RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7882
(329 letters)
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 86.5 bits (215), Expect = 7e-19
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 102 VVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHG 161
+G +L L +L+E+ ++GDVRG GLMIGV+LV+D++TK P ++ I+ E G
Sbjct: 348 ELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEP-DAELAAKIVARAFERG 406
Query: 162 LLLGRGGLSGNTL 174
LLL G GN L
Sbjct: 407 LLLLTCGPHGNVL 419
>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated.
Length = 451
Score = 81.2 bits (201), Expect = 5e-17
Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGL 162
+G LL L + E +VGD+RGKGL++G++LV DKETK P ++ + ++ +CKE GL
Sbjct: 348 LGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGL 407
Query: 163 LLGRGGLS---GNTLTALQPKL 181
++G+ G + N + L P L
Sbjct: 408 IIGKNGDTVAGYNNVLTLSPPL 429
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase,
alanine-glyoxylate aminotransferase, dialkylglycine
decarboxylase, 4-aminobutyrate aminotransferase,
beta-alanine-pyruvate aminotransferase,
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, and glutamate-1-semialdehyde
2,1-aminomutase. All the enzymes belonging to this
family act on basic amino acids and their derivatives
are involved in transamination or decarboxylation.
Length = 413
Score = 74.9 bits (185), Expect = 5e-15
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 102 VVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHG 161
+G +L L +L E+ +VGDVRG+GLMIG++LV+D+ TK P + I+ + E G
Sbjct: 320 ELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATK-PPDKELAAKIIKAALERG 378
Query: 162 LLLGRGGLSGNTL 174
LLL G GN +
Sbjct: 379 LLLRPSG--GNVI 389
>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase [Coenzyme metabolism].
Length = 449
Score = 69.9 bits (172), Expect = 3e-13
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGL 162
+G +L L + +VGDVRG GL+ ++LV DK TK P +R + + E GL
Sbjct: 349 IGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGL 408
Query: 163 LL 164
L+
Sbjct: 409 LI 410
>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional.
Length = 447
Score = 67.1 bits (164), Expect = 2e-12
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 10/90 (11%)
Query: 77 LKISDTVRPHVQIKKSVLERFVHTYVVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLV 136
L + + + H +K+ + G +L+ L K++++ I+GDVRGKGL+IGV+ V
Sbjct: 315 LAVLEYMEKHNLPEKAAEK--------GEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFV 366
Query: 137 QDKETKVPLNSRH-MTH-ILDSCKEHGLLL 164
DK+TK P + + ++ ++GLLL
Sbjct: 367 ADKKTKQPFSKSQAVASELISVAAKNGLLL 396
>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional.
Length = 449
Score = 67.0 bits (164), Expect = 3e-12
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLN--SRHMTHILDSCKEH 160
G +LL L L+E F +VGDVRGKGLM+ +DLV DK T+ P++ + + D +E+
Sbjct: 349 RGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVAREN 408
Query: 161 GLLLGRGG 168
G+L+ G
Sbjct: 409 GVLVRPSG 416
>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional.
Length = 1013
Score = 67.4 bits (165), Expect = 3e-12
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 9/77 (11%)
Query: 102 VVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHIL----DSC 157
+GN+LL L +L++ F I+GDVRG GL +G++LV D++TK P T I +
Sbjct: 913 EIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIELVTDRKTKAP-----ATAIARYVKNGA 967
Query: 158 KEHGLLLGRGGLSGNTL 174
+E G+L+G G N L
Sbjct: 968 RERGILIGTEGPHDNVL 984
>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 66.3 bits (162), Expect = 4e-12
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGL 162
+GN+ L +++++ ++GDVRG GLMIGVDLV+D+ETK ++ E GL
Sbjct: 332 LGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETK-ERAYEEAAKVVWRAWELGL 390
Query: 163 LLGRGGLSGNTLTALQPKL 181
++ SGN L +QP L
Sbjct: 391 IVTF--FSGNVLR-IQPPL 406
>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 459
Score = 65.5 bits (160), Expect = 7e-12
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 104 GNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETK-----VPLNSRHMTHILDSCK 158
G +L L++L++ + +G+VRG+GLMIG+++V +++ P + I +C
Sbjct: 353 GEWLKAQLAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACF 412
Query: 159 EHGLLLGRGGLSGNTLTALQPKLLN 183
E+GLLL RGG +GN + L P L+
Sbjct: 413 ENGLLLERGGRNGNVVRLLPPLLIT 437
>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional.
