RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7882
(329 letters)
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 92.6 bits (231), Expect = 4e-21
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 99 HTYVVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCK 158
G L LS+L + ++GD+RG+GL G++LV D++++ P ++
Sbjct: 324 MAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREP-ARAETAKLIYRAY 382
Query: 159 EHGLLLGRGGLSGNTL 174
+ GL++ G++GN L
Sbjct: 383 QLGLVVYYVGMNGNVL 398
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 88.0 bits (219), Expect = 1e-19
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGL 162
+G+ L L L E F +GDVRG+GL++GV++V+D+ TK P I C GL
Sbjct: 333 MGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEP-ADGLGAKITRECMNLGL 391
Query: 163 LLG--RGGLSGNTL 174
+ + G
Sbjct: 392 SMNIVQLPGMGGVF 405
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 83.4 bits (207), Expect = 5e-18
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGL 162
+G L L + E+ +GDVRG G MI ++L +D + P +++ I+ ++ GL
Sbjct: 327 LGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKP-DAKLTAEIVARARDKGL 385
Query: 163 LLGRGGLSGNTL 174
+L G N L
Sbjct: 386 ILLSCGPYYNVL 397
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 81.1 bits (201), Expect = 3e-17
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGL 162
+ + L +L+ E +GDVRG+G MI ++LV+ T P ++ + G+
Sbjct: 355 IEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAG-TTEP-DADLTKALCAGAHAAGV 412
Query: 163 LLGRGGLSGNTL 174
++ G GN +
Sbjct: 413 IVLSCGTYGNVV 424
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 79.6 bits (197), Expect = 1e-16
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGL 162
+ + + LS L EE I+G+VRG+G M+ +++V+ T P ++ I G+
Sbjct: 353 IEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPG-TLEP-DAALTKSIAAEALSQGV 410
Query: 163 LLGRGGLSGNTL 174
L+ G GN +
Sbjct: 411 LILTCGTFGNVI 422
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 77.6 bits (192), Expect = 4e-16
Identities = 32/76 (42%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGL 162
+G+ LL L + E +VGD+RGKGL++G++LV DKETK P+++ + ++++CKE GL
Sbjct: 350 MGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGL 409
Query: 163 LLGRGGLS----GNTL 174
++GR G++ N L
Sbjct: 410 IIGRNGMTTAGYNNIL 425
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 70.7 bits (174), Expect = 8e-14
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 99 HTYVVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTH--ILDS 156
+ G + L+K VG+VRG G++ V+ V DK+ +V ++ + +
Sbjct: 353 NAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATA 412
Query: 157 CKEHGLLLGRGGLSGNTLTALQPKL 181
G++ R G+ L P L
Sbjct: 413 LAASGVIG-RAMPQGDIL-GFAPPL 435
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 64.9 bits (159), Expect = 8e-12
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPL--NSRHMTHILDSCKEH 160
+ L + E +G+ RG G M ++ V+DK +K P N I ++C +
Sbjct: 366 LAPRFEERLKHIAE-RPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDL 424
Query: 161 GLLL 164
GL+
Sbjct: 425 GLIC 428
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 64.1 bits (157), Expect = 1e-11
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHM-THILDSCKEHG 161
G LL L L+ F + VRG GL++GV + D T + + + I + + G
Sbjct: 325 RGAQLLAGLQALQARFPQMMQVRGTGLLLGVV-LGDLATGQAFETPGIASRIGAAALKRG 383
Query: 162 LLL-----GRGGLSGNTL 174
L+ G+ L
Sbjct: 384 LITYPGSGAEPNGRGDHL 401
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium violaceum}
PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 62.6 bits (153), Expect = 4e-11
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPL--NSRHMTHILDSCKEH 160
