BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7884
(240 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|383855824|ref|XP_003703410.1| PREDICTED: ecdysone-induced protein 78C-like [Megachile rotundata]
Length = 462
Score = 326 bits (835), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 166/287 (57%), Positives = 197/287 (68%), Gaps = 56/287 (19%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR
Sbjct: 53 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 112
Query: 63 ERSDSET-----------GSTRVSTTGAE------------------------------- 80
ER + G ++++ GA
Sbjct: 113 ERGPEDAVPTTTTTTATTGVQQLTSPGAANNNNNNNNNNNNNTSQNNNNSSGQGQNAIPC 172
Query: 81 -PPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSL 139
PP+++ A ++ D KQL YDVIL VSQAHH++C +TEE TR +VRKP+ +
Sbjct: 173 VPPAAVVEA-------DQSDADVKQLAVYDVILQVSQAHHAHCGFTEESTRGIVRKPMII 225
Query: 140 P------PSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLS 193
P P+ PE ASSTAE ESQR+WLWQQFA VTPSVQRVVEFAKRVPGFCDLS
Sbjct: 226 PASTSSQPASPEDPEAASSTAETVESQRIWLWQQFATRVTPSVQRVVEFAKRVPGFCDLS 285
Query: 194 QDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYVTRQQLEVMYD 240
QDDQLILIK+GFFE+W+ ++S++TTDSS+TF DG +TRQQ+E+MY+
Sbjct: 286 QDDQLILIKVGFFEVWLSHISKMTTDSSMTFEDGTCITRQQMELMYE 332
>gi|322786180|gb|EFZ12785.1| hypothetical protein SINV_06426 [Solenopsis invicta]
Length = 406
Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 165/280 (58%), Positives = 193/280 (68%), Gaps = 42/280 (15%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR
Sbjct: 1 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 60
Query: 63 ERS-------------------DSETGSTRVSTTGAEPPSSL----------------ET 87
ER E TG S+ ++
Sbjct: 61 ERGPEDTMATTMTTTTTTTTMAAMEMQQLNTPDTGNNNASNKNNNNNNNNNNNNNNNTQS 120
Query: 88 AGPVQSLPSS-------TELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLP 140
+ +PS+ ++ D KQL YDVI VSQAHH++C +TEE TR L RKP+ +P
Sbjct: 121 QNAISRVPSAAVVEADQSDADVKQLAVYDVIHQVSQAHHAHCGFTEESTRGLTRKPMIIP 180
Query: 141 PSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLIL 200
P+ PE ASSTAE ESQR+WLWQQFA VTPSVQRVVEFAKR+PGFC+LSQDDQLIL
Sbjct: 181 PASPEDPEAASSTAETVESQRIWLWQQFATRVTPSVQRVVEFAKRMPGFCELSQDDQLIL 240
Query: 201 IKMGFFELWIGYVSRLTTDSSLTFSDGMYVTRQQLEVMYD 240
IK+GFFE+W+ ++S++TTD+S+TF DG Y TRQQLE+MY+
Sbjct: 241 IKVGFFEVWLCHISKMTTDNSMTFEDGTYFTRQQLELMYE 280
>gi|328710767|ref|XP_001952732.2| PREDICTED: ecdysone-induced protein 78C-like [Acyrthosiphon pisum]
Length = 570
Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 169/286 (59%), Positives = 197/286 (68%), Gaps = 60/286 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCL VGMSRDSVRYGRVPKRSR
Sbjct: 172 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLTVGMSRDSVRYGRVPKRSR 231
Query: 63 ERSDSET-------------------------------------------GSTRVST--- 76
E+ +SE+ GS V+
Sbjct: 232 EQLESESKTVSAADSMAAAAVQVTTTTATTTTVSANAAAAVAAAVAIGIGGSAPVTADPI 291
Query: 77 -TGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRK 135
TG P + +ET G S+ +YDVI A+SQAH +NC+YT+E TR L+RK
Sbjct: 292 LTGTGPTAVIETNGGSVSI------------SYDVIAAISQAHLTNCDYTDELTRTLLRK 339
Query: 136 PVSLPPSE-VSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQ 194
PV+ PP++ SSPEVASSTA+ E Q++WLWQQ AAH+TP+VQRVVEFAKRVPGF DLSQ
Sbjct: 340 PVASPPAQGCSSPEVASSTADSEEQQKIWLWQQLAAHITPTVQRVVEFAKRVPGFVDLSQ 399
Query: 195 DDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYVTRQQLEVMYD 240
DDQLILIK+GFFELW+ YVSRL TD SLTF DG ++TRQQLE++YD
Sbjct: 400 DDQLILIKVGFFELWLCYVSRLATDLSLTFYDGTFITRQQLELIYD 445
>gi|340714852|ref|XP_003395937.1| PREDICTED: ecdysone-induced protein 78C-like [Bombus terrestris]
Length = 508
Score = 320 bits (819), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 161/287 (56%), Positives = 196/287 (68%), Gaps = 56/287 (19%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCL+DG CLVIR++RNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR
Sbjct: 99 KGFFRRSIQKQIEYRCLKDGNCLVIRISRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 158
Query: 63 ERSDSET-----------GSTRVSTTGAE------------------------------- 80
ER +T G ++++
Sbjct: 159 ERGPEDTVPTTTSTTTTTGVQQLTSPAGANNNNNNTNNNNNNTSSQNNNNNSQAQNAIPC 218
Query: 81 -PPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSL 139
PP+++ A ++ D KQL YDVIL VSQAHH++C +TEE TR +VRKP+ +
Sbjct: 219 VPPAAVVEA-------DQSDADVKQLAVYDVILQVSQAHHAHCGFTEESTRGIVRKPMII 271
Query: 140 P------PSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLS 193
P P+ PE ASSTAE ESQR+WLWQQFA +TPSVQRVVEFAKRVPGFCDLS
Sbjct: 272 PASTSSQPASPEDPEAASSTAETVESQRIWLWQQFATRITPSVQRVVEFAKRVPGFCDLS 331
Query: 194 QDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYVTRQQLEVMYD 240
QDDQLILIK+GFFE+W+ ++S++TTDSS+TF DG Y+TRQQ+E+MY+
Sbjct: 332 QDDQLILIKVGFFEVWLSHISKMTTDSSMTFEDGTYITRQQMELMYE 378
>gi|350398884|ref|XP_003485338.1| PREDICTED: ecdysone-induced protein 78C-like [Bombus impatiens]
Length = 413
Score = 318 bits (816), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 161/287 (56%), Positives = 196/287 (68%), Gaps = 56/287 (19%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCL+DG CLVIR++RNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR
Sbjct: 4 KGFFRRSIQKQIEYRCLKDGNCLVIRISRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 63
Query: 63 ERSDSET-----------GSTRVSTTGAE------------------------------- 80
ER +T G ++++
Sbjct: 64 ERGPEDTVPTTTSTTTTTGVQQLTSPAGANNNNNNTNNNNNNTSSQNNNNNSQAQNAIPC 123
Query: 81 -PPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSL 139
PP+++ A ++ D KQL YDVIL VSQAHH++C +TEE TR +VRKP+ +
Sbjct: 124 VPPAAVVEA-------DQSDADVKQLAVYDVILQVSQAHHAHCGFTEESTRGIVRKPMII 176
Query: 140 P------PSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLS 193
P P+ PE ASSTAE ESQR+WLWQQFA +TPSVQRVVEFAKRVPGFCDLS
Sbjct: 177 PASTSSQPASPEDPEAASSTAETVESQRIWLWQQFATRITPSVQRVVEFAKRVPGFCDLS 236
Query: 194 QDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYVTRQQLEVMYD 240
QDDQLILIK+GFFE+W+ ++S++TTDSS+TF DG Y+TRQQ+E+MY+
Sbjct: 237 QDDQLILIKVGFFEVWLSHISKMTTDSSMTFEDGTYITRQQMELMYE 283
>gi|332031103|gb|EGI70680.1| Ecdysone-induced protein 78C [Acromyrmex echinatior]
Length = 399
Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 155/264 (58%), Positives = 188/264 (71%), Gaps = 24/264 (9%)
Query: 1 MFQGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60
+FQGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRD + R
Sbjct: 12 LFQGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDFIFVYAEYDR 71
Query: 61 SR---------ERSDSETGSTRVSTTGAEPP--SSLETAGPVQSLPSS-------TELDT 102
SR +R+ T + T E + ++ + +PS+ ++ D
Sbjct: 72 SRLFDSLCVCRKRAYESTAPLEIQTEFYEIAILAVSDSQNAISRVPSAAVVEADQSDADV 131
Query: 103 KQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLP------PSEVSSPEVASSTAEC 156
KQL YDVI VSQAHH++C +TEE TR L RKP+ +P P+ PE ASSTAE
Sbjct: 132 KQLAVYDVIHQVSQAHHAHCGFTEESTRGLTRKPMIIPASNSSQPASPEDPEAASSTAET 191
Query: 157 HESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL 216
ESQR+WLWQQFA VTPSVQRVVEFAKR+PGFC+LSQDDQLILIK+GFFE+W+ ++S++
Sbjct: 192 VESQRIWLWQQFATRVTPSVQRVVEFAKRMPGFCELSQDDQLILIKVGFFEVWLCHISKM 251
Query: 217 TTDSSLTFSDGMYVTRQQLEVMYD 240
TTD+S+TF DG Y TRQQLE+MY+
Sbjct: 252 TTDNSMTFEDGTYFTRQQLELMYE 275
>gi|241632867|ref|XP_002410392.1| nuclear receptor, putative [Ixodes scapularis]
gi|215503411|gb|EEC12905.1| nuclear receptor, putative [Ixodes scapularis]
Length = 359
Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 153/247 (61%), Positives = 174/247 (70%), Gaps = 22/247 (8%)
Query: 4 GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRE 63
GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRE
Sbjct: 1 GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRE 60
Query: 64 RSDSETGSTRVSTTGAEPPSSLETAG------PVQSLPSSTELDTKQLLTYDVILAVSQA 117
R S++GA P S E G P Q + +L+T+QL YD+IL +SQA
Sbjct: 61 RG---------SSSGAAPLSGDEGGGVASLGSPGQEEQCARDLETQQLAMYDIILTISQA 111
Query: 118 HHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
HH++C YTEE TR L R+P E S + E +L LWQQFA VTPSVQ
Sbjct: 112 HHAHCAYTEEKTRSLARRPAIF---VRGGAEGGPSLPDSPEQSKLGLWQQFATLVTPSVQ 168
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR----LTTDSSLTFSDGMYVTRQ 233
RVVEFAKRVPGF +L QDDQLILIK GFFE+W+ +VSR +LTFSDG Y+ RQ
Sbjct: 169 RVVEFAKRVPGFLELVQDDQLILIKAGFFEVWLVHVSRGVLVGAPHDTLTFSDGTYLIRQ 228
Query: 234 QLEVMYD 240
QLE+M+D
Sbjct: 229 QLELMFD 235
>gi|189235910|ref|XP_966635.2| PREDICTED: similar to GA14768-PA, partial [Tribolium castaneum]
Length = 313
Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 141/208 (67%), Positives = 162/208 (77%), Gaps = 18/208 (8%)
Query: 33 RCQYCRFKKCLAVGMSRDSVRYGRVPKRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQ 92
RCQYCRFKKCL+VGMSRDSVRYGRVPKRSRERS E S+RV+TT A+ S
Sbjct: 1 RCQYCRFKKCLSVGMSRDSVRYGRVPKRSRERSTEE--SSRVTTTDADQSDS-------- 50
Query: 93 SLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASS 152
+TKQL YDVIL VSQAHH+NC YTEE TR LVRKPV +PPS + EVASS
Sbjct: 51 --------ETKQLAVYDVILTVSQAHHANCGYTEEHTRNLVRKPVVVPPSSPADSEVASS 102
Query: 153 TAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGY 212
TAE E +R WLWQQFAA++TPSVQRVVEFAKRVPGFCDL QDDQLILIK+GFFE+W+ +
Sbjct: 103 TAEALEQERCWLWQQFAANITPSVQRVVEFAKRVPGFCDLGQDDQLILIKIGFFEIWLSH 162
Query: 213 VSRLTTDSSLTFSDGMYVTRQQLEVMYD 240
V+RLT+++ + F DG VTRQQLE+MYD
Sbjct: 163 VARLTSNTVMMFDDGTTVTRQQLEIMYD 190
>gi|156556061|emb|CAO79100.1| ecdysone-induced protein 78C [Aedes aegypti]
gi|403182348|gb|EAT48623.2| AAEL000327-PA [Aedes aegypti]
Length = 431
Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 147/263 (55%), Positives = 176/263 (66%), Gaps = 28/263 (10%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPK+SR
Sbjct: 47 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKKSR 106
Query: 63 E------------RSDSETGSTRVSTTGAEP-PS------------SLETAGPVQSLPSS 97
E S + T +++S+ G P P+ S TA LP S
Sbjct: 107 EAGNCAEDMNVCVNSTTPTQVSQLSSCGGTPTPTAPVITMTNCAEISTSTAVVTTILPDS 166
Query: 98 TELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECH 157
+L YD+I V+QAH + YT E + R +SL + + S +
Sbjct: 167 MTFSPPELSIYDIIHCVAQAHRGHSTYTTELVKEQTR--ISLVNYSEKNNLIMQS-LDTI 223
Query: 158 ESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLT 217
E QR+WLWQQ+A +TPSVQRVVEFAKRVPGF + QDDQLILIK+GFFE+W+ +V+R T
Sbjct: 224 EDQRIWLWQQYAMRMTPSVQRVVEFAKRVPGFGEFLQDDQLILIKLGFFEVWLSHVARAT 283
Query: 218 TDSSLTFSDGMYVTRQQLEVMYD 240
DS+LTF DG+YVTRQQLEV+YD
Sbjct: 284 NDSALTFDDGVYVTRQQLEVIYD 306
>gi|345486096|ref|XP_001606191.2| PREDICTED: LOW QUALITY PROTEIN: ecdysone-induced protein 78C,
partial [Nasonia vitripennis]
Length = 391
Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 143/243 (58%), Positives = 166/243 (68%), Gaps = 6/243 (2%)
Query: 4 GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRE 63
GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRE
Sbjct: 1 GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRE 60
Query: 64 RSDSETGSTRVSTTGAEPP------SSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQA 117
R + T +T P SS T G + +T +
Sbjct: 61 RGPDDATPTTTTTPSGGPTTPTTNGSSPATNGVISPQQLATAAANNNNNNNNSSNNXGNG 120
Query: 118 HHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
+ N T + P+ PE ASSTAE ESQR+WLWQQFAA VTPSVQ
Sbjct: 121 TNINNNNTSINNNNNNSTSNNNNPASPEDPEAASSTAETVESQRIWLWQQFAARVTPSVQ 180
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYVTRQQLEV 237
RVVEFAKRVPGF +LSQDDQLILIK+GFFE+W+ +++++T+DSS+TF DG Y+TRQQLE+
Sbjct: 181 RVVEFAKRVPGFIELSQDDQLILIKVGFFEVWLSHIAKMTSDSSMTFEDGTYITRQQLEL 240
Query: 238 MYD 240
MY+
Sbjct: 241 MYE 243
>gi|242010620|ref|XP_002426061.1| Nuclear hormone receptor E75, putative [Pediculus humanus corporis]
gi|212510079|gb|EEB13323.1| Nuclear hormone receptor E75, putative [Pediculus humanus corporis]
Length = 303
Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 132/198 (66%), Positives = 153/198 (77%), Gaps = 22/198 (11%)
Query: 47 MSRDSVRYGRVPKRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLL 106
MSRDSVRYGRVPKRSRERS E +RVST+ AE S DTKQL
Sbjct: 1 MSRDSVRYGRVPKRSRERSTEE--QSRVSTSDAEQSDS----------------DTKQLA 42
Query: 107 TYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPP----SEVSSPEVASSTAECHESQRL 162
YDVIL VSQAHH+NC YTEE TR LVRKP+++PP S PEVASSTAE E +R+
Sbjct: 43 VYDVILTVSQAHHANCGYTEEHTRNLVRKPITIPPLNGSSSTDGPEVASSTAESLEQERI 102
Query: 163 WLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSL 222
WLWQQFA+HVTPSVQRVVEFAKRVPGFCDLSQDDQLILIK+GFFE+W+G+VSR T DSS+
Sbjct: 103 WLWQQFASHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKVGFFEIWLGHVSRQTCDSSM 162
Query: 223 TFSDGMYVTRQQLEVMYD 240
TF+DG Y+T+QQ++++YD
Sbjct: 163 TFTDGTYITKQQMDLIYD 180
>gi|332105458|gb|AEE01362.1| ecdysone-induced protein 78c [Haliotis diversicolor]
Length = 469
Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 137/240 (57%), Positives = 172/240 (71%), Gaps = 23/240 (9%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKC+VIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS+
Sbjct: 118 KGFFRRSIQKQIEYRCLRDGKCMVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSK 177
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
S+ G RVS+T S T L+ KQL YDVIL++SQAHH++C
Sbjct: 178 ----SQDGQ-RVSST--------------DSSQDQTALENKQLAIYDVILSISQAHHTHC 218
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEV-ASSTAECHESQRLWLWQQFAAHVTPSVQRVVE 181
TE+ + + RKP +L ++ PE TAE E+QRL +WQ + +TPS+Q VVE
Sbjct: 219 GLTEDKIKVIQRKPATL-MQQIKIPEQPVQFTAEELEAQRLLMWQHLSTLITPSIQSVVE 277
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTT--DSSLTFSDGMYVTRQQLEVMY 239
FAKRVPGF +LSQDDQLILIK GFFE+W+ ++R+ ++S+TF DG + + +L+V+Y
Sbjct: 278 FAKRVPGFSELSQDDQLILIKTGFFEIWLTRMARMFNKEENSVTFEDGSIIPKDELDVVY 337
>gi|339241333|ref|XP_003376592.1| nuclear hormone receptor E75 [Trichinella spiralis]
gi|316974682|gb|EFV58163.1| nuclear hormone receptor E75 [Trichinella spiralis]
Length = 534
Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 126/243 (51%), Positives = 163/243 (67%), Gaps = 21/243 (8%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKCLV RLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR
Sbjct: 132 KGFFRRSIQKQIEYRCLRDGKCLVYRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 191
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R + RV++ E S ++ E++ QL YD+IL+VSQAHHSNC
Sbjct: 192 DRMQED---VRVTSMTGE--SEVD-----------NEVEKHQLALYDIILSVSQAHHSNC 235
Query: 123 EYTEEGTRRLVRKPVSLPPSE---VSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRV 179
Y E+ R L +P+ P +++ E E Q++ +W+ + ++TP VQRV
Sbjct: 236 NYAEDKVRNLSHRPMHFPIERRFTMTNGERLIPIGNMMEQQKIVMWETLSQYITPEVQRV 295
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTRQQLEV 237
VEFAKR+P F D Q DQL+LIK GFFE+W+ +SR+ ++T DG ++ R QL+V
Sbjct: 296 VEFAKRLPHFTDFLQGDQLVLIKGGFFEVWLIRISRMLNVQFGTMTMCDGSFLGRDQLDV 355
Query: 238 MYD 240
+Y+
Sbjct: 356 IYN 358
>gi|405968018|gb|EKC33126.1| ATP-dependent RNA helicase DDX51 [Crassostrea gigas]
Length = 1179
Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 127/240 (52%), Positives = 163/240 (67%), Gaps = 23/240 (9%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKC+VIRL+RNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS+
Sbjct: 837 KGFFRRSIQKQIEYRCLRDGKCMVIRLSRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSK 896
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ DS ST S + L+ KQL YD+IL +SQAHH+NC
Sbjct: 897 SQDDSCVSST-------------------DSNMDQSALENKQLAIYDIILNISQAHHTNC 937
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEV-ASSTAECHESQRLWLWQQFAAHVTPSVQRVVE 181
TE+ + L RKP SL ++S P + E E+Q+L +W A+ +TP++ VVE
Sbjct: 938 LVTEDRIKNLTRKPSSL-MQQISIPSTPVQFSDEELEAQKLSMWHCLASFITPAINSVVE 996
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLEVMY 239
FAKRV GF +L+QDDQLILIK GFFE+W+ ++R+ + LTF DG + +++L V++
Sbjct: 997 FAKRVTGFPELNQDDQLILIKCGFFEVWLMRMARMFNKAEGCLTFEDGSIIQKEELGVVF 1056
>gi|270004903|gb|EFA01351.1| E78 nuclear receptor [Tribolium castaneum]
Length = 368
Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/190 (65%), Positives = 144/190 (75%), Gaps = 18/190 (9%)
Query: 51 SVRYGRVPKRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDV 110
SVRYGRVPKRSRERS E S+RV+TT A+ S +TKQL YDV
Sbjct: 74 SVRYGRVPKRSRERSTEE--SSRVTTTDADQSDS----------------ETKQLAVYDV 115
Query: 111 ILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAA 170
IL VSQAHH+NC YTEE TR LVRKPV +PPS + EVASSTAE E +R WLWQQFAA
Sbjct: 116 ILTVSQAHHANCGYTEEHTRNLVRKPVVVPPSSPADSEVASSTAEALEQERCWLWQQFAA 175
Query: 171 HVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYV 230
++TPSVQRVVEFAKRVPGFCDL QDDQLILIK+GFFE+W+ +V+RLT+++ + F DG V
Sbjct: 176 NITPSVQRVVEFAKRVPGFCDLGQDDQLILIKIGFFEIWLSHVARLTSNTVMMFDDGTTV 235
Query: 231 TRQQLEVMYD 240
TRQQLE+MYD
Sbjct: 236 TRQQLEIMYD 245
>gi|357609788|gb|EHJ66672.1| ecdysone-induced protein 78C [Danaus plexippus]
Length = 452
Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 124/245 (50%), Positives = 157/245 (64%), Gaps = 16/245 (6%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQ+CRFKKCLAVGMSRDSVRYGRVPKR R
Sbjct: 76 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQFCRFKKCLAVGMSRDSVRYGRVPKRPR 135
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQL---LTYDVILAVSQAHH 119
E SE+ G P+ P S+ E+DT L L D+ V AH
Sbjct: 136 EVVSSESMPDLTKNLGVGTPT------PTSSV---EEMDTDSLQLELARDLAKVVITAHR 186
Query: 120 SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRL----WLWQQFAAHVTPS 175
+N Y+E+ R + K + + + + A C + R LW A +TP+
Sbjct: 187 NNDAYSEDYVRSMHLKAIIVKTEDADNDGNGGEEAACSGAVRANKLTALWYNVAVRMTPT 246
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYVTRQQL 235
VQ+VVEFAKRVPGF L QDDQLILIK+GFFE+W+ + R+++++++ F DG + + QL
Sbjct: 247 VQQVVEFAKRVPGFNVLPQDDQLILIKLGFFEVWLSRMGRISSEATILFDDGNSIDQTQL 306
Query: 236 EVMYD 240
E+MYD
Sbjct: 307 ELMYD 311
>gi|118776358|gb|ABL14196.1| nuclear receptor-like protein [Trichinella spiralis]
Length = 358
Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 117/222 (52%), Positives = 148/222 (66%), Gaps = 24/222 (10%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRD-----SVRYGRV 57
+GFFRRSIQKQIEYRCLRDGKCLV RLNRNRCQYCRFKKCLAVGMSRD +VRYGRV
Sbjct: 150 KGFFRRSIQKQIEYRCLRDGKCLVYRLNRNRCQYCRFKKCLAVGMSRDFAFFSAVRYGRV 209
Query: 58 PKRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQA 117
PKRSR+R + RV++ E S ++ E++ QL YD+IL+VSQA
Sbjct: 210 PKRSRDRMQED---VRVTSMTGE--SEVD-----------NEVEKHQLALYDIILSVSQA 253
Query: 118 HHSNCEYTEEGTRRLVRKPVSLPPSE---VSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
HHSNC Y E+ R L +P+ P +++ E E Q++ +W+ + ++TP
Sbjct: 254 HHSNCNYAEDKVRNLSHRPMHFPIERRFTMTNGERLIPIGNMMEQQKIVMWETLSQYITP 313
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL 216
VQRVVEFAKR+P F D Q DQL+LIK GFFE+W+ +SR+
Sbjct: 314 EVQRVVEFAKRLPHFTDFLQGDQLVLIKGGFFEVWLIRISRM 355
>gi|324507402|gb|ADY43138.1| Nuclear hormone receptor E75 [Ascaris suum]