Length = 441
Score = 59.9 bits (146), Expect = 5e-10
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 89 IKKSVLERFVHTYVVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSR 148
+++ +LE + +G +L L +L+E++ +GDVRG GLMIGV+LV+D++ + +
Sbjct: 336 LEEGLLE---NAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEP---DPK 389
Query: 149 HMTHILDSCKEHGLLL 164
+L + GLLL
Sbjct: 390 LRDKVLYEAFKRGLLL 405
>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 464
Score = 60.0 bits (146), Expect = 5e-10
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 99 HTYVVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLV-----QDKETKVPLNSRHMTHI 153
H +G L HL +L+ ++ +GDVRG+GLM+GV++V D P N + I
Sbjct: 354 HAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLI 413
Query: 154 LDSCKEHGLLLGRGGLSGNTLTALQP 179
C GL+L GG G+ + L P
Sbjct: 414 QRECLRRGLILELGGRHGSVVRFLPP 439
>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional.
Length = 433
Score = 59.7 bits (145), Expect = 5e-10
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 102 VVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHG 161
+G + L L L+E+ ++GDVRG GLMIG+++V + + ILD C E G
Sbjct: 334 EMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEP---DGDAVEKILDKCLEKG 390
Query: 162 LLLGRGGLSGNTLTALQP 179
LL G +GN L + P
Sbjct: 391 LLFYLCGNAGNVLRMIPP 408
>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional.
Length = 457
Score = 58.0 bits (140), Expect = 2e-09
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 70 LKTPAHKLKISDTVRPHVQI--KKSVLERFVHTYVVGNFLLTHLSKLREEFAIVGDVRGK 127
L TPA IS ++I ++++L+ + VG F+ L +++E F ++GDVRGK
Sbjct: 317 LLTPAANPVISAAAEATLEIIEEENLLKNALK---VGEFIKKRLLEMKESFEVIGDVRGK 373
Query: 128 GLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGLLLGRGGLSGNTLTALQPKLL 182
GLMIGV++V KE P + I E GL+L G+ GN + P ++
Sbjct: 374 GLMIGVEIV--KENGKP-DPELTGKICWRAFELGLILPSYGMFGNVIRITPPLVI 425
>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional.
Length = 459
Score = 55.9 bits (135), Expect = 1e-08
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 104 GNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGLL 163
F+ L +++ ++ ++GDVRG GL+ GV+LV D+ TK +L C +GL
Sbjct: 358 SQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKER-AYDEAEAVLYRCLNNGLS 416
Query: 164 LGRGGLSGNTLTALQPKLL 182
GN + L P L+
Sbjct: 417 FKVSQ--GNVIQ-LSPPLI 432
>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional.
Length = 443
Score = 55.3 bits (134), Expect = 2e-08
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 112 SKLREEFA---IVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTH--ILDSCKEHGLL 163
++LRE VGD+RG+GL +GV+LV D+ TK P + H I GL+
Sbjct: 339 ARLRERLGQHPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLM 395
>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional.
Length = 451
Score = 54.6 bits (132), Expect = 2e-08
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 111 LSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRH-----MTHILDSCKEHGLL 163
L +L E VG+VRG G+ ++LV D+ET+ PL M + +CKE GLL
Sbjct: 354 LRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLL 411
>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases. This family
consists of L-diaminobutyric acid transaminases. This
general designation covers both 2.6.1.76
(diaminobutyrate-2-oxoglutarate transaminase, which uses
glutamate as the amino donor in DABA biosynthesis), and
2.6.1.46 (diaminobutyrate--pyruvate transaminase, which
uses alanine as the amino donor). Most members with
known function are 2.6.1.76, and at least some
annotations as 2.6.1.46 in current databases at time of
model revision are incorrect. A distinct branch of this
family contains examples of 2.6.1.76 nearly all of which
are involved in ectoine biosynthesis. A related enzyme
is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also
called GABA transaminase. These enzymes all are
pyridoxal phosphate-containing class III
aminotransferase [Central intermediary metabolism,
Other].
Length = 442
Score = 54.2 bits (130), Expect = 3e-08
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 104 GNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETK-----VPLNSRHMTHILDSCK 158
G + + L + +E +G+VRG+GLM G+ +V ++++K P + I +C
Sbjct: 334 GERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACF 393
Query: 159 EHGLLLGRGGLSGNTLTALQPKLLN 183
E+GLLL GG G L P ++
Sbjct: 394 ENGLLLETGGREGEVFRLLCPITID 418
>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed.
