RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7883
(607 letters)
>gnl|CDD|234779 PRK00485, fumC, fumarate hydratase; Reviewed.
Length = 464
Score = 923 bits (2388), Expect = 0.0
Identities = 325/462 (70%), Positives = 376/462 (81%), Gaps = 4/462 (0%)
Query: 6 VRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKG 65
RIEKDS GE+EVP D +GAQT RSL NFPIGGE RMP +I A+ +LKKAAA+VN
Sbjct: 4 TRIEKDSMGEVEVPADALWGAQTQRSLENFPIGGE--RMPRELIRALALLKKAAARVNAE 61
Query: 66 FG-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGG 124
G LD++ AD I AADEVI+GK +DHFPL +WQTGSGTQ+NMNVNEVI+NRA E+LGG
Sbjct: 62 LGLLDAEKADAIVAAADEVIAGKH-DDHFPLDVWQTGSGTQSNMNVNEVIANRASELLGG 120
Query: 125 KLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQN 184
+LGSK PVHPNDHVN QSSNDTFPTAMHIA L I RLL +L+ L D L K++EF +
Sbjct: 121 ELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAIVERLLPALEHLRDTLAAKAEEFAD 180
Query: 185 IIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYV 244
I+KIGRTH QDATPLTLGQEFSGY Q+++GIER++ LP LY+LA+GGTAVGTGLN +
Sbjct: 181 IVKIGRTHLQDATPLTLGQEFSGYAAQLEHGIERIEAALPHLYELALGGTAVGTGLNAHP 240
Query: 245 GFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGS 304
GFAE + ++ELTGLPF +APNKFEALA+HDALVE SGAL T+AVSLMKIANDIR+L S
Sbjct: 241 GFAERVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLAS 300
Query: 305 GPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNV 364
GPR GLGE+ LPENEPGSSIMPGKVNPTQ EALTMV AQVMGN AVT GS G+FELNV
Sbjct: 301 GPRCGLGEISLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNDAAVTFAGSQGNFELNV 360
Query: 365 FKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDK 424
FKP+I N L+SIRLLAD SF CV GI PN + I + + SLMLVTALNPHIGYDK
Sbjct: 361 FKPVIAYNFLQSIRLLADAMRSFADHCVVGIEPNRERIKELLERSLMLVTALNPHIGYDK 420
Query: 425 AAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGP 466
AA+IAK A+K G+TLKEAA++LGYLTE+E+D+WV PEKM GP
Sbjct: 421 AAKIAKKAHKEGLTLKEAALELGYLTEEEFDRWVDPEKMTGP 462
>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases. This subgroup
contains Escherichia coli fumarase C, human
mitochondrial fumarase, and related proteins. It is a
member of the Lyase class I family. Members of this
family for the most part catalyze similar
beta-elimination reactions in which a C-N or C-O bond is
cleaved with the release of fumarate as one of the
products. These proteins are active as tetramers. The
four active sites of the homotetrameric enzyme are each
formed by residues from three different subunits.
Fumarase catalyzes the reversible hydration/dehydration
of fumarate to L-malate during the Krebs cycle.
Length = 455
Score = 911 bits (2357), Expect = 0.0
Identities = 331/458 (72%), Positives = 383/458 (83%), Gaps = 4/458 (0%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
RIEKDS GE+EVP D +GAQT RSL NFPIGGE RMP +I A+G+LKKAAAQ N
Sbjct: 1 RIEKDSMGEVEVPADALWGAQTQRSLENFPIGGE--RMPRELIRALGLLKKAAAQANAEL 58
Query: 67 G-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
G LD + AD I +AADEVI+GKL +DHFPL +WQTGSGTQTNMNVNEVI+NRAIE+LGG
Sbjct: 59 GLLDEEKADAIVQAADEVIAGKL-DDHFPLVVWQTGSGTQTNMNVNEVIANRAIELLGGV 117
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
LGSK PVHPNDHVN QSSNDTFPTAMHIA AL + RLL +L+ L DALD K+ EF++I
Sbjct: 118 LGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAALALQERLLPALKHLIDALDAKADEFKDI 177
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
+KIGRTH QDATPLTLGQEFSGY Q+++ I R++ LPRLY+LA+GGTAVGTGLN + G
Sbjct: 178 VKIGRTHLQDATPLTLGQEFSGYAAQLEHAIARIEAALPRLYELALGGTAVGTGLNAHPG 237
Query: 246 FAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
FAE ++ELTGLPF +APNKFEALA+HDALVE SGAL T+AVSLMKIANDIR+LGSG
Sbjct: 238 FAEKVAAELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLGSG 297
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
PR GLGEL LPENEPGSSIMPGKVNPTQ EALTMVAAQVMGN A+T+ GS+G+FELNVF
Sbjct: 298 PRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNDAAITIAGSSGNFELNVF 357
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
KP+I+ N+L+SIRLLAD SF KCV GI PN + IA+ + SLMLVTALNPHIGYDKA
Sbjct: 358 KPVIIYNLLQSIRLLADACRSFADKCVAGIEPNRERIAELLERSLMLVTALNPHIGYDKA 417
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKM 463
A+IAK A+K G+TLKEAA++LGYLTE+E+D+ V PEKM
Sbjct: 418 AKIAKKAHKEGLTLKEAALELGYLTEEEFDRLVDPEKM 455
>gnl|CDD|223192 COG0114, FumC, Fumarase [Energy production and conversion].
Length = 462
Score = 843 bits (2180), Expect = 0.0
Identities = 312/463 (67%), Positives = 374/463 (80%), Gaps = 4/463 (0%)
Query: 6 VRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKG 65
RIE D+ GE+EVP D +GAQT RSL NFPIGGE +MP II A+G+LKKAAAQVN
Sbjct: 3 YRIEHDTMGEVEVPADALWGAQTQRSLENFPIGGE--KMPREIIRALGLLKKAAAQVNAD 60
Query: 66 FG-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGG 124
G LD + AD I AADEV++GK +DHFPL +WQTGSGTQ+NMNVNEVI+NRA E+LGG
Sbjct: 61 LGLLDPEKADAIIAAADEVLAGKH-DDHFPLDVWQTGSGTQSNMNVNEVIANRASELLGG 119
Query: 125 KLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQN 184
+LGSK PVHPNDHVN QSSNDTFPTAMHIA L + NRL+ +L+ L L K++EF +
Sbjct: 120 ELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAVVNRLIPALKHLIKTLAAKAEEFAD 179
Query: 185 IIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYV 244
++KIGRTH QDATPLTLGQEFSGY Q+++ +ER++ +LP LY+LAIGGTAVGTGLN +
Sbjct: 180 VVKIGRTHLQDATPLTLGQEFSGYAAQLEHALERIEASLPHLYELAIGGTAVGTGLNAHP 239
Query: 245 GFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGS 304
F E + ++ELTGLPF +APNKFEALA+HDALVE SGAL T+AVSLMKIANDIR+LGS
Sbjct: 240 EFGEKVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALRTLAVSLMKIANDIRWLGS 299
Query: 305 GPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNV 364
GPR GLGE++LPENEPGSSIMPGKVNPTQ EALTMVAAQV+GN A+ GS G+FELNV
Sbjct: 300 GPRCGLGEIELPENEPGSSIMPGKVNPTQCEALTMVAAQVIGNDAAIAFAGSQGNFELNV 359
Query: 365 FKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDK 424
FKP+I N L+S+RLLAD SF C+ GI PNE+ I + + SLMLVTALNPHIGYDK
Sbjct: 360 FKPVIAYNFLQSVRLLADAMRSFADHCIVGIEPNEERIKELLERSLMLVTALNPHIGYDK 419
Query: 425 AAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPE 467
AA+IAK A+K G TL+EAA++LG L+E+E+D+ V PEKM+GP
Sbjct: 420 AAKIAKKAHKEGTTLREAALELGLLSEEEFDKLVDPEKMVGPG 462
>gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and
fumarase class II enzymes. This group contains
aspartase (L-aspartate ammonia-lyase), fumarase class II
enzymes, and related proteins. It is a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. Aspartase catalyzes the
reversible deamination of aspartic acid. Fumarase
catalyzes the reversible hydration/dehydration of
fumarate to L-malate during the Krebs cycle.
Length = 450
Score = 840 bits (2174), Expect = 0.0
Identities = 292/454 (64%), Positives = 347/454 (76%), Gaps = 5/454 (1%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
RIEKDS GE+EVP D YYGAQT R+L NFPI GE RMP +I A+ ++KKAAA N
Sbjct: 1 RIEKDSLGEVEVPADAYYGAQTQRALENFPISGE--RMPPELIRALALVKKAAALANAEL 58
Query: 67 G-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
G LD + AD I +A DEVI+GKL +D FPL +WQTGSGT TNMNVNEVI+NRA+E+LGGK
Sbjct: 59 GLLDEEKADAIVQACDEVIAGKL-DDQFPLDVWQTGSGTSTNMNVNEVIANRALELLGGK 117
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
G K PVHPND VN QSSND FP A HIA AL + RLL +L+ L DALD K++EF +I
Sbjct: 118 KG-KYPVHPNDDVNNSQSSNDDFPPAAHIAAALALLERLLPALEQLQDALDAKAEEFADI 176
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
+KIGRTH QDA PLTLGQEFSGY Q+ I R++ L RL +L +GGTAVGTGLN G
Sbjct: 177 VKIGRTHLQDAVPLTLGQEFSGYAAQLARDIARIEAALERLRELNLGGTAVGTGLNAPPG 236
Query: 246 FAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
+AE ++ELTGLPF +APN FEA A+HDALVEVSGAL T+AVSL KIAND+R L SG
Sbjct: 237 YAEKVAAELAELTGLPFVTAPNLFEATAAHDALVEVSGALKTLAVSLSKIANDLRLLSSG 296
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
PR+GLGE+ LP N+PGSSIMPGKVNP EA+ MVAAQV+GN A+T+ GS G ELNVF
Sbjct: 297 PRAGLGEINLPANQPGSSIMPGKVNPVIPEAVNMVAAQVIGNDTAITMAGSAGQLELNVF 356
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
KP+I N+L+SIRLLA+ SF KCV GI NE+ ++V +SLMLVTALNPHIGY+KA
Sbjct: 357 KPVIAYNLLQSIRLLANACRSFRDKCVEGIEANEERCKEYVENSLMLVTALNPHIGYEKA 416
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVK 459
AEIAK A K G TL+EAA++LG LTE+E D+ +
Sbjct: 417 AEIAKEALKEGRTLREAALELGLLTEEELDEILD 450
>gnl|CDD|215069 PLN00134, PLN00134, fumarate hydratase; Provisional.
Length = 458
Score = 822 bits (2124), Expect = 0.0
Identities = 325/459 (70%), Positives = 371/459 (80%), Gaps = 2/459 (0%)
Query: 13 FGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFG-LDSK 71
G ++VP DK +GAQT RSL NF IGGE ERMPE I+ A GI+KKAAA+VN +G LD
Sbjct: 1 MGPIQVPADKLWGAQTQRSLQNFEIGGERERMPEPIVRAFGIVKKAAAKVNMEYGLLDPD 60
Query: 72 IADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDP 131
I I +AADEV GKL +DHFPL +WQTGSGTQTNMN NEVI+NRA E+LGG +G K P
Sbjct: 61 IGKAIMQAADEVAEGKL-DDHFPLVVWQTGSGTQTNMNANEVIANRAAEILGGPVGEKSP 119
Query: 132 VHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRT 191
VHPNDHVN+ QSSNDTFPTAMHIA A EIH+RL+ +L+ LH++L KS EF++I+KIGRT
Sbjct: 120 VHPNDHVNRSQSSNDTFPTAMHIAAATEIHSRLIPALKELHESLRAKSFEFKDIVKIGRT 179
Query: 192 HTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCT 251
H QDA PLTLGQEFSGY TQ+KYG+ RV+ TLPRLY+LA GGTAVGTGLNT GF E
Sbjct: 180 HLQDAVPLTLGQEFSGYATQVKYGLNRVQCTLPRLYELAQGGTAVGTGLNTKKGFDEKIA 239
Query: 252 QRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLG 311
++E TGLPF +APNKFEALA+HDA VE+SGALNTVAVSLMKIANDIR LGSGPR GLG
Sbjct: 240 AAVAEETGLPFVTAPNKFEALAAHDAFVELSGALNTVAVSLMKIANDIRLLGSGPRCGLG 299
Query: 312 ELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVS 371
EL LPENEPGSSIMPGKVNPTQ EALTMV AQVMGNHVA+TVGGS GHFELNVFKPLI
Sbjct: 300 ELNLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGSAGHFELNVFKPLIAY 359
Query: 372 NVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKAAEIAKH 431
N+L SIRLL D + SF CV GI N + I+K +++SLMLVTALNP IGYDKAA +AK
Sbjct: 360 NLLHSIRLLGDASASFRKNCVRGIEANRERISKLLHESLMLVTALNPKIGYDKAAAVAKK 419
Query: 432 AYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPEYHP 470
A+K G TLKEAA+KLG LT +E+D+ V PEKM GP P
Sbjct: 420 AHKEGTTLKEAALKLGVLTAEEFDELVVPEKMTGPSDLP 458
>gnl|CDD|130052 TIGR00979, fumC_II, fumarate hydratase, class II. Putative
fumarases from several species (Mycobacterium
tuberculosis, Streptomyces coelicolor, Pseudomonas
aeruginosa) branch deeply, although within the same
branch of a phylogenetic tree rooted by aspartate
ammonia-lyase sequences, and score between the trusted
and noise cutoffs [Energy metabolism, TCA cycle].