Length = 631
Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 116/240 (48%), Positives = 155/240 (64%), Gaps = 17/240 (7%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQ+EYRCLRDG+C V RLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR
Sbjct: 261 KGFFRRSIQKQMEYRCLRDGRCQVYRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 320
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E + +E V+ A+ + + +EL+ + +D+IL+VS AH +NC
Sbjct: 321 EGT-TEARDNCVAVIDAD-------------IEAQSELERDKSAIFDIILSVSHAHKANC 366
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVAS-STAECHESQRLWLWQQFAAHVTPSVQRVVE 181
Y EE + + + ++ E ++AE + QR+ +WQ + + P +Q +VE
Sbjct: 367 NYIEEKIKHMQPRAINFNFDRNEMFENGCVNSAEMLDEQRIIMWQTLSGKILPEIQHIVE 426
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTRQQLEVMY 239
FAK +PGF L Q DQ+ LIK GFFE+W+ VSR+ SL +DG V+RQQLE++Y
Sbjct: 427 FAKSIPGFLRLDQSDQVSLIKNGFFEMWLVRVSRVFNGLTGSLMLADGNIVSRQQLEIIY 486
>gi|443732699|gb|ELU17326.1| hypothetical protein CAPTEDRAFT_93472, partial [Capitella teleta]
Length = 392
Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/219 (53%), Positives = 145/219 (66%), Gaps = 15/219 (6%)
Query: 23 KCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRERSDSETGSTRVSTTGAEPP 82
KCLV+RLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR T RVST+G
Sbjct: 35 KCLVMRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR-----STDEQRVSTSG---- 85
Query: 83 SSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPS 142
E++ P S L++KQL YD+IL +SQAHH+NC TE+ + L P SL S
Sbjct: 86 ---ESSSPQASSQEQAVLESKQLAMYDIILTISQAHHANCLTTEDKVKALSTNPTSL-IS 141
Query: 143 EVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIK 202
++ ST E E R ++Q AA VTP + VV FAK+VPG C+LSQDDQLILIK
Sbjct: 142 QLDCSSDLLSTQETVELHRCRMFQNLAAFVTPVINMVVAFAKQVPGMCNLSQDDQLILIK 201
Query: 203 MGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLEVMY 239
GFFE+W+ + R+ + D++LTF DG V R +LE +Y
Sbjct: 202 GGFFEIWLTRMVRMFNSQDNTLTFGDGSLVARAELEAIY 240
>gi|158296072|ref|XP_557244.3| AGAP006571-PA [Anopheles gambiae str. PEST]
gi|157016337|gb|EAL40119.3| AGAP006571-PA [Anopheles gambiae str. PEST]
Length = 652
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 136/356 (38%), Positives = 171/356 (48%), Gaps = 125/356 (35%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFK---------------------- 40
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFK
Sbjct: 178 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSVGMSRDCKYRAWERRIWG 237
Query: 41 ------------KCLAVGMSRD-------------------------SVRYGRVPKRSRE 63
K +A G++ + +VRYGRVPK+SRE
Sbjct: 238 GISEHASGLRMEKNIASGLATNTHSALPKVLMQYSNSKAFAPLPPPTAVRYGRVPKKSRE 297
Query: 64 R-----------------------------------------------SDSETGSTRVST 76
S + G+ +T
Sbjct: 298 AGSCSEENMSICVNSTTPAAGPQHGNGSLGTGHSANGTMPTTTTSTLGSGNNAGNNTSAT 357
Query: 77 TGAE--PPSSLETAGPVQS----------LPSSTELDTKQLLTYDVILAVSQAHHSNCEY 124
G PPSS + LP S +L YD+I ++QAH +C Y
Sbjct: 358 IGHSNGPPSSNASMAANSCAEISTSTGTILPDSLTFTPPELSVYDIIQCIAQAHRGHCTY 417
Query: 125 TEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAK 184
T E + R + L SE +P E E QR+WLWQQ+A +TP+VQR+VEFAK
Sbjct: 418 TSEQVKEQSRVSL-LNYSEKHNP------LESLEDQRIWLWQQYAMRMTPAVQRIVEFAK 470
Query: 185 RVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYVTRQQLEVMYD 240
RVPGF + QDDQLILIK+GFFE+W+ +V+R T DS++TF DG+Y+TRQQLEV+YD
Sbjct: 471 RVPGFGEFLQDDQLILIKLGFFEVWLTHVARATNDSTITFDDGVYITRQQLEVIYD 526
>gi|328785639|ref|XP_396527.4| PREDICTED: ecdysone-induced protein 78C [Apis mellifera]
Length = 375
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 98/149 (65%), Positives = 122/149 (81%), Gaps = 6/149 (4%)
Query: 98 TELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLP------PSEVSSPEVAS 151
++ D KQL YDVIL VSQAHH++C +TEE TR +VRKP+ +P P+ PE AS
Sbjct: 97 SDADVKQLAVYDVILQVSQAHHAHCGFTEESTRGIVRKPMIIPASTSSQPASPEDPEAAS 156
Query: 152 STAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIG 211
STAE ESQR+WLWQQFA +TPSVQRVVEFAK+VPGFCDLSQDDQLILIK+GFFE+W+
Sbjct: 157 STAETVESQRIWLWQQFATRITPSVQRVVEFAKKVPGFCDLSQDDQLILIKVGFFEVWLS 216
Query: 212 YVSRLTTDSSLTFSDGMYVTRQQLEVMYD 240
++S++TTDSS+TF DG Y+TRQQ+E+MY+
Sbjct: 217 HISKMTTDSSMTFEDGTYITRQQMELMYE 245
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/23 (82%), Positives = 20/23 (86%)
Query: 47 MSRDSVRYGRVPKRSRERSDSET 69
MSRDSVRYGRVPKRSRER +T
Sbjct: 1 MSRDSVRYGRVPKRSRERGPEDT 23
>gi|307188184|gb|EFN73016.1| Ecdysone-induced protein 78C [Camponotus floridanus]
Length = 371
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 97/149 (65%), Positives = 118/149 (79%), Gaps = 6/149 (4%)
Query: 98 TELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLP------PSEVSSPEVAS 151
++ D KQL YDVI VSQAHH++C +TEE TR L RKP+ +P P+ PE AS
Sbjct: 100 SDADVKQLAVYDVIHQVSQAHHAHCGFTEESTRGLTRKPMIIPASNSSQPASPEDPEAAS 159
Query: 152 STAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIG 211
STAE ESQR+WLWQQFA VTPSVQRVVEFAKR PGFC+LSQDDQLILIK+GFFE+W+
Sbjct: 160 STAETVESQRIWLWQQFATRVTPSVQRVVEFAKRTPGFCELSQDDQLILIKVGFFEVWLC 219
Query: 212 YVSRLTTDSSLTFSDGMYVTRQQLEVMYD 240
++S++TTD+S+TF DG Y TRQQLE+MY+
Sbjct: 220 HISKMTTDNSMTFEDGTYFTRQQLELMYE 248
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/18 (100%), Positives = 18/18 (100%)
Query: 47 MSRDSVRYGRVPKRSRER 64
MSRDSVRYGRVPKRSRER
Sbjct: 1 MSRDSVRYGRVPKRSRER 18
>gi|307200344|gb|EFN80598.1| Ecdysone-induced protein 78C [Harpegnathos saltator]
Length = 382
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 92/143 (64%), Positives = 116/143 (81%), Gaps = 6/143 (4%)
Query: 104 QLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLP------PSEVSSPEVASSTAECH 157
++ YD+IL VSQAH ++C +TE+ R LVRKP+ +P P+ PE ASSTAE
Sbjct: 113 KMAVYDLILQVSQAHQAHCGFTEDSVRGLVRKPMIIPASNSSQPASPEDPEAASSTAETV 172
Query: 158 ESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLT 217
ESQR+WLWQQFA VTPSVQRVVEFAKRVPGFC+LSQDDQLILIK+GFFE+W+ ++S++T
Sbjct: 173 ESQRIWLWQQFAVRVTPSVQRVVEFAKRVPGFCELSQDDQLILIKVGFFEVWLSHISKMT 232
Query: 218 TDSSLTFSDGMYVTRQQLEVMYD 240
TDSS+TF DG Y+TRQQ+E+MY+
Sbjct: 233 TDSSMTFEDGTYITRQQMELMYE 255
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/18 (100%), Positives = 18/18 (100%)
Query: 47 MSRDSVRYGRVPKRSRER 64
MSRDSVRYGRVPKRSRER
Sbjct: 1 MSRDSVRYGRVPKRSRER 18
>gi|167650894|gb|AAR30507.2| ecdysone-induced protein E78 [Schistosoma mansoni]
gi|350646273|emb|CCD58999.1| nuclear hormone receptor superfamily protein-related [Schistosoma
mansoni]
Length = 1087
Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 115/285 (40%), Positives = 161/285 (56%), Gaps = 57/285 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEY+CLRDGKCLVIRLNRNRCQYCRF+KCLA GMS+DSVRYGR+P+R+R
Sbjct: 310 KGFFRRSIQKQIEYKCLRDGKCLVIRLNRNRCQYCRFRKCLAAGMSKDSVRYGRMPRRTR 369
Query: 63 E--------------RSDSETGSTRVSTTGAE----------PPS-SLETAGPVQSLPSS 97
+ +S T S R+ +T PPS + E +G + ++
Sbjct: 370 GSDCGRDGSDQLMSMQHNSSTNSVRIDSTIGNGSGHVSAFIPPPSCTSELSGNSAVVGAA 429
Query: 98 ------------------TELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSL 139
+ L Y+ IL +SQA+ + YT+E + + +P++L
Sbjct: 430 VATTTTTTNMTTGRYGVCSRPGNDHLGLYETILTISQAYQNFSPYTDEKIKVMRCRPITL 489
Query: 140 PPSEVSS---PEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDD 196
S V+ PE + RL + ++ + + P +Q VVEFAKR+P F L Q D
Sbjct: 490 --SNVTREFWPEKV-------DEHRLRMHEELSQLLAPCIQHVVEFAKRIPEFSSLGQPD 540
Query: 197 QLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLEVMY 239
QL+LIK FFE+W+ SRL T D +T +DG +T+Q+L+ +Y
Sbjct: 541 QLVLIKAAFFEVWLVQASRLISTNDRKITLADGKQITKQELDFIY 585
>gi|195428126|ref|XP_002062125.1| GK16819 [Drosophila willistoni]
gi|194158210|gb|EDW73111.1| GK16819 [Drosophila willistoni]
Length = 1021
Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 84/138 (60%), Positives = 109/138 (78%), Gaps = 5/138 (3%)
Query: 103 KQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRL 162
+L YDVI+ VSQAH NC YTEE TR L+R+PV++P + + A++ AE E Q++
Sbjct: 764 NELTVYDVIMCVSQAHRLNCSYTEELTRELMRRPVTVPQNGI-----ATTVAESLEFQKI 818
Query: 163 WLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSL 222
WLWQQF+A VTP VQR+VEFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL D++L
Sbjct: 819 WLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINDTTL 878
Query: 223 TFSDGMYVTRQQLEVMYD 240
T DG Y+TRQQLE++YD
Sbjct: 879 TLDDGAYLTRQQLEILYD 896
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/61 (95%), Positives = 60/61 (98%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCL+ GMSRDSVRYGRVPKRSR
Sbjct: 494 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMSRDSVRYGRVPKRSR 553
Query: 63 E 63
E
Sbjct: 554 E 554
>gi|308818236|gb|ADO51078.1| MIP25931p [Drosophila melanogaster]
Length = 313
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/139 (60%), Positives = 109/139 (78%), Gaps = 5/139 (3%)
Query: 102 TKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQR 161
+L YDVI+ VSQAH NC YTEE TR L+R+PV++P + + AS+ AE E Q+
Sbjct: 80 ANELTVYDVIMCVSQAHRLNCSYTEELTRELMRRPVTVPQNGI-----ASTVAESLEFQK 134
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS 221
+WLWQQF+A VTP VQR+VEFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL +++
Sbjct: 135 IWLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEAT 194
Query: 222 LTFSDGMYVTRQQLEVMYD 240
LT DG Y+TRQQLE++YD
Sbjct: 195 LTLDDGAYLTRQQLEILYD 213
>gi|34223729|sp|P45447.3|E78C_DROME RecName: Full=Ecdysone-induced protein 78C; Short=DR-78; AltName:
Full=Nuclear receptor subfamily 1 group E member 1
Length = 866
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/139 (60%), Positives = 109/139 (78%), Gaps = 5/139 (3%)
Query: 102 TKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQR 161
+L YDVI+ VSQAH NC YTEE TR L+R+PV++P + + AS+ AE E Q+
Sbjct: 608 ANELTVYDVIMCVSQAHRLNCSYTEELTRELMRRPVTVPQNGI-----ASTVAESLEFQK 662
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS 221
+WLWQQF+A VTP VQR+VEFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL +++
Sbjct: 663 IWLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEAT 722
Query: 222 LTFSDGMYVTRQQLEVMYD 240
LT DG Y+TRQQLE++YD
Sbjct: 723 LTLDDGAYLTRQQLEILYD 741
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/61 (95%), Positives = 60/61 (98%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCL+ GMSRDSVRYGRVPKRSR
Sbjct: 388 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMSRDSVRYGRVPKRSR 447
Query: 63 E 63
E
Sbjct: 448 E 448
>gi|7769648|gb|AAF69494.1| nuclear receptor E78A [Drosophila melanogaster]
Length = 866
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/139 (60%), Positives = 109/139 (78%), Gaps = 5/139 (3%)
Query: 102 TKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQR 161
+L YDVI+ VSQAH NC YTEE TR L+R+PV++P + + AS+ AE E Q+
Sbjct: 608 ANELTVYDVIMCVSQAHRLNCSYTEELTRELMRRPVTVPQNGI-----ASTVAESLEFQK 662
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS 221
+WLWQQF+A VTP VQR+VEFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL +++
Sbjct: 663 IWLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEAT 722
Query: 222 LTFSDGMYVTRQQLEVMYD 240
LT DG Y+TRQQLE++YD
Sbjct: 723 LTLDDGAYLTRQQLEILYD 741
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/61 (95%), Positives = 60/61 (98%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCL+ GMSRDSVRYGRVPKRSR
Sbjct: 388 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMSRDSVRYGRVPKRSR 447
Query: 63 E 63
E
Sbjct: 448 E 448
>gi|24667937|ref|NP_524195.2| Ecdysone-induced protein 78C, isoform A [Drosophila melanogaster]
gi|386771542|ref|NP_001246862.1| Ecdysone-induced protein 78C, isoform D [Drosophila melanogaster]
gi|386771544|ref|NP_001246863.1| Ecdysone-induced protein 78C, isoform E [Drosophila melanogaster]
gi|23094217|gb|AAF51692.2| Ecdysone-induced protein 78C, isoform A [Drosophila melanogaster]
gi|383292049|gb|AFH04533.1| Ecdysone-induced protein 78C, isoform D [Drosophila melanogaster]
gi|383292050|gb|AFH04534.1| Ecdysone-induced protein 78C, isoform E [Drosophila melanogaster]
Length = 862
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/139 (60%), Positives = 109/139 (78%), Gaps = 5/139 (3%)
Query: 102 TKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQR 161
+L YDVI+ VSQAH NC YTEE TR L+R+PV++P + + AS+ AE E Q+
Sbjct: 604 ANELTVYDVIMCVSQAHRLNCSYTEELTRELMRRPVTVPQNGI-----ASTVAESLEFQK 658
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS 221
+WLWQQF+A VTP VQR+VEFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL +++
Sbjct: 659 IWLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEAT 718
Query: 222 LTFSDGMYVTRQQLEVMYD 240
LT DG Y+TRQQLE++YD
Sbjct: 719 LTLDDGAYLTRQQLEILYD 737
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/61 (95%), Positives = 60/61 (98%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCL+ GMSRDSVRYGRVPKRSR
Sbjct: 384 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMSRDSVRYGRVPKRSR 443
Query: 63 E 63
E
Sbjct: 444 E 444
>gi|195592082|ref|XP_002085765.1| GD14945 [Drosophila simulans]
gi|194197774|gb|EDX11350.1| GD14945 [Drosophila simulans]
Length = 427
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/139 (60%), Positives = 109/139 (78%), Gaps = 5/139 (3%)
Query: 102 TKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQR 161
+L YDVI+ VSQAH NC YTEE TR L+R+PV++P + + AS+ AE E Q+
Sbjct: 169 ANELTVYDVIMCVSQAHRLNCSYTEELTRELMRRPVTVPQNGI-----ASTVAESLEFQK 223
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS 221
+WLWQQF+A VTP VQR+VEFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL +++
Sbjct: 224 IWLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEAT 283
Query: 222 LTFSDGMYVTRQQLEVMYD 240
LT DG Y+TRQQLE++YD
Sbjct: 284 LTLDDGAYLTRQQLEILYD 302
>gi|2243140|emb|CAA67384.1| nuclear hormone receptor [Drosophila melanogaster]
Length = 865
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/139 (60%), Positives = 109/139 (78%), Gaps = 5/139 (3%)
Query: 102 TKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQR 161
+L YDVI+ VSQAH NC YTEE TR L+R+PV++P + + AS+ AE E Q+
Sbjct: 607 ANELTVYDVIMCVSQAHRLNCSYTEELTRELMRRPVTVPQNGI-----ASTVAESLEFQK 661
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS 221
+WLWQQF+A VTP VQR+VEFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL +++
Sbjct: 662 IWLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEAT 721
Query: 222 LTFSDGMYVTRQQLEVMYD 240
LT DG Y+TRQQLE++YD
Sbjct: 722 LTLDDGAYLTRQQLEILYD 740
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/61 (95%), Positives = 60/61 (98%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCL+ GMSRDSVRYGRVPKRSR
Sbjct: 388 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMSRDSVRYGRVPKRSR 447
Query: 63 E 63
E
Sbjct: 448 E 448
>gi|195495655|ref|XP_002095359.1| GE19737 [Drosophila yakuba]
gi|194181460|gb|EDW95071.1| GE19737 [Drosophila yakuba]
Length = 876
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/139 (60%), Positives = 109/139 (78%), Gaps = 5/139 (3%)
Query: 102 TKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQR 161
+L YDVI+ VSQAH NC YTEE TR L+R+PV++P + + AS+ AE E Q+
Sbjct: 618 ANELTVYDVIMCVSQAHRLNCSYTEELTRELMRRPVTVPQNGI-----ASTVAESLEFQK 672
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS 221
+WLWQQF+A VTP VQR+VEFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL +++
Sbjct: 673 IWLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEAT 732
Query: 222 LTFSDGMYVTRQQLEVMYD 240
LT DG Y+TRQQLE++YD
Sbjct: 733 LTLDDGAYLTRQQLEILYD 751
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/61 (95%), Positives = 60/61 (98%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCL+ GMSRDSVRYGRVPKRSR
Sbjct: 399 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMSRDSVRYGRVPKRSR 458
Query: 63 E 63
E
Sbjct: 459 E 459
>gi|194875414|ref|XP_001973593.1| GG16168 [Drosophila erecta]
gi|190655376|gb|EDV52619.1| GG16168 [Drosophila erecta]
Length = 863
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/139 (60%), Positives = 109/139 (78%), Gaps = 5/139 (3%)
Query: 102 TKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQR 161
+L YDVI+ VSQAH NC YTEE TR L+R+PV++P + + AS+ AE E Q+
Sbjct: 605 ANELTVYDVIMCVSQAHRLNCSYTEELTRELMRRPVTVPQNGI-----ASTVAESLEFQK 659
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS 221
+WLWQQF+A VTP VQR+VEFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL +++
Sbjct: 660 IWLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEAT 719
Query: 222 LTFSDGMYVTRQQLEVMYD 240
LT DG Y+TRQQLE++YD
Sbjct: 720 LTLDDGAYLTRQQLEILYD 738
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/61 (95%), Positives = 60/61 (98%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCL+ GMSRDSVRYGRVPKRSR
Sbjct: 379 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMSRDSVRYGRVPKRSR 438
Query: 63 E 63
E
Sbjct: 439 E 439
>gi|7769650|gb|AAF69495.1|AF238309_1 nuclear receptor E78B [Drosophila melanogaster]
Length = 385
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/139 (60%), Positives = 109/139 (78%), Gaps = 5/139 (3%)
Query: 102 TKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQR 161
+L YDVI+ VSQAH NC YTEE TR L+R+PV++P + + AS+ AE E Q+
Sbjct: 127 ANELTVYDVIMCVSQAHRLNCSYTEELTRELMRRPVTVPQNGI-----ASTVAESLEFQK 181
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS 221
+WLWQQF+A VTP VQR+VEFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL +++
Sbjct: 182 IWLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEAT 241
Query: 222 LTFSDGMYVTRQQLEVMYD 240
LT DG Y+TRQQLE++YD
Sbjct: 242 LTLDDGAYLTRQQLEILYD 260
>gi|56411840|ref|NP_730609.3| Ecdysone-induced protein 78C, isoform B [Drosophila melanogaster]
gi|55380524|gb|AAN12161.3| Ecdysone-induced protein 78C, isoform B [Drosophila melanogaster]
Length = 392
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/139 (60%), Positives = 109/139 (78%), Gaps = 5/139 (3%)
Query: 102 TKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQR 161
+L YDVI+ VSQAH NC YTEE TR L+R+PV++P + + AS+ AE E Q+
Sbjct: 134 ANELTVYDVIMCVSQAHRLNCSYTEELTRELMRRPVTVPQNGI-----ASTVAESLEFQK 188
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS 221
+WLWQQF+A VTP VQR+VEFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL +++
Sbjct: 189 IWLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEAT 248
Query: 222 LTFSDGMYVTRQQLEVMYD 240
LT DG Y+TRQQLE++YD
Sbjct: 249 LTLDDGAYLTRQQLEILYD 267
>gi|195170936|ref|XP_002026267.1| GL24673 [Drosophila persimilis]
gi|194111162|gb|EDW33205.1| GL24673 [Drosophila persimilis]
Length = 443
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/138 (60%), Positives = 109/138 (78%), Gaps = 5/138 (3%)
Query: 103 KQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRL 162
+L YDVI+ VSQAH NC YTEE TR L+R+PV++P + + A++ AE E Q++
