RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7883
(607 letters)
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 459
Score = 510 bits (1314), Expect = e-178
Identities = 298/459 (64%), Positives = 359/459 (78%), Gaps = 3/459 (0%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
R E D+FGE+ VP DKY+GAQT RS NF IGG ERMP ++ A G+LKK+AA VN+
Sbjct: 3 RTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNESL 62
Query: 67 G-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
G LD KI+ I +AADEV SGKL +DHFPL ++QTGSGTQ+NMN NEVISNRAIE+LGGK
Sbjct: 63 GGLDPKISKAIQQAADEVASGKL-DDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGK 121
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
+GSK VHPN+H N+ QSSNDTFPT MHIA +L+I N L+ L L +AL+ KS+EF +I
Sbjct: 122 IGSKQ-VHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHI 180
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
+KIGRTH QDATPLTLGQEFSGYV Q++ GI+RV +L L LA GGTAVGTGLNT G
Sbjct: 181 VKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKPG 240
Query: 246 FAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
F ++IS+ TGL F++APN+FEALA+HDA+VE SGALNT+A SL KIA DIR+LGSG
Sbjct: 241 FDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSG 300
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
PR G EL LPENEPGSSIMPGKVNPTQ EALT V QVMGN+ A+T GS G FELNVF
Sbjct: 301 PRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVF 360
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
KP++++N+L SIRL+ D SF CV GI NE I + + SLMLVTALNP IGYD A
Sbjct: 361 KPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAA 420
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKML 464
+++AK+A+K GITLKE+A++LG LTE+E+D+WV PE ML
Sbjct: 421 SKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHML 459
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Length = 456
Score = 490 bits (1263), Expect = e-170
Identities = 269/459 (58%), Positives = 353/459 (76%), Gaps = 4/459 (0%)
Query: 6 VRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKG 65
VR EKDS G ++VP DK +GAQT RSL +F I E +MP ++I A+ + K+AAA+VN+
Sbjct: 1 VRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTE--KMPTSLIHALALTKRAAAKVNED 58
Query: 66 FG-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGG 124
G L + A I +AADEV++G+ +D FPL+IWQTGSGTQ+NMN+NEV++NRA E+LGG
Sbjct: 59 LGLLSEEKASAIRQAADEVLAGQH-DDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGG 117
Query: 125 KLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQN 184
G + VHPND VNK QSSND FPTAMH+A L + +L+ L+ L L++KS+ F +
Sbjct: 118 VRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFAD 177
Query: 185 IIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYV 244
I+KIGRTH QDATPLTLGQE SG+V +++ ++ ++ +LP + +LA+GGTAVGTGLNT+
Sbjct: 178 IVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHP 237
Query: 245 GFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGS 304
+A ++ +T PF +APNKFEALA+ DALV+ GAL +A SLMKIAND+R+L S
Sbjct: 238 EYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLAS 297
Query: 305 GPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNV 364
GPR G+GE+ +PENEPGSSIMPGKVNPTQ EALTM+ QVMGN VA+ +GG++G+FELNV
Sbjct: 298 GPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNV 357
Query: 365 FKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDK 424
F+P+++ N L+S+RLLAD ESF C GI PN + I + +N+SLMLVTALN HIGYDK
Sbjct: 358 FRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDK 417
Query: 425 AAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKM 463
AAEIAK A+K G+TLK AA+ LGYL+E E+D WV+PE+M
Sbjct: 418 AAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQM 456
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]}