Length = 458
Score = 776 bits (2005), Expect = 0.0
Identities = 316/461 (68%), Positives = 379/461 (82%), Gaps = 4/461 (0%)
Query: 6 VRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKG 65
RIEKDS GE++VP DKY+GAQT RSL NF IG +E+MP +I A ILKKAAA VN+
Sbjct: 1 FRIEKDSMGEIQVPADKYWGAQTQRSLENFKIG--TEKMPLELIHAFAILKKAAAIVNED 58
Query: 66 FG-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGG 124
G LD+K AD I +AADE+++GK +DHFPL +WQTGSGTQ+NMNVNEVI+NRAIE+LGG
Sbjct: 59 LGKLDAKKADAIVQAADEILAGK-LDDHFPLVVWQTGSGTQSNMNVNEVIANRAIELLGG 117
Query: 125 KLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQN 184
KLGSK PVHPNDHVNK QSSNDTFPTAMHIA L I N+L+ +L+ L LD KS+EF +
Sbjct: 118 KLGSKQPVHPNDHVNKSQSSNDTFPTAMHIAAVLAIKNQLIPALENLKKTLDAKSKEFAH 177
Query: 185 IIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYV 244
I+KIGRTH QDATPLTLGQEFSGYV Q+++G+ER+ +LP LY+LAIGGTAVGTGLNT+
Sbjct: 178 IVKIGRTHLQDATPLTLGQEFSGYVAQLEHGLERIAYSLPHLYELAIGGTAVGTGLNTHP 237
Query: 245 GFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGS 304
GF E + I++ TGLPF +APNKFEALA+HDA+VE GAL T+A SLMKIANDIR+LGS
Sbjct: 238 GFDEKVAEEIAKETGLPFVTAPNKFEALAAHDAIVEAHGALKTLAASLMKIANDIRWLGS 297
Query: 305 GPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNV 364
GPR GLGEL +PENEPGSSIMPGKVNPTQ EALTMV QVMGN + GS G+FELNV
Sbjct: 298 GPRCGLGELFIPENEPGSSIMPGKVNPTQCEALTMVCVQVMGNDATIGFAGSQGNFELNV 357
Query: 365 FKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDK 424
FKP+I+ N L+S+RLL+D ESF CV GI PN++ I + +N+SLMLVTALNPHIGYD
Sbjct: 358 FKPVIIYNFLQSVRLLSDAMESFRDHCVVGIEPNKERIQQLLNNSLMLVTALNPHIGYDN 417
Query: 425 AAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLG 465
AA+IAK A+K GITLKEAA++LG L+E+E+D+WV PE+M+G
Sbjct: 418 AAKIAKKAHKEGITLKEAALELGLLSEEEFDEWVVPEQMVG 458
>gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional.
Length = 464
Score = 620 bits (1600), Expect = 0.0
Identities = 272/464 (58%), Positives = 339/464 (73%), Gaps = 4/464 (0%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
R E DS G +EVP D Y+GAQT RSLINF IG E RMP A++ A+ ++KKAAA+VN
Sbjct: 3 RTETDSLGPIEVPEDAYWGAQTQRSLINFAIGKE--RMPLAVLHALALIKKAAARVNDRN 60
Query: 67 G-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
G L + IA I +AADEV+ G+ ++D FPL +WQTGSGTQ+NMNVNEVI+ RA E+ G
Sbjct: 61 GDLPADIARLIEQAADEVLDGQ-HDDQFPLVVWQTGSGTQSNMNVNEVIAGRANELAGNG 119
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
G K PVHPNDHVN+ QSSND FPTAMHIA A +H +LL ++ L L ++S +
Sbjct: 120 RGGKSPVHPNDHVNRSQSSNDCFPTAMHIAAAQAVHEQLLPAIAELSGGLAEQSARHAKL 179
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
+K GRTH DATP+T GQE S +V Q+ Y ++ LP + +LA GGTAVGTGLN G
Sbjct: 180 VKTGRTHMMDATPITFGQELSAFVAQLDYAERAIRAALPAVCELAQGGTAVGTGLNAPHG 239
Query: 246 FAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
FAE ++ L+GLPF +APNKF ALA H+ LV +SGAL T+AV+LMKIAND+R LGSG
Sbjct: 240 FAEAIAAELAALSGLPFVTAPNKFAALAGHEPLVSLSGALKTLAVALMKIANDLRLLGSG 299
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
PR+GL E++LP NEPGSSIMPGKVNPTQ EAL+M+A QVMGN + S GH +LNVF
Sbjct: 300 PRAGLAEVRLPANEPGSSIMPGKVNPTQCEALSMLACQVMGNDATIGFAASQGHLQLNVF 359
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
KP+I+ N+L+SIRLLAD +F CV G+ P+ + +A H+ LMLVTALNPHIGYDKA
Sbjct: 360 KPVIIHNLLQSIRLLADGCRNFQQHCVAGLEPDAEQMAAHLERGLMLVTALNPHIGYDKA 419
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPEYH 469
AEIAK AY G TL+EAA+ LGYLT++++D WV+PE ML H
Sbjct: 420 AEIAKKAYAEGTTLREAALALGYLTDEQFDAWVRPENMLEAGGH 463
>gnl|CDD|237031 PRK12273, aspA, aspartate ammonia-lyase; Provisional.
Length = 472
Score = 609 bits (1574), Expect = 0.0
Identities = 219/463 (47%), Positives = 298/463 (64%), Gaps = 3/463 (0%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
RIEKD GE EVP D YYG T+R++ NFPI G +I A+ ++KKAAA NK
Sbjct: 6 RIEKDLLGEREVPADAYYGIHTLRAVENFPISGVKISDYPELIRALAMVKKAAALANKEL 65
Query: 67 G-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
G LD + AD I A DE+++GKL+ D F + + Q G+GT TNMN NEVI+NRA+E+LG +
Sbjct: 66 GLLDEEKADAIVAACDEILAGKLH-DQFVVDVIQGGAGTSTNMNANEVIANRALELLGHE 124
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
G VHPNDHVN QS+ND +PTA+ IA+ L +LL +L+ L +A + K++EF +I
Sbjct: 125 KGEYQYVHPNDHVNMSQSTNDAYPTAIRIAL-LLSLRKLLDALEQLQEAFEAKAKEFADI 183
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
+K+GRT QDA P+TLGQEF Y + +R+ L ++ +G TA+GTGLN G
Sbjct: 184 LKMGRTQLQDAVPMTLGQEFGAYAVALAEDRKRLYRAAELLREVNLGATAIGTGLNAPPG 243
Query: 246 FAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
+ E ++++E+TGLP A + EA A VEVSGAL +AV L KI ND+R L SG
Sbjct: 244 YIELVVEKLAEITGLPLVPAEDLIEATQDTGAFVEVSGALKRLAVKLSKICNDLRLLSSG 303
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
PR+GL E+ LP + GSSIMPGKVNP E + V QV+GN VT+ G ELNV
Sbjct: 304 PRAGLNEINLPAVQAGSSIMPGKVNPVIPEVVNQVCFQVIGNDTTVTMAAEAGQLELNVM 363
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
+P+I N+ SI +L + + KC+ GI NE+ ++V +S+ +VTALNP+IGY+ A
Sbjct: 364 EPVIAYNLFESISILTNACRTLREKCIDGITANEERCREYVENSIGIVTALNPYIGYENA 423
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPEY 468
AEIAK A +TG +++E ++ G LTE+E D + PE M P Y
Sbjct: 424 AEIAKEALETGKSVRELVLERGLLTEEELDDILSPENMTHPGY 466
>gnl|CDD|176462 cd01357, Aspartase, Aspartase. This subgroup contains Escherichia
coli aspartase (L-aspartate ammonia-lyase), Bacillus
aspartase and related proteins. It is a member of the
Lyase class I family, which includes both aspartase
(L-aspartate ammonia-lyase) and fumarase class II
enzymes. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. Aspartase catalyzes the reversible deamination
of aspartic acid.
Length = 450
Score = 594 bits (1534), Expect = 0.0
Identities = 221/451 (49%), Positives = 304/451 (67%), Gaps = 5/451 (1%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
RIE D GE EVP D YYG QT+R+L NFPI G ++ +I A+ ++KKAAA N
Sbjct: 1 RIEHDLLGEREVPADAYYGIQTLRALENFPISGL--KIHPELIRALAMVKKAAALANAEL 58
Query: 67 G-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
G LD + A+ I KA DE+I+GK D F + + Q G+GT TNMN NEVI+NRA+E+LG +
Sbjct: 59 GLLDEEKAEAIVKACDEIIAGK-LHDQFVVDVIQGGAGTSTNMNANEVIANRALELLGHE 117
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
G VHPNDHVN QS+ND +PTA+ +A + + +LL +L L +A K++EF ++
Sbjct: 118 KGEYQYVHPNDHVNMSQSTNDVYPTALRLA-LILLLRKLLDALAALQEAFQAKAREFADV 176
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
+K+GRT QDA P+TLGQEF Y T +K R+ RL ++ +GGTA+GTG+N G
Sbjct: 177 LKMGRTQLQDAVPMTLGQEFGAYATALKRDRARIYKARERLREVNLGGTAIGTGINAPPG 236
Query: 246 FAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
+ E +++SE+TGLP K A N +A + DA VEVSGAL +AV L KIAND+R L SG
Sbjct: 237 YIELVVEKLSEITGLPLKRAENLIDATQNTDAFVEVSGALKRLAVKLSKIANDLRLLSSG 296
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
PR+GLGE+ LP +PGSSIMPGKVNP E + VA QV+GN + +T+ G ELNVF
Sbjct: 297 PRAGLGEINLPAVQPGSSIMPGKVNPVIPEVVNQVAFQVIGNDLTITMAAEAGQLELNVF 356
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
+P+I N+L SI +L + + +C+ GI NE+ ++V +S+ +VTALNP+IGY+ A
Sbjct: 357 EPVIAYNLLESIDILTNAVRTLRERCIDGITANEERCREYVENSIGIVTALNPYIGYEAA 416
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQEYDQ 456
AEIAK A +TG +++E ++ G LTE+E D+
Sbjct: 417 AEIAKEALETGRSVRELVLEEGLLTEEELDE 447
>gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional.