+G ++ + F V DVRG G++ LV++K + T D +
Sbjct: 352 IGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRN 411
Query: 161 GLLLGRGG 168
L++ G
Sbjct: 412 NLIMRACG 419
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 62.3 bits (152), Expect = 6e-11
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 12/73 (16%)
Query: 103 VGNFLLTHLSKLREEF-AIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHG 161
G LLT L L+ + + VRG+G D + ++ + G
Sbjct: 383 AGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDESIRN---------KLISIARNKG 433
Query: 162 LLLGRGGLSGNTL 174
++LG G ++
Sbjct: 434 VMLGGCG--DKSI 444
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 61.1 bits (149), Expect = 1e-10
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPL--NSRHMTHILDSCKEH 160
+ ++ L+ LR+ V + R GL+ V + D + I + C E
Sbjct: 358 MADYFAAALASLRD-LPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFEL 416
Query: 161 GLLLGRGG 168
GL++ G
Sbjct: 417 GLIVRPLG 424
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.10A
{Silicibacter pomeroyi}
Length = 472
Score = 59.5 bits (145), Expect = 4e-10
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 102 VVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTH---ILDSCK 158
V +L L + +VG+ + G+M + L +K ++ S T + C
Sbjct: 354 VAAPYLKEKWEALTD-HPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCF 412
Query: 159 EHGLLLGRGG 168
+ L++ G
Sbjct: 413 ANNLIMRHVG 422
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 58.4 bits (142), Expect = 9e-10
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 18/83 (21%)
Query: 93 VLERFV-HTYVVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMT 151
+++ + H +G L L DVRG GL G++ + K
Sbjct: 326 IVKDLLPHVNEIGKIFAEELQGL------ADDVRGIGLAWGLEYNEKKVRD--------- 370
Query: 152 HILDSCKEHGLLLGRGGLSGNTL 174
I+ + GLLL G + +
Sbjct: 371 RIIGESFKRGLLLLPAG--RSAI 391
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 58.4 bits (142), Expect = 1e-09
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 95 ERFV-HTYVVGNFLLTHLSKLREEF-AIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTH 152
E G +L L +L +F A+V D RG+GLM L +
Sbjct: 351 EGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPTTADRD---------E 401
Query: 153 ILDSCKEHGLLLGRGG 168
++ + +++ G
Sbjct: 402 LIRQLWQRAVIVLPAG 417
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 56.4 bits (137), Expect = 4e-09
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGL 162
+ HL + E+F I D+RG GL+IG +L + + L + E G+
Sbjct: 329 KRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRA-------RDFLYAGAEAGV 381
Query: 163 LLGRGGLSGNTL 174
++ G + +
Sbjct: 382 MVLNAG--ADVM 391
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 55.7 bits (135), Expect = 6e-09
Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 5/66 (7%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGL 162
V L ++ V D+R GL + + + + + G
Sbjct: 357 VAPHFEKALHGIKG-AKNVIDIRNFGLAGAIQIAPRDGDAIVRPFE----AGMALWKAGF 411
Query: 163 LLGRGG 168
+ GG
Sbjct: 412 YVRFGG 417
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, biotin biosynthesis, pyridoxal
phosphate, adenosyl-L-methionine; HET: PLP; 1.90A
{Bacillus subtilis} PDB: 3drd_A 3du4_A*
Length = 448
Score = 55.3 bits (134), Expect = 1e-08
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNS--RHMTHILDSCKEH 160
L L L VGD+R G M G +LV+ KETK P + R + +E
Sbjct: 347 KSKKLHFLLQDLHA-LPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMREL 405
Query: 161 GLLL 164
G+L
Sbjct: 406 GMLT 409
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (ACOA structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 53.7 bits (130), Expect = 3e-08