Length = 460
Score = 466 bits (1201), Expect = e-161
Identities = 262/461 (56%), Positives = 329/461 (71%), Gaps = 3/461 (0%)
Query: 7 RIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGF 66
RIE+D+ GE+ VP DKY+GAQT RSL NF IG + RMP II A G+LKKAAA+ N
Sbjct: 1 RIERDTMGEVRVPADKYWGAQTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLEL 60
Query: 67 G-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGK 125
G L +IA I +AA+EV+ GK +DHFPL ++QTGSGTQTNMNVNEVI+NRA E+LG
Sbjct: 61 GELPEEIAKAIIQAAEEVVQGKW-DDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGKP 119
Query: 126 LGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNI 185
LGSK HPNDHVN+ QSSNDTFPTAM++AVAL +H RL +++ L K+Q F I
Sbjct: 120 LGSKY-AHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQI 178
Query: 186 IKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVG 245
+K+GRTH DA P+TLGQE + Q+K + VK+ LY LAIGGTAVGTGLN +
Sbjct: 179 VKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHPR 238
Query: 246 FAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSG 305
F E + ++E TGLPF+ A N+F ALA+HD LV V GA+ T+A +LMKI ND+R+L SG
Sbjct: 239 FGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASG 298
Query: 306 PRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVF 365
P +G+GE+ +P NEPGSSIMPGKVNPTQVEALTMV +V GN V GS G+F+LNV+
Sbjct: 299 PYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVY 358
Query: 366 KPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDKA 425
KP++ + L SI LLAD SF GI PN + I +++ + ML TALN IGYDKA
Sbjct: 359 KPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNKAIGYDKA 418
Query: 426 AEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGP 466
AEI K A K TLK+AA++LGYLTE+E+D+ V P ++ P
Sbjct: 419 AEIVKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLAKP 459
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp.,
ym55-1 [TaxId: 1409]}
Length = 462
Score = 416 bits (1070), Expect = e-141
Identities = 208/462 (45%), Positives = 299/462 (64%), Gaps = 5/462 (1%)
Query: 6 VRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKG 65
VRIEKD GE E+P D YYG QT+R+ NFPI G R+ +I ++GI+KK+AA N
Sbjct: 1 VRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGY--RIHPELIKSLGIVKKSAALANME 58
Query: 66 FG-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGG 124
G LD ++ I KAADEVI GK D F + Q G+GT NMN NEVI+NRA+E++G
Sbjct: 59 VGLLDKEVGQYIVKAADEVIEGKW-NDQFIVDPIQGGAGTSINMNANEVIANRALELMGE 117
Query: 125 KLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQN 184
+ G+ + PN HVN QS+ND FPTA HIAV + N+L+ + + + KK+ EF
Sbjct: 118 EKGNYSKISPNSHVNMSQSTNDAFPTATHIAVL-SLLNQLIETTKYMQQEFMKKADEFAG 176
Query: 185 IIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYV 244
+IK+GRTH QDA P+ LGQEF Y I IER+ +T LY + +G TAVGTGLN
Sbjct: 177 VIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADP 236
Query: 245 GFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGS 304
+ T+ +++ +G P +SA + +A + D EVS AL +++ KIAND+R + S
Sbjct: 237 EYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMAS 296
Query: 305 GPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNV 364
GPR+GL E+ LP +PGSSIMPGKVNP E + VA QV GN + +T G FELNV
Sbjct: 297 GPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNV 356
Query: 365 FKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHIGYDK 424
+P++ N+++SI ++ + +SFT C+ GI NE+ + ++V S+ ++TA+NPH+GY+
Sbjct: 357 MEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYET 416
Query: 425 AAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGP 466
AA++A+ AY TG +++E +K G LTE++ ++ + P +M+ P
Sbjct: 417 AAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHP 458
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli
[TaxId: 562]}
Length = 459
Score = 401 bits (1030), Expect = e-135
Identities = 179/457 (39%), Positives = 271/457 (59%), Gaps = 3/457 (0%)
Query: 1 MGKDGVRIEKDSFGELEVPNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAA 60
M + +RIE+D G EVP D YYG T+R++ NF I + M ++KKAAA
Sbjct: 1 MSNN-IRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAA 59
Query: 61 QVNKGFG-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAI 119
NK + +A+ I A DEV++ D FP+ ++Q G+GT NMN NEV++N +
Sbjct: 60 MANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGL 119
Query: 120 EMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKS 179
E++G + G ++PNDHVNKCQS+ND +PT IAV + L+ ++ L + ++K+
Sbjct: 120 ELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLIK-LVDAINQLREGFERKA 178
Query: 180 QEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTG 239
EFQ+I+K+GRT QDA P+TLGQEF + +K ++ ++ T L ++ +G TA+GTG
Sbjct: 179 VEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTG 238
Query: 240 LNTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDI 299
LNT ++ ++++E+TG P A + EA + A V V GAL +AV + KI ND+
Sbjct: 239 LNTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDL 298
Query: 300 RFLGSGPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGH 359
R L SGPR+GL E+ LPE + GSSIMP KVNP E + V +V+GN VT+ G
Sbjct: 299 RLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQ 358
Query: 360 FELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPH 419
+LNV +P+I + S+ +L + + KC+ GI N++ +V +S+ +VT LNP
Sbjct: 359 LQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPF 418
Query: 420 IGYDKAAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQ 456
IG+ + K +TG +++E ++ G LTE E D
Sbjct: 419 IGHHNGDIVGKICAETGKSVREVVLERGLLTEAELDD 455
>gi|89101013|ref|ZP_01173856.1|(9-416:430) adenylosuccinate lyase
[Bacillus sp. NRRL B-14911] gi|89084274|gb|EAR63432.1|
adenylosuccinate lyase [Bacillus sp. NRRL B-14911] E=0
s/c=1.85 id=87% cov=100%
Length = 408
Score = 199 bits (507), Expect = 1e-58
Identities = 76/428 (17%), Positives = 143/428 (33%), Gaps = 49/428 (11%)
Query: 45 PEAIISAMGILKKAAAQVNKGFGLDSK-IADTISKAADEVISGKLYEDHFPLSIWQTGSG 103
E A ++ A + G K I + A I I +
Sbjct: 8 EENRFKAWLEVEILACEAWAELGDIPKEDVQKIRENASFDIE----------RINEIEQE 57
Query: 104 TQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNR 163
T +V + LG V+ +S D TA+ + + ++
Sbjct: 58 T--RHDVVAFTRA-----VSETLG-----EERKWVHYGLTSTDVVDTALSYLIK-QANSI 104
Query: 164 LLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTL 223
LL L+ + L K++E + + +GRTH A P T G + + + ++K +ER K
Sbjct: 105 LLQDLENFVEILKNKAKEHKYTVMMGRTHGVHAEPTTFGLKLALWYEEMKRNLERFKQAA 164
Query: 224 PRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSG 283
+ + G AVGT N +++ D
Sbjct: 165 SGVEFGKMSG-AVGTYANINPFVESYVCEKL-------GLQPAPISTQTLQRDRHAHYMA 216
Query: 284 ALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQ 343
A++ +A S+ K A +IR L + E + + GSS MP K NP E +T +A
Sbjct: 217 AISLIATSIEKFAVEIRGLQKSETREVEEF-FAKGQKGSSAMPHKRNPIGSENMTGLARV 275
Query: 344 VMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIA 403
+ H+ E ++ +L + + + V + + +
Sbjct: 276 -IRGHMLTAYENVPLWHERDISHSSAERIILPDATIALNYMLNRFGNIVKNLTVFPENMK 334
Query: 404 KHVNDSLMLVTA-----------LNPHIGYDKAAEIAKHAYKTGITLKEAAVK----LGY 448
++++ +L L+ + + YD A A++ + K
Sbjct: 335 RNMDRTLGLIYSQRVLLALIDKGMAREEAYDVVQPRAMEAWEKQVAFKSLVEADETISSR 394
Query: 449 LTEQEYDQ 456
L+ +E +
Sbjct: 395 LSAEEIED 402
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Length = 448
Score = 182 bits (462), Expect = 9e-52
Identities = 89/459 (19%), Positives = 156/459 (33%), Gaps = 47/459 (10%)
Query: 21 DKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFGLDSKIADTISKAA 80
D Y+ A +R + + + M + A A+ GL + +A
Sbjct: 5 DAYFTAPAMREIFS----------DRGRLQGMLDFEAALARAEASAGL-------VPHSA 47
Query: 81 DEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNK 140
I + + T N + V + + G +V+
Sbjct: 48 VAAIEAACQAERYDTGALANAIATAGNSAIPLVKALGKVIATGVP-------EAERYVHL 100
Query: 141 CQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLT 200
+S D T + + + + + + L L D L +++ + + +GRT Q ATP+T
Sbjct: 101 GATSQDAMDTGLVLQLR-DALDLIEADLGKLADTLSQQALKHADTPLVGRTWLQHATPVT 159
Query: 201 LGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGL 260
LG + +G + + +R+++ PRL L GG + A + ++E L
Sbjct: 160 LGMKLAGVLGALTRHRQRLQELRPRLLVLQFGGASGSL--AALGSKAMPVAEALAEQLKL 217
Query: 261 PFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEP 320
P D LVE + L VA SL K DI L + E +
Sbjct: 218 TLPEQPWHT----QRDRLVEFASVLGLVAGSLGKFGRDISLLMQTEAGEVFEPS-APGKG 272
Query: 321 GSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLL 380
GSS MP K NP L A +V G + H + L+
Sbjct: 273 GSSTMPHKRNPVGAAVLIGAATRVPGLLSTLFAAMPQEHERSLGLWHAEWETLPDICCLV 332
Query: 381 ADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTA------LNPHIGYDKAAEI----AK 430
+ G+ + + ++++ + LV A L +G D+A + +
Sbjct: 333 SGAL-RQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSIVLAQRLGRDRAHHLLEQCCQ 391
Query: 431 HAYKTGITLKEAAVK----LGYLTEQEYDQWVKPEKMLG 465
A L+ L+ +E D+ + P LG
Sbjct: 392 RAVAEQRHLRAVLGDEPQVSAELSGEELDRLLDPAHYLG 430
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Length = 444
Score = 169 bits (428), Expect = 5e-47
Identities = 85/436 (19%), Positives = 158/436 (36%), Gaps = 37/436 (8%)
Query: 45 PEAIISAMGILKKAAAQVNKGFG-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSG 103
A++S M + A AQ G + A I +AA I D T +G
Sbjct: 18 DRALVSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAI------DKIDFDALATATG 71
Query: 104 TQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNR 163
N+ + V AI + +V+ +S D TA + +
Sbjct: 72 LAGNIAIPFVKQLTAIVKDADE-------DAARYVHWGATSQDILDTACILQCR-DALAI 123
Query: 164 LLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTL 223
+ +Q ++ ++Q +++ + +GRT Q A P+TLG + + + + K ++R+
Sbjct: 124 VQNQVQQCYETALSQAQTYRHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDRINAIK 183
Query: 224 PRLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSG 283
R+ +GG + ++ + E K D +VE++
Sbjct: 184 ARVLVAQLGGAV------GSLASLQDQGSIVVEAYAKQLKLGQTACTWHGERDRIVEIAS 237
Query: 284 ALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQ 343
L + ++ K+A D + + + E + GSS MP K NP ++ A +
Sbjct: 238 VLGIITGNVGKMARDWSLMMQTEIAEVFEPT-AKGRGGSSTMPHKRNPVAAASVLAAANR 296
Query: 344 VMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIA 403
V ++ E ++ L I L T + G+ N + +
Sbjct: 297 VPALMSSIYQ-SMVQEHERSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAENMH 355
Query: 404 KHVNDSLMLV------TALNPHIGYDKAAEI----AKHAYKTGITLKEAAVKL----GYL 449
+++ + L+ AL PH+G A + K A LK+ ++ Y
Sbjct: 356 QNIECTHGLIMAEAVMMALAPHMGRLNAHHVVEAACKTAVAEQKHLKDIISQVDEVKQYF 415
Query: 450 TEQEYDQWVKPEKMLG 465
+ D+ KPE LG
Sbjct: 416 NPSQLDEIFKPESYLG 431
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima
[TaxId: 2336]}
Length = 429
Score = 165 bits (418), Expect = 1e-45
Identities = 77/436 (17%), Positives = 149/436 (34%), Gaps = 47/436 (10%)
Query: 45 PEAIISAMGILKKAAAQVNKGFGLDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGT 104
EA ++ A + + G+ I K E I + +++
Sbjct: 15 EEAKYRRWLEVELAVTRAYEELGM-------IPKGVTERIRNNA---KIDVELFKKIEEK 64
Query: 105 QTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRL 164
TN +V + E +G +G + + +S+D TA +A+ +E L
Sbjct: 65 -TNHDVVAFV-----EGIGSMIG-----EDSRFFHYGLTSSDVLDTANSLAL-VEAGKIL 112
