RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy788
(126 letters)
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 147 bits (372), Expect = 7e-44
Identities = 66/117 (56%), Positives = 87/117 (74%)
Query: 8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDF 67
CYF +IS EL KR+ +A L + GM P +P GGYFMVADW+ L + L E+D +D+
Sbjct: 312 CYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDY 371
Query: 68 KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124
+F KWMTK+V LQGIPPSAFYS+ +KHLGE+ +RYCFFKKDE L++A+ IL+ W+
Sbjct: 372 RFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKGS 428
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 142 bits (361), Expect = 3e-42
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRP-MLRLDTESDKYED 66
YF + ++ R+ + +L G+ P+IP G YF++ D + + M L D+ D
Sbjct: 304 SYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYD 363
Query: 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNK 124
+F KWM KN L IP S FYS H+ ++ IR+CF K + TL+ L+ W+ +
Sbjct: 364 RRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWKVE 421
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 141 bits (358), Expect = 6e-42
Identities = 52/114 (45%), Positives = 71/114 (62%), Gaps = 1/114 (0%)
Query: 8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDF 67
CYF ++ +EL KR+ + L+ G+ P++PDGGYF++AD + L L D SD+ D+
Sbjct: 297 CYFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGADLS-DMNSDEPYDY 355
Query: 68 KFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW 121
KF KWMTK+ KL IP SAF + K E L+R+CF KKD TL A I + W
Sbjct: 356 KFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRAW 409
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 141 bits (358), Expect = 1e-41
Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 1 MTTAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRP---MLRL 57
+ A YF + +E K +I D+ G+ P+G YF++ D+++++
Sbjct: 320 INDALKIGYFEKMRQEYINKFKIFTSIFDELGLPYTAPEGTYFVLVDFSKVKIPEDYPYP 379
Query: 58 DTESDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSI 117
+ +K +DF+ + W+ + + IPP+ FY EH+ ENL+R+ K D L A
Sbjct: 380 EEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAYLENAVER 439
Query: 118 LQTWRNK 124
L+ ++
Sbjct: 440 LKLLKDY 446
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 115 bits (290), Expect = 5e-32
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 16/123 (13%)
Query: 8 CYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDF 67
+ + LR +R+ LA L + G G YF+ AD L +
Sbjct: 283 AWVAALRNSLRARRDRLAAGLTEIGFAVHDSYGTYFLCADPRPLGYD----------DST 332
Query: 68 KFAKWMTKNVKLQGIPPSAFYSD------EHKHLGENLIRYCFFKKDETLREASSILQTW 121
+F + + V + IP SAF + + +L+R+ F K+D+TL EA L
Sbjct: 333 EFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLSVL 392
Query: 122 RNK 124
+
Sbjct: 393 AER 395
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 114 bits (288), Expect = 8e-32
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 20/124 (16%)
Query: 1 MTTAPDKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTE 60
+ A + ++ + E R +R++LA L G+ +P+G YF++A+
Sbjct: 267 LKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGW--------- 317
Query: 61 SDKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQT 120
A + + ++ IP SAFY ++ ++L R+ F K +E L A L
Sbjct: 318 --------DAFRLVEEARVALIPASAFYLEDP---PKDLFRFAFCKTEEELHLALERLGR 366
Query: 121 WRNK 124
N
Sbjct: 367 VVNS 370
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP;
2.35A {Escherichia coli} SCOP: c.67.1.1
Length = 386
Score = 112 bits (282), Expect = 5e-31
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 6 DKCYFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYE 65
+ ++ + + R KR+IL +AL+++ + + +G YF++ D++ + + +
Sbjct: 284 EPEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAVSTL----------D 333
Query: 66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQ 119
D +F +W+T+ + IP S F +D LIR CF KK+ TL A+ L+
Sbjct: 334 DVEFCQWLTQEHGVAAIPLSVFCADPF---PHKLIRLCFAKKESTLLAAAERLR 384
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 43.1 bits (102), Expect = 5e-06