Sbjct: 186 NELTVYDVIVCVSQAHRLNCSYTEELTRELMRRPVTVPQNGI-----ATTVAESLEFQKI 240
Query: 163 WLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSL 222
WLWQQF+A VTP VQR+VEFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL D++L
Sbjct: 241 WLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINDTTL 300
Query: 223 TFSDGMYVTRQQLEVMYD 240
T DG Y+TRQQLE++YD
Sbjct: 301 TLDDGAYLTRQQLEILYD 318
>gi|195348475|ref|XP_002040774.1| GM22351 [Drosophila sechellia]
gi|194122284|gb|EDW44327.1| GM22351 [Drosophila sechellia]
Length = 986
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/139 (60%), Positives = 109/139 (78%), Gaps = 5/139 (3%)
Query: 102 TKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQR 161
+L YDVI+ VSQAH NC YTEE TR L+R+PV++P + + AS+ AE E Q+
Sbjct: 728 ANELTVYDVIMCVSQAHRLNCSYTEELTRELMRRPVTVPQNGI-----ASTVAESLEFQK 782
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS 221
+WLWQQF+A VTP VQR+VEFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL +++
Sbjct: 783 IWLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEAT 842
Query: 222 LTFSDGMYVTRQQLEVMYD 240
LT DG Y+TRQQLE++YD
Sbjct: 843 LTLDDGAYLTRQQLEILYD 861
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/61 (95%), Positives = 60/61 (98%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCL+ GMSRDSVRYGRVPKRSR
Sbjct: 514 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMSRDSVRYGRVPKRSR 573
Query: 63 E 63
E
Sbjct: 574 E 574
>gi|2243142|emb|CAA67385.1| nuclear hormone receptor [Drosophila melanogaster]
Length = 391
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/139 (60%), Positives = 109/139 (78%), Gaps = 5/139 (3%)
Query: 102 TKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQR 161
+L YDVI+ VSQAH NC YTEE TR L+R+PV++P + + AS+ AE E Q+
Sbjct: 133 ANELTVYDVIMCVSQAHRLNCSYTEELTRELMRRPVTVPQNGI-----ASTVAESLEFQK 187
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS 221
+WLWQQF+A VTP VQR+VEFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL +++
Sbjct: 188 IWLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEAT 247
Query: 222 LTFSDGMYVTRQQLEVMYD 240
LT DG Y+TRQQLE++YD
Sbjct: 248 LTLDDGAYLTRQQLEILYD 266
>gi|198466632|ref|XP_001354071.2| GA14768 [Drosophila pseudoobscura pseudoobscura]
gi|198150690|gb|EAL29809.2| GA14768 [Drosophila pseudoobscura pseudoobscura]
Length = 897
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/139 (60%), Positives = 109/139 (78%), Gaps = 5/139 (3%)
Query: 102 TKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQR 161
+L YDVI+ VSQAH NC YTEE TR L+R+PV++P + + A++ AE E Q+
Sbjct: 639 ANELTVYDVIVCVSQAHRLNCSYTEELTRELMRRPVTVPQNGI-----ATTVAESLEFQK 693
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS 221
+WLWQQF+A VTP VQR+VEFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL D++
Sbjct: 694 IWLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINDTT 753
Query: 222 LTFSDGMYVTRQQLEVMYD 240
LT DG Y+TRQQLE++YD
Sbjct: 754 LTLDDGAYLTRQQLEILYD 772
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/61 (95%), Positives = 60/61 (98%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCL+ GMSRDSVRYGRVPKRSR
Sbjct: 428 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMSRDSVRYGRVPKRSR 487
Query: 63 E 63
E
Sbjct: 488 E 488
>gi|195379022|ref|XP_002048280.1| GJ13881 [Drosophila virilis]
gi|194155438|gb|EDW70622.1| GJ13881 [Drosophila virilis]
Length = 424
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/138 (60%), Positives = 108/138 (78%), Gaps = 5/138 (3%)
Query: 103 KQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRL 162
+L YDVI+ VSQAH NC YTEE TR L+R+PV++P + + ++ AE E Q++
Sbjct: 167 NELTVYDVIMCVSQAHRLNCSYTEELTRELMRRPVTVPQNGI-----VTTVAESLEFQKI 221
Query: 163 WLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSL 222
WLWQQF+A VTP VQR+VEFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL D++L
Sbjct: 222 WLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINDTTL 281
Query: 223 TFSDGMYVTRQQLEVMYD 240
T DG Y+TRQQLE++YD
Sbjct: 282 TLDDGAYLTRQQLEILYD 299
>gi|195126627|ref|XP_002007772.1| GI13134 [Drosophila mojavensis]
gi|193919381|gb|EDW18248.1| GI13134 [Drosophila mojavensis]
Length = 569
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 83/139 (59%), Positives = 108/139 (77%), Gaps = 5/139 (3%)
Query: 102 TKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQR 161
+L YDVI+ VSQAH NC YTEE TR L+R+PV++P + + ++ AE E Q+
Sbjct: 311 ANELTVYDVIMCVSQAHRLNCSYTEELTRELMRRPVTVPQNGI-----VTTVAESLEFQK 365
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS 221
+WLWQQF+A VTP VQR+VEFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL D++
Sbjct: 366 IWLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINDTT 425
Query: 222 LTFSDGMYVTRQQLEVMYD 240
LT DG Y+TRQQLE++YD
Sbjct: 426 LTLDDGAYLTRQQLEILYD 444
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/61 (95%), Positives = 60/61 (98%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCL+ GMSRDSVRYGRVPKRSR
Sbjct: 100 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMSRDSVRYGRVPKRSR 159
Query: 63 E 63
E
Sbjct: 160 E 160
>gi|195017101|ref|XP_001984538.1| GH14972 [Drosophila grimshawi]
gi|193898020|gb|EDV96886.1| GH14972 [Drosophila grimshawi]
Length = 904
Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 83/139 (59%), Positives = 108/139 (77%), Gaps = 5/139 (3%)
Query: 102 TKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQR 161
+L YDVI+ VSQAH NC YTEE TR L+R+PV++P + + ++ AE E Q+
Sbjct: 646 ANELTVYDVIMCVSQAHRLNCSYTEELTRELMRRPVTVPQNGI-----VTTVAESLEFQK 700
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS 221
+WLWQQF+A VTP VQR+VEFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL D++
Sbjct: 701 IWLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINDTT 760
Query: 222 LTFSDGMYVTRQQLEVMYD 240
LT DG Y+TRQQLE++YD
Sbjct: 761 LTLDDGAYLTRQQLEILYD 779
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/61 (95%), Positives = 60/61 (98%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCL+ GMSRDSVRYGRVPKRSR
Sbjct: 421 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMSRDSVRYGRVPKRSR 480
Query: 63 E 63
E
Sbjct: 481 E 481
>gi|195066261|ref|XP_001996790.1| GH12165 [Drosophila grimshawi]
gi|193899800|gb|EDV98666.1| GH12165 [Drosophila grimshawi]
Length = 560
Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 83/139 (59%), Positives = 108/139 (77%), Gaps = 5/139 (3%)
Query: 102 TKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQR 161
+L YDVI+ VSQAH NC YTEE TR L+R+PV++P + + ++ AE E Q+
Sbjct: 302 ANELTVYDVIMCVSQAHRLNCSYTEELTRELMRRPVTVPQNGI-----VTTVAESLEFQK 356
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS 221
+WLWQQF+A VTP VQR+VEFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL D++
Sbjct: 357 IWLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINDTT 416
Query: 222 LTFSDGMYVTRQQLEVMYD 240
LT DG Y+TRQQLE++YD
Sbjct: 417 LTLDDGAYLTRQQLEILYD 435
>gi|194749053|ref|XP_001956954.1| GF24303 [Drosophila ananassae]
gi|190624236|gb|EDV39760.1| GF24303 [Drosophila ananassae]
Length = 892
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 82/139 (58%), Positives = 108/139 (77%), Gaps = 5/139 (3%)
Query: 102 TKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQR 161
+L YDVI+ VSQAH NC YTEE TR L+R+PV++P + + A++ AE E Q+
Sbjct: 634 ANELTVYDVIMCVSQAHRLNCSYTEELTRELMRRPVTVPQNGI-----ATTVAESLEFQK 688
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS 221
+WLWQQF+A VTP VQR+VEFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL +++
Sbjct: 689 IWLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEAT 748
Query: 222 LTFSDGMYVTRQQLEVMYD 240
LT DG Y+T QQLE++YD
Sbjct: 749 LTLDDGAYLTCQQLEILYD 767
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/61 (95%), Positives = 60/61 (98%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCL+ GMSRDSVRYGRVPKRSR
Sbjct: 427 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMSRDSVRYGRVPKRSR 486
Query: 63 E 63
E
Sbjct: 487 E 487
>gi|14133778|gb|AAK54129.1|AF367208_1 nuclear receptor nhr-7C [Dirofilaria immitis]
Length = 463
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 132/239 (55%), Gaps = 32/239 (13%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQ+EYRCLRDGKC + RLNRNRCQ+CRF+KCLAVGMSRDSVRYGR P+R
Sbjct: 184 KGFFRRSIQKQMEYRCLRDGKCHIHRLNRNRCQFCRFRKCLAVGMSRDSVRYGRTPRRKG 243
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ +D+E PS ET+ D + I +V++AH + C
Sbjct: 244 DETDNE-----------NVPSWEETS----KFTHYEIADIANSRLRNFIESVAEAHTTCC 288
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + L E +S + + R LW + + R +EF
Sbjct: 289 SYMTADVKDL---------------EPRTSNTKSPNANRYQLWHSLNEAMFEDLGRFIEF 333
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTRQQLEVMY 239
KR+PGF ++S DQL+ +K FFE+W+ ++S ++TFS G+ +R+QL ++Y
Sbjct: 334 TKRIPGFVNISHKDQLLAVKTAFFEVWLVWISHTMNSKTGTITFSHGISFSREQLSIIY 392
>gi|14133772|gb|AAK54127.1|AF367206_1 nuclear receptor nhr-7A [Dirofilaria immitis]
Length = 556
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 133/239 (55%), Gaps = 28/239 (11%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQ+EYRCLRDGKC + RLNRNRCQ+CRF+KCLAVGMSRDSVRYGR P+R
Sbjct: 184 KGFFRRSIQKQMEYRCLRDGKCHIHRLNRNRCQFCRFRKCLAVGMSRDSVRYGRTPRRKG 243
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ +D+E PS ET+ D + I +V++AH + C
Sbjct: 244 DETDNENV-----------PSWEETS----KFTHYEIADIANSRLRNFIESVAEAHTTCC 288
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + L + + +S + + R LW + + R +EF
Sbjct: 289 SYMTADVKDLEPRVIHY-----------TSNTKSPNANRYQLWHSLNEAMFEDLGRFIEF 337
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTRQQLEVMY 239
KR+PGF ++S DQL+ +K FFE+W+ ++S ++TFS G+ +R+QL ++Y
Sbjct: 338 TKRIPGFVNISHKDQLLAVKTAFFEVWLVWISHTMNSKTGTITFSHGISFSREQLSIIY 396
>gi|6318676|gb|AAF06997.1|AF170551_1 nuclear hormone receptor [Onchocerca volvulus]
Length = 555
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 135/239 (56%), Gaps = 28/239 (11%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQ+Q+EYRCLRDGKC + RLNRNRCQ+CRF+KCLAVGMSRDSVRYGR P+R
Sbjct: 183 KGFFRRSIQEQMEYRCLRDGKCHIHRLNRNRCQFCRFRKCLAVGMSRDSVRYGRTPRRKG 242
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ D+E PS ET+ + +L ++ I +V+ AH + C
Sbjct: 243 DEVDNE-----------NVPSWEETSKLTHY--EVANIANARLRSF--IESVTDAHMTCC 287
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + L P P S +A H+ LW + + R +EF
Sbjct: 288 NYMSTNLKDLE------PRVAHHLPNTKSLSANRHQ-----LWHSINEAMFEDLGRFIEF 336
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTRQQLEVMY 239
AKR+PGF ++S DQL+ +K F E+W+ ++SR +LTFS G+ +++QL ++Y
Sbjct: 337 AKRIPGFMNISHKDQLLAVKTAFSEVWLVWISRTMNSKTGTLTFSHGITFSQEQLSIVY 395
>gi|170589617|ref|XP_001899570.1| nuclear hormone receptor [Brugia malayi]
gi|158593783|gb|EDP32378.1| nuclear hormone receptor, putative [Brugia malayi]
Length = 555
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 134/240 (55%), Gaps = 30/240 (12%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQ+EYRCLRDGKC + RLNRNRCQ+CRF+KCLAVGMSRDSVRYGR P+
Sbjct: 183 KGFFRRSIQKQMEYRCLRDGKCHIHRLNRNRCQFCRFRKCLAVGMSRDSVRYGRTPRHKG 242
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ D+E T+ + E A D + I +V++AH + C
Sbjct: 243 DEIDNENIPLWEETSKF---THYEVA------------DVTNARLQNFIESVTKAHLTCC 287
Query: 123 EYTEEGTRRLVRKPVS-LPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVE 181
Y + L + LP +++ S + R LW + + R +E
Sbjct: 288 NYVPSTLKDLKPGVIHRLPHTKLPS------------ANRQHLWHSMNEALFEDLGRFIE 335
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTRQQLEVMY 239
F+KR+PGF +S DQ++ +K FFE+W+ ++SR +LTFS G+ +R+QL ++Y
Sbjct: 336 FSKRIPGFITISHKDQILAVKTAFFEVWLVWISRTMNSKTGTLTFSHGITFSREQLSIVY 395
>gi|393908770|gb|EJD75201.1| nuclear receptor subfamily 1 group D member 1 [Loa loa]
Length = 554
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 134/239 (56%), Gaps = 29/239 (12%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQ+EYRCLRDGKC + RLNRNRCQ+CRF+KCLAVGMSRDSVRYGR P+R
Sbjct: 183 KGFFRRSIQKQMEYRCLRDGKCHIHRLNRNRCQFCRFRKCLAVGMSRDSVRYGRTPRRKG 242
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ D+E PS E + + K+L T+ I V+ AH + C
Sbjct: 243 DEIDNEN-----------IPSWEEISKFTHYEVADV---AKRLRTF--IEKVTAAHLTCC 286
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + L + + S SP + R LW + + R +EF
Sbjct: 287 NYLPSTLKDLEPRIIR-DLSNTKSPS----------TNRNQLWHSMNGALFEDLGRFIEF 335
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTRQQLEVMY 239
AKR+PGF +S DQ++ +K FFE+W+ ++SR +LTFS G+ +++QL ++Y
Sbjct: 336 AKRIPGFISISHRDQILAVKTSFFEVWLVWISRAMNSRMGTLTFSHGITFSQEQLSIIY 394
>gi|7144508|gb|AAA19976.2| truncated nuclear hormone receptor superfamily protein [Drosophila
melanogaster]
Length = 390
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/120 (60%), Positives = 96/120 (80%), Gaps = 6/120 (5%)
Query: 121 NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVV 180
NC YTEE TR L+R+PV++P + + AS+ AE E Q++WLWQQF+A VTP VQR+V
Sbjct: 152 NCSYTEELTRELMRRPVTVPQNGI-----ASTVAESLEFQKIWLWQQFSARVTPGVQRIV 206
Query: 181 EFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYVTRQQLEVMYD 240
EFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL +++LT DG Y+TR QLE++YD
Sbjct: 207 EFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLDDGAYLTR-QLEILYD 265
>gi|514833|gb|AAA19975.1| nuclear hormone receptor superfamily protein [Drosophila
melanogaster]
Length = 864
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/120 (60%), Positives = 96/120 (80%), Gaps = 6/120 (5%)
Query: 121 NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVV 180
NC YTEE TR L+R+PV++P + + AS+ AE E Q++WLWQQF+A VTP VQR+V
Sbjct: 626 NCSYTEELTRELMRRPVTVPQNGI-----ASTVAESLEFQKIWLWQQFSARVTPGVQRIV 680
Query: 181 EFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYVTRQQLEVMYD 240
EFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL +++LT DG Y+TR QLE++YD
Sbjct: 681 EFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLDDGAYLTR-QLEILYD 739
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/61 (95%), Positives = 60/61 (98%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCL+ GMSRDSVRYGRVPKRSR
Sbjct: 388 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMSRDSVRYGRVPKRSR 447
Query: 63 E 63
E
Sbjct: 448 E 448
>gi|260807677|ref|XP_002598635.1| hypothetical protein BRAFLDRAFT_67032 [Branchiostoma floridae]
gi|229283908|gb|EEN54647.1| hypothetical protein BRAFLDRAFT_67032 [Branchiostoma floridae]
Length = 566
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 138/250 (55%), Gaps = 44/250 (17%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+Y+ C ++ KC ++R+NRNRCQ+CR KKCLAVGMSRD+VR+GRVPKR
Sbjct: 39 KGFFRRSIQQKIQYKQCTKNEKCSIMRVNRNRCQHCRLKKCLAVGMSRDAVRFGRVPKRE 98
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R +E + + T +S E A E+D +V + +++AHH
Sbjct: 99 KARLLAELQNLKNQTESELKVTSSEEA----------EVD-------EVAMVIAKAHHQT 141
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWL--------------WQQ 167
C YT E L + P VA + H S L W++
Sbjct: 142 CSYTRE----------KLAAMKTIQPIVAQNLPNLHMSMVCPLNPFPIGALEGANKMWEE 191
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS--LTFS 225
F+ TP+++ VVEFAKR+PGF L+Q DQ+ L+K G FE+ + + + S +TF
Sbjct: 192 FSERFTPAIKEVVEFAKRIPGFQQLNQTDQITLLKAGCFEVLLVRLCPMFDCKSDMMTFV 251
Query: 226 DGMYVTRQQL 235
+G+ + R QL
Sbjct: 252 NGVRIQRSQL 261
>gi|14133775|gb|AAK54128.1|AF367207_1 nuclear receptor nhr-7B [Dirofilaria immitis]
Length = 358
Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 125/228 (54%), Gaps = 32/228 (14%)
Query: 14 IEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRERSDSETGSTR 73
+EYRCLRDGKC + RLNRNRCQ+CRF+KCLAVGMSRDSVRYGR P+R + +D+E
Sbjct: 1 MEYRCLRDGKCHIHRLNRNRCQFCRFRKCLAVGMSRDSVRYGRTPRRKGDETDNEN---- 56
Query: 74 VSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLV 133
PS ET+ ++ +L + I +V++AH + C Y
Sbjct: 57 -------VPSWEETSKFTHY--EIADIANSRLRNF--IESVAEAHTTCCSYM-------- 97
Query: 134 RKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLS 193
++V E +S + + R LW + + R +EF KR+PGF ++S
Sbjct: 98 -------TADVKDLEPRTSNTKSPNANRYQLWHSLNEAMFEDLGRFIEFTKRIPGFVNIS 150
Query: 194 QDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTRQQLEVMY 239
DQL+ +K FFE+W+ ++S ++TFS G+ +R+QL ++Y
Sbjct: 151 HKDQLLAVKTAFFEVWLVWISHTMNSKTGTITFSHGISFSREQLSIIY 198
>gi|321470014|gb|EFX80992.1| hypothetical protein DAPPUDRAFT_50546 [Daphnia pulex]
Length = 303
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/142 (50%), Positives = 102/142 (71%), Gaps = 8/142 (5%)
Query: 101 DTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ 160
+++QL YD IL VSQAHH++C YTEE TR +VR PV + E + E++
Sbjct: 44 ESRQLAIYDTILTVSQAHHAHCAYTEEKTRNIVRTPVPIVMDE------GGNNDNADETR 97
Query: 161 RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTT-- 218
R+ W A H+TPS+QRVVEFAKRVPGF +LSQDDQLILIK+GFFE+W+G+VSRL
Sbjct: 98 RIATWSALATHMTPSIQRVVEFAKRVPGFPELSQDDQLILIKIGFFEVWLGHVSRLINSQ 157
Query: 219 DSSLTFSDGMYVTRQQLEVMYD 240
+ ++T +DG+ +++ Q+++++D
Sbjct: 158 EGTMTLTDGVTLSKPQMDLIFD 179
>gi|324518512|gb|ADY47124.1| Ecdysone-induced protein 78C, partial [Ascaris suum]
Length = 193
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 106/165 (64%), Gaps = 15/165 (9%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQ+EYRCLRDG+C V RLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR
Sbjct: 42 KGFFRRSIQKQMEYRCLRDGRCQVYRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 101
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E + +E V+ A+ + + +EL+ + +D+IL+VS AH +NC
Sbjct: 102 EGT-TEARDNCVAVIDAD-------------IEAQSELERDKSAIFDIILSVSHAHKANC 147
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVAS-STAECHESQRLWLWQ 166
Y EE + + + ++ E ++AE + QR+ +WQ
Sbjct: 148 NYIEEKIKHMQPRAINFNFDRNEMFENGCVNSAEMLDEQRIIMWQ 192
>gi|157130010|ref|XP_001655515.1| ecdysone-induced protein 78c (dr-78) [Aedes aegypti]
Length = 365
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 124/245 (50%), Gaps = 65/245 (26%)
Query: 52 VRYGRVPKRSRE------------RSDSETGSTRVSTTGAEP-PS--------------- 83
VRYGRVPK+SRE S + T +++S+ G P P+
Sbjct: 1 VRYGRVPKKSREAGNCAEDMNVCVNSTTPTQVSQLSSCGGTPTPTAPVISASNNINNNNN 60
Query: 84 ----------------------------SLETAGPVQSLPSSTELDTKQLLTYDVILAVS 115
S TA LP S +L YD+I V+
Sbjct: 61 DNLNNNNNNNNSVNNNNNNSAMTNCAEISTSTAVVTTILPDSMTFSPPELSIYDIIHCVA 120
Query: 116 QAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPS 175
QAH + YT E + P ++ + + E QR+WLWQQ+A +TPS
Sbjct: 121 QAHRGHSTYTTELSSINQCFPFL---------QLIMQSLDTIEDQRIWLWQQYAMRMTPS 171
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYVTRQQL 235
VQRVVEFAKRVPGF + QDDQLILIK+GFFE+W+ +V+R T DS+LTF DG+YVTRQQL
Sbjct: 172 VQRVVEFAKRVPGFGEFLQDDQLILIKLGFFEVWLSHVARATNDSALTFDDGVYVTRQQL 231
Query: 236 EVMYD 240
EV+YD
Sbjct: 232 EVIYD 236
>gi|189240947|ref|XP_971362.2| PREDICTED: similar to ecdysone inducible protein 75 [Tribolium