Query: 165 LCSLQMLHDALDKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLP 224
L SL+ D L + + +++ IGRTH A P + G + G+ +++K ++R++ +
Sbjct: 113 LESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIE 172
Query: 225 RLYQLAIGGTAVGTGLNTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGA 284
+ I G + + + D
Sbjct: 173 EVSYGKISGAVGNYANVPPEVEEKALS--------YLGLKPEPVSTQVVPRDRHAFYLST 224
Query: 285 LNTVAVSLMKIANDIRFLGSGPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQV 344
L VA + +IA +IR L + E + + GSS MP K NP E LT ++ +
Sbjct: 225 LAIVAAGIERIAVEIRHLQRTEVLEVEEP-FRKGQRGSSAMPHKKNPITCERLTGLSRMM 283
Query: 345 MGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAK 404
++ E ++ + V T V + NE+ + K
Sbjct: 284 RAYVDP-SLENIALWHERDISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKK 342
Query: 405 HVNDSLMLVTA-----------LNPHIGYDKAAEIAKHAYKTGITLKEAAVK----LGYL 449
+++ + LV + L YD A + + E ++ +
Sbjct: 343 NIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNSEKHFLEYLLEDEEVKKLV 402
Query: 450 TEQEYDQWVKPEKMLG 465
T++E ++ L
Sbjct: 403 TKEELEELFDISYYLK 418
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Escherichia coli [TaxId: 562]}
Length = 455
Score = 147 bits (372), Expect = 3e-39
Identities = 65/410 (15%), Positives = 135/410 (32%), Gaps = 41/410 (10%)
Query: 68 LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKLG 127
L ++ + +A + ++ + + ++ S +E
Sbjct: 48 LTAEEQAQLEEALNVLLED-----------VRARPQQILESDAEDIHSW--VE----GKL 90
Query: 128 SKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIK 187
++ +S ND T + + + L + + L AL + +Q Q+ +
Sbjct: 91 IDKVGQLGKKLHTGRSRNDQVATDLKLWCKDTVSELL-TANRQLQSALVETAQNNQDAVM 149
Query: 188 IGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFA 247
G TH Q A P+T YV + R++D L RL +G A+
Sbjct: 150 PGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGT------AY 203
Query: 248 ENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPR 307
E ++++ G + N ++++ D ++E+ A V L + A D+ F +G
Sbjct: 204 EIDREQLAGWLGFASATR-NSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEA 262
Query: 308 SGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKP 367
+ GSS+MP K NP +E + +V G + + N
Sbjct: 263 GFVELS--DRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQ 320
Query: 368 LIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTALNPHI------- 420
+ ++ D + GI + T L ++
Sbjct: 321 EDKEGLFDALDTWLDCLHMA-ALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPF 379
Query: 421 --GYDKAAEIAKHAYKTGITLKEAAV----KLGYLTEQEYDQWVKPEKML 464
+ E A + G L++ + K + +++ + + L
Sbjct: 380 REAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPILSLQSCL 429
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 402
Score = 142 bits (357), Expect = 1e-37
Identities = 73/439 (16%), Positives = 153/439 (34%), Gaps = 60/439 (13%)
Query: 19 PNDKYYGAQTVRSLINFPIGGESERMPEAIISAMGILKKAAAQVNKGFGL-DSKIADTIS 77
P D YG++ +R L EAII+A +++A + G+ + + ++
Sbjct: 4 PFDWRYGSEEIRRLFT----------NEAIINAYLEVERALVCALEELGVAERGCCEKVN 53
Query: 78 KAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDH 137
KA+ E +T ++ ++ + +
Sbjct: 54 KASVSADEVYRLER-------------ETGHDILSLVLLL------------EQKSGCRY 88
Query: 138 VNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDALDKKSQEFQNIIKIGRTHTQDAT 197
V+ +SND TA + + + + + D L +++++ + +GRTH Q A
Sbjct: 89 VHYGATSNDIIDTAWALLIRRALAAVKEKARA-VGDQLASMARKYKTLEMVGRTHGQWAE 147
Query: 198 PLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTAVGTGLNTYVGFAENCTQRISEL 257
P+TLG +F+ Y ++ ++ +G + T + E + +
Sbjct: 148 PITLGFKFANYYYELYIACRQLALAEEF------IRAKIGGAVGTMASWGELGLEVRRRV 201
Query: 258 TGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKIANDIRFLGSGPRSGLGELKLPE 317
+A ++ ++ AL +A ++A +IR L ++ E