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 12/101 (11%)
Query: 15 EELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMT 74
L + + + L+ G+ + + G F W LRP+LR T + + +
Sbjct: 327 MRLGKRHKHFTNGLEVVGIKCLKNNAGLFC---WMDLRPLLRESTFDS---EMSLWRVII 380
Query: 75 KNVKLQGIPPSAFYSDEHKHLGENLIRYCF-FKKDETLREA 114
+VKL P S+F E R CF D T+ A
Sbjct: 381 NDVKLNVSPGSSFECQE-----PGWFRVCFANMDDGTVDIA 416
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening,
ethylene biosynthesis, lyase, pyridoxal 5'-P binding;
HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A*
1m7y_A* 1ynu_A* 1b8g_A*
Length = 435
Score = 41.2 bits (97), Expect = 2e-05
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 9 YFYTISEELRPKREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFK 68
Y + L+ +++ L L K+G+ + + G F W +R +LR +T + +
Sbjct: 326 YIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFC---WVDMRHLLRSNTFEA---EME 379
Query: 69 FAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF-FKKDETLREA 114
K + V L P S+ + E R CF + TL A
Sbjct: 380 LWKKIVYEVHLNISPGSSCHCTE-----PGWFRVCFANLPERTLDLA 421
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like
fold structural genomics, joint center for structural
genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium
glutamicum}
Length = 427
Score = 39.3 bits (92), Expect = 1e-04
Identities = 19/113 (16%), Positives = 30/113 (26%), Gaps = 21/113 (18%)
Query: 12 TISEELRPKREILADALDK--AGMVPV---IPDGGYFMVADWTQLRPMLRLDTESDKYED 66
+ L PK + + LD A +P GGYF+ +
Sbjct: 316 KHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFI---SLDVV-------PGTASRV 365
Query: 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF-FKKDETLREASSIL 118
+ AK + L + Y +R E L A +
Sbjct: 366 AELAK--EAGIAL--TGAGSSYPLRQD-PENKNLRLAPSLPPVEELEVAMDGV 413
>1vp4_A Aminotransferase, putative; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 425
Score = 38.8 bits (91), Expect = 2e-04
Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 22/113 (19%)
Query: 12 TISEELRPKREILADALDK-----AGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
E R KR ++ +AL++ G+ V +GG F+ W L L D +E
Sbjct: 315 PTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFI---W------LTLPEGFDTWEM 365
Query: 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF-FKKDETLREASSIL 118
F++A K V +P F + +R F DE + E L
Sbjct: 366 FEYA--KRKKVFY--VPGRVFKVYDE---PSPSMRLSFCLPPDEKIVEGIKRL 411
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple
complex, schiff-base linkage, kynuren aminotransferase;
HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A*
3ath_A* 3av7_A* 1x0m_A 1wst_A*
Length = 448
Score = 38.8 bits (91), Expect = 2e-04
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 20/111 (18%)
Query: 12 TISEELRPKREILADALDK---AGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFK 68
I + +P+R+ + +AL++ G+ P+GG F+ W + L D + +
Sbjct: 344 EIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFI---W------VTLPDGIDSKKMLE 394
Query: 69 FAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF-FKKDETLREASSIL 118
A + K V +P AFY+ +N +R F + ++ + E L
Sbjct: 395 RA--IKKGVAY--VPGEAFYAHRD---VKNTMRLNFTYVDEDKIMEGIKRL 438
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe
structural genomics, PSI-2, protein structure
initiative; 2.00A {Corynebacterium diphtheriae}
Length = 422
Score = 38.5 bits (90), Expect = 2e-04
Identities = 19/113 (16%), Positives = 30/113 (26%), Gaps = 21/113 (18%)
Query: 12 TISEELRPKREILADALDK-----AGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
+ L PK E + + LD P GGYF+ + + +
Sbjct: 314 KHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFI---S------VDVVPGTAS-RV 363
Query: 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF-FKKDETLREASSIL 118
+ AK + L + + H IR L A
Sbjct: 364 VELAK--EAGIAL--TGAGSSFPL-HNDPNNENIRLAPSLPPVAELEVAMDGF 411
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate
aminotransferase; HET: PGU; 1.67A {Thermus thermophilus}
PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Length = 397
Score = 37.9 bits (89), Expect = 3e-04
Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 20/111 (18%)