Length = 473
Score = 578 bits (1491), Expect = 0.0
Identities = 221/468 (47%), Positives = 300/468 (64%), Gaps = 5/468 (1%)
Query: 2 GKDGVRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQ 61
+RIE D GE EVP + YYG QT+R++ NFPI G ++ +I A +KKAAA
Sbjct: 1 TNKNMRIEHDLLGEKEVPAEAYYGIQTLRAVENFPITGY--KIHPELIRAFAQVKKAAAL 58
Query: 62 VNKGFG-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIE 120
N G L +IA+ I +A DE+++GKL D F + Q G+GT TNMN NEVI+NRA+E
Sbjct: 59 ANADLGLLPRRIAEAIVQACDEILAGKL-HDQFIVDPIQGGAGTSTNMNANEVIANRALE 117
Query: 121 MLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQ 180
+LGG+ G V PNDHVN QS+ND FPTA+ IA + LL ++ L D ++K+
Sbjct: 118 LLGGEKGDYHYVSPNDHVNMAQSTNDVFPTAIRIAALNLLE-GLLAAMGALQDVFEEKAA 176
Query: 181 EFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGL 240
EF ++IK+GRT QDA P+TLGQEFS Y +K +R++ LY++ +GGTAVGTGL
Sbjct: 177 EFDHVIKMGRTQLQDAVPITLGQEFSAYARALKRDRKRIQQAREHLYEVNLGGTAVGTGL 236
Query: 241 NTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIR 300
N + E + ++ +TGLP A + +A + DA VEVSGAL AV+L KIAND+R
Sbjct: 237 NADPEYIERVVKHLAAITGLPLVGAEDLVDATQNTDAFVEVSGALKVCAVNLSKIANDLR 296
Query: 301 FLGSGPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHF 360
L SGPR+GLGE+ LP +PGSSIMPGKVNP E + +A QV+GN V +T+ G
Sbjct: 297 LLSSGPRTGLGEINLPAVQPGSSIMPGKVNPVMPEVVNQIAFQVIGNDVTITLAAEAGQL 356
Query: 361 ELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHI 420
ELNV +P+I N+L SI +L + +FT CV GI NE+ ++V S+ + TALNPHI
Sbjct: 357 ELNVMEPVIAFNLLESISILTNACRAFTDNCVKGIEANEERCKEYVEKSVGIATALNPHI 416
Query: 421 GYDKAAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPEY 468
GY+ AA IAK A TG +++E A++ G L+E+E D + P +M P
Sbjct: 417 GYEAAARIAKEAIATGRSVRELALENGLLSEEELDLILDPFRMTHPGI 464
>gnl|CDD|223958 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and
metabolism].
Length = 471
Score = 548 bits (1415), Expect = 0.0
Identities = 211/463 (45%), Positives = 297/463 (64%), Gaps = 3/463 (0%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
RIE+D GE E+P + YYG T+R++ NFPI G I AM ++KKAAA NK
Sbjct: 5 RIERDLLGEREIPAEVYYGIHTLRAVENFPISGLKISDVPEFIRAMAMVKKAAALANKEL 64
Query: 67 G-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
G L +IAD I KA DE++ GK + D F + ++Q G+GT TNMN NEVI+NRA+E+LG +
Sbjct: 65 GALPKEIADAIVKACDEILDGKCH-DQFVVDVYQGGAGTSTNMNANEVIANRALELLGHE 123
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
G +HPNDHVN QS+ND +PTA IAV + +L+ +L+ L +A ++K++EF +I
Sbjct: 124 KGEYQYLHPNDHVNMSQSTNDAYPTAFRIAV-YKSLRKLIDALEDLIEAFERKAKEFADI 182
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
+K+GRT QDA P+TLGQEF + +K I+R+ L ++ +GGTA+GTG+N G
Sbjct: 183 LKMGRTQLQDAVPMTLGQEFGAFAVALKEDIKRIYRAAELLLEVNLGGTAIGTGINAPKG 242
Query: 246 FAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
+ E ++++E+TGLP A N EA A V VSGAL +AV L KI ND+R L SG
Sbjct: 243 YIELVVKKLAEVTGLPLVPAENLIEATQDTGAFVMVSGALKRLAVKLSKICNDLRLLSSG 302
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
PR+GL E+ LP + GSSIMPGKVNP E + V +V+GN +T+ G +LNV
Sbjct: 303 PRAGLNEINLPAVQAGSSIMPGKVNPVIPEVVNQVCFKVIGNDTTITMAAEAGQLQLNVM 362
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
+P+I + SI +L + + KC+ GI NE+ ++V +S+ +VTALNP+IGY+ A
Sbjct: 363 EPVIAYALFESISILTNACRNLREKCIDGITANEERCEEYVENSIGIVTALNPYIGYENA 422
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPEY 468
A IAK A +TG +++E ++ G LTE+E D + PE M P Y
Sbjct: 423 AIIAKEALETGKSVREVVLERGLLTEEELDDILSPENMTKPGY 465
>gnl|CDD|213564 TIGR00839, aspA, aspartate ammonia-lyase. This enzyme, aspartate
ammonia-lyase, shows local homology to a number of other
lyases, as modeled by Pfam model pfam00206. Fumarate
hydratase scores as high as 570 bits against this model
[Energy metabolism, Amino acids and amines].
Length = 468
Score = 468 bits (1205), Expect = e-161
Identities = 189/463 (40%), Positives = 277/463 (59%), Gaps = 2/463 (0%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
RIE+D GE EVP D YYG T+R+ NF I + M ++KKAAA NK
Sbjct: 1 RIEEDLLGEREVPADAYYGIHTLRASENFYISNNKISDIPEFVRGMVMVKKAAALANKEL 60
Query: 67 G-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
G + IA+ I A DE+++ D FP+ ++Q G+GT NMN NEVI+N A+E++G +
Sbjct: 61 GTIPESIANAIVAACDEILNNGKCHDQFPVDVYQGGAGTSVNMNTNEVIANLALELMGHQ 120
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
G ++PNDHVNK QS+ND +PT IAV +L+ ++ L D ++K++EF +I
Sbjct: 121 KGEYQYLNPNDHVNKSQSTNDAYPTGFRIAV-YSSLIKLVDAINQLRDGFEQKAKEFADI 179
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
+K+GRT QDA P+TLGQEF + ++ ++ +K T L ++ +G TA+GTGLNT
Sbjct: 180 LKMGRTQLQDAVPMTLGQEFEAFSILLEEEVKNIKRTAELLLEVNLGATAIGTGLNTPPE 239
Query: 246 FAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
++ ++++E+TGLP A N EA + A V V GAL +AV + KI ND+R L SG
Sbjct: 240 YSPLVVKKLAEVTGLPCVPAENLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSG 299
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
PR+GL E+ LPE + GSSIMP KVNP E + V +V+GN VT+ G +LNV
Sbjct: 300 PRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTLAAEAGQLQLNVM 359
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
+P+I + SI +L + + T KCV GI N++ +V +S+ +VT LNP IG+
Sbjct: 360 EPVIGQAMFESIHILTNACYNLTDKCVNGITANKEICEGYVFNSIGIVTYLNPFIGHHNG 419
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPEY 468
+ K +TG +++E ++ G LTE+E D E ++ P Y
Sbjct: 420 DIVGKICAETGKSVREVVLEKGLLTEEELDDIFSVENLMHPAY 462
>gnl|CDD|237743 PRK14515, PRK14515, aspartate ammonia-lyase; Provisional.
Length = 479
Score = 430 bits (1106), Expect = e-146
Identities = 204/467 (43%), Positives = 298/467 (63%), Gaps = 5/467 (1%)
Query: 1 MGKDGVRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAA 60
K+GVRIEKD GE EVPN YYG QT+R++ NFPI G ++ E +I A I+KKAAA
Sbjct: 6 EVKNGVRIEKDFLGEKEVPNYAYYGVQTMRAVENFPITGY--KIHEGLIKAFAIVKKAAA 63
Query: 61 QVNKGFG-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAI 119
N G L+ I++AA E++ GK + DHF + Q G+GT NMN NEVI+NRA+
Sbjct: 64 LANTDVGRLELNKGGAIAEAAQEILDGK-WHDHFIVDPIQGGAGTSMNMNANEVIANRAL 122
Query: 120 EMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKS 179
E+LG + G + PN HVN QS+ND FPTA+HIA L LL ++ +HD + K+
Sbjct: 123 ELLGMEKGDYHYISPNSHVNMAQSTNDAFPTAIHIA-TLNALEGLLQTMGYMHDVFELKA 181
Query: 180 QEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTG 239
++F ++IK+GRTH QDA P+ LGQEF Y ++ ++R++ + LY++ +G TAVGTG
Sbjct: 182 EQFDHVIKMGRTHLQDAVPIRLGQEFKAYSRVLERDMKRIQQSRQHLYEVNMGATAVGTG 241
Query: 240 LNTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDI 299
LN + E + ++ ++ LP A + +A + DA EVS AL +++ KIAND+
Sbjct: 242 LNADPEYIEAVVKHLAAISELPLVGAEDLVDATQNTDAYTEVSAALKVCMMNMSKIANDL 301
Query: 300 RFLGSGPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGH 359
R + SGPR GL E+ LP +PGSSIMPGKVNP E + +A QV+GN + + G
Sbjct: 302 RLMASGPRVGLAEIMLPARQPGSSIMPGKVNPVMPEVINQIAFQVIGNDHTICLASEAGQ 361
Query: 360 FELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPH 419
ELNV +P++V N+L+SI ++ + +FT C+ GI NED + ++V S+ ++TA+NPH
Sbjct: 362 LELNVMEPVLVFNLLQSISIMNNGFRAFTDNCLKGIEANEDRLKEYVEKSVGIITAVNPH 421
Query: 420 IGYDKAAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGP 466
IGY+ AA +AK A TG +++E VK G L++++ + + P +M P
Sbjct: 422 IGYEAAARVAKEAIATGQSVRELCVKNGVLSQEDLELILDPFEMTHP 468
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase.
Length = 312
Score = 391 bits (1006), Expect = e-133
Identities = 164/334 (49%), Positives = 197/334 (58%), Gaps = 23/334 (6%)
Query: 14 GELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFGLDSKIA 73
G VP D G T RS NF + E I + LKKAAA+ N L + A
Sbjct: 1 GRFTVPADALMGIFTDRSRFNFRLSEED-------IKGLAALKKAAAKANV---LLKEEA 50
Query: 74 DTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVH 133
I KA DEV +D FPL + Q GSGT NMN+NEVI E+LG VH
Sbjct: 51 AAIIKALDEVAEEGKADDAFPLKVIQEGSGTAVNMNLNEVIG----ELLG------QLVH 100
Query: 134 PNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHT 193
PND V+ QSSND PTA+ +A+ L + LL +L L DAL +K++EF +++K GRTH
Sbjct: 101 PNDKVHTGQSSNDQVPTALRLALKLALSEVLLPALGQLIDALKEKAKEFADVVKPGRTHL 160
Query: 194 QDATPLTLGQEFSGYVTQIKYGIERVKDTLPR-LYQLAIGGTAVGTGLNTYVGFAENCTQ 252
QDATP+TLGQE SGY + +ER+K LPR L + GGTAVGTGLN FAE +
Sbjct: 161 QDATPVTLGQELSGYAVALTRDLERLKQLLPRILVEPLGGGTAVGTGLNADPEFAELLAK 220
Query: 253 RISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGE 312
+ TGLP APN FEA + DA+VE SGAL +A L K AND+R L SGP G E
Sbjct: 221 ELGFFTGLPVP-APNSFEATSDRDAVVEFSGALALLATHLSKFANDLRLLSSGP-FGFVE 278
Query: 313 LKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMG 346
L LPE EPGSSIMPGKVNP Q+E L A +V G
Sbjct: 279 LSLPEGEPGSSIMPGKVNPDQLELLRGKAGRVFG 312
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
catalyze similar beta-elimination reactions. The Lyase
class I family contains class II fumarase, aspartase,
adenylosuccinate lyase (ASL), argininosuccinate lyase
(ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
cycloisomerase (pCMLE), and related proteins. It belongs
to the Lyase_I superfamily. Proteins of this family for
the most part catalyze similar beta-elimination
reactions in which a C-N or C-O bond is cleaved with the
release of fumarate as one of the products. These
proteins are active as tetramers. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits.