castaneum]
Length = 771
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 140/242 (57%), Gaps = 29/242 (11%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 61 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 120
Query: 62 RER---SDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
+ R + ++ ++R SLE A + EL+ +Q L V+ +AH
Sbjct: 121 KARILAAMQQSSNSR----------SLEKA-------VAAELEDEQRLLATVV----RAH 159
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHE--SQRLWLWQQFAAHVTPSV 176
C++T E ++ + P P +A + + + L Q F+ +P++
Sbjct: 160 IDTCDFTREKVEPMLARAREQPSYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAI 219
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQ 234
+ VVEFAKR+PGF L+QDDQ+ L+K G FE+ + ++ + T SS+ +G + R
Sbjct: 220 RGVVEFAKRIPGFSLLAQDDQVTLLKAGVFEVLLVRLACMFDTQTSSMICLNGQVLKRDS 279
Query: 235 LE 236
+
Sbjct: 280 IH 281
>gi|402593594|gb|EJW87521.1| nuclear hormone receptor [Wuchereria bancrofti]
Length = 361
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 123/229 (53%), Gaps = 30/229 (13%)
Query: 14 IEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRERSDSETGSTR 73
+EYRCLRDGKC + RLNRNRCQ+CRF+KCLAVGMSRDSVRYGR P+ + D+E
Sbjct: 1 MEYRCLRDGKCHIHRLNRNRCQFCRFRKCLAVGMSRDSVRYGRTPRHKGDEIDNENVPLW 60
Query: 74 VSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLV 133
T+ + E A D + I +V++AH + C Y + L
Sbjct: 61 EETSKF---THYEVA------------DVANARLQNFIESVTKAHLTCCNYVPSTLKDLK 105
Query: 134 RKPVS-LPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDL 192
+ LP +++ S + R LW + + R +EF+KR+PGF +
Sbjct: 106 PGVIHRLPHTKLPS------------ANRHHLWHSMNEALFEDLGRFIEFSKRIPGFITI 153
Query: 193 SQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTRQQLEVMY 239
S DQ++ +K FFE+W+ ++SR +LTFS G+ +R+QL ++Y
Sbjct: 154 SHKDQILAVKTAFFEVWLVWISRTMNSKTGTLTFSHGITFSREQLSIVY 202
>gi|170062760|ref|XP_001866809.1| ecdysone-inducible protein E78A [Culex quinquefasciatus]
gi|167880574|gb|EDS43957.1| ecdysone-inducible protein E78A [Culex quinquefasciatus]
Length = 489
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 105/158 (66%), Gaps = 6/158 (3%)
Query: 84 SLETAGPVQS-LPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPS 142
S TA V + LP S +L YD+I V+QAH +C YT E + L R VSL
Sbjct: 205 STSTAAIVGTILPDSMTFSPPELSIYDIIQCVAQAHRGHCTYTTELVKELNR--VSLLSL 262
Query: 143 EVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIK 202
++ + + E QR+WLWQQ+A +TPSVQR+VEFAKRVPGF + QDDQLILIK
Sbjct: 263 ---FRQLIYQSLDTVEDQRVWLWQQYALRMTPSVQRIVEFAKRVPGFGEFLQDDQLILIK 319
Query: 203 MGFFELWIGYVSRLTTDSSLTFSDGMYVTRQQLEVMYD 240
+GFF++W+ + ++ T+ +LTF DG+YV+RQQLEV+YD
Sbjct: 320 LGFFDVWLSHAAKAATEHALTFDDGVYVSRQQLEVIYD 357
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/61 (96%), Positives = 61/61 (100%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPK+SR
Sbjct: 50 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKKSR 109
Query: 63 E 63
E
Sbjct: 110 E 110
>gi|427783373|gb|JAA57138.1| Putative ecdysone-induced protein 75b [Rhipicephalus pulchellus]
Length = 624
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 147/242 (60%), Gaps = 30/242 (12%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPK
Sbjct: 60 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPK-- 117
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
RE++ +V+ + E ++L + EL+ + L +D ++ +AH
Sbjct: 118 REKAKILAAMQKVNASSQE-----------KAL--AVELEDEMRL-FDTVV---RAHEET 160
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVA------SSTAECHESQRLWLWQQFAAHVTPS 175
C++T + L+ + + P + P++A + AE + + R L + F+ +P+
Sbjct: 161 CDFTSDKVAPLLERARAHPVYTLCPPQLACPLNPTTQPAEGNGAPR--LMEDFSERFSPA 218
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQ 233
++ VVEFAKR+PGF L+QDDQ+ L+K G FE+ + ++ + + SS+ +G + R+
Sbjct: 219 IRGVVEFAKRIPGFSLLAQDDQVTLLKAGVFEVLLVRLACMFDSRSSSMVCLNGQVLLRE 278
Query: 234 QL 235
L
Sbjct: 279 SL 280
>gi|307199135|gb|EFN79845.1| Nuclear hormone receptor E75 [Harpegnathos saltator]
Length = 929
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 124/211 (58%), Gaps = 21/211 (9%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 67 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 126
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R + T PPS Q + EL+ +Q L V+ +AH
Sbjct: 127 KARILAAMQQT--------PPSR------SQEKVVAAELENEQRLLATVV----RAHLDT 168
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHE--SQRLWLWQQFAAHVTPSVQRV 179
C++T + ++ + P P +A + + + L Q F+ +P+++ V
Sbjct: 169 CDFTRDKVAPILARARETPNYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGV 228
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VEFAKR+PGF L+QDDQ+ L+K G FE+ +
Sbjct: 229 VEFAKRIPGFSLLAQDDQVTLLKAGVFEVLL 259
>gi|91680598|emb|CAJ87514.1| ecdysone inducible protein 75 isoform B [Blattella germanica]
Length = 907
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 122/211 (57%), Gaps = 21/211 (9%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
QGFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 26 QGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 85
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R + + S + Q + EL+ +Q L V+ +AH
Sbjct: 86 KARILAAMQQSSNSRS--------------QEKAVAAELEDEQRLLSTVV----RAHLDT 127
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHE--SQRLWLWQQFAAHVTPSVQRV 179
C++T E ++ + P P +A + + + L Q F+ +P+++ V
Sbjct: 128 CDFTREKVEPMLARARDQPSYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGV 187
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VEFAKR+PGF L QDDQ+ L+K G FE+ +
Sbjct: 188 VEFAKRIPGFALLPQDDQVTLLKAGVFEVLL 218
>gi|144687068|gb|ABP02025.1| ecdysone response nuclear receptor E75B [Oncopeltus fasciatus]
Length = 636
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 134/239 (56%), Gaps = 23/239 (9%)
Query: 2 FQGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60
QGFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 12 LQGFFRRSIQQKIQYRPCTKNQQCAILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKR 71
Query: 61 SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHS 120
+ R + + T Q + EL+ L V+ +AH
Sbjct: 72 EKARILAAMQQS--------------TNSKCQEKAVAAELEDDGRLLKTVV----RAHLD 113
Query: 121 NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHE--SQRLWLWQQFAAHVTPSVQR 178
C++T + ++ + P S P +A + + + L Q F+ +P+++
Sbjct: 114 TCDFTRDKVAPMILRARECPSFTASPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRG 173
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQL 235
VVEFAKR+PGF LSQ+DQ+ L+K G FE+ + ++ + T ++S+ +G + R +
Sbjct: 174 VVEFAKRIPGFSLLSQEDQVTLLKAGVFEVLLVRLACMFDTQNNSMICLNGQVLKRDSI 232
>gi|313757601|gb|ADR78566.1| ecdysone response nuclear receptor E75A [Agelena silvatica]
Length = 916
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 125/212 (58%), Gaps = 23/212 (10%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPK
Sbjct: 59 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPK-- 116
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
RE++ +V+ E ++L + E D +LLT + +AH
Sbjct: 117 REKAKILAAMQKVNACSQE-----------KALCAELE-DELRLLT-----TIVRAHEET 159
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVA---SSTAECHESQRLWLWQQFAAHVTPSVQR 178
C+YT + LV K + P P++A + E+ + F+ P+++
Sbjct: 160 CDYTRDKVAGLVEKARTQPVYTQCPPQLACPLNPAPHILENGVSHYMEDFSERFAPAIKG 219
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VVEFAKR+PGF LSQDDQ+ L+K G FE+ +
Sbjct: 220 VVEFAKRIPGFGFLSQDDQVTLLKAGVFEVLL 251
>gi|340721154|ref|XP_003398990.1| PREDICTED: ecdysone-induced protein 75B, isoforms C/D-like isoform
1 [Bombus terrestris]
Length = 895
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 123/211 (58%), Gaps = 21/211 (9%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 111 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 170
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R + + S + Q + EL+ +Q L V+ QAH
Sbjct: 171 KARILAAMQQSSHSRS--------------QEKAVAAELEDEQRLLATVV----QAHLDT 212
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHE--SQRLWLWQQFAAHVTPSVQRV 179
C++T + ++ + P P +A + + + L Q F+ +P+++ V
Sbjct: 213 CDFTRDKVAPILVRARETPNYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGV 272
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VEFAKR+PGF L+QDDQ+ L+K G FE+ +
Sbjct: 273 VEFAKRIPGFSLLAQDDQVTLLKAGVFEVLL 303
>gi|383847771|ref|XP_003699526.1| PREDICTED: ecdysone-inducible protein E75-like [Megachile
rotundata]
Length = 782
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 123/211 (58%), Gaps = 21/211 (9%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 87 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 146
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R + + S + Q + EL+ +Q L V+ QAH
Sbjct: 147 KARILAAMQQSSHSRS--------------QEKAVAAELEDEQRLLATVV----QAHLDT 188
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHE--SQRLWLWQQFAAHVTPSVQRV 179
C++T + ++ + P P +A + + + L Q F+ +P+++ V
Sbjct: 189 CDFTRDKVAPILVRARETPNYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGV 248
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VEFAKR+PGF L+QDDQ+ L+K G FE+ +
Sbjct: 249 VEFAKRIPGFSLLAQDDQVTLLKAGVFEVLL 279
>gi|340721156|ref|XP_003398991.1| PREDICTED: ecdysone-induced protein 75B, isoforms C/D-like isoform
2 [Bombus terrestris]
gi|350399401|ref|XP_003485512.1| PREDICTED: ecdysone-induced protein 75B, isoform B-like [Bombus
impatiens]
Length = 872
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 123/211 (58%), Gaps = 21/211 (9%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 88 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 147
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R + + S + Q + EL+ +Q L V+ QAH
Sbjct: 148 KARILAAMQQSSHSRS--------------QEKAVAAELEDEQRLLATVV----QAHLDT 189
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHE--SQRLWLWQQFAAHVTPSVQRV 179
C++T + ++ + P P +A + + + L Q F+ +P+++ V
Sbjct: 190 CDFTRDKVAPILVRARETPNYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGV 249
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VEFAKR+PGF L+QDDQ+ L+K G FE+ +
Sbjct: 250 VEFAKRIPGFSLLAQDDQVTLLKAGVFEVLL 280
>gi|121582432|ref|NP_001073579.1| ecdysone-induced protein 75 [Apis mellifera]
gi|121308432|dbj|BAF43600.1| ecdysone-induced protein 75 [Apis mellifera]
Length = 900
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 123/211 (58%), Gaps = 21/211 (9%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 88 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 147
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R + + S + Q + EL+ +Q L V+ QAH
Sbjct: 148 KARILAAMQQSSHSRS--------------QEKAVAAELEDEQRLLATVV----QAHLDT 189
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHE--SQRLWLWQQFAAHVTPSVQRV 179
C++T + ++ + P P +A + + + L Q F+ +P+++ V
Sbjct: 190 CDFTRDKVAPILVRARETPNYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGV 249
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VEFAKR+PGF L+QDDQ+ L+K G FE+ +
Sbjct: 250 VEFAKRIPGFSLLAQDDQVTLLKAGVFEVLL 280
>gi|91680596|emb|CAJ87513.1| ecdysone inducible protein 75 isoform A [Blattella germanica]
Length = 954
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 122/211 (57%), Gaps = 21/211 (9%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 73 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 132
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R + + S + Q + EL+ +Q L V+ +AH
Sbjct: 133 KARILAAMQQSSNSRS--------------QEKAVAAELEDEQRLLSTVV----RAHLDT 174
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHE--SQRLWLWQQFAAHVTPSVQRV 179
C++T E ++ + P P +A + + + L Q F+ +P+++ V
Sbjct: 175 CDFTREKVEPMLARARDQPSYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGV 234
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VEFAKR+PGF L QDDQ+ L+K G FE+ +
Sbjct: 235 VEFAKRIPGFALLPQDDQVTLLKAGVFEVLL 265
>gi|187468486|emb|CAM97375.1| ecdysone inducible protein 75 [Blattella germanica]
Length = 945
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 122/211 (57%), Gaps = 21/211 (9%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 64 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 123
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R + + S + Q + EL+ +Q L V+ +AH
Sbjct: 124 KARILAAMQQSSNSRS--------------QEKAVAAELEDEQRLLSTVV----RAHLDT 165
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHE--SQRLWLWQQFAAHVTPSVQRV 179
C++T E ++ + P P +A + + + L Q F+ +P+++ V
Sbjct: 166 CDFTREKVEPMLARARDQPSYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGV 225
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VEFAKR+PGF L QDDQ+ L+K G FE+ +
Sbjct: 226 VEFAKRIPGFALLPQDDQVTLLKAGVFEVLL 256
>gi|187468482|emb|CAM97373.1| ecdysone inducible protein 75 [Blattella germanica]
Length = 985
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 122/211 (57%), Gaps = 21/211 (9%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 104 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 163
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R + + S + Q + EL+ +Q L V+ +AH
Sbjct: 164 KARILAAMQQSSNSRS--------------QEKAVAAELEDEQRLLSTVV----RAHLDT 205
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHE--SQRLWLWQQFAAHVTPSVQRV 179
C++T E ++ + P P +A + + + L Q F+ +P+++ V
Sbjct: 206 CDFTREKVEPMLARARDQPSYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGV 265
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VEFAKR+PGF L QDDQ+ L+K G FE+ +
Sbjct: 266 VEFAKRIPGFALLPQDDQVTLLKAGVFEVLL 296
>gi|358254660|dbj|GAA56063.1| ecdysone-induced protein 78C, partial [Clonorchis sinensis]
Length = 1541
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 78/159 (49%), Positives = 104/159 (65%), Gaps = 23/159 (14%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEY+CLRDGKCLVIRLNRNRCQYCRF+KC+AVGMS++SVRYGR+P+R+
Sbjct: 923 KGFFRRSIQKQIEYKCLRDGKCLVIRLNRNRCQYCRFRKCIAVGMSKESVRYGRMPRRT- 981
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQS-LPSS----------TELDTK-------- 103
RS T + ++ G P + GP S PS+ + L T+
Sbjct: 982 -RSSEPTPTPEINLPGHRTPGGTLSIGPESSGQPSAFGPPTGSSNTSSLSTRTGVCSRPP 1040
Query: 104 --QLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLP 140
QL YD+IL V+QA+ + YTE+ +++ +P+SLP
Sbjct: 1041 LDQLGLYDIILTVNQAYQNFSSYTEDKVKQMRCRPISLP 1079
>gi|144687066|gb|ABP02024.1| ecdysone response nuclear receptor E75A [Oncopeltus fasciatus]
Length = 690
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 134/238 (56%), Gaps = 23/238 (9%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 67 KGFFRRSIQQKIQYRPCTKNQQCAILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 126
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R + + T Q + EL+ L V+ +AH
Sbjct: 127 KARILAAMQQS--------------TNSKCQEKAVAAELEDDGRLLKTVV----RAHLDT 168
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHE--SQRLWLWQQFAAHVTPSVQRV 179
C++T + ++ + P S P +A + + + L Q F+ +P+++ V
Sbjct: 169 CDFTRDKVAPMILRARECPSFTASPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGV 228
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQL 235
VEFAKR+PGF LSQ+DQ+ L+K G FE+ + ++ + T ++S+ +G + R +
Sbjct: 229 VEFAKRIPGFSLLSQEDQVTLLKAGVFEVLLVRLACMFDTQNNSMICLNGQVLKRDSI 286
>gi|391327316|ref|XP_003738149.1| PREDICTED: nuclear hormone receptor E75-like [Metaseiulus
occidentalis]
Length = 667
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 137/242 (56%), Gaps = 34/242 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+ VGMSRD+VR+GRVPK
Sbjct: 81 KGFFRRSIQQKIQYRPCTKNQQCAILRINRNRCQYCRLKKCIGVGMSRDAVRFGRVPK-- 138
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
RE++ +V+ + E + L S EL+ + L V+ QAH
Sbjct: 139 REKAKILAAMQKVNASSQE-----------KQL--SAELEDEMRLFQSVV----QAHEET 181
Query: 122 CEYTEEGTRRLVRKPVSLP-----PSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
CE+T + ++ + P PS ++ P S + + F+ +P++
Sbjct: 182 CEFTSDKIAPMIERARVDPVYARCPSGLACPLNPQSPDGTNR-----FMEDFSERFSPAI 236
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL---TTDSSLTFSDGMYVTRQ 233
+ VVEFAKR+PGF L+Q+DQ+ L+K G FE+ + ++RL T+ +T +G + R
Sbjct: 237 RGVVEFAKRIPGFSLLAQEDQVTLLKAGVFEVLLVRLARLFDSATNQMITL-NGQVLRRD 295
Query: 234 QL 235
L
Sbjct: 296 SL 297
>gi|332025807|gb|EGI65964.1| Ecdysone-inducible protein E75 [Acromyrmex echinatior]
Length = 891
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 123/211 (58%), Gaps = 21/211 (9%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 110 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 169
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R + + S + Q + EL+ +Q L V+ +AH
Sbjct: 170 KARILAAMQQSSHSRS--------------QEKAVAAELEDEQRLLTTVV----RAHIDT 211
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHE--SQRLWLWQQFAAHVTPSVQRV 179
C++T + ++ + P P +A + + + L Q F+ +P+++ V
Sbjct: 212 CDFTRDKVTPILARARETPNYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGV 271
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VEFAKR+PGF L+QDDQ+ L+K G FE+ +
Sbjct: 272 VEFAKRIPGFNLLAQDDQVTLLKAGVFEVLL 302
>gi|443723214|gb|ELU11745.1| hypothetical protein CAPTEDRAFT_62897, partial [Capitella teleta]
Length = 347
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 131/238 (55%), Gaps = 31/238 (13%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR CL++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 30 KGFFRRSIQQKIQYRPCLKNQQCSIMRVNRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 89
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + + + + S LE DVI + +H
Sbjct: 90 KAKIIEQMQKVNAQSQVSVLNSLLENEN-------------------DVIQKIMDSHFRL 130
Query: 122 CEYTEEGTRRLVRKPVSLP-----PSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
C++T + K + P P+ + P + + + SQ W +F+ TP++
Sbjct: 131 CDFTHSKFVQFFEKAWAEPRFVDCPAHKACPLNPTPSEQDSMSQ----WDEFSNCFTPAI 186
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTR 232
+ VV FAK +PGF SQ+DQ+ L+K G FE+ + +++ L + +++ F++G R
Sbjct: 187 RNVVYFAKCIPGFSVFSQEDQVTLLKAGTFEVLLVHLAPLFDSRTNTMLFANGTLYKR 244
>gi|321479389|gb|EFX90345.1| hypothetical protein DAPPUDRAFT_205205 [Daphnia pulex]
Length = 712
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 125/212 (58%), Gaps = 24/212 (11%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPK
Sbjct: 121 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPK-- 178
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
RE++ V+ AE +SLP+ D QL+ +V +AH
Sbjct: 179 REKAKILAAMQSVNARLAE-----------RSLPAEFA-DEVQLMQ-----SVVRAHMET 221
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVA---SSTAECHESQRLWLWQQFAAHVTPSVQR 178
C++T E + L+ P P +A + T Q+ L Q F+ P+++
Sbjct: 222 CDFTREKVQILMADAHRQPNYTACPPTLACPLNPTPAPSNGQQ-QLLQDFSERFLPAIRD 280
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VVEFAKR+PGF L++DD++ L+K G FE+ +
Sbjct: 281 VVEFAKRLPGFTLLAEDDKVTLLKPGVFEVLL 312
>gi|284157379|gb|ADB79814.1| E75 nuclear receptor [Daphnia pulex]
Length = 954
Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 129/217 (59%), Gaps = 34/217 (15%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPK
Sbjct: 119 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPK-- 176
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
RE++ V+ AE +SLP+ D QL+ +V +AH
Sbjct: 177 REKAKILAAMQSVNARLAE-----------RSLPAEFA-DEVQLMQ-----SVVRAHMET 219
Query: 122 CEYTEEGTRRLV----RKP--VSLPPSEVS--SPEVASSTAECHESQRLWLWQQFAAHVT 173
C++T E + L+ R+P + PP+ +P A S + L Q F+
Sbjct: 220 CDFTREKVQILMADAHRQPNYTACPPTLACPLNPTPAPSNGQ------QQLLQDFSERFL 273
Query: 174 PSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
P+++ VVEFAKR+PGF L++DD++ L+K G FE+ +
Sbjct: 274 PAIRDVVEFAKRLPGFTLLAEDDKVTLLKPGVFEVLL 310
>gi|145228027|gb|ABP48738.1| E75 nuclear receptor [Daphnia magna]
Length = 942
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 124/212 (58%), Gaps = 24/212 (11%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPK
Sbjct: 121 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPK-- 178
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
RE++ V+ AE +SLP+ D QL+ +V +AH
Sbjct: 179 REKAKILAAMQSVNARLAE-----------RSLPAEFA-DEVQLMQ-----SVVRAHMET 221
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVA---SSTAECHESQRLWLWQQFAAHVTPSVQR 178
C++T E + L+ P P +A + T Q+ L Q F+ P+++
Sbjct: 222 CDFTREKVQVLMADAHRQPNYTACPPTLACPLNPTPAPSNGQQ-QLLQDFSERFLPAIRD 280
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VVEFAKR PGF L++DD++ L+K G FE+ +
Sbjct: 281 VVEFAKRCPGFTLLAEDDKVTLLKPGVFEVLL 312
>gi|220942181|gb|AAY89587.2| E75 nuclear receptor [Gecarcinus lateralis]
Length = 798
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 124/213 (58%), Gaps = 26/213 (12%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPK
Sbjct: 53 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPK-- 110
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
RE++ V+ E +++ + E DT+ V A+ +AH
Sbjct: 111 REKAKILAAMQSVNARSQE-----------RAVLAELEDDTR------VTAAIIRAHMDT 153
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASS----TAECHESQRLWLWQQFAAHVTPSVQ 177
C++T + ++++ + P P +A H Q L Q F+ +P+++
Sbjct: 154 CDFTRDKVAPMLQQARAHPSYTQCPPTLACPLNPRPVPLHGQQE--LVQDFSERFSPAIR 211
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VVEFAKR+PGF L Q+DQ+ L+K G FE+ +
Sbjct: 212 GVVEFAKRLPGFQQLPQEDQVTLLKAGVFEVLL 244
>gi|328704916|ref|XP_001946085.2| PREDICTED: ecdysone-induced protein 75B, isoforms C/D
[Acyrthosiphon pisum]
Length = 1026
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 122/214 (57%), Gaps = 27/214 (12%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR +KC++VGMSRD+VR+GRVPKR
Sbjct: 217 KGFFRRSIQQKIQYRPCTKNQQCNILRINRNRCQYCRLRKCISVGMSRDAVRFGRVPKRE 276
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R + + S + Q + EL+ Q L V+ +AH
Sbjct: 277 KARIMAAMQHSSNSKS--------------QEKAAVAELEDDQRLVASVV----RAHLET 318
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ-----FAAHVTPSV 176
C++T + + + P + P +A + S R QQ F+ +P++
Sbjct: 319 CDFTSDKVAPTLARAREQPNYTLCHPTLA---CPLNPSPRPVTGQQELLNDFSKRFSPAI 375
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
+ VVEFAKR+PGF L+QDDQ+ L+K G FE+ +
Sbjct: 376 RGVVEFAKRIPGFGLLAQDDQVTLLKAGVFEVLL 409
>gi|238558276|gb|ACR45972.1| ecdysone inducible nuclear hormone receptor [Acyrthosiphon pisum]
Length = 319
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 122/214 (57%), Gaps = 27/214 (12%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR +KC++VGMSRD+VR+GRVPKR
Sbjct: 7 KGFFRRSIQQKIQYRPCTKNQQCNILRINRNRCQYCRLRKCISVGMSRDAVRFGRVPKRE 66
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R + + S + Q + EL+ Q L V+ +AH
Sbjct: 67 KARIMAAMQHSSNSKS--------------QEKAAVAELEDDQRLVASVV----RAHLET 108
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ-----FAAHVTPSV 176
C++T + + + P + P +A + S R QQ F+ +P++
Sbjct: 109 CDFTSDKVAPTLARAREQPNYTLCHPTLACPL---NPSPRPVTGQQELLNDFSKRFSPAI 165
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
+ VVEFAKR+PGF L+QDDQ+ L+K G FE+ +
Sbjct: 166 RGVVEFAKRIPGFGLLAQDDQVTLLKAGVFEVLL 199
>gi|6015045|sp|O77245.1|E75_METEN RecName: Full=Nuclear hormone receptor E75; AltName: Full=Nuclear
receptor subfamily 1 group D member 3
gi|3694976|gb|AAC71770.1| nuclear hormone receptor E75 [Metapenaeus ensis]
Length = 606
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 30/242 (12%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPK
Sbjct: 53 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPK-- 110
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
RE++ V+ E +++ + E DT+ V A+ +AH
Sbjct: 111 REKAKILAAMQSVNAKSQE-----------RAVLAELEDDTR------VTAAIIRAHMDT 153
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASS----TAECHESQRLWLWQQFAAHVTPSVQ 177
C++T + ++++ + P P +A H Q L Q F+ + P+++
Sbjct: 154 CDFTRDKVAPMLQQARTHPSYTQCPPYLACPLNPRPVPLHGQQE--LVQDFSEALLPAIR 211
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL---TTDSSLTFSDGMYVTRQQ 234
VVEFAKR+PGF L Q+DQ+ L+K G FE+ + ++ + T++ L +G V R+
Sbjct: 212 GVVEFAKRLPGFQQLPQEDQVTLLKAGVFEVLLVRLAGMFDARTNAMLCL-NGQLVRREA 270
Query: 235 LE 236
L
Sbjct: 271 LH 272
>gi|405950647|gb|EKC18621.1| Putative nuclear hormone receptor HR3 [Crassostrea gigas]
Length = 685
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 132/280 (47%), Gaps = 65/280 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R+ C++ R+NRNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 284 KGFFRRSQAGPVNYQCPRNKNCVIDRVNRNRCQFCRLQKCLALGMSRDAVKFGRMSKKQR 343
Query: 63 ERSDSETGSTRVSTTGA------------------------------------------- 79
ER + E + S
Sbjct: 344 ERVEDEANYVKQSRMNGYDTSCGMPPSNNNNQFSIYNDCHLMYTSNGYAYTMPSPASESQ 403
Query: 80 -------EPPSSLETAGPVQSLPSSTELDTKQLLTYDVIL--AVSQAHHSNCEYTEEGTR 130
EPP+ T P P L L V+L AV++AH C YT E +
Sbjct: 404 PETPVSPEPPAYSTTQAPTTQPPHPIALLRAVDLMDPVMLGKAVTEAHMRTCLYTSEQIQ 463
Query: 131 RLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFC 190
+ S ++ E+ + SQ LW + A +T +VQ+++EFAK +PGF
Sbjct: 464 HI--------QSSITPQEIIDAFKTMTRSQ---LWSEVAEKITIAVQQIIEFAKMLPGFM 512
Query: 191 DLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGM 228
DLSQDDQ++L+K G FEL + R+ + +S+ F + +
Sbjct: 513 DLSQDDQIMLLKAGSFELALIRACRVFDERTNSIIFGNAI 552
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 81/160 (50%), Gaps = 34/160 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R+ C++ R+NRNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 88 KGFFRRSQAGPVNYQCPRNKNCVIDRVNRNRCQFCRLQKCLALGMSRDAVKFGRMSKKQR 147
Query: 63 ERSDSETGSTRVS------TTGAEPPSS--------------LETAGP-----VQSLPSS 97
ER + E + S T+ PPS+ +E GP + S+
Sbjct: 148 ERVEDEANYVKQSRMNGYDTSCGMPPSNNNNQFSIFHGGSIFMEFVGPLIHELINKDFSA 207
Query: 98 TELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPV 137
T LD VS H + + EG +++ P
Sbjct: 208 TALDQT---------PVSSLDHGSVAMSSEGMMQIIPPPA 238
>gi|194270637|gb|ACF36863.1| nuclear receptor E75 protein [Fenneropenaeus chinensis]
Length = 798
Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 123/216 (56%), Gaps = 32/216 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 53 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 112
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + + S + + +Q L E DT+ V A+ +AH
Sbjct: 113 KAKILAAMQSVNARS---------QERAVLQEL----EDDTR------VTAAIIRAHMDT 153
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLW-------LWQQFAAHVTP 174
C++T + + ++ + P P +A C S R L Q F+ +P
Sbjct: 154 CDFTRDKVAPMHQQARTHPSYTQCPPTLA-----CPLSPRPVPLQGQQELVQDFSERFSP 208
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
+++ VVEFAKR+PGF L Q+DQ+ L+K G FE+ +
Sbjct: 209 AIRGVVEFAKRLPGFQQLPQEDQVTLLKAGVFEVLL 244
>gi|148226871|ref|NP_001085940.1| nuclear receptor subfamily 1, group D, member 1 [Xenopus laevis]
gi|49115842|gb|AAH73584.1| MGC82865 protein [Xenopus laevis]
gi|49119474|gb|AAH73572.1| MGC82865 protein [Xenopus laevis]
Length = 519
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 138/281 (49%), Gaps = 45/281 (16%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRF+KCL+VGMSRD+VR+GR+PKR
Sbjct: 136 KGFFRRSIQQNIQYKKCLKNETCSIVRINRNRCQQCRFRKCLSVGMSRDAVRFGRIPKRE 195
Query: 62 RERSDSETGSTRVSTTGAE------------------PPSSLETAGPVQSLPSSTELDTK 103
++R +E S T + P SS SLP+
Sbjct: 196 KQRMLAEMHSAMNHITSGQSHFGRRSPVPLQPHQQLHPSSSPLMGTAPTSLPTQAYSQYP 255
Query: 104 QLLTY----------DVILAVSQAHHSNCEYTEEGTRRLV---RKPVSLPP-------SE 143
Q LT +VI V+ AH Y + + + + PP E
Sbjct: 256 QQLTPPTSPSPDHNDEVISQVAMAHQQIFVYANDKVGKKTSWDHQHGNQPPPCWSHDSEE 315
Query: 144 VSSPEVASSTAECHESQRL----WLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLI 199
+A H+ + +W+ F+ TP+V+ VVEFA+ +PGF DL+Q+DQ+
Sbjct: 316 SHDIRLACPMNALHQGGPVRSVQEVWEHFSLSFTPAVREVVEFARHIPGFNDLTQNDQVT 375
Query: 200 LIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLEVM 238
L+K G FE+ + + L + SL F G + +L M
Sbjct: 376 LLKAGTFEVLMVRFASLFDARERSLRFLSGATYSLPELHAM 416
>gi|157115978|ref|XP_001652743.1| ecdysone-induced protein 75b [Aedes aegypti]
Length = 1045
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 119/206 (57%), Gaps = 24/206 (11%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 220 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 279
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R A S + G ++L +TELD + L + AV +AH
Sbjct: 280 KAR------------ILAAMQQSTQNRGNQRAL--ATELDDQPRL----LAAVLRAHMDT 321
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVE 181
CE+T E + ++ P S P +A E Q + Q AHV ++ V++
Sbjct: 322 CEFTREKVTSMRQRARDCP--TYSMPTLACPLNPAPELQSEQEFSQRFAHV---IRGVID 376
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE 207
FA +PGF L+QDD+ L+K G F+
Sbjct: 377 FAGMIPGFQMLTQDDKFTLLKAGLFD 402
>gi|113431930|emb|CAL36975.1| ecdysone-induced protein 75C [Aedes aegypti]
Length = 1134
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 119/206 (57%), Gaps = 24/206 (11%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 285 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 344
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R A S + G ++L +TELD + L + AV +AH
Sbjct: 345 KAR------------ILAAMQQSTQNRGNQRAL--ATELDDQPRL----LAAVLRAHMDT 386
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVE 181
CE+T E + ++ P S P +A E Q + Q AHV ++ V++
Sbjct: 387 CEFTREKVTSMRQRARDCP--TYSMPTLACPLNPAPELQSEQEFSQRFAHV---IRGVID 441
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE 207
FA +PGF L+QDD+ L+K G F+
Sbjct: 442 FAGMIPGFQMLTQDDKFTLLKAGLFD 467
>gi|113431926|emb|CAL36974.1| ecdysone-induced protein 75A [Aedes aegypti]
gi|403182870|gb|EAT40908.2| AAEL007397-PA [Aedes aegypti]
Length = 1069
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 119/206 (57%), Gaps = 24/206 (11%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 220 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 279
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R A S + G ++L +TELD + L + AV +AH
Sbjct: 280 KAR------------ILAAMQQSTQNRGNQRAL--ATELDDQPRL----LAAVLRAHMDT 321
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVE 181
CE+T E + ++ P S P +A E Q + Q AHV ++ V++
Sbjct: 322 CEFTREKVTSMRQRARDCP--TYSMPTLACPLNPAPELQSEQEFSQRFAHV---IRGVID 376
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE 207
FA +PGF L+QDD+ L+K G F+
Sbjct: 377 FAGMIPGFQMLTQDDKFTLLKAGLFD 402
>gi|113431928|emb|CAL36973.1| ecdysone-induced protein 75B [Aedes aegypti]
gi|403182871|gb|EJY57686.1| AAEL007397-PC [Aedes aegypti]
Length = 1106
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 118/206 (57%), Gaps = 24/206 (11%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 257 HGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 316
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R A S + G ++L +TELD + L + AV +AH
Sbjct: 317 KAR------------ILAAMQQSTQNRGNQRAL--ATELDDQPRL----LAAVLRAHMDT 358
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVE 181
CE+T E + ++ P S P +A E Q + Q AHV ++ V++
Sbjct: 359 CEFTREKVTSMRQRARDCP--TYSMPTLACPLNPAPELQSEQEFSQRFAHV---IRGVID 413
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE 207
FA +PGF L+QDD+ L+K G F+
Sbjct: 414 FAGMIPGFQMLTQDDKFTLLKAGLFD 439
>gi|170044573|ref|XP_001849917.1| ecdysone-induced protein 75b [Culex quinquefasciatus]
gi|167867671|gb|EDS31054.1| ecdysone-induced protein 75b [Culex quinquefasciatus]
Length = 1111
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/237 (37%), Positives = 132/237 (55%), Gaps = 26/237 (10%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 257 HGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 316
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R A S + G ++L +TELD + L + AV +AH
Sbjct: 317 KAR------------ILAAMQQSTQNRGNQRAL--ATELDDQPRL----LAAVLRAHMET 358
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVE 181
CE+T E + ++ P S P +A E Q + Q AHV ++ V++
Sbjct: 359 CEFTREKVTSMRQRARDCP--SYSMPTLACPLNPAPELQSEQEFSQRFAHV---IRGVID 413
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQLE 236
FA +PGF L+QDD+ L+K G F+ L++ + T +S+ +G + R ++
Sbjct: 414 FAGMIPGFQLLTQDDKFTLLKAGLFDALFVRLICMFDTQINSIICLNGQVMRRDAIQ 470
>gi|158300377|ref|XP_320316.4| AGAP012223-PA [Anopheles gambiae str. PEST]
gi|157013130|gb|EAA00107.5| AGAP012223-PA [Anopheles gambiae str. PEST]
Length = 934
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 131/237 (55%), Gaps = 26/237 (10%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 107 HGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 166
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R A S + G ++L ++ELD + L V+ QAH
Sbjct: 167 KAR------------ILAAMQQSTQNRGNQRAL--ASELDDQPRLLASVL----QAHIET 208
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVE 181
CE+T E + ++ P S P +A E Q + Q AHV ++ V++
Sbjct: 209 CEFTREKVAAMRQRARDCP--SYSMPTLACPLNPAPELQSEQEFSQRFAHV---IRGVID 263
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQLE 236
FA +PGF L+QDD+ L+K G F+ L++ + T +S+ +G + R ++
Sbjct: 264 FAGMIPGFQLLTQDDKFTLLKAGLFDALFVRLICMFDTSINSIICLNGQVMRRDTIQ 320
>gi|345971952|gb|ABU89808.2| nuclear receptor subfamily 1 group D variant 2 [Mytilus
galloprovincialis]
Length = 403
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 124/240 (51%), Gaps = 33/240 (13%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR CL++ +C ++R+NRNRCQYCR KKC+AVGMSRD VR+GRVPK+
Sbjct: 45 KGFFRRSIQQKIQYRPCLKNQQCNIMRVNRNRCQYCRLKKCIAVGMSRDGVRFGRVPKKE 104
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH-- 119
R + T + + L+ D+I AV AH
Sbjct: 105 EARIIEQMHRVNCQTQVNQLHTLLQNPD-------------------DLIQAVILAHRQT 145
Query: 120 -----SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
N + E L P+ ++ P A + +++ + W+ F TP
Sbjct: 146 NTIPPQNVQTMREAA--LCNNDFLNVPAHMACPLNAQLARDPNDNSQ--DWEDFYDFYTP 201
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDS-SLTFSDGMYVTR 232
++ VV FAK VPGFC L+QDDQ+ L+K FE L + + TD+ ++ F+ G R
Sbjct: 202 AIISVVNFAKSVPGFCILNQDDQVTLLKAATFEVLLVRHACLFDTDNGTMMFTCGKLFKR 261
>gi|195441651|ref|XP_002068617.1| GK20573 [Drosophila willistoni]
gi|194164702|gb|EDW79603.1| GK20573 [Drosophila willistoni]
Length = 930
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 121/210 (57%), Gaps = 31/210 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 359 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 418
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R A S + G ++L +TELD + L + AV +AH
Sbjct: 419 KAR------------ILAAMQQSTQNRGQQRAL--ATELDDQPRL----LAAVLRAHLET 460
Query: 122 CEYTEEGTRRLVRKPVSLP----PSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
CE+T+E + ++ P P+ ++ P + + L Q+F+ ++
Sbjct: 461 CEFTKEKVSAMRQRARECPSYSMPTLLACP--------LNPAPELQSEQEFSQRFAHVIR 512
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 513 GVIDFAGMIPGFQLLTQDDKFTLLKAGLFD 542
>gi|195128283|ref|XP_002008593.1| GI13580 [Drosophila mojavensis]
gi|193920202|gb|EDW19069.1| GI13580 [Drosophila mojavensis]
Length = 1429
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 120/209 (57%), Gaps = 31/209 (14%)
Query: 4 GFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR +
Sbjct: 462 GFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREK 521
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
R A S + G ++L +TELD + L + AV +AH C
Sbjct: 522 AR------------ILAAMQQSTQNRGQQRAL--ATELDDQPRL----LAAVLRAHLETC 563
Query: 123 EYTEEGTRRLVRKPVSLP----PSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
E+T+E + ++ P P+ ++ P + + L Q+F+ ++
Sbjct: 564 EFTKEKVSAMRQRARDCPSYSMPTLLACP--------LNPAPELQSEQEFSQRFAHVIRG 615
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 616 VIDFAGMIPGFQLLTQDDKFTLLKAGLFD 644
>gi|24666206|ref|NP_524133.2| Ecdysone-induced protein 75B, isoform A [Drosophila melanogaster]
gi|71153512|sp|P17672.2|E75BA_DROME RecName: Full=Ecdysone-induced protein 75B, isoform A; Short=E75-B;
AltName: Full=Nuclear receptor subfamily 1 group D
member 3, isoform A
gi|23093218|gb|AAN11688.1| Ecdysone-induced protein 75B, isoform A [Drosophila melanogaster]
Length = 1355
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 120/209 (57%), Gaps = 31/209 (14%)
Query: 4 GFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR +
Sbjct: 423 GFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREK 482
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
R A S + G ++L +TELD + L + AV +AH C
Sbjct: 483 AR------------ILAAMQQSTQNRGQQRAL--ATELDDQPRL----LAAVLRAHLETC 524
Query: 123 EYTEEGTRRLVRKPVSLP----PSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
E+T+E + ++ P P+ ++ P + + L Q+F+ ++
Sbjct: 525 EFTKEKVSAMRQRARDCPSYSMPTLLACP--------LNPAPELQSEQEFSQRFAHVIRG 576
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 577 VIDFAGMIPGFQLLTQDDKFTLLKAGLFD 605
>gi|194871629|ref|XP_001972875.1| GG15765 [Drosophila erecta]
gi|190654658|gb|EDV51901.1| GG15765 [Drosophila erecta]
Length = 1370
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 120/209 (57%), Gaps = 31/209 (14%)
Query: 4 GFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR +
Sbjct: 429 GFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREK 488
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
R A S + G ++L +TELD + L + AV +AH C
Sbjct: 489 AR------------ILAAMQQSTQNRGQQRAL--ATELDDQPRL----LAAVLRAHLETC 530
Query: 123 EYTEEGTRRLVRKPVSLP----PSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
E+T+E + ++ P P+ ++ P + + L Q+F+ ++
Sbjct: 531 EFTKEKVSAMRQRARDCPSYSMPTLLACP--------LNPAPELQSEQEFSQRFAHVIRG 582
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 583 VIDFAGMIPGFQLLTQDDKFTLLKAGLFD 611
>gi|24666202|ref|NP_730322.1| Ecdysone-induced protein 75B, isoform C [Drosophila melanogaster]
gi|71153514|sp|P17671.2|E75BC_DROME RecName: Full=Ecdysone-induced protein 75B, isoforms C/D; AltName:
Full=E75-A; AltName: Full=Nuclear receptor subfamily 1
group D member 3, isoforms C/D
gi|23093217|gb|AAN11687.1| Ecdysone-induced protein 75B, isoform C [Drosophila melanogaster]