Query: 12 TISEELRPKREILADALDK---AGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFK 68
+ R K + + ALD+ + P GG F+ W + L F+
Sbjct: 292 RVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFV---W------MELPKGLSAEGLFR 342
Query: 69 FAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF-FKKDETLREASSIL 118
A + +NV +P F+++ GEN +R + E + E L
Sbjct: 343 RA--LEENVAF--VPGGPFFANGG---GENTLRLSYATLDREGIAEGVRRL 386
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint
center for structural genomics, JCSG; 2.60A {Deinococcus
geothermalis dsm 11300}
Length = 423
Score = 37.7 bits (88), Expect = 4e-04
Identities = 18/114 (15%), Positives = 29/114 (25%), Gaps = 22/114 (19%)
Query: 12 TISEELRPKREILADALDKA---GMVPV---IPDGGYFMVADWTQLRPMLRLDTESDKYE 65
+ + PK + + L G +P GGYF+ +
Sbjct: 310 DHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFI---SLDTAE--PVADR----- 359
Query: 66 DFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF-FKKDETLREASSIL 118
V L P A Y +R E +R A ++
Sbjct: 360 --VVKLAEAAGVSL--TPAGATYPAGQD-PHNRNLRLAPTRPPVEEVRTAMQVV 408
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate
aminotransferase, archaea, thermococcus L transferase;
HET: PMP; 2.30A {Thermococcus litoralis}
Length = 407
Score = 36.8 bits (86), Expect = 8e-04
Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 24/113 (21%)
Query: 12 TISEELRPKREILADALDK--AGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKF 69
+ KR+I+ AL+ P G F+ L D
Sbjct: 303 GALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFV---MFFLPE--GADGI--------- 348
Query: 70 AKWMTKNVKLQGI---PPSAFYSDEHKHLGENLIRYCF-FKKDETLREASSIL 118
+ + ++ +G+ P FY+DE G+N IR F E + L
Sbjct: 349 -SFANELMEREGVVVVPGKPFYTDES---GKNAIRLNFSRPSKEEIPIGIKKL 397
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha
& beta protein, PLP-dependent transferase, aminotransf
mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB:
2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Length = 425
Score = 36.1 bits (84), Expect = 0.001
Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 18/111 (16%)
Query: 12 TISEELRPKREILADALDK---AGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFK 68
+ + +++ + A DK +P G F+ W +++ D ++
Sbjct: 321 RVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFL---WIKVKG--INDV-----KELI 370
Query: 69 FAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCF-FKKDETLREASSIL 118
K + V + +P +AFY D +R F E + A +L
Sbjct: 371 EEKAVKMGVLM--LPGNAFYVDSSAP--SPYLRASFSSASPEQMDVAFQVL 417
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Length = 444
Score = 36.2 bits (84), Expect = 0.001
Identities = 15/115 (13%), Positives = 33/115 (28%), Gaps = 21/115 (18%)
Query: 12 TISEELRPKREILADALDK----AGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDF 67
I + + + L + ++ P+G F+ W L + T
Sbjct: 332 EIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFL---WLWF-KDLPISTL------- 380
Query: 68 KFAKW-MTKNVKLQGIPPSAFYSDEHKHL---GENLIRYCFFKKDETLREASSIL 118
+ K + +P F+ IR ++TL + ++
Sbjct: 381 DLYERLKAKGTLI--VPSEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVI 433
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI
structure initiative, joint center for structural
genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 409
Score = 35.6 bits (83), Expect = 0.002
Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 21/117 (17%)
Query: 9 YFYTISEELRPKREILADALDKAGMVPVI-PDGGYFMVADWTQLRPMLRLDTESDKYEDF 67
+F + E R + E + L++ G+ P G +++ A+ L ++
Sbjct: 295 FFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAE-------LPVED------AE 341
Query: 68 KFAKWMTKNVKLQG-----IPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQ 119
+FA+WM + + G P FY LG+ IR + + L A +L
Sbjct: 342 EFARWMLTDFNMDGETTMVAPLRGFYLTPG--LGKKEIRIACVLEKDLLSRAIDVLM 396
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.002
Identities = 21/117 (17%), Positives = 35/117 (29%), Gaps = 37/117 (31%)
Query: 7 KCYFYTISEELRPKREILADALDKA---GMVPVIPD-GG------YF------------M 44
K Y RP + AL +A G ++ GG YF +