Length = 451
Score = 54.0 bits (130), Expect = 4e-08
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGL 162
+G ++ +++ ++ +GDVRG G M +LVQD++TK P + +I + GL
Sbjct: 347 LGKVVMNRFEEMKNKYNCIGDVRGLGAMCAFELVQDRKTKEP-DKTLTANICKEANKRGL 405
Query: 163 LLGRGGLSGNTLTALQP 179
LL G GN + L P
Sbjct: 406 LLLSAGTYGNVIRVLMP 422
>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 53.9 bits (130), Expect = 4e-08
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGL 162
+ + L L E +GDVRG+G MI ++LV+ T P ++ + + G+
Sbjct: 347 IEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPG-TTEP-DAELTKALAAAAHAAGV 404
Query: 163 LLGRGGLSGNTLTALQP 179
++ G GN + L P
Sbjct: 405 IVLTCGTYGNVIRLLPP 421
>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional.
Length = 445
Score = 53.6 bits (129), Expect = 6e-08
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 104 GNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGLL 163
G + + ++ VGDVRG GL IG+D+V DK+ K ++ I + C EHG++
Sbjct: 336 GEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTR-DNEAALKICNYCFEHGVV 394
Query: 164 LGRGGLSGNTLTALQPKL 181
+ ++GN L QP L
Sbjct: 395 I--IAVAGNVLR-FQPPL 409
>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional.
Length = 466
Score = 52.4 bits (126), Expect = 1e-07
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 99 HTYVVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETK--VPLNSRHMTHILDS 156
H VG + L+ LRE +VGDVRG LM V+ V DK +K +P + I
Sbjct: 353 HVREVGPYFEERLASLRE-LPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRH 411
Query: 157 CKEHGLL 163
C+E GLL
Sbjct: 412 CQERGLL 418
>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino
acid transport and metabolism].
Length = 404
Score = 49.9 bits (120), Expect = 9e-07
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 9/62 (14%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGL 162
G +LL L +L+ + +V +VRG+GLMIG++L + + I+ + +E G+
Sbjct: 312 KGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPYRAR---------DIVRALREEGV 362
Query: 163 LL 164
L+
Sbjct: 363 LV 364
>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated.
Length = 425
Score = 49.4 bits (118), Expect = 1e-06
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGL 162
+G L L + E+ +GDVRG G MI ++L +D + P N++ I+ ++ GL
Sbjct: 327 LGEKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHSKP-NAKLTAQIVARARDKGL 385
Query: 163 LLGRGGLSGNTLTALQP 179
+L G N L L P
Sbjct: 386 ILLSCGPYYNVLRILVP 402
>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.
Length = 396
Score = 48.6 bits (117), Expect = 2e-06
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 99 HTYVVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCK 158
+ VG +L L +L E++ + +VRG GLMIG++L P I+
Sbjct: 306 NAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIEL------DRPAAE-----IVKKAL 354
Query: 159 EHGLLL 164
E GLL+
Sbjct: 355 EKGLLI 360
>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 460
Score = 46.3 bits (110), Expect = 1e-05
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 106 FLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVP 144
++ T L L VGD+R GLM+G++LV++KETK P
Sbjct: 363 YVATQLEDLFA-LKHVGDIRQLGLMVGIELVKNKETKEP 400
>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional.
Length = 460
Score = 45.4 bits (108), Expect = 3e-05
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 99 HTYVVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPL 145
+ G L L L + +VG+VRG GL+ V+LV DK TK P
Sbjct: 350 NAAERGARLQARLRALADH-PLVGEVRGVGLIAAVELVADKATKTPF 395
>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional.
Length = 972
Score = 45.0 bits (107), Expect = 4e-05
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 102 VVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVP 144
VG+ L L L + ++G V G GL +GV+LV+D++T P
Sbjct: 873 RVGDHLKARLEALADRHPLIGAVHGMGLYLGVELVRDRQTLEP 915
>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional.
Length = 408
Score = 43.8 bits (103), Expect = 7e-05
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 111 LSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGLLLGRGG 168
L L EF + VRG+GLM+G L P ++ ILD EHGLLL + G
Sbjct: 323 LEALNAEFGVFAQVRGRGLMLGAVL-------APAHAGQAGAILDLAAEHGLLLLQAG 373
>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional.
Length = 443
Score = 43.4 bits (103), Expect = 9e-05
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 102 VVGNFLLTHLSKLREEF-AIVGDVRGKGLMIGVDL 135
G +LL L +L EF A+V +VRG+GLM DL
Sbjct: 353 RQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFDL 387
>gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional.
Length = 459
Score = 41.6 bits (98), Expect = 4e-04
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 107 LLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTH--ILDSCKEHGL 162
L LR +VGDVRG+GL+ ++LV DK TK P ++ I D +GL
Sbjct: 355 FAAGLDALRAH-PLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGL 411
>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional.