Length = 325
Score = 360 bits (926), Expect = e-121
Identities = 120/352 (34%), Positives = 172/352 (48%), Gaps = 29/352 (8%)
Query: 49 ISAMGILKKAAAQVNKGFG-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTN 107
I A ++KA A+ G L + A+ I A DE++ G D Q GSGT
Sbjct: 1 IRADLQVEKAHAKALAELGLLPKEAAEAILAALDEILEGIA-ADQV----EQEGSGTHDV 55
Query: 108 MNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCS 167
M V EV++ RA E+ N S++ + + LL +
Sbjct: 56 MAVEEVLAERAGEL-------------NGGYVHTGRSSNDIVDTALRLALRDALDILLPA 102
Query: 168 LQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLY 227
L+ L DAL K++E ++ + GRTH QDA P TLG E + + +++ +ER+++ L RL
Sbjct: 103 LKALIDALAAKAEEHKDTVMPGRTHLQDAQPTTLGHELAAWAAELERDLERLEEALKRLN 162
Query: 228 QLAIGGTAVGTGLNTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNT 287
L +GG AVGTG N E + + F APN +A++ D LVE+ AL
Sbjct: 163 VLPLGGGAVGTGANAPPIDRERVAELLGF-----FGPAPNSTQAVSDRDFLVELLSALAL 217
Query: 288 VAVSLMKIANDIRFLGSGPRSGLGELKLPEN-EPGSSIMPGKVNPTQVEALTMVAAQVMG 346
+AVSL KIAND+R L SG GE++LP+ +PGSSIMP KVNP +E + +A +V+G
Sbjct: 218 LAVSLSKIANDLRLLSSG---EFGEVELPDAKQPGSSIMPQKVNPVILELVRGLAGRVIG 274
Query: 347 NHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPN 398
N A+ G E NV P+ + S LL T G+ N
Sbjct: 275 NLAALLEALKGGPLEDNVDSPVEREALPDSFDLLDAALRLLTGVLE-GLEVN 325
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the
lyase class I family, histidine ammonia-lyase and
phenylalanine ammonia-lyase, which catalyze similar
beta-elimination reactions. Lyase class I_like
superfamily of enzymes that catalyze beta-elimination
reactions and are active as homotetramers. The four
active sites of the homotetrameric enzyme are each
formed by residues from three different subunits. This
superfamily contains the lyase class I family, histidine
ammonia-lyase and phenylalanine ammonia-lyase. The lyase
class I family comprises proteins similar to class II
fumarase, aspartase, adenylosuccinate lyase,
argininosuccinate lyase, and 3-carboxy-cis, cis-muconate
lactonizing enzyme which, for the most part catalyze
similar beta-elimination reactions in which a C-N or C-O
bond is cleaved with the release of fumarate as one of
the products. Histidine or phenylalanine ammonia-lyase
catalyze a beta-elimination of ammonia from histidine
and phenylalanine, respectively.
Length = 231
Score = 210 bits (538), Expect = 2e-64
Identities = 85/281 (30%), Positives = 111/281 (39%), Gaps = 63/281 (22%)
Query: 108 MNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCS 167
V EV++ RA E+ GG GS V+K +SSND T + + LL
Sbjct: 14 ALVEEVLAGRAGELAGGLHGSA-------LVHKGRSSND-IGTTALRLALRDALDDLLPL 65
Query: 168 LQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLY 227
L+ L DAL K++ + + GRTH QDA P+TLG E + + +E RL
Sbjct: 66 LKALIDALALKAEAHKGTVMPGRTHLQDAQPVTLGYELRAWAQVLGRDLE-------RLE 118
Query: 228 QLAIGGTAVGTGLNTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNT 287
+ A+ E AL
Sbjct: 119 EAAV-----------------------------------------------AEALDALAL 131
Query: 288 VAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGN 347
A L KIA D+R L SG LGE LP +PGSSIMP KVNP E + +A V+GN
Sbjct: 132 AAAHLSKIAEDLRLLLSGEFGELGEPFLP-GQPGSSIMPQKVNPVAAELVRGLAGLVIGN 190
Query: 348 HVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFT 388
VAV G N P + + S+ LL D
Sbjct: 191 LVAVLTALKGGPERDNEDSPSMREILADSLLLLIDALRLLL 231
>gnl|CDD|204481 pfam10415, FumaraseC_C, Fumarase C C-terminus. Fumarase C
catalyzes the stereo-specific interconversion of
fumarate to L-malate as part of the Kreb's cycle. The
full-length protein forms a tetramer with visible
globular shape. FumaraseC_C is the C-terminal 65
residues referred to as domain 3. The core of the
molecule consists of a bundle of 20 alpha-helices from
the five-helix bundle of domain 2. The projections from
the core of the tetramer are generated from domains 1
and 3 of each subunit. FumaraseC_C does not appear to be
part of either the active site or the activation site
but is helical in structure forming a little bundle.
Length = 55
Score = 111 bits (281), Expect = 4e-30
Identities = 38/55 (69%), Positives = 45/55 (81%)
Query: 412 LVTALNPHIGYDKAAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGP 466
LVTALNPHIGYDKAA+IAK A KTG TL+E A++LG LTE+E D+ + PE M GP
Sbjct: 1 LVTALNPHIGYDKAAKIAKEALKTGRTLREVALELGLLTEEELDEILDPENMTGP 55
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase
(ASL)_like. This group contains ASL, prokaryotic-type
3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and
related proteins. These proteins are members of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). pCMLE catalyzes the
cyclization of 3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone, in the beta-ketoadipate
pathway. ASL deficiency has been linked to several
pathologies including psychomotor retardation with
autistic features, epilepsy and muscle wasting.
Length = 381
Score = 115 bits (291), Expect = 5e-28
Identities = 88/308 (28%), Positives = 141/308 (45%), Gaps = 36/308 (11%)
Query: 145 NDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQE 204
NDT A+ + AL+I +L L L DAL K + E ++ +GRTH Q A P T G++
Sbjct: 93 NDT-ALALQLRDALDI---ILPDLDALIDALAKLALEHKDTPMLGRTHGQHALPTTFGKK 148
Query: 205 FSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLPFKS 264
F+ + ++ +ER+++ R+ I G AVGT + +R++E GL
Sbjct: 149 FAVWAAELLRHLERLEEARERVLVGGISG-AVGTHASLGPK-GPEVEERVAEKLGLKVPP 206
Query: 265 APNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLP--ENEPGS 322
+ E D + E+ AL +A +L KIA DIR L R+ +GE++ P + + GS
Sbjct: 207 ITTQIE---PRDRIAELLSALALIAGTLEKIATDIRLLQ---RTEIGEVEEPFEKGQVGS 260
Query: 323 SIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF---KPLIVSNVLRSI-- 377
S MP K NP E + +A V E V + L S+V R+I
Sbjct: 261 STMPHKRNPIDSENIEGLARLVRALAAPA--------LENLVQWHERDLSDSSVERNILP 312
Query: 378 --RLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLV------TALNPH-IGYDKAAEI 428
LL D S + G++ N + + ++++ + L+ AL +G +A E+
Sbjct: 313 DAFLLLDAALSRLQGLLEGLVVNPERMRRNLDLTWGLILSEAVMMALAKKGLGRQEAYEL 372
Query: 429 AKHAYKTG 436
K G
Sbjct: 373 VKEENYLG 380
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and
metabolism].
Length = 438
Score = 110 bits (277), Expect = 8e-26
Identities = 87/338 (25%), Positives = 151/338 (44%), Gaps = 53/338 (15%)
Query: 157 ALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGI 216
AL++ +L L+ L +AL + + E ++ +GRTH Q A P T G++F+ ++ ++ +
Sbjct: 113 ALDL---ILPDLKRLIEALAELALEHKDTPMLGRTHGQPAEPTTFGKKFANWLAELLRHL 169
Query: 217 ERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLPFKSAPNKFEALASHD 276
ER+++ R+ IGG AVGT +R++E GL + D
Sbjct: 170 ERLEEAEERIIVGKIGG-AVGTLAA-LGDLGAEVEERVAEKLGLKPAPISTQVS---PRD 224
Query: 277 ALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLP--ENEPGSSIMPGKVNPTQV 334
+ E AL +A SL K A DIR L R+ +GE++ P + + GSS MP K NP
Sbjct: 225 RIAEFFSALALLAGSLEKFARDIRLLQ---RTEVGEVEEPFAKGQVGSSAMPHKRNPIDS 281
Query: 335 EALT----MVAAQVMGNHVAVTV----GGSNGHFELNVFKPLIVSNVLRSI----RLLAD 382
E +T + A V + + ++ S+V R I + AD
Sbjct: 282 ENVTGLARVARALVSTLLENLVLWHERDLTD-------------SSVERVILPDAFIAAD 328
Query: 383 TTESFTTKCVTGILPNEDTIAKHVNDSLMLV------TALNPH-IGYDKAAEI----AKH 431
+ + G+ N + + ++++ +L L+ AL +G ++A E+ A
Sbjct: 329 GALNRLLNVLEGLEVNPERMRRNLDLTLGLIASERVMLALRKKGMGREEAHELVREKAMK 388
Query: 432 AYKTGITLKEAAVK----LGYLTEQEYDQWVKPEKMLG 465
A++ G E + YL+E+E + + P LG
Sbjct: 389 AWEQGKEFLELLLADERVTKYLSEEELLELLDPANYLG 426
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate
cycloisomerase (CMLE)_like. This subgroup contains
pCLME and related proteins, and belongs to the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. CMLE catalyzes the cyclization of
3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone in the beta-ketoadipate pathway.
This pathway is responsible for the catabolism of a
variety of aromatic compounds into intermediates of the
citric cycle in prokaryotic and eukaryotic
micro-organisms.
Length = 437
Score = 106 bits (267), Expect = 1e-24
Identities = 86/330 (26%), Positives = 139/330 (42%), Gaps = 58/330 (17%)
Query: 168 LQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLY 227
L L DAL + + ++ +GRTH Q A P+T G + + +++++ ER+ + PR+
Sbjct: 122 LDALLDALARLAATHRDTPMVGRTHLQHALPITFGLKVAVWLSELLRHRERLDELRPRVL 181
Query: 228 QLAIGGTAVGT-------GLNTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVE 280
+ GG A GT GL A EL GL + P + D + E
Sbjct: 182 VVQFGG-AAGTLASLGDQGLAVQEALAA-------EL-GLGVPAIP----WHTARDRIAE 228
Query: 281 VSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLP--ENEPGSSIMPGKVNPTQVEALT 338
++ L + +L KIA D+ L ++ +GE+ P + GSS MP K NP E +
Sbjct: 229 LASFLALLTGTLGKIARDVYLLM---QTEIGEVAEPFAKGRGGSSTMPHKRNPVGCELIV 285
Query: 339 MVAAQVMGNHVAVTV---------GGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTT 389
+A +V G A+ + H E L I LLA
Sbjct: 286 ALARRVPG-LAALLLDAMVQEHERDAGAWHAEWIA---------LPEIFLLASGALEQAE 335
Query: 390 KCVTGILPNEDTIAKHVNDS--LML----VTALNPHIGYDKA----AEIAKHAYKTGITL 439
++G+ NED + +++ + L+L + AL P +G +A E A + G L
Sbjct: 336 FLLSGLEVNEDRMRANLDLTGGLILSEAVMMALAPKLGRQEAHDLVYEACMRAVEEGRPL 395
Query: 440 KEA----AVKLGYLTEQEYDQWVKPEKMLG 465
+E YL+++E D + P LG
Sbjct: 396 REVLLEDPEVAAYLSDEELDALLDPANYLG 425
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase. This family consists of
adenylosuccinate lyase, the enzyme that catalyzes step 8
in the purine biosynthesis pathway for de novo synthesis
of IMP and also the final reaction in the two-step
sequence from IMP to AMP [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 435
Score = 95.9 bits (239), Expect = 5e-21
Identities = 96/356 (26%), Positives = 153/356 (42%), Gaps = 46/356 (12%)
Query: 137 HVNKCQSSNDTFPTA--MHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQ 194
++ +SND TA + + ALEI +L L+ L D L + E+++ + +GRTH Q
Sbjct: 90 FIHFGATSNDIVDTALALLLRDALEI---ILPKLKQLIDRLKDLAVEYKDTVMLGRTHGQ 146
Query: 195 DATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGT------AVGTGLNTYVGFAE 248
A P TLG++F+ + + +K L RL Q AVGT Y E
Sbjct: 147 HAEPTTLGKKFALW-------ADEMKRQLERLLQAKERIKVGGISGAVGTHAAAYPLVEE 199
Query: 249 NCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRS 308
+R++E GL K P + D E+ AL +A +L K A DIR L R+
Sbjct: 200 -VEERVTEFLGL--KPVPISTQIE-PRDRHAELLDALALLATTLEKFAVDIRLL---QRT 252
Query: 309 GLGELKLP--ENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGH-FELNVF 365
E++ P + + GSS MP K NP E + +A + V + E ++
Sbjct: 253 EHFEVEEPFGKGQVGSSAMPHKRNPIDFENVCGLA--RVIRSVLSPALENVPLWHERDLT 310
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHI----- 420
+ +L +LAD T K V ++ N + I +++ +L L+ + I
Sbjct: 311 DSSVERIILPDSFILADIMLKTTLKVVKKLVVNPENILRNLELTLGLIASERVLIALVER 370
Query: 421 --GYDKAAEIAK-HAYK----TGITLKEAAVKLG----YLTEQEYDQWVKPEKMLG 465
G ++A EI + A L E + YL E+E + + PE +G
Sbjct: 371 GMGREEAYEIVRELAMGAAEVDEPDLLEFLLADERITKYLKEEELAELLDPETYIG 426
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed.