Length = 1199
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 121/210 (57%), Gaps = 31/210 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 266 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 325
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R A S + G ++L +TELD + L + AV +AH
Sbjct: 326 KAR------------ILAAMQQSTQNRGQQRAL--ATELDDQPRL----LAAVLRAHLET 367
Query: 122 CEYTEEGTRRLVRKPVSLP----PSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
CE+T+E + ++ P P+ ++ P + + L Q+F+ ++
Sbjct: 368 CEFTKEKVSAMRQRARDCPSYSMPTLLACP--------LNPAPELQSEQEFSQRFAHVIR 419
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 420 GVIDFAGMIPGFQLLTQDDKFTLLKAGLFD 449
>gi|345971948|gb|ABU89807.2| nuclear receptor subfamily 1 group D variant 1 [Mytilus
galloprovincialis]
Length = 437
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 124/240 (51%), Gaps = 33/240 (13%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR CL++ +C ++R+NRNRCQYCR KKC+AVGMSRD VR+GRVPK+
Sbjct: 45 KGFFRRSIQQKIQYRPCLKNQQCNIMRVNRNRCQYCRLKKCIAVGMSRDGVRFGRVPKKE 104
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH-- 119
R +E V +L T D+I AV AH
Sbjct: 105 EAR-------------------IIEQMHRVNCQTQVNQLHTLLQNPDDLIQAVILAHRQT 145
Query: 120 -----SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
N + E L P+ ++ P A + +++ + W+ F TP
Sbjct: 146 NTIPPQNVQTMREAA--LCNNDFLNVPAHMACPLNAQLARDPNDNSQ--DWEDFYDFYTP 201
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDS-SLTFSDGMYVTR 232
++ VV FAK VPGFC L+QDDQ+ L+K FE L + + TD+ ++ F+ G R
Sbjct: 202 AIISVVNFAKSVPGFCILNQDDQVTLLKAATFEVLLVRHACLFDTDNGTMMFTCGKLFKR 261
>gi|24666198|ref|NP_730321.1| Ecdysone-induced protein 75B, isoform B [Drosophila melanogaster]
gi|386771372|ref|NP_001246821.1| Ecdysone-induced protein 75B, isoform E [Drosophila melanogaster]
gi|386771374|ref|NP_001246822.1| Ecdysone-induced protein 75B, isoform F [Drosophila melanogaster]
gi|71153513|sp|P13055.2|E75BB_DROME RecName: Full=Ecdysone-induced protein 75B, isoform B; AltName:
Full=E75-C; AltName: Full=Nuclear receptor subfamily 1
group D member 3, isoform B
gi|23093216|gb|AAF49282.3| Ecdysone-induced protein 75B, isoform B [Drosophila melanogaster]
gi|383291995|gb|AFH04492.1| Ecdysone-induced protein 75B, isoform E [Drosophila melanogaster]
gi|383291996|gb|AFH04493.1| Ecdysone-induced protein 75B, isoform F [Drosophila melanogaster]
Length = 1412
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 121/210 (57%), Gaps = 31/210 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 479 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 538
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R A S + G ++L +TELD + L + AV +AH
Sbjct: 539 KAR------------ILAAMQQSTQNRGQQRAL--ATELDDQPRL----LAAVLRAHLET 580
Query: 122 CEYTEEGTRRLVRKPVSLP----PSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
CE+T+E + ++ P P+ ++ P + + L Q+F+ ++
Sbjct: 581 CEFTKEKVSAMRQRARDCPSYSMPTLLACP--------LNPAPELQSEQEFSQRFAHVIR 632
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 633 GVIDFAGMIPGFQLLTQDDKFTLLKAGLFD 662
>gi|189182188|gb|ACD81870.1| RE08859p [Drosophila melanogaster]
Length = 1199
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 121/210 (57%), Gaps = 31/210 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 266 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 325
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R A S + G ++L +TELD + L + AV +AH
Sbjct: 326 KAR------------ILAAMQQSTQNRGQQRAL--ATELDDQPRL----LAAVLRAHLET 367
Query: 122 CEYTEEGTRRLVRKPVSLP----PSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
CE+T+E + ++ P P+ ++ P + + L Q+F+ ++
Sbjct: 368 CEFTKEKVSAMRQRARDCPSYSMPTLLACP--------LNPAPELQSEQEFSQRFAHVIR 419
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 420 GVIDFAGMIPGFQLLTQDDKFTLLKAGLFD 449
>gi|195356574|ref|XP_002044735.1| GM11643 [Drosophila sechellia]
gi|194134423|gb|EDW55939.1| GM11643 [Drosophila sechellia]
Length = 1351
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 120/209 (57%), Gaps = 31/209 (14%)
Query: 4 GFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR +
Sbjct: 419 GFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREK 478
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
R A S + G ++L +TELD + L + AV +AH C
Sbjct: 479 AR------------ILAAMQQSTQNRGQQRAL--ATELDDQPRL----LAAVLRAHLETC 520
Query: 123 EYTEEGTRRLVRKPVSLP----PSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
E+T+E + ++ P P+ ++ P + + L Q+F+ ++
Sbjct: 521 EFTKEKVSAMRQRARDCPSYSMPTLLACP--------LNPAPELQSEQEFSQRFAHVIRG 572
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 573 VIDFAGMIPGFQLLTQDDKFTLLKAGLFD 601
>gi|194748054|ref|XP_001956464.1| GF25223 [Drosophila ananassae]
gi|190623746|gb|EDV39270.1| GF25223 [Drosophila ananassae]
Length = 1399
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 120/209 (57%), Gaps = 31/209 (14%)
Query: 4 GFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR +
Sbjct: 441 GFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREK 500
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
R A S + G ++L +TELD + L + AV +AH C
Sbjct: 501 AR------------ILAAMQQSTQNRGQQRAL--ATELDDQPRL----LAAVLRAHLETC 542
Query: 123 EYTEEGTRRLVRKPVSLP----PSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
E+T+E + ++ P P+ ++ P + + L Q+F+ ++
Sbjct: 543 EFTKEKVSAMRQRARDCPSYSMPTLLACP--------LNPAPELQSEQEFSQRFAHVIRG 594
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 595 VIDFAGMIPGFQLLTQDDKFTLLKAGLFD 623
>gi|154147686|ref|NP_001093675.1| nuclear receptor subfamily 1, group D, member 1 [Xenopus (Silurana)
tropicalis]
gi|134025606|gb|AAI35991.1| nr1d1 protein [Xenopus (Silurana) tropicalis]
Length = 522
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 140/299 (46%), Gaps = 78/299 (26%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRF+KCL+VGMSRD+VR+GR+PKR
Sbjct: 136 KGFFRRSIQQNIQYKKCLKNETCSIVRINRNRCQQCRFRKCLSVGMSRDAVRFGRIPKRE 195
Query: 62 RERSDSETGSTR---------------------------------VSTTGAEPPSSLETA 88
++R +E S + T P+SL A
Sbjct: 196 KQRMLAEMHSAMNHIASGHFGRRSPIPLQPHQQQQQQLHPSSSPLMGTAPCHSPTSLPDA 255
Query: 89 --------GPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLP 140
P +S PS +D DVI VS AH Y + V K S
Sbjct: 256 YSQYPQQLTPPRS-PSPEHMD-------DVISQVSMAHRQIFVYANDK----VNKKTSW- 302
Query: 141 PSEVSSPEVASSTAECHESQRLWL-------------------WQQFAAHVTPSVQRVVE 181
+ P + T + H + + L W+ F+ TP+V+ VVE
Sbjct: 303 --DHPQPCWSHDTEDSHGNHNIRLACPMNALHRGGPVRSVQEVWEDFSLSFTPAVREVVE 360
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLEVM 238
FA+ +PGF DL+Q+DQ+ L+K G FE+ + + L + SL F G + +L M
Sbjct: 361 FARHIPGFKDLTQNDQVTLLKAGTFEVLMVRFASLFDAREHSLRFLSGATYSLPELHAM 419
>gi|7911|emb|CAA35923.1| unnamed protein product [Drosophila melanogaster]
Length = 1237
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 121/210 (57%), Gaps = 31/210 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 266 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 325
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R A S + G ++L +TELD + L + AV +AH
Sbjct: 326 KAR------------ILAAMQQSTQNRGQQRAL--ATELDDQPRL----LAAVLRAHLET 367
Query: 122 CEYTEEGTRRLVRKPVSLP----PSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
CE+T+E + ++ P P+ ++ P + + L Q+F+ ++
Sbjct: 368 CEFTKEKVSAMRQRARDCPSYSMPTLLACP--------LNPAPELQSEQEFSQRFAHVIR 419
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 420 GVIDFAGMIPGFQLLTQDDKFTLLKAGLFD 449
>gi|195022280|ref|XP_001985545.1| GH14445 [Drosophila grimshawi]
gi|193899027|gb|EDV97893.1| GH14445 [Drosophila grimshawi]
Length = 1775
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 120/209 (57%), Gaps = 31/209 (14%)
Query: 4 GFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR +
Sbjct: 737 GFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREK 796
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
R A S + G ++L +TELD + L + AV +AH C
Sbjct: 797 AR------------ILAAMQQSTQNRGQQRAL--ATELDDQPRL----LAAVLRAHLETC 838
Query: 123 EYTEEGTRRLVRKPVSLP----PSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
E+T+E + ++ P P+ ++ P + + L Q+F+ ++
Sbjct: 839 EFTKEKVSAMRQRARECPSYSMPTLLACP--------LNPAPELQSEQEFSQRFAHVIRG 890
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 891 VIDFAGMIPGFQLLTQDDKFTLLKAGLFD 919
>gi|7913|emb|CAA35924.1| unnamed protein product [Drosophila melanogaster]
Length = 1394
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 120/209 (57%), Gaps = 31/209 (14%)
Query: 4 GFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR +
Sbjct: 424 GFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREK 483
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
R A S + G ++L +TELD + L + AV +AH C
Sbjct: 484 AR------------ILAAMQQSTQNRGQQRAL--ATELDDQPRL----LAAVLRAHLETC 525
Query: 123 EYTEEGTRRLVRKPVSLP----PSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
E+T+E + ++ P P+ ++ P + + L Q+F+ ++
Sbjct: 526 EFTKEKVSAMRQRARDCPSYSMPTLLACP--------LNPAPELQSEQEFSQRFAHVIRG 577
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 578 VIDFAGMIPGFQLLTQDDKFTLLKAGLFD 606
>gi|112983128|ref|NP_001037042.1| nuclear hormone receptor E75 isoform C [Bombyx mori]
gi|18033301|gb|AAL57048.1|AF332551_1 orphan nuclear receptor E75C [Bombyx mori]
Length = 753
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 115/209 (55%), Gaps = 30/209 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 120 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 179
Query: 62 RER---SDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
+ R + ++ S+R A + ELD L V+ +AH
Sbjct: 180 KARILAAMQQSSSSRAHEQAA-----------------AAELDDAPRLLARVV----RAH 218
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
CE+T + + + P S P +A E Q + Q AHV ++
Sbjct: 219 LDTCEFTRDRVASMRARARDCP--TYSQPTLACPLNPAPELQSEKEFSQRFAHV---IRG 273
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 274 VIDFAGLIPGFQLLTQDDKFTLLKSGLFD 302
>gi|21166368|gb|AAL57049.2|AF332552_1 orphan nuclear receptor E75C splicing variant [Bombyx mori]
Length = 662
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 115/209 (55%), Gaps = 30/209 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 29 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 88
Query: 62 RER---SDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
+ R + ++ S+R A + ELD L V+ +AH
Sbjct: 89 KARILAAMQQSSSSRAHEQAA-----------------AAELDDAPRLLARVV----RAH 127
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
CE+T + + + P S P +A E Q + Q AHV ++
Sbjct: 128 LDTCEFTRDRVASMRARARDCP--TYSQPTLACPLNPAPELQSEKEFSQRFAHV---IRG 182
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 183 VIDFAGLIPGFQLLTQDDKFTLLKSGLFD 211
>gi|162951899|ref|NP_001106079.1| nuclear hormone receptor E75 isoform A [Bombyx mori]
gi|6683592|dbj|BAA89262.1| nuclear hormone receptor E75 A [Bombyx mori]
Length = 697
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 115/209 (55%), Gaps = 30/209 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 64 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 123
Query: 62 RER---SDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
+ R + ++ S+R A + ELD L V+ +AH
Sbjct: 124 KARILAAMQQSSSSRAHEQAA-----------------AAELDDAPRLLARVV----RAH 162
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
CE+T + + + P S P +A E Q + Q AHV ++
Sbjct: 163 LDTCEFTRDRVASMRARARDCP--TYSQPTLACPLNPAPELQSEKEFSQRFAHV---IRG 217
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 218 VIDFAGLIPGFQLLTQDDKFTLLKSGLFD 246
>gi|18033299|gb|AAL57047.1|AF332550_1 orphan nuclear receptor E75A [Bombyx mori]
Length = 697
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 115/209 (55%), Gaps = 30/209 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 64 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 123
Query: 62 RER---SDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
+ R + ++ S+R A + ELD L V+ +AH
Sbjct: 124 KARILAAMQQSSSSRAHEQAA-----------------AAELDDAPRLLARVV----RAH 162
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
CE+T + + + P S P +A E Q + Q AHV ++
Sbjct: 163 LDTCEFTRDRVASMRARARDCP--TYSQPTLACPLNPAPELQSEKEFSQRFAHV---IRG 217
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 218 VIDFAGLIPGFQLLTQDDKFTLLKSGLFD 246
>gi|162951901|ref|NP_001106080.1| nuclear hormone receptor E75 isoform B [Bombyx mori]
gi|6683594|dbj|BAA89263.1| nuclear hormone receptor E75B [Bombyx mori]
Length = 685
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 115/209 (55%), Gaps = 30/209 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 52 RGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 111
Query: 62 RER---SDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
+ R + ++ S+R A + ELD L V+ +AH
Sbjct: 112 KARILAAMQQSSSSRAHEQAA-----------------AAELDDAPRLLARVV----RAH 150
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
CE+T + + + P S P +A E Q + Q AHV ++
Sbjct: 151 LDTCEFTRDRVASMRARARDCP--TYSQPTLACPLNPAPELQSEKEFSQRFAHV---IRG 205
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 206 VIDFAGLIPGFQLLTQDDKFTLLKSGLFD 234
>gi|1706557|sp|P50239.1|E75_GALME RecName: Full=Ecdysone-inducible protein E75; AltName: Full=Nuclear
receptor subfamily 1 group D member 3
gi|508205|gb|AAA19579.1| E75 [Galleria mellonella]
Length = 711
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 116/206 (56%), Gaps = 25/206 (12%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 68 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 127
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R + + STT A E A ++ ELD L V+ +AH
Sbjct: 128 KARI---LAAMQSSTTRAH-----EQA-------AAAELDDGPRLLARVV----RAHLDT 168
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVE 181
CE+T + + P S P +A E Q + Q AHV ++ V++
Sbjct: 169 CEFTRDRVAAMRNGARDCP--TYSQPTLACPLNPAPELQSEKEFSQRFAHV---IRGVID 223
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE 207
FA +PGF L+QDD+ L+K G F+
Sbjct: 224 FAGLIPGFQLLTQDDKFTLLKSGLFD 249
>gi|385892|gb|AAC60499.1| E75 B [Manduca sexta]
Length = 685
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 115/209 (55%), Gaps = 30/209 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
QGFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 52 QGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 111
Query: 62 RER---SDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
+ R + ++ ++R A + ELD L V+ +AH
Sbjct: 112 KARILAAMQQSSTSRAHEQAA-----------------AAELDDAPRLLARVV----RAH 150
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
CE+T + + + P S P +A E Q + Q AHV ++
Sbjct: 151 LDTCEFTRDRVAAMRARARDCP--TYSQPTLACPLNPAPELQSEKEFSQRFAHV---IRG 205
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 206 VIDFAGLIPGFQLLTQDDKFTLLKSGLFD 234
>gi|45685729|gb|AAS75597.1| transcription factor E75B [Plodia interpunctella]
Length = 694
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 112/206 (54%), Gaps = 24/206 (11%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
QGFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 52 QGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 111
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R + + + ++ GP ++ V +AH
Sbjct: 112 KARILAAMQQSSTTRAHEALAAAELDDGP------------------RLLARVVRAHLDT 153
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVE 181
CE+T E + ++ P S P +A E Q + Q AHV ++ V++
Sbjct: 154 CEFTRERVAAMRKRARDCP--TYSQPTLACPLNPAPELQSEKEFSQRFAHV---IRGVID 208
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE 207
FA +PGF L+QDD+ L+K G F+
Sbjct: 209 FAGLIPGFQLLTQDDKFTLLKSGLFD 234
>gi|6015044|sp|O01639.1|E75_CHOFU RecName: Full=Ecdysone-inducible protein E75; AltName: Full=Nuclear
receptor subfamily 1 group D member 3
gi|1945355|gb|AAB52717.1| hormone receptor 75 [Choristoneura fumiferana]
Length = 690
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 115/209 (55%), Gaps = 30/209 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 68 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 127
Query: 62 RER---SDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
+ R + ++ S+R A + ELD L V+ +AH
Sbjct: 128 KARILAAMQQSSSSRAHEQAA-----------------AAELDDAPRLLARVV----RAH 166
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
CE+T + + + P S P +A E Q + Q AHV ++
Sbjct: 167 LDTCEFTRDRVAAMRARARDCP--TYSQPTLACPLNPAPELQSEKEFSQRFAHV---IRG 221
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 222 VIDFAGLIPGFQLLTQDDKFTLLKSGLFD 250
>gi|321476560|gb|EFX87520.1| hypothetical protein DAPPUDRAFT_311954 [Daphnia pulex]
Length = 616
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 130/265 (49%), Gaps = 56/265 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R C+V R+NRNRCQYCR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 207 KGFFRRSQSSVVNYQCPRQKNCVVDRVNRNRCQYCRLQKCLALGMSRDAVKFGRMSKKQR 266
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTY------DVI----- 111
E+ + E R + +S +++ PSS++ QL Y D+
Sbjct: 267 EKVEDEVRYHRAQMKAQQAETSPDSSVFDNQQPSSSD----QLAPYTGGYGGDMSPYTPS 322
Query: 112 -LAVSQAHHSNCEYTEEGTRRLV--------RKPVS-LPPSEVSSP---EVASSTAECHE 158
+ H+N Y GT V + P+ LP S + SP +A + + H
Sbjct: 323 GYGFTPTPHTNQGYDISGTTDYVDSTTFDPRQTPIEPLPDSNLVSPISELLAKTIGDAHS 382
Query: 159 SQRLW----------------------------LWQQFAAHVTPSVQRVVEFAKRVPGFC 190
L+ LW + A +T +Q+++EFAK VPGF
Sbjct: 383 RTCLFSGEHIADMLRKPQDISKVHYYKNMAQEELWLECAQRLTAVIQQIIEFAKMVPGFM 442
Query: 191 DLSQDDQLILIKMGFFELWIGYVSR 215
LSQDDQ++L+K G FEL + +SR
Sbjct: 443 KLSQDDQIVLLKTGSFELAVLRMSR 467
>gi|256070329|ref|XP_002571495.1| nuclear hormone receptor superfamily protein-related [Schistosoma
mansoni]
Length = 990
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 102/181 (56%), Gaps = 43/181 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEY+CLRDGKCLVIRLNRNRCQYCRF+KCLA GMS+DSVRYGR+P+R+R
Sbjct: 310 KGFFRRSIQKQIEYKCLRDGKCLVIRLNRNRCQYCRFRKCLAAGMSKDSVRYGRMPRRTR 369
Query: 63 E--------------RSDSETGSTRVSTTGAE----------PPS-SLETAGPVQSLPSS 97
+ +S T S R+ +T PPS + E +G + ++
Sbjct: 370 GSDCGRDGSDQLMSMQHNSSTNSVRIDSTIGNGSGHVSAFIPPPSCTSELSGNSAVVGAA 429
Query: 98 ------------------TELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSL 139
+ L Y+ IL +SQA+ + YT+E + + +P++L
Sbjct: 430 VATTTTTTNMTTGRYGVCSRPGNDHLGLYETILTISQAYQNFSPYTDEKIKVMRCRPITL 489
Query: 140 P 140
P
Sbjct: 490 P 490
>gi|291238706|ref|XP_002739270.1| PREDICTED: nuclear receptor nhr-7A-like [Saccoglossus kowalevskii]
Length = 446
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 124/247 (50%), Gaps = 14/247 (5%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRR +++Q EY C+R GKC V R RNRC CR+KKC+ +GMS+++VR GR+P + +
Sbjct: 60 KGFFRRCLRRQKEYVCIRGGKCEVDRTKRNRCPSCRYKKCIELGMSKEAVRIGRIPNKQK 119
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E ++ +S + ++ + P+ S PS +++ DV A + C
