of HSP's gapped: 546
Number of HSP's successfully gapped: 35
Length of query: 126
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 41
Effective length of database: 7,167,512
Effective search space: 293867992
Effective search space used: 293867992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)