Length = 449
Score = 80.4 bits (199), Expect = 5e-16
Identities = 99/352 (28%), Positives = 159/352 (45%), Gaps = 53/352 (15%)
Query: 144 SNDTFPTA--MHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTL 201
SND TA + + +LEI L L+ L L KK++E +N + IGRTH Q A P T
Sbjct: 103 SNDIIDTATALQLKDSLEI---LEEKLKKLRGVLLKKAEEHKNTVCIGRTHGQHAVPTTY 159
Query: 202 GQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAEN---CTQRISELT 258
G F+ + ++I+ +ER++ PR+ + G AVG T F E +R+ E+
Sbjct: 160 GMRFAIWASEIQRHLERLEQLKPRVCVGQMTG-AVG----TQAAFGEKGIEIQKRVMEIL 214
Query: 259 GLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLP-- 316
GL N+ + D E L +A +L KI +IR L R+ +GE++
Sbjct: 215 GLKPVLISNQ---VIQRDRHAEFMMFLANIATTLDKIGLEIRNL---QRTEIGEVEEEFG 268
Query: 317 ENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF---KPLIVSNV 373
+ + GSS MP K NP E + +A V N N + L S+
Sbjct: 269 KKQVGSSTMPHKRNPITSEQICGLARVVRSNVEPA--------LLNNPLWDERDLTNSSC 320
Query: 374 LRSI----RLLADTTESFTTKCVTGILPNEDTIAKHVN--------DSLMLVTALNPHIG 421
R I +L D K + G+ N + I +++ +++M+ A +G
Sbjct: 321 ERIIFPESCVLTDHILKLMIKVLEGLRFNPENIRRNLELTKGLIMAEAVMIELA-KRGMG 379
Query: 422 YDKAAEI----AKHAYKTGITLKEAAVK----LGYLTEQEYDQWVKPEKMLG 465
+A E+ A A++ G LKE ++ + YLTE+E ++ + PE +G
Sbjct: 380 RQEAHELVRQAAMKAHEEGRHLKEVLLEDEEVMKYLTEEELEELLDPETYIG 431
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase
(ASL)_subgroup 1. This subgroup contains bacterial and
archeal proteins similar to ASL, a member of the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASL catalyzes two steps in the de novo purine
biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 387
Score = 79.1 bits (196), Expect = 9e-16
Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 18/202 (8%)
Query: 144 SNDTFPTA--MHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTL 201
S+D TA + + AL+I +L L+ L + L KK+ E ++ + +GRTH A P T
Sbjct: 91 SSDVVDTALALQLREALDI---ILKDLKELLEVLKKKALEHKDTVMVGRTHGIHAEPTTF 147
Query: 202 GQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLP 261
G +F+ + + K +ER+K+ R+ I G AVGT N +G +R++E GL
Sbjct: 148 GLKFALWYAEFKRHLERLKEARERILVGKISG-AVGTYAN--LGP--EVEERVAEKLGLK 202
Query: 262 FKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLP--ENE 319
+ + + D E L +A +L KIA +IR L R+ + E++ P + +
Sbjct: 203 PEPISTQ---VIQRDRHAEYLSTLALIASTLEKIATEIRHL---QRTEVLEVEEPFSKGQ 256
Query: 320 PGSSIMPGKVNPTQVEALTMVA 341
GSS MP K NP E + +A
Sbjct: 257 KGSSAMPHKRNPILSENICGLA 278
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase. This model describes
argininosuccinate lyase, but may include examples of
avian delta crystallins, in which argininosuccinate
lyase activity may or may not be present and the
biological role is to provide the optically clear
cellular protein of the eye lens [Amino acid
biosynthesis, Glutamate family].
Length = 455
Score = 78.5 bits (194), Expect = 2e-15
Identities = 71/284 (25%), Positives = 118/284 (41%), Gaps = 45/284 (15%)
Query: 71 KIADTISKAADEVISGKL-----YEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
KI + +++ +E G ED ++ I I+ +G
Sbjct: 55 KIIEGLNELKEEGREGPFILDPDDED------------------IHMAIERELIDRVGED 96
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
LG K +H +S ND T + + + + L +L L DAL + +++
Sbjct: 97 LGGK--LHTG------RSRNDQVATDLRLYLRDHV-LELAEALLDLQDALIELAEKHVET 147
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
+ G TH Q A P+TL Y + ER++D L R+ +G A+ G
Sbjct: 148 LMPGYTHLQRAQPITLAHHLLAYAEMLLRDYERLQDALKRVNVSPLGSGALAG-----TG 202
Query: 246 FAENCTQRISELTGLPFKSA-PNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGS 304
F + + ++EL G F + N +A++ D ++E+ + V L + A D+ +
Sbjct: 203 FPID-REYLAELLG--FDAVTENSLDAVSDRDFILELLFVAALIMVHLSRFAEDLILWST 259
Query: 305 GPRSGLGELKLP-ENEPGSSIMPGKVNPTQVEALTMVAAQVMGN 347
G G ++LP E GSSIMP K NP E + +V GN
Sbjct: 260 GE---FGFVELPDEFSSGSSIMPQKKNPDVAELIRGKTGRVQGN 300
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and
metabolism].
Length = 459
Score = 78.1 bits (193), Expect = 3e-15
Identities = 101/444 (22%), Positives = 168/444 (37%), Gaps = 89/444 (20%)
Query: 53 GILKKAAAQVNKGFGLDSKIADTISKAADEVISGKL-----YEDHFPLSIWQTGSGTQTN 107
GI+ + A KI + + + +E+ +GK ED
Sbjct: 50 GIITEEEAA---------KILEGLEELLEEIRAGKFELDPDDED---------------- 84
Query: 108 MNVNEVISNRAIEMLG---GKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAV---ALEIH 161
V+ I R IE +G GKL + +S ND T + + + LE+
Sbjct: 85 --VHTAIEARLIERIGDVGGKLHTG------------RSRNDQVATDLRLWLRDKLLELL 130
Query: 162 NRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKD 221
L+ LQ AL ++E + G TH Q A P+T Y + IER++D
Sbjct: 131 -ELIRILQ---KALLDLAEEHAETVMPGYTHLQRAQPVTFAHHLLAYAEMLARDIERLRD 186
Query: 222 TLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLPFKSA-PNKFEALASHDALVE 280
L R+ + G G F + +R +EL G F + N +A++ D ++E
Sbjct: 187 ALKRVNVSPL-GAGALAG----TPFPID-RERTAELLG--FDAVTRNSLDAVSDRDFILE 238
Query: 281 VSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPEN-EPGSSIMPGKVNPTQVEALTM 339
A + V L ++A D+ S G ++LP+ GSSIMP K NP +E +
Sbjct: 239 FLSAAALIMVHLSRLAEDLILWSSPE---FGFIELPDEFSTGSSIMPQKKNPDVLELIRG 295
Query: 340 VAAQVMGNHVA--VTVGG--SNGHFELNVFKPLI---VSNVLRSIRLLADTTESFTTKCV 392
A +V+G + G + +L K + V + S+R+LA V
Sbjct: 296 KAGRVIGALTGLLTIMKGLPLAYNRDLQEDKEPLFDSVDTLEDSLRVLAG--------MV 347
Query: 393 TGILPNEDTIAKHVNDSLMLVTALNPH-----IGYDKAAEIAKHAYKTGITLKEAAVKLG 447
+G+ N++ + + T L + + + +A EI A + + L
Sbjct: 348 SGLTVNKERMREAAEAGFSTATDLADYLVRKGVPFREAHEIVGEAVRRAEERGKDLADLS 407
Query: 448 YLTEQEYDQWVKPEKM--LGPEYH 469
Q + + L PE
Sbjct: 408 LEELQSISPLIDEDVYEVLTPEES 431
>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional.
Length = 451
Score = 75.7 bits (186), Expect = 2e-14
Identities = 85/340 (25%), Positives = 158/340 (46%), Gaps = 28/340 (8%)
Query: 143 SSNDTFPTAMHIAVALEIHNR---LLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPL 199
+SND TA AL+IH+ + ++ L + L K E+++ +GRTH Q A+P+
Sbjct: 101 TSNDINDTA----TALQIHDFVSIIKDDIKNLMETLIKLIDEYKDSPMMGRTHGQHASPI 156
Query: 200 TLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG-FAENCTQRISELT 258
T G +F+ Y+ ++ ++R+ + R + + G VGTG +G A + R+ E+
Sbjct: 157 TFGLKFAVYLDEMSRHLDRLTEMGDRAFAGKVLG-PVGTG--AALGKDALDIQNRVMEIL 213
Query: 259 GLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPEN 318
G+ + + + + D +E +N ++V+L KIA +IR L + E E+
Sbjct: 214 GIYSEIGSTQ---IVNRDRYIEYLSVINGISVTLEKIATEIRNLQRPEIDEVSEYFDEES 270
Query: 319 EPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIR 378
+ GSS MP KVNP E + ++ + + G H E ++ + +
Sbjct: 271 QVGSSSMPSKVNPINSENVVSLSRFIRSLIIPEYEAGVTWH-ERDLTNSALERFTIPYAS 329
Query: 379 LLADTTESFTTKCVTGILPNEDTIAKHV--NDSLM---LVTALNPH-IGYDKAAEI---- 428
+L D ++ ++ ED I +++ +DS+M +V AL + A E
Sbjct: 330 ILIDYVLYNMNDVLSHLIIKEDEIRRNLESDDSIMSESIVRALTLSGMPRQDAHEFVRRA 389
Query: 429 AKHAYKTGITLKEAAVKLG---YLTEQEYDQWVKPEKMLG 465
+ A G +LK + ++ G Y+ E+ D+ + P +G
Sbjct: 390 SMEARSNGKSLKSSLIEAGILKYIDEKTLDRAMDPANFIG 429
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase
(argininosuccinase, ASAL). This group contains ASAL and
related proteins. It is a member of the Lyase class I
family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASAL is a cytosolic enzyme which catalyzes the
reversible breakdown of argininosuccinate to arginine
and fumarate during arginine biosynthesis. In ureotelic
species ASAL also catalyzes a reaction involved in the
production of urea. Included in this group are the major
soluble avian eye lens proteins from duck, delta 1 and
delta 2 crystallin. Of these two isoforms only delta 2
has retained ASAL activity. These crystallins may have
evolved by, gene recruitment of ASAL followed by gene
duplication. In humans, mutations in ASAL result in the
autosomal recessive disorder argininosuccinic aciduria.