Sbjct: 120 ETDYADFPLVSISEASIKESAADSSEHPIDSPPSPVVDPEIEVIIADVAKAHRDTAKAYC 179
Query: 123 EYTEEGTRRLVRKPV--SLPPSEVSSPEVAS-----------STAECHESQRLWLWQQFA 169
E + + + + S+P + V SP V +E ++ LW
Sbjct: 180 RNGEWESLKYKKHYLTDSIPDTTVQSPRVGKFEKPEMFASPHQPPSMNEEDKVKLWSLVG 239
Query: 170 AHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSDGM 228
+++ ++R++ F K+VPGF L DQL+L+K G FE L I L ++ T + G
Sbjct: 240 DNLSQYIKRLITFCKKVPGFIHLDHQDQLVLVKAGLFEILTIQDCVELVLYNAFTLNTGH 299
Query: 229 YVTRQQL 235
+ R +
Sbjct: 300 KIPRNMM 306
>gi|391337846|ref|XP_003743275.1| PREDICTED: ecdysone-induced protein 78C-like [Metaseiulus
occidentalis]
Length = 306
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 102/172 (59%), Gaps = 26/172 (15%)
Query: 30 NRNR----CQYCRFKKC---LAVGMSRDSVRYGRVPKRSRERSDSETGSTRVSTTGAEPP 82
N+N+ C+ C K V SVRYGRVPKRSRER++ A
Sbjct: 17 NQNKPFVPCKVCGDKASGYHYGVTSCEGSVRYGRVPKRSRERAEE-----------AHVS 65
Query: 83 SSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPS 142
SS + A ++ EL+TKQL YD+IL +SQAHH++C +TEE TR L+RKP L +
Sbjct: 66 SSDDQAA------AARELETKQLAMYDIILTISQAHHAHCGFTEEKTRGLIRKPALLTAN 119
Query: 143 EVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQ 194
E+ + STA+ E +RL +WQ FA VTPS+Q +VEFAKR+PGF + +Q
Sbjct: 120 EIKLD--SGSTADSMEMERLTMWQHFAGLVTPSIQDIVEFAKRIPGFLEFAQ 169
>gi|321470013|gb|EFX80991.1| hypothetical protein DAPPUDRAFT_8789 [Daphnia pulex]
Length = 83
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/62 (98%), Positives = 62/62 (100%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR
Sbjct: 22 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 81
Query: 63 ER 64
ER
Sbjct: 82 ER 83
>gi|6166165|sp|Q08893.2|E75_MANSE RecName: Full=Ecdysone-inducible protein E75; AltName: Full=Nuclear
receptor subfamily 1 group D member 3
Length = 699
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 115/209 (55%), Gaps = 30/209 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 66 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 125
Query: 62 RER---SDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
+ R + ++ ++R A + ELD L V+ +AH
Sbjct: 126 KARILAAMQQSSTSRAHEQAA-----------------AAELDDAPRLLARVV----RAH 164
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
CE+T + + + P S P +A E Q + Q AHV ++
Sbjct: 165 LDTCEFTRDRVAAMRARARDCP--TYSQPTLACPLNPAPELQSEKEFSQRFAHV---IRG 219
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 220 VIDFAGLIPGFQLLTQDDKFTLLKSGLFD 248
>gi|270014294|gb|EFA10742.1| E75 nuclear receptor [Tribolium castaneum]
Length = 897
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 136/287 (47%), Gaps = 72/287 (25%)
Query: 4 GFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDS----------- 51
GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+
Sbjct: 159 GFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDARASSSPTTGYR 218
Query: 52 --------------------------------------VRYGRVPKRSRERSDSETGSTR 73
VR+GRVPKR + R + +
Sbjct: 219 AAGAHVMGESGNQRCKMGEELPILKGILNGVVEYHNAPVRFGRVPKREKARILAAMQQSS 278
Query: 74 VSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLV 133
S SLE A + EL+ +Q L V+ +AH C++T E ++
Sbjct: 279 NS-------RSLEKA-------VAAELEDEQRLLATVV----RAHIDTCDFTREKVEPML 320
Query: 134 RKPVSLPPSEVSSPEVASSTAECHE--SQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCD 191
+ P P +A + + + L Q F+ +P+++ VVEFAKR+PGF
Sbjct: 321 ARAREQPSYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGVVEFAKRIPGFSL 380
Query: 192 LSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLE 236
L+QDDQ+ L+K G FE+ + ++ + T SS+ +G + R +
Sbjct: 381 LAQDDQVTLLKAGVFEVLLVRLACMFDTQTSSMICLNGQVLKRDSIH 427
>gi|7110506|gb|AAF36970.1|AF230281_1 nuclear receptor 3 [Aedes aegypti]
Length = 468
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 136/288 (47%), Gaps = 73/288 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R+ +C+V R+NRNRCQYCR +KCL +GMSRD+V++GR+ K+ R
Sbjct: 53 KGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 112
Query: 63 ERSDSETGSTRV---STTGAEPPSS------------LETAG------------------ 89
E+ + E R + + A P SS L G
Sbjct: 113 EKVEDEVRFHRAQMRAQSDAAPDSSVFDTQTPSSSDQLHHGGYNGYAYNNEVGYGSPYGY 172
Query: 90 -----PVQSL----------------PSSTELDTKQLLTY------DVILAVSQAHHSNC 122
P Q++ P ST +D+ + + DV++ H+N
Sbjct: 173 STSVTPQQTMGYDISADYVDSTTTYEPRSTIIDSDFISGHTEGDINDVLIKTLAEAHANT 232
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ E + RK S +V + SQ LW A +T +Q+++EF
Sbjct: 233 NHKLEIVHDMFRK----------SQDVTRIMYYKNMSQE-ELWLDCAEKLTAMIQQIIEF 281
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLT--TDSSLTFSDGM 228
AK +PGF LSQDDQ++L+K G FEL I +SRL + +S+ + D M
Sbjct: 282 AKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLMDLSTNSVLYGDIM 329
>gi|389614467|dbj|BAM20281.1| nuclear hormone receptor E75A, partial [Papilio xuthus]
Length = 423
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 115/209 (55%), Gaps = 30/209 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 63 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 122
Query: 62 RER---SDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
+ R + ++ S+R A + EL+ L V+ +AH
Sbjct: 123 KARILAAMQQSSSSRAHEQAA-----------------AAELEDAPRLLARVV----RAH 161
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
CE+T + + + P S P +A E Q + Q AHV ++
Sbjct: 162 LDTCEFTRDRVAAMRARARDCP--TYSQPTLACPLNPAPELQSEKEFSQRFAHV---IRG 216
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 217 VIDFAGLIPGFQLLTQDDKFTLLKSGLFD 245
>gi|157123672|ref|XP_001660273.1| expressed protein (HR3) [Aedes aegypti]
gi|108874313|gb|EAT38538.1| AAEL009588-PA [Aedes aegypti]
Length = 468
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 136/288 (47%), Gaps = 73/288 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R+ +C+V R+NRNRCQYCR +KCL +GMSRD+V++GR+ K+ R
Sbjct: 53 KGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 112
Query: 63 ERSDSETGSTRV---STTGAEPPSS------------LETAG------------------ 89
E+ + E R + + A P SS L G
Sbjct: 113 EKVEDEVRFHRAQMRAQSDAAPDSSVFDTQTPSSSDQLHHGGYNGYAYNNEVGYGSPYGY 172
Query: 90 -----PVQSL----------------PSSTELDTKQLLTY------DVILAVSQAHHSNC 122
P Q++ P ST +D+ + + DV++ H+N
Sbjct: 173 STSVTPQQTMGYDISADYVDSTTTYEPRSTIIDSDFISGHTEGDINDVLIKTLAEAHANT 232
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ E + RK S +V + SQ LW A +T +Q+++EF
Sbjct: 233 NHKLEIVHDMFRK----------SQDVTRIMYYKNMSQE-ELWLDCAEKLTAMIQQIIEF 281
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLT--TDSSLTFSDGM 228
AK +PGF LSQDDQ++L+K G FEL I +SRL + +S+ + D M
Sbjct: 282 AKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLMDLSTNSVLYGDIM 329
>gi|341903615|gb|EGT59550.1| CBN-SEX-1 protein [Caenorhabditis brenneri]
Length = 516
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 117/240 (48%), Gaps = 39/240 (16%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRV---PK 59
+GFFRRSIQ++I+YRCL+ C + R +RNRCQ+CRFKKCL GMS+DSVR R PK
Sbjct: 168 KGFFRRSIQRKIDYRCLKQQVCEIRRDSRNRCQFCRFKKCLDAGMSKDSVRQVRFKGNPK 227
Query: 60 RSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH 119
SDS+ + S+T EP S + I + Q +
Sbjct: 228 NETVSSDSDGFVS--SSTSPEPDSEMNA----------------------FIYHLVQLYE 263
Query: 120 SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRV 179
+ C +T R +V KP +L + S A + RL WQ FA T ++ +
Sbjct: 264 ATCNHTNMKVRHMVAKPANL---------IISDDAVLN---RLNAWQIFANEFTNEMKDM 311
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYVTRQQLEVMY 239
V FA+ +P L Q+D+ L+K F L+ + R + L DG + + L+V+Y
Sbjct: 312 VAFAREIPRMDRLKQNDKACLLKKNMFLLYFLRMIRGLSSKGLLLKDGRLIDFKALQVLY 371
>gi|218505955|gb|ABN49269.2| IP15960p [Drosophila melanogaster]
Length = 487
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 134/289 (46%), Gaps = 74/289 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R+ +C+V R+NRNRCQYCR +KCL +GMSRD+V++GR+ K+ R
Sbjct: 72 KGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 131
Query: 63 ERSDSETGSTRV---STTGAEPPSSL---------------------------------- 85
E+ + E R + + A P SS+
Sbjct: 132 EKVEDEVRFHRAQMRAQSDAAPDSSVYDTQTPSSSDQLHHNNYNSYSGGYSNNEVGYGSP 191
Query: 86 ----ETAGPVQSL---------------PSSTELDTKQLL-----TYDVILAVSQAHHSN 121
+ P Q++ P ST +D + ++ DV++ H+N
Sbjct: 192 YGYSASVTPQQTMQYDISADYVDSTTYEPRSTIIDPEFIIHADGDINDVLIKTLAEAHAN 251
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVE 181
E + RK P+V+ + Q LW A +T +Q ++E
Sbjct: 252 TNTKLEAVHDMFRK----------QPDVSRILYYKNLGQE-ELWLDCAEKLTQMIQNIIE 300
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGM 228
FAK +PGF LSQDDQ++L+K G FEL I +SRL + +++ + D M
Sbjct: 301 FAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDLSQNAVLYGDVM 349
>gi|20151433|gb|AAM11076.1| GH21112p [Drosophila melanogaster]
gi|220947174|gb|ACL86130.1| Hr46-PB [synthetic construct]
gi|220952516|gb|ACL88801.1| Hr46-PB [synthetic construct]
Length = 444
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 129/287 (44%), Gaps = 72/287 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R+ +C+V R+NRNRCQYCR +KCL +GMSRD+V++GR+ K+ R
Sbjct: 31 KGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 90
Query: 63 ERSDSETGSTRV---STTGAEPPSSL---------------------------------- 85
E+ + E R + + A P SS+
Sbjct: 91 EKVEDEVRFHRAQMRAQSDAAPDSSVYDTQTPSSSDQLHHNNYNSGGYSNNEVGYGSPYG 150
Query: 86 --ETAGPVQSLPSSTELDTKQLLTY--------------------DVILAVSQAHHSNCE 123
+ P Q++ D TY DV++ H+N
Sbjct: 151 YSASVTPQQTMQYDISADYVDSTTYEPRSTIIDPEFISHADGDINDVLIKTLAEAHANTN 210
Query: 124 YTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFA 183
E + RK P+V+ + Q LW A +T +Q ++EFA
Sbjct: 211 TKLEAVHDMFRK----------QPDVSRILYYKNLGQE-ELWLDCAEKLTQMIQNIIEFA 259
Query: 184 KRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGM 228
K +PGF LSQDDQ++L+K G FEL I +SRL + +++ + D M
Sbjct: 260 KLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDLSQNAVLYGDVM 306
>gi|161076500|ref|NP_001097256.1| hormone receptor-like in 46, isoform D [Drosophila melanogaster]
gi|157400270|gb|ABV53751.1| hormone receptor-like in 46, isoform D [Drosophila melanogaster]
Length = 456
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 129/287 (44%), Gaps = 72/287 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R+ +C+V R+NRNRCQYCR +KCL +GMSRD+V++GR+ K+ R
Sbjct: 43 KGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 102
Query: 63 ERSDSETGSTRV---STTGAEPPSSL---------------------------------- 85
E+ + E R + + A P SS+
Sbjct: 103 EKVEDEVRFHRAQMRAQSDAAPDSSVYDTQTPSSSDQLHHNNYNSGGYSNNEVGYGSPYG 162
Query: 86 --ETAGPVQSLPSSTELDTKQLLTY--------------------DVILAVSQAHHSNCE 123
+ P Q++ D TY DV++ H+N
Sbjct: 163 YSASVTPQQTMQYDISADYVDSTTYEPRSTIIDPEFISHADGDINDVLIKTLAEAHANTN 222
Query: 124 YTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFA 183
E + RK P+V+ + Q LW A +T +Q ++EFA
Sbjct: 223 TKLEAVHDMFRK----------QPDVSRILYYKNLGQE-ELWLDCAEKLTQMIQNIIEFA 271
Query: 184 KRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGM 228
K +PGF LSQDDQ++L+K G FEL I +SRL + +++ + D M
Sbjct: 272 KLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDLSQNAVLYGDVM 318
>gi|189239421|ref|XP_974561.2| PREDICTED: similar to HR3 [Tribolium castaneum]
Length = 499
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 127/271 (46%), Gaps = 58/271 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R+ C+V R+NRNRCQYCR +KCL +GMSRD+V++GR+ K+ R
Sbjct: 80 KGFFRRSQSSVVNYQCPRNKNCVVDRVNRNRCQYCRLQKCLRLGMSRDAVKFGRMSKKQR 139
Query: 63 ERSDSET----GSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDV-------- 110
E+ + E R + A S E P S + DV
Sbjct: 140 EKVEDEVRFHRAQLRAQSDSAPDSSVFEQQTPSSSDQLHHSYNGGYTYNSDVSAYTPAYY 199
Query: 111 -----ILAVSQAHHSNCEYTE--------------EGTRRLVRKPVSLPPSEVS---SPE 148
+ A S + + +Y + T L+ V+ PS++S S
Sbjct: 200 TNTTQVQANSMGYDISADYVDSTTAYDPRPGLDTLNDTGSLMANVVTTDPSQISELLSKT 259
Query: 149 VASS-TAEC--------------HESQRLW---------LWQQFAAHVTPSVQRVVEFAK 184
++ + T C H+ RL LW + A +T +Q+++EFAK
Sbjct: 260 ISDAHTRTCLYSLEHIHEMFRKPHDLSRLLYYKNMAHEELWLECAQKLTTIIQQIIEFAK 319
Query: 185 RVPGFCDLSQDDQLILIKMGFFELWIGYVSR 215
VPGF LSQDDQ++L+K G FEL I +SR
Sbjct: 320 MVPGFMKLSQDDQIVLLKAGSFELAIIRMSR 350
>gi|195442298|ref|XP_002068895.1| GK18019 [Drosophila willistoni]
gi|194164980|gb|EDW79881.1| GK18019 [Drosophila willistoni]
Length = 524
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 124/275 (45%), Gaps = 72/275 (26%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R+ +C+V R+NRNRCQYCR +KCL +GMSRD+V++GR+ K+ R
Sbjct: 74 KGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 133
Query: 63 ERSDSETGSTRV---STTGAEPPSSL---------------------------------- 85
E+ + E R + + A P SS+
Sbjct: 134 EKVEDEVRFHRAQMRAQSDAAPDSSVYDTQTPSSSDQLHHNNYNSYSGGYSNNEVGYGSP 193
Query: 86 ----ETAGPVQSL---------------PSSTELDTKQLLTYD-----VILAVSQAHHSN 121
+ P Q++ P ST +D + + D V++ H+N
Sbjct: 194 YGYSASVTPQQTMQYDISADYVDSTTYEPRSTMIDPEFISHADGDINDVLIKTLAEAHAN 253
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVE 181
E + RKP L S + LW A +T +Q ++E
Sbjct: 254 TNTKLEAVHDMFRKPQDL-----------SRIIYYKNLGQEELWLDCAEKLTQMIQNIIE 302
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL 216
FAK +PGF LSQDDQ++L+K G FEL I +SRL
Sbjct: 303 FAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRL 337
>gi|7517|emb|CAA33611.1| unnamed protein product [Drosophila melanogaster]
Length = 1443
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 115/207 (55%), Gaps = 27/207 (13%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 475 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 534
Query: 62 RERSDSETG-STRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHS 120
+ R + R++ + P S T+ S P AH
Sbjct: 535 KARIWRPCNRAPRIAASSDPSPPSWMTSH-ASSPPCCC------------------AHLE 575
Query: 121 NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVV 180
CE+T+E + R LP + + +++ A E Q + Q AHV ++ V+
Sbjct: 576 TCEFTKEKVSAM-RHGRGLPSTPCHTSGLSAEPAP--ELQSEQEFSQRFAHV---IRGVI 629
Query: 181 EFAKRVPGFCDLSQDDQLILIKMGFFE 207
+FA +PGF L+QDD+ L+K G F+
Sbjct: 630 DFAGMIPGFQLLTQDDKFTLLKAGLFD 656
>gi|195028616|ref|XP_001987172.1| GH20117 [Drosophila grimshawi]
gi|193903172|gb|EDW02039.1| GH20117 [Drosophila grimshawi]
Length = 487
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 124/275 (45%), Gaps = 72/275 (26%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R+ +C+V R+NRNRCQYCR +KCL +GMSRD+V++GR+ K+ R
Sbjct: 72 KGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 131
Query: 63 ERSDSETGSTRV---STTGAEPPSSL---------------------------------- 85
E+ + E R + + A P SS+
Sbjct: 132 EKVEDEVRFHRAQMRAQSDAAPDSSVYDTQTPSSSDQLQHTNYNSYSGGYSSNEVGYGSP 191
Query: 86 ----ETAGPVQSL---------------PSSTELDTKQLLTYD-----VILAVSQAHHSN 121
+ P Q++ P ST +D + + D V++ H+N
Sbjct: 192 YGYSASVTPQQTMQYDISADYVDSTTYEPRSTMIDPEFISHADGDINDVLIKTLAEAHAN 251
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVE 181
E + RKP L S + LW A +T +Q ++E
Sbjct: 252 TNTKLESVNDMFRKPQDL-----------SRILYYKNLGQEELWLDCAEKLTQMIQNIIE 300
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL 216
FAK +PGF LSQDDQ++L+K G FEL I +SRL
Sbjct: 301 FAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRL 335
>gi|313225480|emb|CBY06954.1| unnamed protein product [Oikopleura dioica]
Length = 520
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 122/243 (50%), Gaps = 29/243 (11%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I YR C + G+C + R+NRNRCQYCRFKKCL VGMSRD+V+YGR+PK+
Sbjct: 145 KGFFRRTISNHYAYRQCPKQGQCKIYRMNRNRCQYCRFKKCLDVGMSRDAVKYGRIPKKI 204
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYD----VILAVSQA 117
+ S+ R AE + T + + + +L ++D V+ S A
Sbjct: 205 K----SQMIQNRKEQMIAEKMKTF-TEATLGAEQIANQLHKAHAASFDLTQKVVFVGSTA 259
Query: 118 ---HHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
++ + ++G R+ P + +WQ F+ +P
Sbjct: 260 VVSRNARRMHAKQGILRIFTGDERQFPLGFEYAQ--------------QIWQDFSDQFSP 305
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTT--DSSLTFSDGMYVTR 232
+V+ VV+FA R+ F L QDDQ+ L+K G FE+ I + L +L FSDG T+
Sbjct: 306 AVREVVDFATRLSSFRALDQDDQVQLMKSGAFEVIITRFASLYDPQTRTLVFSDGKRYTK 365
Query: 233 QQL 235
+ L
Sbjct: 366 EDL 368
>gi|195383602|ref|XP_002050515.1| GJ20161 [Drosophila virilis]
gi|194145312|gb|EDW61708.1| GJ20161 [Drosophila virilis]
Length = 487
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 131/289 (45%), Gaps = 74/289 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R+ +C+V R+NRNRCQYCR +KCL +GMSRD+V++GR+ K+ R
Sbjct: 72 KGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 131
Query: 63 ERSDSETGSTRV---STTGAEPPSSL---------------------------------- 85
E+ + E R + + A P SS+
Sbjct: 132 EKVEDEVRFHRAQMRAQSDAAPDSSVYDTQTPSSSDQLQHNNYNSYSGGYSNNEVGYGSP 191
Query: 86 ----ETAGPVQSL---------------PSSTELDTKQLLTYD-----VILAVSQAHHSN 121
+ P Q++ P ST +D + + D V++ H+N
Sbjct: 192 YGYSASVTPQQTMQYDISADYVDSTTYEPRSTMIDPEFISHADGDINDVLIKTLSEAHAN 251
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVE 181
E + RKP L S + LW A +T +Q ++E
Sbjct: 252 TNTKLESVHDMFRKPQDL-----------SRILYYKNLGQEELWLDCAEKLTQMIQNIIE 300
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGM 228
FAK +PGF LSQDDQ++L+K G FEL I +SRL + +++ + D M
Sbjct: 301 FAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDLSQNAVLYGDVM 349
>gi|28573920|ref|NP_788301.1| hormone receptor-like in 46, isoform C [Drosophila melanogaster]
gi|28380972|gb|AAO41453.1| hormone receptor-like in 46, isoform C [Drosophila melanogaster]
Length = 694
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 129/287 (44%), Gaps = 72/287 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R+ +C+V R+NRNRCQYCR +KCL +GMSRD+V++GR+ K+ R
Sbjct: 281 KGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 340
Query: 63 ERSDSETGSTRV---STTGAEPPSSL---------------------------------- 85
E+ + E R + + A P SS+
Sbjct: 341 EKVEDEVRFHRAQMRAQSDAAPDSSVYDTQTPSSSDQLHHNNYNSGGYSNNEVGYGSPYG 400
Query: 86 --ETAGPVQSLPSSTELDTKQLLTY--------------------DVILAVSQAHHSNCE 123
+ P Q++ D TY DV++ H+N
Sbjct: 401 YSASVTPQQTMQYDISADYVDSTTYEPRSTIIDPEFISHADGDINDVLIKTLAEAHANTN 460
Query: 124 YTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFA 183
E + RK P+V+ + Q LW A +T +Q ++EFA
Sbjct: 461 TKLEAVHDMFRK----------QPDVSRILYYKNLGQE-ELWLDCAEKLTQMIQNIIEFA 509
Query: 184 KRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGM 228
K +PGF LSQDDQ++L+K G FEL I +SRL + +++ + D M
Sbjct: 510 KLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDLSQNAVLYGDVM 556
>gi|1498152|dbj|BAA13143.1| retinoic acid receptor homologue [Polyandrocarpa misakiensis]
Length = 347
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 125/237 (52%), Gaps = 30/237 (12%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS+QK ++Y C R+ C++ + R+RCQYCR +KC VGM ++SVR R KR +
Sbjct: 4 KGFFRRSVQKNMQYTCHRNKNCVINKSTRSRCQYCRLQKCFQVGMLKESVRNDRNKKRGK 63
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E+ D +TG T S E + E + S+ + LDT + N
