RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7882
(329 letters)
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 59.1 bits (142), Expect = 2e-10
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 114 LREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGLLLGRGGLSGNT 173
+ E+ +GDVRG G MI ++L +D + P +++ I+ ++ GL+L G N
Sbjct: 337 IAEKHPEIGDVRGLGAMIAIELFEDGDHNKP-DAKLTAEIVARARDKGLILLSCGPYYNV 395
Query: 174 LTALQP 179
L L P
Sbjct: 396 LRILVP 401
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 58.1 bits (139), Expect = 5e-10
Identities = 19/147 (12%), Positives = 40/147 (27%), Gaps = 12/147 (8%)
Query: 29 FQCLQICRFVQKDFKGSFWDKLIVHTSTCTFENFIKIKYQILKTPAHKLKISDTVRPHVQ 88
+ + K ++ E F + + + V
Sbjct: 299 KFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVI 358
Query: 89 IKKSVLERFVHTYVVGNFLLTHLSKLREEF-AIVGDVRGKGLMIGVDLVQDKETKVPLNS 147
+ + G LLT L L+ + + VRG+G D +
Sbjct: 359 NIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDESIRN----- 413
Query: 148 RHMTHILDSCKEHGLLLGRGGLSGNTL 174
++ + G++LG G ++
Sbjct: 414 ----KLISIARNKGVMLGGCG--DKSI 434
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 51.6 bits (122), Expect = 5e-08
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 116 EEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGLLLG--RGGLSGNT 173
E F +GDVRG+GL++GV++V+D+ TK P + I C GL + + G
Sbjct: 344 ERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGL-GAKITRECMNLGLSMNIVQLPGMGGV 402
Query: 174 L 174
Sbjct: 403 F 403
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 49.8 bits (118), Expect = 2e-07
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 110 HLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGLLLGRGGL 169
+L + ++ IV DVRGKGL+ ++ + + I KE+GL+ +
Sbjct: 322 NLKRELKDSKIVRDVRGKGLLCAIEFKNELVN--------VLDICLKLKENGLIT--RDV 371
Query: 170 SGNTL 174
T+
Sbjct: 372 HDKTI 376
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 48.2 bits (114), Expect = 6e-07
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 14/76 (18%)
Query: 99 HTYVVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCK 158
+G + + L + + +VRG GLM+G++L + I K
Sbjct: 301 RAAELGPWFMEKLRAIPSP--KIREVRGMGLMVGLELKEKAAPY----------IARLEK 348
Query: 159 EHGLLLGRGGLSGNTL 174
EH +L + G +
Sbjct: 349 EHRVLALQAG--PTVI 362
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 47.8 bits (113), Expect = 8e-07
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 110 HLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHILDSCKEHGLLLGRGGL 169
L KL + +V VRGKGL+ + + + K+ + +++GLL
Sbjct: 324 ELMKLPSD--VVTAVRGKGLLNAIVIKETKDWD-------AWKVCLRLRDNGLLA--KPT 372
Query: 170 SGNTL 174
G+ +
Sbjct: 373 HGDII 377
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 47.7 bits (112), Expect = 8e-07
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 10/74 (13%)
Query: 95 ERFVHTYVVGNFLLTHLSKLREEFAIVGDVRGKGLMIGVDLVQDKETKVPLNSRHMTHIL 154
+ + L L+ R+ +V DVR G + V+ +
Sbjct: 331 DWQQQVADIEVQLREQLAPARD-AEMVADVRVLGAIGVVETTHPVNMAA---------LQ 380
Query: 155 DSCKEHGLLLGRGG 168
E G+ + G
Sbjct: 381 KFFVEQGVWIRPFG 394
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 34.1 bits (77), Expect = 0.019
Identities = 8/56 (14%), Positives = 13/56 (23%), Gaps = 4/56 (7%)
Query: 117 EFAIVGDVRGKGLMIGV----DLVQDKETKVPLNSRHMTHILDSCKEHGLLLGRGG 168
E M G V + E + + + E G+ L
Sbjct: 343 ETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQ 398
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 346
Score = 26.5 bits (57), Expect = 5.2
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 286 PKLKELNYTIRKMVYEYKKNK-WLEHLKEASFNKGPKNLWKTTSQ 329
P+ + + + + + Y N+ W + KEA N KT
Sbjct: 304 PQFTDFSEGLEETIQWYTDNQDWWKAEKEAV----EANYAKTQEV 344
>d1de4c1 a.48.2.1 (C:609-756) Transferrin receptor ectodomain,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 148
Score = 25.6 bits (56), Expect = 5.2
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 8/55 (14%)
Query: 263 NFSTAAAKLADERDTLRSTNPSDPKLKELNYTIRKM------VYEYKKNKWLEHL 311
+F A ++L + T+ +K+LN + ++ Y K H+
Sbjct: 40 DFFRATSRLTTDFGNAEKTDRF--VMKKLNDRVMRVEYHFLSPYVSPKESPFRHV 92
>d2cnza1 b.2.3.2 (A:22-144) SafA pilus subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 123
Score = 25.3 bits (55), Expect = 6.1
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 206 AGSINKLTGKNSSNTLKNAF 225
G+ ++ GKN+ +
Sbjct: 49 TGTAWRVAGKNTGKEIGVGL 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.416
Gapped
Lambda K H
0.267 0.0488 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,254,913
Number of extensions: 58766
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 18
Length of query: 329
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 243
Effective length of database: 1,226,816
Effective search space: 298116288
Effective search space used: 298116288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.8 bits)