Length = 435
Score = 71.8 bits (177), Expect = 2e-13
Identities = 99/463 (21%), Positives = 167/463 (36%), Gaps = 118/463 (25%)
Query: 53 GILKKAAAQVNKGFGLDSKIADTISKAADEVISGKL-----YEDHFPLSIWQTGSGTQTN 107
GIL + A KI ++K E+ +G ED
Sbjct: 27 GILTEEEAA---------KILAGLAKIRAEIEAGAFELDPEDED---------------- 61
Query: 108 MNVNEVISNRAIEMLG---GKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAV---ALEIH 161
++ I R IE +G GKL H + S ND T + + + LE+
Sbjct: 62 --IHMAIERRLIERIGDVGGKL----------HTGR--SRNDQVATDLRLYLRDALLELL 107
Query: 162 NRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKD 221
LL L AL +++E + I G TH Q A P+T G Y ++ +ER+ D
Sbjct: 108 ELLL----DLQRALLDRAEEHADTIMPGYTHLQRAQPITFGHYLLAYAEMLERDLERLAD 163
Query: 222 TLPRLYQLAIGGTA-VGTGLN-------TYVGFAENCTQRISELTGLPFKSAPNKFEALA 273
R+ +G A GT +GF N +A++
Sbjct: 164 AYKRVNVSPLGAGALAGTTFPIDRERTAELLGFDG---------------PTENSLDAVS 208
Query: 274 SHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPEN-EPGSSIMPGKVNPT 332
D ++E A + V L ++A D+ + G ++LP+ GSSIMP K NP
Sbjct: 209 DRDFVLEFLSAAALLMVHLSRLAEDLILWSTQEF---GFVELPDAYSTGSSIMPQKKNPD 265
Query: 333 QVEALTMVAAQVMGNHVAV--TVGG--SNGHFELNVFKPLI---VSNVLRSIRLLADTTE 385
+E + A +V+G + T+ G + +L K + V ++ S+RLL
Sbjct: 266 VLELIRGKAGRVIGALAGLLTTLKGLPLAYNKDLQEDKEPLFDAVDTLIASLRLLTG--- 322
Query: 386 SFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKAAEIAKHAYKTGITLKEA--- 442
++ + N + + + T L A + + G+ +EA
Sbjct: 323 -----VISTLTVNPERMREAAEAGFSTATDL--------ADYLVRE---KGVPFREAHHI 366
Query: 443 ---AVKLG-----YLTEQEYDQWVKPEKMLGPEYHPYFKPDNN 477
AV+L L++ + + + P+N+
Sbjct: 367 VGRAVRLAEEKGKDLSDLTLAELQAISPLFEEDVREALDPENS 409
>gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 452
Score = 65.4 bits (160), Expect = 3e-11
Identities = 56/192 (29%), Positives = 85/192 (44%), Gaps = 13/192 (6%)
Query: 164 LLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTL 223
L L L DAL + + +GRT Q A P+TLG +F+G++ + +R+
Sbjct: 127 LEPDLDRLCDALATLAARHRATPMVGRTWLQQALPVTLGLKFAGWLDALLRHRQRLAALR 186
Query: 224 PRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSG 283
PR L GG A GT L + A Q ++ L + P D + E +
Sbjct: 187 PRALVLQFGG-AAGT-LASLGEQALPVAQALAAELQLALPALPWH----TQRDRIAEFAS 240
Query: 284 ALNTVAVSLMKIANDIRFLGSGPRSGLGELKLP--ENEPGSSIMPGKVNPTQVEALTMVA 341
AL +A +L KIA D+ L ++ +GE+ P + GSS MP K NP V ++
Sbjct: 241 ALGLLAGTLGKIARDVSLL---MQTEVGEVFEPAAAGKGGSSTMPHKRNP--VGCAAVLT 295
Query: 342 AQVMGNHVAVTV 353
A + T+
Sbjct: 296 AATRAPGLVATL 307
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase.
Length = 474
Score = 65.1 bits (159), Expect = 4e-11
Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 27/201 (13%)
Query: 162 NRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKD 221
+ + ++ L AL + +++ +++ G TH Q A P+ L +V Q++ R+ D
Sbjct: 140 DVIRKRIKTLQVALVELAEKNVDLVVPGYTHLQRAQPVLLSHWLLSHVEQLERDAGRLVD 199
Query: 222 TLPRLYQLAIGGTAV-GTGLNT-------YVGFAENCTQRISELTGLPFKSAPNKFEALA 273
PR+ +G A+ GTGL +GF N +A++
Sbjct: 200 CRPRVNFCPLGSCALAGTGLPIDRFMTAKDLGFTAPM---------------RNSIDAVS 244
Query: 274 SHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPEN-EPGSSIMPGKVNPT 332
D ++E A + A+ L ++ + S G + + GSSIMP K NP
Sbjct: 245 DRDFVLEFLFANSITAIHLSRLGEEWVLWASEE---FGFVTPSDAVSTGSSIMPQKKNPD 301
Query: 333 QVEALTMVAAQVMGNHVAVTV 353
+E + +A+V+G+ V V
Sbjct: 302 PMELVRGKSARVIGDLVTVLA 322
>gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate
cycloisomerase. Members of this family are
3-carboxy-cis,cis-muconate cycloisomerase, the enzyme
the catalyzes the second step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. All members of the seed alignment for
this model were chosen from within protocatechuate
degradation operons of at least three genes of the
pathway, from genomes with the complete pathway through
beta-ketoadipate [Energy metabolism, Other].
Length = 338
Score = 63.2 bits (154), Expect = 8e-11
Identities = 65/214 (30%), Positives = 94/214 (43%), Gaps = 19/214 (8%)
Query: 137 HVNKCQSSNDTFPTA--MHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQ 194
+V++ +S D T+ + + AL++ LL L L DAL + ++ GRT Q
Sbjct: 92 YVHRGATSQDVIDTSLMLQLRDALDL---LLADLGRLADALADLAARHRDTPMTGRTLLQ 148
Query: 195 DATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGT--GLNTYVGFAENCTQ 252
A P T G + +G++ + +R+ R L GG A GT L T G A
Sbjct: 149 QAVPTTFGLKAAGWLAAVLRARDRLAALRTRALPLQFGG-AAGTLAALGTR-GGA--VAA 204
Query: 253 RISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGE 312
++ GLP + P D + E AL VA +L KIA DI L ++ +GE
Sbjct: 205 ALAARLGLPLPALPWH----TQRDRIAEFGSALALVAGALGKIAGDIALLS---QTEVGE 257
Query: 313 LKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMG 346
+ GSS MP K NP L A +V G
Sbjct: 258 V-FEAGGGGSSAMPHKRNPVGAALLAAAARRVPG 290
>gnl|CDD|176470 cd01598, PurB, PurB_like adenylosuccinases (adenylsuccinate lyase,
ASL). This subgroup contains EcASL, the product of the
purB gene in Escherichia coli, and related proteins. It
is a member of the Lyase class I family of the Lyase_I
superfamily. Members of the Lyase class I family
function as homotetramers to catalyze similar
beta-elimination reactions in which a Calpha-N or
Calpha-O bond is cleaved with the subsequent release of
fumarate as one of the products. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits. ASL catalyzes two
non-sequential steps in the de novo purine biosynthesis
pathway: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 425
Score = 61.9 bits (151), Expect = 4e-10
Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 22/188 (11%)
Query: 151 AMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVT 210
A+ I A +L L+ + D+L K ++E+ ++ + RTH Q ATP TLG+E + +V
Sbjct: 110 ALMIKEARNEV--ILPLLKEIIDSLKKLAKEYADVPMLSRTHGQPATPTTLGKELAVFVY 167
Query: 211 QIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAE----NCTQRISELTGLPFKSAP 266
+++ +++K G AVG V + + ++ GL +
Sbjct: 168 RLERQYKQLKQI---EILGKFNG-AVGNFNAHLVAYPDVDWRKFSEFFVTSLGLTWNPYT 223
Query: 267 NKFEALASHDALVEVSGAL---NTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGSS 323
+ E HD + E+ AL NT+ L+ + DI S G + K+ + E GSS
Sbjct: 224 TQIE---PHDYIAELFDALARINTI---LIDLCRDIWGYIS---LGYFKQKVKKGEVGSS 274
Query: 324 IMPGKVNP 331
MP KVNP
Sbjct: 275 TMPHKVNP 282
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase
(ASL)_subgroup 2. This subgroup contains mainly
eukaryotic proteins similar to ASL, a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). ASL deficiency has
been linked to several pathologies including psychomotor
retardation with autistic features, epilepsy and muscle
wasting.
Length = 436
Score = 58.5 bits (142), Expect = 4e-09
Identities = 59/258 (22%), Positives = 102/258 (39%), Gaps = 40/258 (15%)
Query: 173 DALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYG---IERVKDTLP-RLYQ 228
D L + + E++++ +G TH Q A T+G+ ++ + +ER++D L R
Sbjct: 124 DRLAEFALEYKDLPTLGFTHYQPAQLTTVGKRACLWIQDLLMDLRNLERLRDDLRFR--- 180
Query: 229 LAIGGTAVGTG---LNTYVGFAENCTQ---RISELTGLPFKSA--------PNKFEALAS 274
+ GT GT L+ + G + +++ G FK K +
Sbjct: 181 -GVKGT-TGTQASFLDLFEGDHDKVEALDELVTKKAG--FKKVYPVTGQTYSRKVD---- 232
Query: 275 HDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLP--ENEPGSSIMPGKVNPT 332
++V AL+++ + KIA DIR L + L E++ P + + GSS MP K NP
Sbjct: 233 ----IDVLNALSSLGATAHKIATDIRLL-----ANLKEVEEPFEKGQIGSSAMPYKRNPM 283
Query: 333 QVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCV 392
+ E +A +M S FE + + L AD
Sbjct: 284 RSERCCSLARHLMNLASNAAQTASTQWFERTLDDSANRRIAIPEAFLAADAILITLQNIS 343
Query: 393 TGILPNEDTIAKHVNDSL 410
G++ I +H+ L
Sbjct: 344 EGLVVYPKVIERHIRQEL 361
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
Length = 459
Score = 58.2 bits (142), Expect = 5e-09
Identities = 72/299 (24%), Positives = 114/299 (38%), Gaps = 81/299 (27%)
Query: 53 GILKKAAAQVNKGFGLDSKIADTISKAADEVISGKL-----YEDHFPLSIWQTGSGTQTN 107
GIL + A+ KI + + +E+ +GK ED
Sbjct: 51 GILSEEEAE---------KILAGLDEILEEIEAGKFEFSPELED---------------- 85
Query: 108 MNVNEVISNRAIEMLG---GKLG---SKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIH 161
++ I R E +G GKL S+ ND V T + + + EI
Sbjct: 86 --IHMAIEARLTERIGDVGGKLHTGRSR-----NDQV----------ATDLRLYLRDEI- 127
Query: 162 NRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKD 221
+ + L L AL ++E + I G TH Q A P+T G Y + +ER++D
Sbjct: 128 DEIAELLLELQKALLDLAEEHADTIMPGYTHLQRAQPVTFGHHLLAYAEMLARDLERLRD 187
Query: 222 TLPRLYQLAIGGTA-VGTGLN---TYV----GFAENCTQRISELTGLPFKSAPNKFEALA 273
R+ + +G A GT GF ++E N +A++
Sbjct: 188 ARKRVNRSPLGSAALAGTTFPIDRERTAELLGFD-----GVTE----------NSLDAVS 232
Query: 274 SHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPEN-EPGSSIMPGKVNP 331
D +E A + + V L ++A ++ S G ++LP+ GSSIMP K NP
Sbjct: 233 DRDFALEFLSAASLLMVHLSRLAEELILWSSQE---FGFVELPDAFSTGSSIMPQKKNP 288
>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional.
Length = 431
Score = 55.8 bits (135), Expect = 3e-08
Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 25/196 (12%)
Query: 164 LLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTL 223
LL L+ L A+ +++E +N + IGR+H A P+T G + +G++ + R ++ L
Sbjct: 113 LLEELEDLIQAIRYQAREHRNTVMIGRSHGIHAEPITFGFKLAGWLAE----TLRNRERL 168
Query: 224 PRLYQ-LAIG--GTAVGTGLNTYVGFAENCTQRIS-ELTGLPFKSAPNKFEALASHDALV 279
RL + +A+G AVGT NT + + I+ + GL +A + + S D
Sbjct: 169 VRLREDIAVGQISGAVGTYANT-----DPRVEAITCQKLGLKPDTASTQ---VISRDRHA 220
Query: 280 EVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPEN----EPGSSIMPGKVNPTQVE 335
E L V SL + A +IR L R+ + L++ E + GSS MP K NP + E
Sbjct: 221 EYVQTLALVGASLERFATEIRNL---QRTDV--LEVEEYFAKGQKGSSAMPHKRNPIRSE 275
Query: 336 ALTMVAAQVMGNHVAV 351
L+ +A + VA
Sbjct: 276 RLSGLARVLRSYAVAA 291
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate
lyase/N-acetylglutamate synthase; Provisional.