Sbjct: 202 AERLGLPHHVITTQVAPRESFAVLASALALMAAVFERLAVEIRELSRPEIG-----EVVE 256
Query: 318 NEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVSNVLRSI 377
GSS MP K NPT E + +A V V E ++ +
Sbjct: 257 GGGGSSAMPHKANPTASERIVSLARYVR-ALTHVAFENVALWHERDLTNSANERVWIPEA 315
Query: 378 RLLADTTESFTTKCVTGILPNEDTIAKHVNDSLMLVTA-----------LNPHIGYDKAA 426
L D + + + + +E+ I +++ +L + + Y KA
Sbjct: 316 LLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAYKKAK 375
Query: 427 EIAKHAYKTGITLKEAAVK 445
E+ ++ E ++
Sbjct: 376 EVKALTFEYQKWPVERLIE 394
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 459
Score = 139 bits (351), Expect = 2e-36
Identities = 67/420 (15%), Positives = 128/420 (30%), Gaps = 40/420 (9%)
Query: 57 KAAAQVNKGFG-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVIS 115
KA ++ + G L D I D+V + F L+ T
Sbjct: 38 KAYSRGLEKAGLLTKAEMDQILHGLDKVAEEW-AQGTFKLNSNDEDIHT----------- 85
Query: 116 NRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDAL 175
A E + ++ +S ND T + + + L L L +
Sbjct: 86 --ANERRL----KELIGATAGKLHTGRSRNDQVVTDLRLWMRQTCS-TLSGLLWELIRTM 138
Query: 176 DKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTA 235
+++ ++++ G TH Q A P+ + + ER+ + R+ L +G A
Sbjct: 139 VDRAEAERDVLFPGYTHLQRAQPIRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSGA 198
Query: 236 VGTGLNTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKI 295
+ +T N +A + D + E + L ++
Sbjct: 199 IAGNPLGVDRELLRAELNFGAIT-------LNSMDATSERDFVAEFLFWRSLCMTHLSRM 251
Query: 296 ANDIRFLGSGPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGG 355
A D+ + S + GSS+MP K NP +E + A +V G + +
Sbjct: 252 AEDLILYCTKEFSFVQL--SDAYSTGSSLMPRKKNPDSLELIRSKAGRVFGRCAGLLMTL 309
Query: 356 SNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVNDSL----- 410
N V ++ + T T + E+ D L
Sbjct: 310 KGLPSTYNKDLQEDKEAVFEVSDTMSAVLQVATGVISTLQIHQENMGQALSPDMLATDLA 369
Query: 411 -MLVTALNP-HIGYDKAAEIAKHAYKTGITLKEAAV----KLGYLTEQEYDQWVKPEKML 464
LV P ++ + + A G+ L + ++ + L + +
Sbjct: 370 YYLVRKGMPFRQAHEASGKAVFMAETKGVALNQLSLQELQTISPLFSGDVICVWDYRHSV 429
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Domestic duck (Anas platyrhynchos), delta-crystallin
[TaxId: 8839]}
Length = 449
Score = 127 bits (320), Expect = 2e-32
Identities = 69/420 (16%), Positives = 141/420 (33%), Gaps = 40/420 (9%)
Query: 57 KAAAQVNKGFG-LDSKIADTISKAADEVISGKLYEDHFPLSIWQTGSGTQTNMNVNEVIS 115
A A+ + G L + I ++ IS + + F + Q++ +++
Sbjct: 27 MAYAKALEKAGILTKTELEKILSGLEK-ISEEWSKGVFVVK--------QSDEDIHTANE 77
Query: 116 NRAIEMLGGKLGSKDPVHPNDHVNKCQSSNDTFPTAMHIAVALEIHNRLLCSLQMLHDAL 175
R E++G ++ +S ND T + + + + + L L L
Sbjct: 78 RRLKELIG---------DIAGKLHTGRSRNDQVVTDLKLFMK-NSLSIISTHLLQLIKTL 127
Query: 176 DKKSQEFQNIIKIGRTHTQDATPLTLGQEFSGYVTQIKYGIERVKDTLPRLYQLAIGGTA 235
+++ ++I G H Q A P+ Q + + ER+ + R+ L +G A
Sbjct: 128 VERAAIEIDVILPGYDHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGA 187
Query: 236 VGTGLNTYVGFAENCTQRISELTGLPFKSAPNKFEALASHDALVEVSGALNTVAVSLMKI 295
+ + + + + N +A++ D +VE + + L K+
Sbjct: 188 LAG-------NPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKM 240
Query: 296 ANDIRFLGSGPRSGLGELKLPENEPGSSIMPGKVNPTQVEALTMVAAQVMGNHVAVTVGG 355
A D+ + L GSS+MP K NP +E + A +V G ++ +
Sbjct: 241 AEDLIIYSTSEFGFLTL--SDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVL 298
Query: 356 SNGHFELNVFKPLIVSNVLRSIRLLADTTESFTTKCVTGILPNEDTIAKHVND------S 409
N V + L + T T + E+ + +
Sbjct: 299 KGLPSTYNKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLA 358
Query: 410 LMLVTALNP-HIGYDKAAEIAKHAYKTGITLKEAAV----KLGYLTEQEYDQWVKPEKML 464
L LV P + + + A GIT+ + ++ + + Q +
Sbjct: 359 LYLVRKGVPFRQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSV 418