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGL 162
GN+L+ L +++EE+ +V DVRG GLMIG+ ++ + + C E+ L
Sbjct: 310 KGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNRE---------VATKCFENKL 360
Query: 163 LLGRGGLSGNTL 174
L+ G NT+
Sbjct: 361 LVVPAG--NNTI 370
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 52.9 bits (128), Expect = 5e-08
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGL 162
+ +L L +L EF +G G M G+ L + + ++ C+E+ L
Sbjct: 308 LTPYLEQSLDELINEFDFCKKRKGLGFMQGLSLDKSVKVA---------KVIQKCQENAL 358
Query: 163 LLGRGGLSGNTL 174
LL G N L
Sbjct: 359 LLISCG--ENDL 368
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 52.2 bits (126), Expect = 8e-08
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGL 162
+G L +L + ++ IV DVRGKGL+ ++ + + + + KE+GL
Sbjct: 341 LGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLK--------LKENGL 392
Query: 163 LL 164
+
Sbjct: 393 IT 394
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 1e-07
Identities = 59/373 (15%), Positives = 94/373 (25%), Gaps = 136/373 (36%)
Query: 24 GTYLGFQCLQICRFVQKDFKGSFWD--KLI-------------VHTSTCTFE-------- 60
G +LG+ + V+ G F L +H
Sbjct: 62 GKFLGY----VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 61 ---NFIKIKYQ---ILKTPAHKLKISDTVRPHVQIKKSVL------------------ER 96
IK + K P K S R V + L +
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFR-AVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 97 FVHTY--VVGNFLLTHLSKLREEFAIVGDVR---GKGLMIGVDLVQDKETK--------- 142
+ TY +VG+ + L E D +GL I ++ +++
Sbjct: 177 Y-QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI-LEWLENPSNTPDKDYLLSI 234
Query: 143 ---VPLNS-RHMTHILDSCKEHGLLLG--RGGLSGNT------LTALQPKLLNYWTDF-- 188
PL + H + + K G G R L G T +TA+ + W F
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 189 -----------VG------TPCLDCESKGTFQSYAGSINK------LTGKNSSNTLKNAF 225
+G P S + ++
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 226 RKNRLQLLPLREKIFCRNLNNGRIRFVPAGRIPIIRPNFSTAAAKLADERDTLRSTNPSD 285
+ N LP +++ +L NG V +G P
Sbjct: 355 KTN--SHLPAGKQVEI-SLVNGAKNLVVSG--------------------------PPQS 385
Query: 286 PKLKELNYTIRKM 298
L LN T+RK
Sbjct: 386 --LYGLNLTLRKA 396
Score = 50.0 bits (119), Expect = 6e-07
Identities = 47/260 (18%), Positives = 80/260 (30%), Gaps = 74/260 (28%)
Query: 82 TVRPHVQIKKSVLERFVHTYVVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVD-LVQDKE 140
+ RP + + LE H +V S+L+E+F K L + D E
Sbjct: 5 STRP-LTLSHGSLE---HVLLVPTASFFIASQLQEQFN-------KILPEPTEGFAADDE 53
Query: 141 --TKVPLNSRHMTHILDSCKEHG---------LLLG---RGGLSGNTLTALQPKLLNYWT 186
T L + + ++ + L L L GN + AL KLL
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ--- 110
Query: 187 DFVGTPCLDCESKGTFQSY---AGSINKLTGKNSSNTLKNAFRKNRLQLLPLREKIFCRN 243
++K ++Y + K S++ L A + QL+ IF
Sbjct: 111 ---ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA----IF--- 160
Query: 244 LNNG-----------RIRFVPAGRI--PIIRPNFSTAAAKLADERDTLRSTNPSDPKLKE 290
G R + + ++ +A L++ L T K+
Sbjct: 161 --GGQGNTDDYFEELRDLY----QTYHVLVGDLIKFSAETLSE----LIRTTLDAEKVFT 210
Query: 291 LNYTIRKMVYEYKKNKWLEH 310
I +WLE+
Sbjct: 211 QGLNIL---------EWLEN 221
Score = 50.0 bits (119), Expect = 7e-07
Identities = 35/138 (25%), Positives = 46/138 (33%), Gaps = 40/138 (28%)
Query: 70 LKTPAHKLKIS---DTVR-PHVQIKKSVLERFV------HT-YVVG--NFLLTHLSKLRE 116
L K K D R P + K RF+ H+ +V + + L K
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 117 EF-----AI-V-----G-DVRGKGLMIGVDLVQDKETKVPLN-----SRHMTHILDSCKE 159
F I V G D+R I +V D ++P+ THILD
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISERIV-DCIIRLPVKWETTTQFKATHILD---- 503