Length = 614
Score = 55.9 bits (135), Expect = 4e-08
Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 19/190 (10%)
Query: 162 NRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKD 221
+LL +L L + ++ Q + G TH Q A P+T YV + R++D
Sbjct: 126 QQLLLALDQLQQQMVNVAERHQGTVLPGYTHLQRAQPVTFAHWCLAYVEMFERDYSRLED 185
Query: 222 TLPRLYQLAIG-GTAVGTGLNTYVGFAENCTQRISELTGLPFKSAP-NKFEALASHDALV 279
L RL +G G GT R + L F+ A N ++++ D ++
Sbjct: 186 ALTRLDTCPLGSGALAGTAYP---------IDREALAHNLGFRRATRNSLDSVSDRDHVM 236
Query: 280 EVSGALNTVAVSLM---KIANDIRFLGSGPRSGLGELKLPENEPGSSIMPGKVNPTQVEA 336
E+ ++ ++S++ ++A D+ F SG SG EL GSS+MP K NP +E
Sbjct: 237 EL---MSVASISMLHLSRLAEDLIFYNSG-ESGFIELA-DTVTSGSSLMPQKKNPDALEL 291
Query: 337 LTMVAAQVMG 346
+ +V G
Sbjct: 292 IRGKTGRVYG 301
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional.
Length = 502
Score = 55.0 bits (132), Expect = 6e-08
Identities = 55/224 (24%), Positives = 97/224 (43%), Gaps = 24/224 (10%)
Query: 142 QSSNDTFPTAMHIA-----VALEIHN--------RLLCSLQMLHDALDKKSQEFQNIIKI 188
Q + F + MHI + + ++ RL+ +L +++ + + + + I
Sbjct: 100 QEAKSDFVSNMHIGRSRNDMGVTMYRMSLRRYVLRLMEHHLLLQESILQLAADHKETIMP 159
Query: 189 GRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAE 248
THTQ A P T G ++ +ER+K T L Q +G A+ T F
Sbjct: 160 AYTHTQPAQPTTFGHYTLAIYDTMQRDLERMKKTYKLLNQSPMGAAALST-----TSFPI 214
Query: 249 NCTQRISELTGLPFKSA-PNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPR 307
+R+++L G F + N ++A+A D L+EVS L + + + +D L +
Sbjct: 215 K-RERVADLLG--FTNVIENSYDAVAGADYLLEVSSLLMVMMTNTSRWIHDFLLLATKEY 271
Query: 308 SGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAV 351
G+ + P + SSIMP K NP +E + + +G V
Sbjct: 272 DGITVAR-PYVQI-SSIMPQKRNPVSIEHARAITSSALGEAFTV 313
>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional.
Length = 455
Score = 53.5 bits (129), Expect = 2e-07
Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 20/198 (10%)
Query: 143 SSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLG 202
S ND T + + ++ LL +L+ L AL + ++ Q+ + G TH Q A P+T
Sbjct: 108 SRNDQVATDLKLWCKDQVAE-LLTALRQLQSALVETAENNQDAVMPGYTHLQRAQPVTFA 166
Query: 203 QEFSGYVTQIKYGIERVKDTLPRLYQLAIG-GTAVGTGLNTYVGFAENCTQRISELTGLP 261
YV + R++D L RL +G G GT R L
Sbjct: 167 HWCLAYVEMLARDESRLQDALKRLDVSPLGSGALAGTAYE---------IDREQLAGWLG 217
Query: 262 FKSAP-NKFEALASHDALVEVSGALNTVAVSLM---KIANDIRFLGSGPRSGLGELKLPE 317
F SA N ++++ D ++E+ L+ ++S++ + A D+ F SG +G EL
Sbjct: 218 FASATRNSLDSVSDRDHVLEL---LSDASISMVHLSRFAEDLIFFNSG-EAGFVELS-DR 272
Query: 318 NEPGSSIMPGKVNPTQVE 335
GSS+MP K NP +E
Sbjct: 273 VTSGSSLMPQKKNPDALE 290
>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional.
Length = 442
Score = 52.1 bits (125), Expect = 5e-07
Identities = 55/201 (27%), Positives = 97/201 (48%), Gaps = 20/201 (9%)
Query: 143 SSNDTFPTAMHIAVALEIHNRL---LCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPL 199
+S+D TA VAL++ + L + ++ L +A+ K++ E ++ + +GR+H P+
Sbjct: 93 TSSDCIDTA----VALQMRDSLKLIIEDVKNLMEAIKKRALEHKDTLMVGRSHGIHGEPI 148
Query: 200 TLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTG 259
T G + + +IK ++ ++ T+ + I G A+G + + E + E G
Sbjct: 149 TFGLVLAIWYDEIKRHLKALEHTMEVISVGKISG-AMGNFAHAPLELEE----LVCEELG 203
Query: 260 LPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELK--LPE 317
L K AP + + D ++ AL +A S KIA IR L R+ + E + +
Sbjct: 204 L--KPAPVSNQVI-QRDRYARLASALALLASSCEKIAVAIRHL---QRTEVYEAEEYFSK 257
Query: 318 NEPGSSIMPGKVNPTQVEALT 338
+ GSS MP K NP E +T
Sbjct: 258 GQKGSSAMPHKRNPVLSENIT 278
>gnl|CDD|236452 PRK09285, PRK09285, adenylosuccinate lyase; Provisional.
Length = 456
Score = 50.9 bits (123), Expect = 1e-06
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 52/191 (27%)
Query: 164 LLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTL 223
LL +L+ L DAL + + E+ ++ + RTH Q ATP TLG+E + +++ +++++
Sbjct: 143 LLPALRELIDALKELAHEYADVPMLSRTHGQPATPTTLGKEMANVAYRLERQLKQLEAV- 201
Query: 224 PRLYQLA--IGGTAVGT---GLNTY-----VGFAENCTQRISELTGLPFKSAPNKFEALA 273
++ I G AVG L Y F+ + L GL +
Sbjct: 202 ----EILGKING-AVGNYNAHLAAYPEVDWHAFSREF---VESL-GL-------TWNPYT 245
Query: 274 ----SHDALVEVSGAL---NTVAVSLMKIANDI------RFLGSGPRSGLGELKLPENEP 320
HD + E+ A+ NT+ L+ + D+ + ++G E
Sbjct: 246 TQIEPHDYIAELFDAVARFNTI---LIDLDRDVWGYISLGYFKQKTKAG---------EI 293
Query: 321 GSSIMPGKVNP 331
GSS MP KVNP
Sbjct: 294 GSSTMPHKVNP 304
>gnl|CDD|236352 PRK08937, PRK08937, adenylosuccinate lyase; Provisional.
Length = 216
Score = 48.9 bits (117), Expect = 2e-06
Identities = 48/206 (23%), Positives = 85/206 (41%), Gaps = 35/206 (16%)
Query: 284 ALNTVAVSLMKIANDIRFLGSGPRSGLGELKLP--ENEPGSSIMPGKVNPTQVEALTMVA 341
L +A SL K AN+IR L RS + E++ P + + GSS MP K NP E +T +A
Sbjct: 22 VLALIATSLEKFANEIRLLQ---RSEIREVEEPFAKGQKGSSAMPHKRNPIGSERITGLA 78
Query: 342 AQVMGNHVAVTVGGSNGH-FELNVFKPLIVSNVLRSIRLLADTTESF------TTKCVTG 394
+ VT + E ++ S+ R L D + +
Sbjct: 79 RVLRSY--LVTALENVPLWHERDLS----HSSAERIA--LPDAFLALDYILNRFVNILEN 130
Query: 395 ILPNEDTIAKHVNDSL-------MLVTALNPHIGYDKAAEIAKHAY----KTGITLKEAA 443
++ + I ++++ +L +L+ + +G ++A E+ + K L+E
Sbjct: 131 LVVFPENIERNLDKTLGFIATERVLLELVEKGMGREEAHELIREKAMEAWKNQKDLRELL 190
Query: 444 VK----LGYLTEQEYDQWVKPEKMLG 465
LT++E D+ PE +G
Sbjct: 191 EADERFTKQLTKEELDELFDPEAFVG 216
>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional.
Length = 435
Score = 49.2 bits (118), Expect = 4e-06
Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 25/192 (13%)
Query: 164 LLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTL 223
LL L + AL K++ E ++ IGR+H A P T G + + + + ER+
Sbjct: 116 LLADLDRVLAALKKRAFEHKDTPTIGRSHGIHAEPTTFGLKLARFYAEFARNRERLVAAR 175
Query: 224 PRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLPFKSAPNKFEALASH----DALV 279
+ AI G AVGT FA N R+ E K K E +++ D
Sbjct: 176 EEIATCAISG-AVGT-------FA-NIDPRVEEHVA---KKLGLKPEPVSTQVIPRDRHA 223
Query: 280 EVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLP--ENEPGSSIMPGKVNPTQVEAL 337
L +A S+ ++A +IR L R+ + E + + GSS MP K NP E L
Sbjct: 224 MFFATLGVIASSIERLAIEIRHL---QRTEVLEAEEFFSPGQKGSSAMPHKRNPVLTENL 280
Query: 338 T----MVAAQVM 345
T +V + V+
Sbjct: 281 TGLARLVRSYVV 292
>gnl|CDD|168324 PRK05975, PRK05975, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 351
Score = 46.6 bits (111), Expect = 2e-05
Identities = 59/220 (26%), Positives = 91/220 (41%), Gaps = 19/220 (8%)
Query: 136 DHVNKCQSSNDTFPTAMHIAVALEIHNRLLCS-LQMLHDALDKKSQEFQNIIKIGRTHTQ 194
HV+ +S D T++ + L+ + +L + L L LD F +G T Q
Sbjct: 100 AHVHFGATSQDVIDTSL--MLRLKAASEILAARLGALIARLDALEATFGQNALMGHTRMQ 157
Query: 195 DATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRI 254
A P+T+ + + + +R++ ++ L GG A GT L G A R+
Sbjct: 158 AAIPITVADRLASWRAPLLRHRDRLEALRADVFPLQFGG-AAGT-LEKLGGKAAAVRARL 215
Query: 255 SELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELK 314
++ GL AP + + D + + + L+ V SL K DI + E+
Sbjct: 216 AKRLGLE--DAP---QWHSQRDFIADFAHLLSLVTGSLGKFGQDIALMAQAG----DEIS 266
Query: 315 LPENEPGSSIMPGKVNPTQVEALTMV----AAQVMGNHVA 350
L GSS MP K NP E L + A QV G H A
Sbjct: 267 LSGGG-GSSAMPHKQNPVAAETLVTLARFNATQVSGLHQA 305
>gnl|CDD|235791 PRK06389, PRK06389, argininosuccinate lyase; Provisional.
Length = 434
Score = 44.9 bits (106), Expect = 8e-05
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 23/177 (12%)
Query: 182 FQNIIKI-----------GRTHTQDATPLTLGQEFSGYVTQIKY-GIERVKDTLPRLYQL 229
IIK+ G TH + A P+T+ + Y+ I Y I + L L ++
Sbjct: 129 LYEIIKVIPGFNLKGRLPGYTHFRQAMPMTV-NTYINYIKSILYHHINNLDSFLMDLREM 187
Query: 230 AIGGTAVGTGLNTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVA 289
G G+G Y + ++SEL G+ + + + +S ++++A
Sbjct: 188 PYG---YGSG---YGSPSSVKFNQMSELLGMEKNIKNPVYSSSLYIKTIENISYLISSLA 241
Query: 290 VSLMKIANDIRFLGSGPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMG 346
V L +I DI +G+ + E GSS+MP K NP +E +AA+ +
Sbjct: 242 VDLSRICQDIIIYY---ENGIITIP-DEFTTGSSLMPNKRNPDYLELFQGIAAESIS 294
>gnl|CDD|178440 PLN02848, PLN02848, adenylosuccinate lyase.