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 45 VADWTQ-----LRPMLRLDTESDKY--EDFKFAKWMTKNVKLQGIPP-----SAFYS 89
V D + L ++R +++K + +W+ P S S
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN---TPDKDYLLSIPIS 237
Score = 26.2 bits (57), Expect = 3.7
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 20/76 (26%)
Query: 62 DKYEDFKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLRE-------- 113
+ Y F + +K + I F K + E+ Y F + L
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKI----F-----KEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 114 --AS-SILQTWRNKNI 126
+ + ++K +
Sbjct: 1737 TLMEKAAFEDLKSKGL 1752
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Salmonella
typhimurium}
Length = 417
Score = 32.2 bits (74), Expect = 0.025
Identities = 16/115 (13%), Positives = 35/115 (30%), Gaps = 24/115 (20%)
Query: 13 ISEELRPKREILADALDKA----GMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFK 68
I + + + + + P+G F+ W L + TE
Sbjct: 307 IKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFL---WLWF-KDLPITTE-------- 354
Query: 69 FAKWMTKNVKLQG---IPPSAFYSDEHKHL--GENLIRYCFFKKDETLREASSIL 118
+ + +K +G +P F+ K +R + + + + IL
Sbjct: 355 ---LLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKIL 406
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent
aminotransferase; 2.05A {Chlamydia trachomatis} PDB:
3asb_A*
Length = 400
Score = 31.0 bits (71), Expect = 0.073
Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 16/94 (17%)
Query: 21 REILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQ 80
++L AL G + ++ W + D + + +
Sbjct: 305 SDLLRKALLATGFEVFGGEHAPYL---WVKPTQ--------ANISDRDLFDFFLREYHIA 353
Query: 81 GIPPSAFYSDEHKHLGENLIRYCFFKKDETLREA 114
P F G +R+ K E + A
Sbjct: 354 ITPGIGFGRS-----GSGFVRFSSLGKREDILAA 382
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC
BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
2hor_A* 1lk9_A*
Length = 427
Score = 30.3 bits (68), Expect = 0.13
Identities = 13/108 (12%), Positives = 30/108 (27%), Gaps = 9/108 (8%)
Query: 9 YFYTISEELRPKREILADALDKAG--MVPVIPDGGYFMVADWTQLRPMLRLDTESDKYED 66
++LR + + LD++ +P Y P ++E+
Sbjct: 314 LNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRM-RPPSPSYAWVKCEWEE 372
Query: 67 FKFAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREA 114
K +N ++ F + +R K + +
Sbjct: 373 DKDCYQTFQNGRINTQNGVGFEA------SSRYVRLSLIKTQDDFDQL 414
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
{Staphylococcus aureus}
Length = 404
Score = 28.7 bits (65), Expect = 0.51
Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 17/94 (18%)
Query: 21 REILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQ 80
R+ L KA + V GG ++ W + Y+ +F +++ + +
Sbjct: 316 RDRFEAMLAKADLPFVHAKGGIYV---WLET---------PPGYDSEQFEQFLVQEKSIL 363
Query: 81 GIPPSAFYSDEHKHLGENLIRYCFFKKDETLREA 114
P F + G +R D+ L EA
Sbjct: 364 VAPGKPFGEN-----GNRYVRISLALDDQKLDEA 392
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 28.6 bits (64), Expect = 0.57
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 5/78 (6%)
Query: 51 LRPMLRLDTESDKYEDFK--FAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRY-CFFKK 107
M+ SD E+ K ++ + Q S + L L++ C
Sbjct: 706 FYHMMDRRNISDISENLKRYLLQYFKPVIDRQSWSDKG--SVWDRMLRSALLKLACDLNH 763
Query: 108 DETLREASSILQTWRNKN 125
+++A+ + W +
Sbjct: 764 APCIQKAAELFSQWMESS 781
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.72
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 12/58 (20%)
Query: 69 FAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTWRNKNI 126
K++ + + Q +P L N R E++R+ + W++ N
Sbjct: 307 LLKYL--DCRPQDLPREV--------LTTNPRRLSIIA--ESIRDGLATWDNWKHVNC 352
>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine,
structural genomics, protein structure initiative; HET:
GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4
c.1.9.9
Length = 475
Score = 27.3 bits (61), Expect = 1.5
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 6/32 (18%)
Query: 2 TTAPDKCYFYTISEELRPKREILADALDKAGM 33
TT F + S E L + + M
Sbjct: 133 TTC---QAFTSSSPV---ATEELFEEASRRNM 158
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature
dependence O substrate recognition; HET: PLP; 1.80A
{Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A*
1dju_A*
Length = 389
Score = 27.1 bits (61), Expect = 1.7
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 18/101 (17%)
Query: 15 EELRPKREILADALDKAGMVPVIPDGG-YFMVADWTQLRPMLRLDTESDKYEDFKFAKWM 73
+E +R+++ L++ G+ V P G Y KF++ M
Sbjct: 292 KEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFP------------RIRDTGLTSKKFSELM 339
Query: 74 TKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREA 114
K ++ +P SAF GE +R + E L EA
Sbjct: 340 LKEARVAVVPGSAFGKA-----GEGYVRISYATAYEKLEEA 375
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A
{Homo sapiens}
Length = 419
Score = 27.1 bits (60), Expect = 1.8
Identities = 10/78 (12%), Positives = 24/78 (30%), Gaps = 5/78 (6%)
Query: 51 LRPMLRLDTESDKYEDFK--FAKWMTKNVKLQGIPPSAFYSDEHKHLGENLIRY-CFFKK 107
+ ++ ++ FK + + + Q S + L L+ C
Sbjct: 155 MYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEG--SVSERMLRSQLLLLACVHNY 212
Query: 108 DETLREASSILQTWRNKN 125
++ A + W+ N
Sbjct: 213 QPCVQRAEGYFRKWKESN 230
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics,
pyrococcus horikoshii OT3, riken structural
genomics/PROT initiative, RSGI; HET: XMP; 2.10A
{Pyrococcus horikoshii} SCOP: c.1.5.1
Length = 486
Score = 26.7 bits (60), Expect = 2.2
Identities = 8/17 (47%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 25 ADALDKAGMVPVIPDGG 41
AD + G + VI DGG
Sbjct: 321 ADRAQEYG-LYVIADGG 336
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains,
oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes}
SCOP: c.1.5.1 d.37.1.1
Length = 491
Score = 26.7 bits (60), Expect = 2.3
Identities = 6/17 (35%), Positives = 8/17 (47%), Gaps = 1/17 (5%)
Query: 25 ADALDKAGMVPVIPDGG 41
A + G +I DGG
Sbjct: 329 AAVAREYG-KTIIADGG 344
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid, TIM
barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus
anthracis} PDB: 3tsd_A* 3tsb_A*
Length = 511
Score = 26.7 bits (60), Expect = 2.5
Identities = 9/17 (52%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 25 ADALDKAGMVPVIPDGG 41
A K G +PVI DGG
Sbjct: 352 ATEARKHG-IPVIADGG 367
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5'
phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A
{Chlamydomonas reinhardtii}
Length = 449
Score = 26.5 bits (59), Expect = 2.5
Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 18/94 (19%)
Query: 21 REILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQ 80
+IL + G D ++ W ++ + + +
Sbjct: 354 AQILKTTFTEMGFSVYGGDDAPYI---WVGF-------PGKPSWD---VFAEILERCNIV 400
Query: 81 GIPPSAFYSDEHKHLGENLIRYCFFKKDETLREA 114
P S + GE +R F E + EA
Sbjct: 401 TTPGSGYGPA-----GEGFVRASAFGSRENILEA 429
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.18A {Thermotoga maritima} SCOP:
c.1.5.1
Length = 494
Score = 26.7 bits (60), Expect = 2.5
Identities = 7/17 (41%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 25 ADALDKAGMVPVIPDGG 41
++ K VP+I DGG
Sbjct: 333 SEVARKYD-VPIIADGG 348
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 26.7 bits (59), Expect = 2.5
Identities = 6/71 (8%), Positives = 17/71 (23%)
Query: 20 KREILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKL 79
+ + P + + ++ +D ED + + +
Sbjct: 186 GLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRP 245
Query: 80 QGIPPSAFYSD 90
I + D
Sbjct: 246 TAITWLGYLPD 256
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio
cholerae o1 biovar el tor}
Length = 496
Score = 26.3 bits (59), Expect = 3.0
Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 25 ADALDKAGMVPVIPDGG 41
A ++ G +PVI DGG
Sbjct: 327 AGVANEYG-IPVIADGG 342
>4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A
{Homo sapiens} PDB: 2uz9_A* 3e0l_A
Length = 476
Score = 26.2 bits (58), Expect = 3.8
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 2 TTAPDKCYFYTISEELRPKREILADALDKAGM 33
TTA CYF TI + +LAD DK G
Sbjct: 159 TTA---CYFATIHTD---SSLLLADITDKFGQ 184
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold,
oxidoreductase; 3.19A {Cryptosporidium parvum}
Length = 400
Score = 26.0 bits (58), Expect = 4.2