Length = 461
Score = 41.5 bits (98), Expect = 4e-04
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNS 147
VG + L + +VG+VRG G++ V+ V D++ + P +
Sbjct: 356 VGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDP 400
>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase,
prokaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known bacterial examples of the enzyme.
The best archaeal matches are presumed but not trusted
to have the equivalent function. The degree of sequence
difference between this set and known eukaryotic
(mitochondrial) examples is greater than the distance to
some proteins known to have different functions, and so
separate models are built for prokaryotic and eukaryotic
sets. E. coli has two isozymes. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 420
Score = 41.4 bits (97), Expect = 4e-04
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGL 162
+G + L+ L+ +GDVRG G MI V+LV D T P ++ I + GL
Sbjct: 325 IGRLVTDRLTTLKAVDPRIGDVRGLGAMIAVELV-DPGTTEP-DAGLAERIATAAHAAGL 382
Query: 163 LLGRGGLSGNTLTALQP 179
LL G+ GN + L P
Sbjct: 383 LLLTCGMFGNIIRFLPP 399
>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional.
Length = 460
Score = 40.0 bits (94), Expect = 0.001
Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 111 LSKLREEFAIVGDVRGKGLMIGVDLVQDKETK 142
L KL + IVGDVRG G G++LV+DK TK
Sbjct: 362 LEKLLD-LPIVGDVRGDGYFYGIELVKDKATK 392
>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase. Characterized members
of this protein family are L-lysine 6-transaminase, also
called lysine epsilon-aminotransferase (LAT). The
immediate product of the reaction of this enzyme on
lysine, 2-aminoadipate 6-semialdehyde, becomes
1-piperideine 6-carboxylate, or P6C. This product may be
converted subsequently to pipecolate or
alpha-aminoadipate, lysine catabolites that may be
precursors of certain seconary metabolites.
Length = 431
Score = 39.8 bits (93), Expect = 0.001
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 93 VLER---FVHTYVVGNFLLTHLSKLREEF-AIVGDVRGKGLMIGVDL 135
++E + V G LL L +L EF +V + RG+GLM DL
Sbjct: 334 IIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDL 380
>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated.
Length = 456
Score = 39.5 bits (93), Expect = 0.002
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 93 VLERFVHTYVVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVP 144
++ER V G +L L +L + +VG+VRG GL+ ++LV+DK T+
Sbjct: 345 IVER-VRD-DTGPYLQKRLREL-ADHPLVGEVRGVGLVGAIELVKDKATRER 393
>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III.
Length = 338
Score = 39.2 bits (92), Expect = 0.002
Identities = 15/35 (42%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQ 137
G++L L L+++ ++GDVRGKGLMI +++V+
Sbjct: 305 KGDYLRKGLLALQDK-PVIGDVRGKGLMIAIEIVK 338
>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional.
Length = 377
Score = 37.6 bits (88), Expect = 0.006
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 104 GNFLLTHLSKLREEFAIVGDVRGKGLMIGVDL 135
G + L L + E V ++RGKGLMIG++
Sbjct: 296 GEYFLQKLQEELEHLECVKNIRGKGLMIGIEC 327
>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase;
Provisional.
Length = 459
Score = 37.0 bits (86), Expect = 0.013
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 104 GNFLLTHLSKLREEFA-IVGDVRGKGLMIGVDLVQD 138
G++LL +L E+ +V + RGKG+++ ++ V +
Sbjct: 363 GDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDN 398
>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional.
Length = 421
Score = 36.7 bits (85), Expect = 0.014
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMT-HILDSCKEHG 161
+G L+ L K + + D+R +G M+ V+ D +T P S T E G
Sbjct: 326 LGAHLVEVLEKAKASCPAIVDIRARGSMVAVEF-NDPQTGKP--SPEFTRQYQRQALEEG 382
Query: 162 LLLGRGGLSGNTLTALQP 179
LLL G+ GN + L P
Sbjct: 383 LLLLSCGVHGNVIRFLYP 400
>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate
transaminase. All members of the seed alignment have
been demonstrated experimentally to act as EC 2.6.1.62,
an enzyme in the biotin biosynthetic pathway. Alternate
names include 7,8-diaminopelargonic acid
aminotransferase, DAPA aminotransferase, and
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase. The gene symbol is bioA in E. coli and
BIO3 in S. cerevisiae [Biosynthesis of cofactors,
prosthetic groups, and carriers, Biotin].
Length = 417
Score = 36.3 bits (85), Expect = 0.015
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 107 LLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGLLL 164
L L+ LR+ V DVR G + V+LV+D E I E G+LL
Sbjct: 335 LRAGLAPLRD-HPGVADVRVLGAIGAVELVRDVEPY------IGAKIQQFFLERGVLL 385
>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional.