Length = 458
Score = 40.1 bits (94), Expect = 0.003
Identities = 48/169 (28%), Positives = 69/169 (40%), Gaps = 18/169 (10%)
Query: 173 DALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIG 232
A+ + EF + + RTH Q A+P TLG+E + + Y + R + L +
Sbjct: 155 KAISSLAHEFAYVPMLSRTHGQPASPTTLGKEMANFA----YRLSRQRKQLSEVKIKGKF 210
Query: 233 GTAVGTGLNTYVGFAENCTQRISE--LT--GLPFKSAPNKFEALASHDALVEVSGALNTV 288
AVG + E ++E +T GL F + E HD + E+ A++
Sbjct: 211 AGAVGNYNAHMSAYPEVDWPAVAEEFVTSLGLTFNPYVTQIE---PHDYMAELFNAVSRF 267
Query: 289 AVSLMKIANDIRFLGSGPRSGLGELK--LPENEPGSSIMPGKVNPTQVE 335
L+ DI S LG K E GSS MP KVNP E
Sbjct: 268 NNILIDFDRDIWSYIS-----LGYFKQITKAGEVGSSTMPHKVNPIDFE 311
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 39.4 bits (92), Expect = 0.005
Identities = 56/270 (20%), Positives = 105/270 (38%), Gaps = 34/270 (12%)
Query: 194 QDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQR 253
Q A P +LG + R L L++ I +G G F + +
Sbjct: 565 QPALPGSLGHYLLAVDGALA----RETHALFALFE-HIDVCPLGAGAGGGTTFPID-PEF 618
Query: 254 ISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGEL 313
++ L G + APN +A+AS D ++ A+ ++ L ++A D++ L + L +
Sbjct: 619 VARLLGFE-QPAPNSLDAVASRDGVLHFLSAMAAISTVLSRLAQDLQ-LWTTREFAL--V 674
Query: 314 KLPEN-EPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSN 372
LP+ GSS++P K NP +E + A V G + + F N F+ +
Sbjct: 675 SLPDALTGGSSMLPQKKNPFLLEFVKGRAGVVAGALASASAALGKTPFS-NSFE---AGS 730
Query: 373 VLRSIRLLADTTESFTTKC------VTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKAA 426
+ +A + + G+ ++ + H+ D + TA+ A
Sbjct: 731 PMNG--PIAQACAAIEDAAAVLVLLIDGLEADQARMRAHLEDGGVSATAV--------AE 780
Query: 427 EIAKHAYKTGITLKEAAVKLGYLTEQEYDQ 456
+ + I+ + A ++G Q DQ
Sbjct: 781 SLVV---RRSISFRSAHTQVGQAIRQSLDQ 807
>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family. This
group shares the zinc coordination sites of the
zinc-dependent alcohol dehydrogenases. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of an
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 306
Score = 32.3 bits (74), Expect = 0.58
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 195 DATPLTLGQEFSGYVTQIKYGIERVK 220
TP+ LG EFSG + ++ +E K
Sbjct: 53 VETPVVLGHEFSGTIVEVGPDVEGWK 78
>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase.
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent
medium chain alcohol dehydrogenase, catalyzes the
NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and
meso-butanediol to acetoin. BDH functions as a
homodimer. NAD(P)(H)-dependent oxidoreductases are the
major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Sorbitol and aldose reductase are NAD(+) binding
proteins of the polyol pathway, which interconverts
glucose and fructose. Sorbitol dehydrogenase is
tetrameric and has a single catalytic zinc per subunit.
Length = 351
Score = 32.5 bits (75), Expect = 0.63
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 193 TQDATPLTLGQEFSGYVTQIKYGIERVK 220
T + P+TLG EFSG V ++ G+ K
Sbjct: 60 TGETAPVTLGHEFSGVVVEVGSGVTGFK 87
>gnl|CDD|225248 COG2373, COG2373, Large extracellular alpha-helical protein [General
function prediction only].
Length = 1621
Score = 31.2 bits (71), Expect = 1.9
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 8/73 (10%)
Query: 394 GILPNEDTIAKHVNDSLMLVTALNPHIGYDKAAEIAKHAYKTGITLKEAAVK------LG 447
G D + + + +L NP + Y E+ + A + A L
Sbjct: 1246 GYSVPSDALNQMLE--RLLEYLQNPGLAYADEVELRRRALQAYALYVLARNGDAALADLR 1303
Query: 448 YLTEQEYDQWVKP 460
+ +Q D W P
Sbjct: 1304 GILDQSLDDWESP 1316
>gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate
transport and metabolism].
Length = 473
Score = 30.3 bits (69), Expect = 3.3
Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 19/74 (25%)
Query: 296 ANDIRFLGSGPRSG-LGELKLPENEPGSSIMPG-------KVNPTQVEALTMVAAQVMGN 347
I F+G G G G G SIMPG V P LT +AA+V G
Sbjct: 118 EKGILFVGMGVSGGEEGARH------GPSIMPGGQKEAYELVAPI----LTKIAAKVDGE 167
Query: 348 HVAVTVG-GSNGHF 360
+G GHF
Sbjct: 168 PCCTWIGPDGAGHF 181
>gnl|CDD|226000 COG3469, COG3469, Chitinase [Carbohydrate transport and
metabolism].
Length = 332
Score = 29.8 bits (67), Expect = 3.9
Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 23/87 (26%)
Query: 277 ALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGSSIMPGKVNPTQVEA 336
AL + N V VS MK A DI + P + A
Sbjct: 52 ALADTPRNYNVVTVSFMKGAGDI----------------------PTFKPYNDPDAEFRA 89
Query: 337 LTMVAAQVMGNHVAVTVGGSNGHFELN 363
+ A G V +++GG++GH EL
Sbjct: 90 -QVGALNAEGKAVLLSLGGADGHIELK 115
>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This
group contains proteins identified as sorbitol
dehydrogenases and other sugar dehydrogenases of the
medium-chain dehydrogenase/reductase family (MDR), which
includes zinc-dependent alcohol dehydrogenase and
related proteins. Sorbitol and aldose reductase are
NAD(+) binding proteins of the polyol pathway, which
interconverts glucose and fructose. Sorbitol
dehydrogenase is tetrameric and has a single catalytic
zinc per subunit. NAD(P)(H)-dependent oxidoreductases
are the major enzymes in the interconversion of alcohols
and aldehydes, or ketones. Related proteins include
threonine dehydrogenase, formaldehyde dehydrogenase, and
butanediol dehydrogenase. The medium chain alcohol
dehydrogenase family (MDR) has a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit. Horse
liver alcohol dehydrogenase is a dimeric enzyme and each
subunit has two domains. The NAD binding domain is in a
Rossmann fold and the catalytic domain contains a zinc
ion to which substrates bind. There is a cleft between
the domains that closes upon formation of the ternary
complex.
Length = 343
Score = 29.9 bits (68), Expect = 3.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 198 PLTLGQEFSGYVTQIKYGIERVK 220
PL LG EFSG V ++ G++ +
Sbjct: 53 PLVLGHEFSGTVEEVGSGVDDLA 75
>gnl|CDD|221774 pfam12792, CSS-motif, CSS motif domain associated with EAL. This
family with its characteristic highly conserved CSS
sequence motif is found N-terminal to the EAL,
pfam00563, domain in many cyclic diguanylate
phosphodiesterases.
Length = 206
Score = 29.0 bits (65), Expect = 5.6
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 477 NETIFHTEKVISQQILAAKVLPPWSRPSCPQARSIIRGRPSTLRY-SARTQFVRS 530
+ ++++ + A L P + C A LR +A + +VR
Sbjct: 12 RRALERLDRILDEADQALDALLPLTGKPCSPAHL------LELRRLAAFSPYVRE 60
>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase. L-threonine dehydrogenase
(TDH) catalyzes the zinc-dependent formation of
2-amino-3-ketobutyrate from L-threonine via NAD(H)-
dependent oxidation. THD is a member of the
zinc-requiring, medium chain NAD(H)-dependent alcohol
dehydrogenase family (MDR). MDRs have a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. NAD(P)(H)-dependent oxidoreductases are
the major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The N-terminal region typically
has an all-beta catalytic domain. These proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria) and have 2 tightly bound
zinc atoms per subunit. Sorbitol and aldose reductase
are NAD(+) binding proteins of the polyol pathway, which
interconverts glucose and fructose.
Length = 341
Score = 29.5 bits (67), Expect = 5.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 198 PLTLGQEFSGYVTQIKYGIERVK 220
PL G EF+G V ++ G+ RVK
Sbjct: 58 PLIFGHEFAGEVVEVGEGVTRVK 80
>gnl|CDD|146915 pfam04513, Baculo_PEP_C, Baculovirus polyhedron envelope protein,
PEP, C terminus. Polyhedra are large crystalline
occlusion bodies containing nucleopolyhedrovirus
virions, and surrounded by an electron-dense structure
called the polyhedron envelope or polyhedron calyx. The
polyhedron envelope (associated) protein PEP is thought
to be an integral part of the polyhedron envelope. PEP
is concentrated at the surface of polyhedra, and is
thought to be important for the proper formation of the
periphery of polyhedra. It is thought that PEP may
stabilise polyhedra and protect them from fusion or
aggregation.
Length = 140
Score = 28.1 bits (63), Expect = 6.7
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 8/64 (12%)
Query: 352 TVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLM 411
G N EL NVL +IRL + T + I + ++ + L
Sbjct: 8 NGNGGNQFLELT--------NVLNAIRLQNVQIAAQLTTLLDAIQTQLNDLSTDLTSLLA 59
Query: 412 LVTA 415
+
Sbjct: 60 DLDT 63
>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit. G proteins couple
receptors of extracellular signals to intracellular
signaling pathways. The G protein alpha subunit binds
guanyl nucleotide and is a weak GTPase. A set of
residues that are unique to G-alpha as compared to its
ancestor the Arf-like family form a ring of residues
centered on the nucleotide binding site. A Ggamma is
found fused to an inactive Galpha in the Dictyostelium
protein gbqA.
Length = 329
Score = 29.2 bits (66), Expect = 7.2
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 361 ELNVFKPLIVSNVLRSIRLLADTTESF 387
E ++ +I SN++RS++ L + E+
Sbjct: 34 EREQYRAVIYSNIIRSLKTLLEALENL 60
>gnl|CDD|176477 cd08640, DNA_pol_A_plastid_like, DNA polymerase A type from
plastids of higher plants possibly involve in DNA
replication or in the repair of errors occurring during
replication. DNA polymerase A type from plastids of
higher plants possibly involve in DNA replication or in
the repair of errors occurring during replication.
Family A polymerase functions primarily to fill DNA gaps
that arise during DNA repair, recombination and
replication. DNA-dependent DNA polymerases can be
classified in six main groups based upon phylogenetic
relationships with E. coli polymerase I (classA), E.
coli polymerase II (class B), E.coli polymerase III
(class C), euryarchaaeota polymerase II (class D), human
polymerase beta (class x), E. coli UmuC/DinB and
eukaryotic RAP 30/Xeroderma pigmentosum variant (class
Y). Family A polymerase are found primarily in organisms
related to prokaryotes and include prokaryotic DNA
polymerase I ,mitochondrial polymerase delta, and
several bacteriphage polymerases including those from
odd-numbered phage (T3, T5, and T7). The
three-dimensional structure of plastid DNA polymerase
has substantial similarity to Pol I. The structure of
Pol I resembles in overall morphology a cupped human
right hand, with fingers (which bind an incoming
nucleotide and interact with the single-stranded
template), palm (which harbors the catalytic amino acid
residues and also binds an incoming dNTP) and thumb
(which binds double-stranded DNA) subdomains.
Length = 371
Score = 28.9 bits (65), Expect = 8.9
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 30 RSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFGLDSKIADTISKAADEVI 84
R+ IN PI G SA I KA ++ + L + + DEVI
Sbjct: 284 RAAINTPIQG----------SAADIAMKAMLRIYRNLRLKRLGWKLLLQIHDEVI 328
>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase;
Provisional.
Length = 347
Score = 28.6 bits (64), Expect = 9.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 198 PLTLGQEFSGYVTQIKYGI 216
P+TLG EFSGYV + G+
Sbjct: 54 PITLGHEFSGYVEAVGSGV 72
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.382
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,399,800
Number of extensions: 2949606
Number of successful extensions: 2093
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2000
Number of HSP's successfully gapped: 75
Length of query: 607
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 504
Effective length of database: 6,369,140
Effective search space: 3210046560
Effective search space used: 3210046560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (27.5 bits)