Identities = 7/17 (41%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 25 ADALDKAGMVPVIPDGG 41
+ K G +P+I DGG
Sbjct: 239 SSVASKFG-IPIIADGG 254
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural
genomics, PSI-2, protein structure initiative; HET: MSE;
1.90A {Silicibacter pomeroyi dss-3}
Length = 391
Score = 25.9 bits (58), Expect = 4.3
Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 16/108 (14%)
Query: 15 EELRPKREILADALDKAGMV-PVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWM 73
+ + R+++ + L KAG PDG +++ AD + L T+ FA +
Sbjct: 286 DVYKANRKLMLERLPKAGFTRIAPPDGAFYVYADVSDL-------TDD----SRAFAAEI 334
Query: 74 TKNVKLQGIPPSAFYSDEHKHLGENLIRYCFFKKDETLREASSILQTW 121
+ + P F + G +R+ + + + E L+ +
Sbjct: 335 LEKAGVAVTPGLDFDPER----GAGTLRFSYARATADIEEGLDRLEAF 378
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM
barrel, IMPDH, IMP dehydrogenase, LOO purine
biosynthesis, oxidoreductase; 2.40A {Borrelia
burgdorferi} SCOP: c.1.5.1
Length = 404
Score = 26.0 bits (58), Expect = 4.3
Identities = 5/17 (29%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 25 ADALDKAGMVPVIPDGG 41
+A + + +I DGG
Sbjct: 249 YEACNNTN-ICIIADGG 264
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine
nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A
{Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A*
1nf7_A* 1b3o_A* 1nfb_A*
Length = 514
Score = 26.0 bits (58), Expect = 4.3
Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 25 ADALDKAGMVPVIPDGG 41
A+ + G VP+I DGG
Sbjct: 351 AEYARRFG-VPIIADGG 366
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent
aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus
aureus}
Length = 430
Score = 25.8 bits (57), Expect = 4.6
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 21 REILADALDKAGMVPVIPDGGYFM 44
+E++ + + GYFM
Sbjct: 348 KEVVYADQYHSHWQAYDFNSGYFM 371
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal
5' phosphat external aldimine, chloroplast, pyridox
phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB:
3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A
3eia_A*
Length = 432
Score = 25.7 bits (57), Expect = 5.2
Identities = 14/94 (14%), Positives = 24/94 (25%), Gaps = 18/94 (19%)
Query: 21 REILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQ 80
I+ D G ++ W ++ + + +
Sbjct: 342 TNIIIDTFTSLGYDVYGGKNAPYV---WVHF-------PNQSSWD---VFAEILEKTHVV 388
Query: 81 GIPPSAFYSDEHKHLGENLIRYCFFKKDETLREA 114
P S F GE +R F E + EA
Sbjct: 389 TTPGSGFGPG-----GEGFVRVSAFGHRENILEA 417
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
aeruginosa}
Length = 412
Score = 25.2 bits (56), Expect = 6.6
Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 21 REILADALDKAGMVPVIPDGGYFMVADWTQLRPMLRLDTESDKYEDFKFAKWMTKNVKLQ 80
R++L L +AG + P ++ W ++ +FAK + ++ K+
Sbjct: 308 RDVLVKGLREAGWMVENPKASMYV---WAKIPEPYAHLG------SLEFAKKLLQDAKVS 358
Query: 81 GIPPSAFYSDEHKHLGENLIRYCFFKKDETLREA 114
P F G++ +R+ + + LR+A
Sbjct: 359 VSPGIGFGDY-----GDDHVRFALIENRDRLRQA 387
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio
cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A
Length = 366
Score = 25.3 bits (56), Expect = 7.1
Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 25 ADALDKAGMVPVIPDGG 41
A ++ G +PVI DGG
Sbjct: 204 AGVANEYG-IPVIADGG 219
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex,
oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium
parvum}
Length = 361
Score = 25.3 bits (56), Expect = 7.3
Identities = 7/17 (41%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 25 ADALDKAGMVPVIPDGG 41
+ K G +P+I DGG
Sbjct: 200 SSVASKFG-IPIIADGG 215
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.425
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,041,785
Number of extensions: 112991
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 51
Length of query: 126
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 44
Effective length of database: 4,412,271
Effective search space: 194139924
Effective search space used: 194139924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.2 bits)