Length = 425
Score = 36.3 bits (84), Expect = 0.018
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGL 162
+GN L L+ LRE + D+RG G M V+ D ++ +P ++ + E GL
Sbjct: 326 LGNRLKQRLASLRETVPEIADIRGPGFMNAVEF-NDADSGLP-SAEFANRVRLKALEKGL 383
Query: 163 LLGRGGLSGNTLTALQP 179
+L G+ GN + L P
Sbjct: 384 ILLTCGVHGNVIRFLAP 400
>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional.
Length = 389
Score = 36.0 bits (84), Expect = 0.022
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 14/78 (17%)
Query: 103 VGNFLLTHLSKLREEF-AIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHG 161
+G +L L L + F ++ +VRGKGL++G+ V N + + D
Sbjct: 303 MGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCVVP-------NRDLVQALRDE----- 350
Query: 162 LLLGRGGLSGNTLTALQP 179
LL G N + L P
Sbjct: 351 GLLTVGA-GDNVVRLLPP 367
>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase.
Length = 504
Score = 35.2 bits (81), Expect = 0.048
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 120 IVGDVRGKGLMIGVDLVQDKETKVPLNSRH--MTHILDSCKEHGLLL 164
I+G++RG GL++G + V +K P + + CK+ G+L+
Sbjct: 412 IIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLV 458
>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional.
Length = 398
Score = 34.1 bits (79), Expect = 0.085
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 19/67 (28%)
Query: 107 LLTHLSKLREEFA---------IVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSC 157
LL + +L E+ +V VRG+GL++G+ L + +
Sbjct: 304 LLENAERLGEQLRAGIEALGHPLVDHVRGRGLLLGIVLTAP----------VAKAVEAAA 353
Query: 158 KEHGLLL 164
+E G L+
Sbjct: 354 REAGFLV 360
>gnl|CDD|179933 PRK05093, argD, bifunctional
N-succinyldiaminopimelate-
aminotransferase/acetylornithine transaminase protein;
Reviewed.
Length = 403
Score = 34.1 bits (79), Expect = 0.090
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 107 LLTHLSKLREEFAIVGDVRGKGLMIGVDL 135
+ L K+ +++ + ++RG GL+IG +L
Sbjct: 316 FVDGLQKINQKYGVFSEIRGMGLLIGAEL 344
>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional.
Length = 421
Score = 33.9 bits (77), Expect = 0.098
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 90 KKSVLERFVHTYVVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRH 149
K+S+ ER +G L L +E + VRG G MI + D +T P ++
Sbjct: 316 KESLCERANQ---LGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEFN-DPQTGEP-SAAI 370
Query: 150 MTHILDSCKEHGLLLGRGGLSGNTLTALQP 179
I GLLL G GN + L P
Sbjct: 371 AQKIQQRALAQGLLLLTCGAYGNVIRFLYP 400
>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed.
Length = 401
Score = 34.0 bits (78), Expect = 0.11
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 102 VVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQD 138
+G + L L +R IV +VRG+GLM+ V+L +
Sbjct: 315 EMGAYFLEGLRSIRS--NIVREVRGRGLMLAVELEPE 349
>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate
aminotransferase. Members of this family of class III
pyridoxal-phosphate-dependent aminotransferases are
diaminobutyrate--2-oxoglutarate aminotransferase (EC
2.6.1.76) that catalyze the first step in ectoine
biosynthesis from L-aspartate beta-semialdehyde. This
family is readily separated phylogenetically from
enzymes with the same substrate and product but involved
in other process such as siderophore (SP|Q9Z3R2) or
1,3-diaminopropane (SP|P44951) biosynthesis. The family
TIGR00709 previously included both groups but has now
been revised to exclude the ectoine biosynthesis
proteins of this family. Ectoine is a compatible solute
particularly effective in conferring salt tolerance
[Cellular processes, Adaptations to atypical
conditions].
Length = 412
Score = 32.6 bits (75), Expect = 0.24
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 110 HLSKLREEF-AIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGLLLGRGG 168
L ++ E+ ++ VRG+GLM G++ + I + E+GL++ G
Sbjct: 330 RLDRIVAEYPELIKQVRGRGLMQGIECG---------DGDLAGKIAKAAFENGLIIETSG 380
Query: 169 LSGNTLTALQP 179
+ + L P
Sbjct: 381 PNDEVIKLLPP 391
>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate
aminotransferase; Validated.