Query: 160 HGLLLGRGGLSG-NTLTA 176
G GG SG LT
Sbjct: 504 ----FGPGGASGLGVLTH 517
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 47.2 bits (113), Expect = 4e-06
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGL 162
+G L L KL + +V VRGKGL+ + + + K+ + +++GL
Sbjct: 352 LGIILRNELMKLPSD--VVTAVRGKGLLNAIVIKETKDWDAW-------KVCLRLRDNGL 402
Query: 163 LL 164
L
Sbjct: 403 LA 404
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 46.5 bits (110), Expect = 8e-06
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 106 FLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGLLL 164
+ + ++ + V V G + ++L D S + +L +E G+
Sbjct: 738 WDEELVQQISS-HSAVQRVVVIGTLFALELKADASNS-GYASLYAKSLLIMLREDGIFT 794
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 45.2 bits (108), Expect = 2e-05
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 12/62 (19%)
Query: 103 VGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGL 162
+G + + L + + +VRG GLM+G++L + + KEH +
Sbjct: 313 LGPWFMEKLRAIPSPK--IREVRGMGLMVGLELKEKAAPYI----------ARLEKEHRV 360
Query: 163 LL 164
L
Sbjct: 361 LA 362
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 44.0 bits (105), Expect = 4e-05
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 19/83 (22%)
Query: 93 VLERFV-HTYVVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMT 151
+E+ + H VGN+ L +L + V+G+GLM+G++L ++
Sbjct: 287 EVEKLLPHVREVGNYFKEKLKELGKG-----KVKGRGLMLGLELERE-----------CK 330
Query: 152 HILDSCKEHGLLLGRGGLSGNTL 174
+ E GLL+ G L
Sbjct: 331 DYVLKALEKGLLINCTA--GKVL 351
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 44.1 bits (105), Expect = 4e-05
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 14/71 (19%)
Query: 95 ERFV-HTYVVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHI 153
E+ + +G L+ L ++ ++ +VRGKGL IG++L +
Sbjct: 302 EKLTERSLQLGEKLVGQLKEIDNP--MITEVRGKGLFIGIELNEPA-----------RPY 348
Query: 154 LDSCKEHGLLL 164
+ K GLL
Sbjct: 349 CEQLKAAGLLC 359
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 4e-05
Identities = 62/378 (16%), Positives = 106/378 (28%), Gaps = 118/378 (31%)
Query: 10 GVVVSAVDFGSGDNGTYLGFQCL--QICRF--VQKDFKGS-FWDKLI-VHTSTCTFENFI 63
V++ G G+ G + +C VQ FW L ++ E
Sbjct: 152 NVLID------GVLGS--GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 64 KIKYQILKTPAHKLKISDTVRPHVQIKKSVLERFVHTYVVGNFLLTHL-----SKLREEF 118
K+ YQI + S ++ + ++ L R + + N LL L +K F
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LLNVQNAKAWNAF 262
Query: 119 AIVGDVRGKGLMIGVD------LVQDKETKVPLNSRHMTHILDSCKEHGLL--------- 163
++ K L+ L T + L+ H + L + LL
Sbjct: 263 ----NLSCKILLTTRFKQVTDFLSAATTTHISLD--HHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 164 -LGRGGLSGNTL------TALQ--PKLLNYWTDFVGTPCLDCESKGTFQSYAGSINKLTG 214
L R L+ N +++ + W ++C+ T S+N L
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKH------VNCDKLTTIIE--SSLNVL-- 366
Query: 215 KNSSNTLKNAFRKNRLQLLPLREKIFCRNLNNGRIRFVPAGRIPIIRPNFSTA-----AA 269
+ F + L + P I P + +I + +
Sbjct: 367 --EPAEYRKMFDR--LSVFPPSAHI-------------PTILLSLIWFDVIKSDVMVVVN 409
Query: 270 KLAD----ERDTLRST----------NPSDPKLKELNYTIRKMVYEYKKNKWLE------ 309
KL E+ ST L+ R +V Y K +
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH---RSIVDHYNIPKTFDSDDLIP 466
Query: 310 -------------HLKEA 314
HLK
Sbjct: 467 PYLDQYFYSHIGHHLKNI 484
Score = 34.8 bits (79), Expect = 0.037
Identities = 50/381 (13%), Positives = 110/381 (28%), Gaps = 117/381 (30%)
Query: 19 GSGDNGTYLGFQCL------QICRFV----QKDFKGSFWDKLIVHTSTCTFENFIKIKYQ 68
+GT F L + +FV + ++ + + + + Y
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-KFLMSPI---KTEQRQPSMMTRMYI 113
Query: 69 ILKTPAH-------KLKISDTVRPHVQIKKSVLERFVHTYVVGNFLLTHLSKLREEFAIV 121