>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic
enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Length = 298
Score = 31.1 bits (70), Expect = 0.31
Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 425 AAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPEYHPYFKP 474
A IAK AY+ A+ Y ++ + +++ ++ +Y+ +
Sbjct: 245 AVRIAKEAYRNNT----AST---YPQPEDLEAFIR-SQVYSTDYNCFVAD 286
>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic
enzyme {Human (Homo sapiens) [TaxId: 9606]}
Length = 294
Score = 31.1 bits (70), Expect = 0.39
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 425 AAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPEYHPY 471
A ++ ++ Y + + Y ++ ++VK E+ EY
Sbjct: 248 AIKVTEYLYANKMAFR-------YPEPEDKAKYVK-ERTWRSEYDSL 286
>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic
enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Length = 308
Score = 31.1 bits (70), Expect = 0.39
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 425 AAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPEYHPYFKP 474
A E+AK+ YK G A + Y ++ +++V+ ++ EY
Sbjct: 244 AVEMAKYCYKNGT----ANL---YPQPEDLEKYVR-AQVYNTEYEELINA 285
>d1zcaa1 a.66.1.1 (A:83-204) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 122
Score = 28.0 bits (62), Expect = 1.4
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 361 ELNVFKPLIVSNVLRSIRLLADTTESF 387
L F+ I N+L+ R+L D +
Sbjct: 5 ALLEFRDTIFDNILKGSRVLVDARDKL 31
>d1t98a2 a.47.6.1 (A:119-281) Chromosome partition protein MukF
(KicB), C-terminal domain {Escherichia coli [TaxId:
562]}
Length = 163
Score = 27.9 bits (62), Expect = 2.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 337 LTMVAAQVMGNHVAVTVGGSNGHFELNVFKPLIVS 371
L++VA ++ A GG H+ NV+ PL S
Sbjct: 11 LSIVAGELKRAADAAEEGGDEFHWHRNVYAPLKYS 45
>d1zcba1 a.66.1.1 (A:76-201) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 126
Score = 27.2 bits (60), Expect = 2.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 361 ELNVFKPLIVSNVLRSIRLLADTTESF 387
F+P I SNV++ +R+L D E
Sbjct: 5 AREEFRPTIYSNVIKGMRVLVDAREKL 31
>d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 121
Score = 27.2 bits (60), Expect = 2.8
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 361 ELNVFKPLIVSNVLRSIRLLADTTESF 387
E +K ++ SN ++SI +
Sbjct: 5 ECKQYKAVVYSNTIQSIIAIIRAMGRL 31
>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 121
Score = 27.2 bits (60), Expect = 2.8
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 361 ELNVFKPLIVSNVLRSIRLLADTTESF 387
E F +I N L+SI + +
Sbjct: 5 ECLEFIAIIYGNTLQSILAIVRAMTTL 31
>d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 117
Score = 26.8 bits (59), Expect = 3.2
Identities = 3/27 (11%), Positives = 12/27 (44%)
Query: 361 ELNVFKPLIVSNVLRSIRLLADTTESF 387
+ F L+ N+ +++ + ++
Sbjct: 5 DKRGFTKLVYQNIFTAMQAMIRAMDTL 31
>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440
{Human (Homo sapiens) [TaxId: 9606]}
Length = 142
Score = 26.0 bits (57), Expect = 8.1
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 417 NPHIGYDKAAEIAKHAYKTGITLKEAAVKLGYLTEQEYDQWVKPEKMLGPEYHP 470
P + Y+K + ++ Y I K A + Y + E H
Sbjct: 86 KPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVY---RFVCDLQSLLGYTPEELHA 136
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.382
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,163,398
Number of extensions: 98851
Number of successful extensions: 235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 25
Length of query: 607
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 516
Effective length of database: 1,158,166
Effective search space: 597613656
Effective search space used: 597613656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.4 bits)