Length = 425
Score = 32.5 bits (75), Expect = 0.27
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 104 GNFLLTHLSKLREEF-AIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGL 162
G + L ++ ++ + +VRG+G+M G+D D E L + I E+GL
Sbjct: 328 GELVRERLEEIAAKYPGLGAEVRGRGMMQGID-FGDGE----LAGK----IAAEAFENGL 378
Query: 163 LLGRGG 168
++ G
Sbjct: 379 IIETSG 384
>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine
family. This family of proteins, for which ornithine
aminotransferases form an outgroup, consists mostly of
proteins designated acetylornithine aminotransferase.
However, the two very closely related members from E.
coli are assigned different enzymatic activities. One is
acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an
enzyme of arginine biosynthesis, while another is
succinylornithine aminotransferase, an enzyme of the
arginine succinyltransferase pathway, an
ammonia-generating pathway of arginine catabolism (See
MEDLINE:98361920). Members of this family may also act
on ornithine, like ornithine aminotransferase (EC
2.6.1.13) (see MEDLINE:90337349) and on
succinyldiaminopimelate, like
N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17,
DapC, an enzyme of lysine biosynthesis) (see
MEDLINE:99175097).
Length = 379
Score = 32.3 bits (74), Expect = 0.34
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 95 ERFV-HTYVVGNFLLTHLSKLREEFA--IVGDVRGKGLMIGVDLVQD 138
ER + + G++ +L E +VRGKGLM+G++L
Sbjct: 289 ERLLENVKEKGDYFK---ERLEELGKNYPNKEVRGKGLMLGIELEAP 332
>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase.
Length = 474
Score = 32.1 bits (73), Expect = 0.39
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 16/66 (24%)
Query: 104 GNFLLTHLSKLREEFA-IVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHI--LDSC--- 157
G L L K++++F ++ +VRG+GL+ V LNS + + D C
Sbjct: 354 GQELRDQLQKIQKQFPKLIKEVRGRGLLNAVV----------LNSPKLGPVSAYDVCLKL 403
Query: 158 KEHGLL 163
KE GLL
Sbjct: 404 KERGLL 409
>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional.
Length = 375
Score = 31.7 bits (72), Expect = 0.50
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 104 GNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQD 138
GN+L L K ++ V VRG G MIG++ D
Sbjct: 294 GNYLQEQLQKALQDKETVTTVRGLGYMIGIETTAD 328
>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 466
Score = 31.3 bits (71), Expect = 0.75
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 121 VGDVRGKGLMIGVDLVQDKETKVP 144
V +VR G+++ +++VQDK +K P
Sbjct: 368 VAEVRQTGMILAIEMVQDKASKTP 391
>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.
Length = 396
Score = 31.2 bits (71), Expect = 0.78
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 104 GNFLLTHLSKLREEFAIVGDVRGKGLMIGVDL 135
G + L ++ + ++ +VRG+GL IGV+L
Sbjct: 316 GEYFKEQLKEI--DNPMIKEVRGRGLFIGVEL 345
>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family.
Members of the seed alignment for this protein family
are the enzyme succinylornithine transaminase (EC
2.6.1.81), which catalyzes the third of five steps in
arginine succinyltransferase (AST) pathway, an
ammonia-releasing pathway of arginine degradation. All
seed alignment sequences are found within arginine
succinyltransferase operons, and all proteins that score
above 820.0 bits should function as succinylornithine
transaminase. However, a number of sequences extremely
closely related in sequence, found in different genomic
contexts, are likely to act in different biological
processes and may act on different substrates. This
model is desigated subfamily rather than equivalog,
pending further consideration, for this reason [Energy
metabolism, Amino acids and amines].
Length = 397
Score = 30.9 bits (70), Expect = 0.85
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 107 LLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGLL 163
+ L K+ + + ++RGKGL+IG L + + K +++ E G++
Sbjct: 311 FVDGLEKINARYNVFSEIRGKGLLIGAVLTEAYQGKA-------KQFVNAAAEEGVI 360
>gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional.
Length = 402
Score = 30.5 bits (69), Expect = 1.1
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 251 FVPAGRIPIIRPNFSTAAAKLADE 274
FVPA R+ I+P+ STAAA A E
Sbjct: 4 FVPAARVSRIKPSPSTAAAARARE 27
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 30.6 bits (69), Expect = 1.2
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 148 RHMTHILDSCKEHG--LLLGRGGLSGNTLTALQPKLLNYWTDFVGTPCLDCES-----KG 200
R +TH LD + H L G G+ TL+ + K LN T PC C + +G
Sbjct: 26 RALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEG 85
Query: 201 TFQSY 205
F Y
Sbjct: 86 RFVDY 90
>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase. This model
describes the final step in the biosynthesis of
ornithine from glutamate via the non-acetylated pathway.