+ + K +S ++P++++++ L +LR ++
Sbjct: 114 EQRDRLYNDNQVFAKYNVS-RLQPYLKLRQ------------------ALLELRPAKNVL 154
Query: 122 GDVRGKGLMIG-------VDLVQDKETKVPLNSR-H-MTHILDSCKEHGLLL-------- 164
+ G ++G +D+ + + ++ + + L +C +L
Sbjct: 155 --IDG---VLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LKNCNSPETVLEMLQKLLY 207
Query: 165 -------GRGGLSGNT---LTALQPKLLNYWTDFVGTPCL----DCESKGTFQSYAGSIN 210
R S N + ++Q +L CL + ++ + ++ S
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 211 KL-TGKNSSNT--LKNAFRK-----NRLQLLPLRE--KIFCRNLNNGRIRFVPAGRIPI- 259
L T + T L A + L E + + L+ +P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD------CRPQDLPRE 321
Query: 260 ---IRP-NFSTAAAKLADERDTLRSTNPSDPKLKELNYTIRKMV-----YEYKKNKWLEH 310
P S A + D N +L I + EY+K +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLA--TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM--FDR 377
Query: 311 LKEASFNKG---PKN----LW 324
L + F P +W
Sbjct: 378 L--SVFPPSAHIPTILLSLIW 396
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold
type I, subclass II, homodimer; HET: LLP; 1.71A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A*
1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A*
1dty_A*
Length = 429
Score = 37.9 bits (89), Expect = 0.003
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 10/58 (17%)
Query: 107 LLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGLLL 164
L L+ R+ +V DVR G + V+ + E G+ +
Sbjct: 343 LREQLAPARD-AEMVADVRVLGAIGVVETTHPVNMAA---------LQKFFVEQGVWI 390
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase,
transferase-transferase inhibitor complex; HET: PL8;
1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A*
3lv2_A*
Length = 457
Score = 37.2 bits (87), Expect = 0.006
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 10/59 (16%)
Query: 106 FLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGLLL 164
L L R V DVR G + ++ + + V + + G+ L
Sbjct: 371 GLTAGLDTARA-LPAVTDVRVCGAIGVIECDRPVDLAV---------ATPAALDRGVWL 419
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 1.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 119 AIVGDVRGKGLMIGVDLV 136
AI+G RG GLM +++
Sbjct: 668 AIIGWTRGTGLMSANNII 685
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle,
antiviral protein; 2.40A {Homo sapiens}
Length = 271
Score = 28.0 bits (62), Expect = 4.2
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 53 HTSTCTFENFIKIKYQILKTPAHKL--KISDTVRPHV-QIKKSVLERF 97
+ TFE +K + + L+ PA + ++D VR + E F
Sbjct: 83 FVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEF 130
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.3 bits (60), Expect = 5.2
Identities = 7/16 (43%), Positives = 9/16 (56%), Gaps = 2/16 (12%)
Query: 7 RDCGVVVS--AVDFGS 20
CG+V+S VD S
Sbjct: 46 ALCGLVLSDKLVDTRS 61
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 26.8 bits (59), Expect = 10.0
Identities = 7/53 (13%), Positives = 18/53 (33%)
Query: 32 LQICRFVQKDFKGSFWDKLIVHTSTCTFENFIKIKYQILKTPAHKLKISDTVR 84
+IC F+ + ++ H++ + Y +L + +R
Sbjct: 207 ERICGFLGRPLGKEALGSVVAHSTFSAMKANTMSNYTLLPPSLLDHRRGAFLR 259
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.416
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,023,220
Number of extensions: 292416
Number of successful extensions: 673
Number of sequences better than 10.0: 1
Number of HSP's gapped: 658
Number of HSP's successfully gapped: 41
Length of query: 329
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 235
Effective length of database: 4,077,219
Effective search space: 958146465
Effective search space used: 958146465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)