Ornithine amino transferase takes L-glutamate
5-semialdehyde and makes it into ornithine, which is
used in the urea cycle, as well as in the biosynthesis
of arginine. This model includes low-GC bacteria and
eukaryotic species. The genes from two species are
annotated as putative acetylornithine aminotransferases
- one from Porphyromonas gingivalis (OMNI|PG1271), and
the other from Staphylococcus aureus (OMNI|SA0170).
After homology searching using BLAST it was determined
that these two sequences were most closely related to
ornithine aminotransferases. This model's seed includes
one characterized hit, from Bacillus subtilis
(SP|P38021).
Length = 401
Score = 30.4 bits (69), Expect = 1.2
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 14/63 (22%)
Query: 104 GNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSC---KEH 160
G L KL + I+ +VRG+GL+ + + E+K D C KE
Sbjct: 316 GEIFRDQLKKLPKP--IITEVRGRGLLNAIVI---DESKTGRT------AWDLCLKLKEK 364
Query: 161 GLL 163
GLL
Sbjct: 365 GLL 367
>gnl|CDD|132511 TIGR03471, HpnJ, hopanoid biosynthesis associated radical SAM
protein HpnJ. The sequences represented by this model
are members of the radical SAM superfamily of enzymes
(pfam04055). These enzymes utilize an iron-sulfur redox
cluster and S-adenosylmethionine to carry out diverse
radical mediated reactions. The member of this clade
from Acidithiobacillus ferrooxidans ATCC 23270
(AFE_0975) is found in the same locus as squalene-hopene
cyclase (SHC, TIGR01507) and other genes associated with
the biosynthesis of hopanoid natural products.
Similarly, in Ralstonia eutropha JMP134 (Reut_B4901)
this gene is adjacent to HpnAB, IspH and HpnH
(TIGR03470), although SHC itself is elsewhere in the
genome. Notably, this gene (here named HpnJ) and three
others form a conserved set (HpnIJKL) which occur in a
subset of all genomes containing the SHC enzyme. This
relationship was discerned using the method of partial
phylogenetic profiling. This group includes Zymomonas
mobilis, the organism where the initial hopanoid
biosynthesis locus was described consisting of the genes
HpnA-E and SHC (HpnF). Continuing past SHC are found a
phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and
another radical SAM enzyme (ZMO0874), HpnH. Although
discontinuous in Z. mobilis, we continue the gene symbol
sequence with HpnIJKL. One of the well-described
hopanoid intermediates is bacteriohopanetetrol. In the
conversion from hopene several reactions must occur in
the side chain for which a radical mechanism might be
reasonable. These include the four (presumably
anaerobic) hydroxylations and a methyl shift.
Length = 472
Score = 29.3 bits (66), Expect = 2.8
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
Query: 30 QCLQICRFVQKDFKGSFWDKLIVHTSTCTFENFIKIKYQILKTPAHKLKISDTVRPHV 87
L I KD+ D +++HTST +F + +K + LK KI V HV
Sbjct: 61 DTLAIA----KDY-----DLVVLHTSTPSFPSDVKTA-EALKEQNPATKIG-FVGAHV 107
>gnl|CDD|227580 COG5255, COG5255, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 239
Score = 29.0 bits (65), Expect = 3.1
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 85 PHVQIKKSVLERFVHTYVVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVP 144
H+ IK F+ GN ++ HL + +V +R + L + DK T P
Sbjct: 24 NHLGIKFDANGEFLP--FPGNTVVCHLVTGSDTEEVVLIIRSRYLEMPF---ADKLTFTP 78
Query: 145 LNSRHMT 151
++S HMT
Sbjct: 79 VSSLHMT 85
>gnl|CDD|184921 PRK14957, PRK14957, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 546
Score = 29.3 bits (65), Expect = 3.7
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 145 LNSRHMTHILDSCKEHG--LLLGRGGLSGNTLTALQPKLLNYWTDFVGTPCLDCES 198
LNS + H L++ K H L G G+ TL L K LN T PC CE+
Sbjct: 25 LNS--LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78
>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase.
Length = 382
Score = 28.5 bits (64), Expect = 4.6
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 12/76 (15%)
Query: 104 GNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGLL 163
G +L L + V +VRG GL++G+ L VP ++D+C++ GLL
Sbjct: 296 GEYLRELLRRKLGGNPHVKEVRGVGLLVGIQL------DVPAGP-----LVDACRDSGLL 344
Query: 164 LGRGGLSGNTLTALQP 179
+ G G+ + + P
Sbjct: 345 VLTAG-KGDVVRLVPP 359
>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine
transaminase/acetylornithine transaminase; Provisional.
Length = 406
Score = 28.5 bits (64), Expect = 5.6
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 111 LSKLREEFAIVGDVRGKGLMIGVDLVQD 138
L+ + + + ++RG GL+IG L +
Sbjct: 319 LNTINARYGLFSEIRGLGLLIGCVLNAE 346
>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional.
Length = 460
Score = 28.3 bits (63), Expect = 5.6
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 114 LREEFA---IVGDVRGKGLMIGVDLVQDKETK 142
LRE F +VG+V+G GL+ + +DK T+
Sbjct: 364 LREVFGDHPLVGEVQGAGLVAALQFAEDKATR 395
>gnl|CDD|220669 pfam10272, Tmpp129, Putative transmembrane protein precursor. This
is a family of proteins conserved from worms to humans.
The proteins are purported to be transmembrane
protein-precursors but the function is unknown.
Length = 356
Score = 27.8 bits (62), Expect = 7.7
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 76 KLKISDTVRPHVQIKKSVLERFVHTYV 102
+L+ V P+V I ++++ERF+ T+
Sbjct: 226 RLEAPIRVAPNVVIHRTLMERFLETFK 252
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 28.1 bits (62), Expect = 8.2
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 202 FQSYAGSINKLTGKNSSNTLKNAFRKNRLQLLPLREKIFCR 242
F+S+A SI + + K FRK +P R + +
Sbjct: 778 FKSFASSIAEAS--EGRIEFKVQFRKLGFYGVPFRSSVMIK 816
>gnl|CDD|107379 cd06384, PBP1_NPR_B, Ligand-binding domain of type B natriuretic
peptide receptor. Ligand-binding domain of type B
natriuretic peptide receptor (NPR-B). NPR-B is one of
three known single membrane-spanning natriuretic peptide
receptors that have been identified. Natriuretic
peptides are family of structurally related but
genetically distinct hormones/paracrine factors that
regulate blood volume, blood pressure, ventricular
hypertrophy, pulmonary hypertension, fat metabolism, and
long bone growth. In mammals there are three natriuretic
peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B
(or GC-B) is a transmembrane guanylyl cyclase, an enzyme
that catalyzes the synthesis of cGMP. NPR-B is the
predominant natriuretic peptide receptor in the brain.
The rank of order activation of NPR-B by natriuretic
peptides is CNP>>ANP>BNP. Homozygous inactivating
mutations in human NPR-B cause a form of short-limbed
dwarfism known as acromesomelic dysplasia type
Maroteaux.
Length = 399
Score = 27.8 bits (62), Expect = 8.3
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Query: 250 RFVPAGRIPIIRPNFSTAAA------KLADERDTLRSTNPSDPKLKELNYTI 295
RF R+P+I TA A DE T T PS KL E +
Sbjct: 91 RFATHWRLPLI-----TAGAPAFGFSNKTDEYRTTVRTGPSTTKLGEFVNHL 137
>gnl|CDD|132479 TIGR03438, egtD_ergothio, dimethylhistidine N-methyltransferase.
This model represents a distinct set of uncharacterized
proteins found in the bacteria. Analysis by PSI-BLAST
shows remote sequence homology to methyltransferases
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Glutathione and analogs].
Length = 301
Score = 27.5 bits (62), Expect = 8.9
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 15/49 (30%)
Query: 103 VGNF-------LLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVP 144
+GNF L + +L G GL+IGVDLV+D
Sbjct: 148 IGNFTPEEAVAFLRRIRQLLG--------PGGGLLIGVDLVKDPAVLEA 188
>gnl|CDD|130336 TIGR01269, Tyr_3_monoox, tyrosine 3-monooxygenase, tetrameric.
This model describes tyrosine 3-monooxygenase, a member
of the family of tetrameric, biopterin-dependent
aromatic amino acid hydroxylases found in metazoans. It
is closely related to tetrameric
phenylalanine-4-hydroxylase and tryptophan
5-monooxygenase, and more distantly related to the
monomeric phenylalanine-4-hydroxylase found in some
Gram-negative bacteria.
Length = 457
Score = 27.6 bits (61), Expect = 9.9
Identities = 9/38 (23%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 120 IVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSC 157
++ +RG + G++L+ ++ K +H++ LD C
Sbjct: 100 LIESLRGNSFISGINLLNNQNVKEDWFPKHISE-LDKC 136
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.416
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,542,087
Number of extensions: 1568932
Number of successful extensions: 1349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1338
Number of HSP's successfully gapped: 71
Length of query: 329
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 232
Effective length of database: 6,635,264
Effective search space: 1539381248
Effective search space used: 1539381248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)