Sbjct: 64 EK-DGKTGDTSPSGQPEEIVVTPEIEN-IVSVVAKAHLDT-----------FPKNEDLNK 110
Query: 123 EYTEEGTRRLVRKPVSLP-PSEVS-SPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVV 180
T EG KP+S P PS+ S SP + LW +F+ T S+ ++V
Sbjct: 111 YNTAEGQG---DKPLSPPTPSDASGSPPPVD----------VKLWSKFSDLSTKSIIKIV 157
Query: 181 EFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRL-TTDSSLTFSDGMYVTRQQL 235
EFAK VPGF DL+ DQ+ L+K E L+ SR ++ +++FSDG+ + R QL
Sbjct: 158 EFAKSVPGFTDLTIADQITLLKSACLEILFFRICSRYDNSNDTMSFSDGLTLNRDQL 214
>gi|195120906|ref|XP_002004962.1| GI20211 [Drosophila mojavensis]
gi|193910030|gb|EDW08897.1| GI20211 [Drosophila mojavensis]
Length = 487
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 124/275 (45%), Gaps = 72/275 (26%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R+ +C+V R+NRNRCQYCR +KCL +GMSRD+V++GR+ K+ R
Sbjct: 72 KGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 131
Query: 63 ERSDSETGSTRV---STTGAEPPSSL---------------------------------- 85
E+ + E R + + A P SS+
Sbjct: 132 EKVEDEVRFHRAQMRAQSDAAPDSSVYDTQTPSSSDQLQHTNYNSYSGGYSNNEVGYGSP 191
Query: 86 ----ETAGPVQSL---------------PSSTELDTKQLLTYD-----VILAVSQAHHSN 121
+ P Q++ P ST +D + + D V++ H+N
Sbjct: 192 YGYSASVTPQQTMQYDISADYVDSTTYEPRSTMIDPEFISHADGDINDVLIKTLAEAHAN 251
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVE 181
E + RKP L S + LW A +T +Q ++E
Sbjct: 252 TNTKLESVHDMFRKPQDL-----------SRILYYKNLGQEDLWLDCAEKLTQMIQNIIE 300
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL 216
FAK +PGF LSQDDQ++L+K G FEL I +SRL
Sbjct: 301 FAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRL 335
>gi|3046863|dbj|BAA25569.1| retinoic acid receptor homologue [Polyandrocarpa misakiensis]
Length = 434
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 125/237 (52%), Gaps = 30/237 (12%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS+QK ++Y C R+ C++ + R+RCQYCR +KC VGM ++SVR R KR +
Sbjct: 91 KGFFRRSVQKNMQYTCHRNKNCVINKSTRSRCQYCRLQKCFQVGMLKESVRNDRNKKRGK 150
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E+ D +TG T S E + E + S+ + LDT + N
Sbjct: 151 EK-DGKTGDTSPSGQPEEIVVTPEIEN-IVSVVAKAHLDT-----------FPKNEDLNK 197
Query: 123 EYTEEGTRRLVRKPVSLP-PSEVS-SPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVV 180
T EG KP+S P PS+ S SP + LW +F+ T S+ ++V
Sbjct: 198 YNTAEGQG---DKPLSPPTPSDASGSPPPVD----------VKLWSKFSDLSTKSIIKIV 244
Query: 181 EFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRL-TTDSSLTFSDGMYVTRQQL 235
EFAK VPGF DL+ DQ+ L+K E L+ SR ++ +++FSDG+ + R QL
Sbjct: 245 EFAKSVPGFTDLTIADQITLLKSACLEILFFRICSRYDNSNDTMSFSDGLTLNRDQL 301
>gi|419590183|dbj|BAM66777.1| retinoic acid receptor [Polyandrocarpa misakiensis]
Length = 503
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 125/235 (53%), Gaps = 26/235 (11%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS+QK ++Y C R+ C++ + R+RCQYCR +KC VGM ++SVR R KR +
Sbjct: 160 KGFFRRSVQKNMQYTCHRNKNCVINKSTRSRCQYCRLQKCFQVGMLKESVRNDRNKKRGK 219
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E+ D +TG T S G + + + E++ +++ V++AH
Sbjct: 220 EK-DGKTGDTSPS-------------GQPEEIVVTPEIE-------NIVSVVAKAHLDTF 258
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E+ + + P +P AS + + + LW +F+ T S+ ++VEF
Sbjct: 259 PKNEDLNKYNTAEGQGDKPLSPPTPSDASGSPPPVDVK---LWSKFSDLSTKSIIKIVEF 315
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRL-TTDSSLTFSDGMYVTRQQL 235
AK VPGF DL+ DQ+ L+K E L+ SR ++ +++FSDG+ + R QL
Sbjct: 316 AKSVPGFTDLTIADQITLLKSACLEILFFRICSRYDNSNDTMSFSDGLTLNRDQL 370
>gi|71990178|ref|NP_001024662.1| Protein SEX-1 [Caenorhabditis elegans]
gi|1705961|sp|P41830.2|CNR14_CAEEL RecName: Full=Steroid hormone receptor family member cnr14;
AltName: Full=Nuclear receptor subfamily 1 group G
member 1
gi|1203792|gb|AAA96982.1| steroid hormone receptor family member CNR14 [Caenorhabditis
elegans]
gi|3877091|emb|CAA90722.1| Protein SEX-1 [Caenorhabditis elegans]
Length = 534
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 121/237 (51%), Gaps = 35/237 (14%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQ++I+YRCL+ C + R +RNRCQYCRFKKCL GMS+DSVR ++ R+
Sbjct: 172 KGFFRRSIQRKIDYRCLKQQVCEIKRESRNRCQYCRFKKCLDSGMSKDSVR--QMKFRNA 229
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
R D S V + +L E+D V AV +AH +
Sbjct: 230 MRDDKSPDSVFVPE--------------ISTLERQEEVDA-------VYEAVLRAHTTFS 268
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
YT+ R +V +P ++ +E S + RL WQ +A + ++ VV F
Sbjct: 269 FYTDIKIRSIVARPFNVRINEDS------------KMNRLNAWQIYAHEIDVDIKEVVNF 316
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYVTRQQLEVMY 239
K +P F ++ +D+ +L++ F L++ + R ++ L DG + + L+++Y
Sbjct: 317 VKEIPKFNFINGNDKAVLLRKNAFPLYLLRIVRGMSNRGLMLRDGRLIDFKSLQLLY 373
>gi|3882948|gb|AAC77795.1| SEX-1 [Caenorhabditis elegans]
Length = 556
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 121/237 (51%), Gaps = 35/237 (14%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQ++I+YRCL+ C + R +RNRCQYCRFKKCL GMS+DSVR ++ R+
Sbjct: 172 KGFFRRSIQRKIDYRCLKQQVCEIKRESRNRCQYCRFKKCLDSGMSKDSVR--QMKFRNA 229
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
R D S V + +L E+D V AV +AH +
Sbjct: 230 MRDDKSPDSVFVPE--------------ISTLERQEEVDA-------VYEAVLRAHTTFS 268
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
YT+ R +V +P ++ +E S + RL WQ +A + ++ VV F
Sbjct: 269 FYTDIKIRSIVARPFNVRINEDS------------KMNRLNAWQIYAHEIDVDIKEVVNF 316
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYVTRQQLEVMY 239
K +P F ++ +D+ +L++ F L++ + R ++ L DG + + L+++Y
Sbjct: 317 VKEIPKFNFINGNDKAVLLRKNAFPLYLLRIVRGMSNRGLMLRDGRLIDFKSLQLLY 373
>gi|10198107|gb|AAG15187.1| sex-1 [Caenorhabditis elegans]
Length = 553
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 121/237 (51%), Gaps = 35/237 (14%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQ++I+YRCL+ C + R +RNRCQYCRFKKCL GMS+DSVR ++ R+
Sbjct: 169 KGFFRRSIQRKIDYRCLKQQVCEIKRESRNRCQYCRFKKCLDSGMSKDSVR--QMKFRNA 226
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
R D S V + +L E+D V AV +AH +
Sbjct: 227 MRDDKSPDSVFVPE--------------ISTLERQEEVDA-------VYEAVLRAHTTFS 265
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
YT+ R +V +P ++ +E S + RL WQ +A + ++ VV F
Sbjct: 266 FYTDIKIRSIVARPFNVRINEDS------------KMNRLNAWQIYAHEIDVDIKEVVNF 313
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYVTRQQLEVMY 239
K +P F ++ +D+ +L++ F L++ + R ++ L DG + + L+++Y
Sbjct: 314 VKEIPKFNFINGNDKAVLLRKNAFPLYLLRIVRGMSNRGLMLRDGRLIDFKSLQLLY 370
>gi|194753930|ref|XP_001959258.1| GF12134 [Drosophila ananassae]
gi|190620556|gb|EDV36080.1| GF12134 [Drosophila ananassae]
Length = 448
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 133/281 (47%), Gaps = 58/281 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R+ +C+V R+NRNRCQYCR +KCL +GMSRD+V++GR+ K+ R
Sbjct: 72 KGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 131
Query: 63 ERSDSETGSTRV---STTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH 119
E+ + E R + + A P SS+ Q+ SS +L +Y + ++ +
Sbjct: 132 EKVEDEVRFHRAQMRAQSDAAPDSSVYD---TQTPSSSDQLHHNNYNSYSGGYSNNEVGY 188
Query: 120 S-----NCEYTEEGTRR------LVRKPVSLPPSEVSSPEVAS------------STAEC 156
+ T + T + V P S + PE S + AE
Sbjct: 189 GSPYGYSASVTPQQTMQYDISADYVDSTTYEPRSTIIDPEFISHADGDINDVLIKTLAEA 248
Query: 157 HESQRLWL---------------------------WQQFAAHVTPSVQRVVEFAKRVPGF 189
H + L W A +T +Q ++EFAK +PGF
Sbjct: 249 HNNTNTKLEAVHDMFRKQPDVSRILYYKNLGPEELWLDCAEKLTQMIQNIIEFAKLIPGF 308
Query: 190 CDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGM 228
LSQDDQ++L+K G FEL I +SRL + +++ + D M
Sbjct: 309 MRLSQDDQILLLKTGSFELAIVRMSRLLDLSQNAVLYGDVM 349
>gi|320543744|ref|NP_788302.2| hormone receptor-like in 46, isoform E [Drosophila melanogaster]
gi|318068560|gb|AAO41454.2| hormone receptor-like in 46, isoform E [Drosophila melanogaster]
Length = 874
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 134/288 (46%), Gaps = 74/288 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R+ +C+V R+NRNRCQYCR +KCL +GMSRD+V++GR+ K+ R
Sbjct: 461 KGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 520
Query: 63 ERSDSETGSTRV---STTGAEPPSSL---------------------------------- 85
E+ + E R + + A P SS+
Sbjct: 521 EKVEDEVRFHRAQMRAQSDAAPDSSVYDTQTPSSSDQLHHNNYNSGGYSNNEVGYGSPYG 580
Query: 86 --ETAGPVQSL---------------PSSTELDTKQLLTYD-----VILAVSQAHHSNCE 123
+ P Q++ P ST +D + + D V++ H+N
Sbjct: 581 YSASVTPQQTMQYDISADYVDSTTYEPRSTIIDPEFISHADGDINDVLIKTLAEAHANTN 640
Query: 124 YTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVEF 182
E + RK P+V+ + Q LWL A +T +Q ++EF
Sbjct: 641 TKLEAVHDMFRK----------QPDVSRILYYKNLGQEELWL--DCAEKLTQMIQNIIEF 688
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGM 228
AK +PGF LSQDDQ++L+K G FEL I +SRL + +++ + D M
Sbjct: 689 AKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDLSQNAVLYGDVM 736
>gi|294854043|gb|ADF43963.1| retinoic acid receptor [Lymnaea stagnalis]
Length = 478
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 130/244 (53%), Gaps = 40/244 (16%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS+QK ++Y C ++ C++ ++ RNRCQYCR +KC+ +GMS+++VR R KR +
Sbjct: 140 KGFFRRSVQKNMQYTCHKEKNCVINKVTRNRCQYCRLQKCVVMGMSKEAVRNDRNKKR-K 198
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
++ +S +G GP + TE D Q+L +V+ AH
Sbjct: 199 QKPESTSG------------------GPDE----VTEDD--QMLIQEVL----DAHRDTT 230
Query: 123 EYTEEGTR--RLVRKPVSLPPSEVSSPEVASSTAECHE-----SQRLWLWQQFAAHVTPS 175
G+ + + SSP VA+ST+E S ++LW++ +
Sbjct: 231 PDGVNGSTLPGSSSGAATSSMAANSSPTVATSTSETKSEDDSGSSGVFLWEKITELSSAG 290
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVS---RLTTDSSLTFSDGMYVTR 232
+ +V+FAK++PGF LS DQ+ L+K E+ I +S L TD ++ FS+G+ +TR
Sbjct: 291 IVMIVDFAKKIPGFLSLSTSDQITLLKAACLEIMILRISIRYELDTD-TMQFSNGLSLTR 349
Query: 233 QQLE 236
+QL+
Sbjct: 350 EQLQ 353
>gi|348535610|ref|XP_003455292.1| PREDICTED: retinoic acid receptor beta-like [Oreochromis niloticus]
Length = 463
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 115/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC AVGMS++SVR R K+
Sbjct: 102 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFAVGMSKESVRNDRNKKKKE 161
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
P L +S +TEL+T +I + +AH
Sbjct: 162 -----------------SPKPDL-----AESYELTTELET-------IIEKIRRAHQE-- 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 191 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKRVPGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ + R Q+
Sbjct: 236 AKRVPGFTGLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQM 290
>gi|146760612|gb|ABQ44494.1| retinoic acid receptor alpha 2 [Oryzias latipes]
Length = 278
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 112/235 (47%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC AVGMS++SVR R K+
Sbjct: 12 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFAVGMSKESVRNDRNKKKKE 71
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
P L S EL +Q +I + +AH
Sbjct: 72 --------------------------SPKLELAESYELSAEQ---ETIIEKIRKAHQE-- 100
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 101 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 145
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKRVPGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ + R Q+
Sbjct: 146 AKRVPGFTALTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQM 200
>gi|432883778|ref|XP_004074348.1| PREDICTED: retinoic acid receptor beta [Oryzias latipes]
Length = 460
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 115/239 (48%), Gaps = 56/239 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC AVGMS++SVR R K+
Sbjct: 96 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFAVGMSKESVRNDRNKKKKE 155
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH--- 119
P L S EL +Q +I + +AH
Sbjct: 156 --------------------------SPKLELAESYELSAEQ---ETIIEKIRKAHQETF 186
Query: 120 -SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
S C+ + T +S+A+ L LW +F+ T + +
Sbjct: 187 PSLCQLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIK 225
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
+VEFAKRVPGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ + R Q+
Sbjct: 226 IVEFAKRVPGFTALTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQM 284
>gi|390339466|ref|XP_781794.3| PREDICTED: nuclear receptor subfamily 1 group D member 1-like
[Strongylocentrotus purpuratus]
Length = 547
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 110/209 (52%), Gaps = 21/209 (10%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRR +++Q EY C+R GKC + R +RNRC CR+KKCL +GMS+D+VR GR+P + +
Sbjct: 112 KGFFRRCLRRQKEYVCVRGGKCEISRQHRNRCPACRYKKCLELGMSKDAVRIGRIPNKQK 171
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ET + E E P + + E T ++I+AV AHHS
Sbjct: 172 -----ETEFVDIEPYIYEEIKDDEDFDPFKDIKVDAE-------TEELIVAVRDAHHSTA 219
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLW---LWQQFAAHVTPSVQRV 179
++ E R+ +E E + + + ++W + Q AA+ ++R+
Sbjct: 220 KFYPEFDD--FREGRWEKDAEEMKREAERLSIDGMDGIQMWCSVVTQALAAY----IKRI 273
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
V F K +PGF L Q DQ++L+K G FE+
Sbjct: 274 VTFCKHIPGFALLCQQDQMVLVKSGLFEI 302
>gi|149062564|gb|EDM12987.1| RAR-related orphan receptor beta (predicted) [Rattus norvegicus]
Length = 452
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 124/265 (46%), Gaps = 70/265 (26%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 42 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 101
Query: 63 E----------------------RSDSETGSTRVSTTGAEPP-----------------S 83
+ ++ETG T + + P S
Sbjct: 102 DSLYAEAEALARVYSSSISNGLSNLNTETGGTYANGHVIDLPKSEGYYNIDSGQPSPDQS 161
Query: 84 SLETAG-------PVQSLPSSTEL------DTKQL---LTYDVILAVSQ----AHHSNCE 123
L+ G P+ L S L + QL +T I ++Q +H C+
Sbjct: 162 GLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITMSEIDRIAQNIIKSHLETCQ 221
Query: 124 YTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFA 183
YT E +L + + E+ + + S A LWQQ A +T ++Q VVEFA
Sbjct: 222 YTMEELHQLAWQTHTY--EEIKAYQSKSREA---------LWQQCAIQITHAIQYVVEFA 270
Query: 184 KRVPGFCDLSQDDQLILIKMGFFEL 208
KR+ GF +L Q+DQ++L+K G E+
Sbjct: 271 KRITGFMELCQNDQILLLKSGCLEV 295
>gi|308459615|ref|XP_003092124.1| CRE-SEX-1 protein [Caenorhabditis remanei]
gi|308254124|gb|EFO98076.1| CRE-SEX-1 protein [Caenorhabditis remanei]
Length = 518
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 120/240 (50%), Gaps = 41/240 (17%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQ++I+YRCL+ C + R +RNRCQYCRF+KC+ GMS+DSVR+ R +++
Sbjct: 169 KGFFRRSIQRKIDYRCLKQQICEIRRDSRNRCQYCRFRKCVEAGMSKDSVRHIR--SKNK 226
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E+ S VST+ SS E + + L + I+ Q H S+
Sbjct: 227 EQHLSPNSDGFVSTS------------------SSPEPNERCLAIAEKII---QLHMSHS 265
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECH---ESQRLWLWQQFAAHVTPSVQRV 179
YT++ R ++ K +L EC ++ RL WQ +A + +Q
Sbjct: 266 SYTDQKVRSMIAKSFNL---------------ECSNDLKTNRLNAWQIYAHEMDREIQNA 310
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYVTRQQLEVMY 239
V F + +P L +D+ +L+K F +++ V R + L DG + + L ++Y
Sbjct: 311 VGFIRDLPQLSFLQGNDKAVLLKTNMFPIYLLRVCRALSAKGLMLEDGRLIDFKALTLLY 370
>gi|443715958|gb|ELU07684.1| hypothetical protein CAPTEDRAFT_168520 [Capitella teleta]
Length = 356
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 123/239 (51%), Gaps = 52/239 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS+QK + Y C ++ C++ + RNRCQYCR +KCLA GMS+++VR R++
Sbjct: 40 KGFFRRSVQKNMVYTCHKEKICVINKTTRNRCQYCRLQKCLATGMSKEAVR----NDRNK 95
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R E G + + AE +S E+ D+I ++ H
Sbjct: 96 KRKTKEEGCSSSTQPQAEELTSEES---------------------DLIECITATH---- 130
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
EYT P+ L ++ +AE +++ LW++ + T + R+V+F
Sbjct: 131 EYT---------FPLILEDEKIKL------SAEDIAREKVILWERVSELSTSGIVRIVDF 175
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTT-----DSSLTFSDGMYVTRQQLE 236
KRVPGF LS DQ+ L+K E+ V RL + D ++TF++G+ +TRQQLE
Sbjct: 176 GKRVPGFQTLSSSDQITLLKSACLEIL---VLRLGSRYHEDDETITFTNGLTLTRQQLE 231
>gi|443700841|gb|ELT99607.1| hypothetical protein CAPTEDRAFT_167148 [Capitella teleta]
Length = 362
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 119/238 (50%), Gaps = 35/238 (14%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVPKR 60
+GFFRR+IQK ++Y C + C + + RN+CQ+CRF+KC+ VGM+ D V R+ KR
Sbjct: 31 KGFFRRTIQKNLQYHCKWNNNCAIDKTTRNQCQFCRFRKCIDVGMATDLVLNEKQRIAKR 90
Query: 61 SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTEL-DTKQLLTYDVILAVSQAHH 119
+ E T A+P + P+S +L D Q + D+++A Q
Sbjct: 91 KLIEDNRERRRAETVTIKAKPDT-----------PTSDDLTDEDQNIIDDIVIAYEQ--- 136
Query: 120 SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRV 179
T V K +P E S E + + +WQQ A +TPS+ +V
Sbjct: 137 ---------TAIKVTKTYPVPDDE-------SVPKEKVDENSIDVWQQLAEVMTPSIVKV 180
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLT-TDSSLTFSDGMYVTRQQL 235
VEFAKRVPGF L+ DDQ++L+K E+ + R + +LT +G+ + + QL
Sbjct: 181 VEFAKRVPGFLQLNVDDQILLLKSCCMEIMCLRAACRYDPVNRTLTLQNGLLLKKNQL 238
>gi|389614469|dbj|BAM20282.1| nuclear hormone receptor E75B, partial [Papilio xuthus]
Length = 228
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 109/200 (54%), Gaps = 30/200 (15%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
QGFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 48 QGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 107
Query: 62 RER---SDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
+ R + ++ S+R A + EL+ L V+ +AH
Sbjct: 108 KARILAAMQQSSSSRAHEQAA-----------------AAELEDAPRLLARVV----RAH 146
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
CE+T + + + P S P +A E Q + Q AHV ++
Sbjct: 147 LDTCEFTRDRVAAMRARARDCP--TYSQPTLACPLNPAPELQSEKEFSQRFAHV---IRG 201
Query: 179 VVEFAKRVPGFCDLSQDDQL 198
V++FA +PGF L+QDD+
Sbjct: 202 VIDFAGLIPGFQLLTQDDKF 221
>gi|198385545|gb|ACH86113.1| molt-regulating transcription factor HaHR3 [Helicoverpa armigera]
Length = 556
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 127/284 (44%), Gaps = 80/284 (28%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R+ C+V R+NRNRCQYCR +KCL +GMSRD+V++GR+ K+ R
Sbjct: 128 KGFFRRSQSTVVNYQCPRNKACVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 187
Query: 63 E-------------RSDSETGSTRVSTTGAEPPSS----------------------LET 87
E R+ ++T V + PSS
Sbjct: 188 EKVEDEVRFHRAQMRAQTDTAPDSVYDAQQQTPSSSDQFHGHYNGYPGYGSPLSSYGYNN 247
Query: 88 AGP-VQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVS-LPPSEVS 145
AGP +QS + Q YDV + +Y + T ++ L P +S
Sbjct: 248 AGPALQSNMGGIQPQAPQQQPYDV----------SADYVDSTTAYEPKQTGGFLDPDFIS 297
Query: 146 SPE------VASSTAECHE-------------------SQRLW--------LWQQFAAHV 172
E + S AE H S+ L+ +W A +
Sbjct: 298 HAEGDISKVLVKSLAEAHANTNPKLEFIHEMFRKPQDVSKLLYYSSMTYEEMWLDCADKL 357
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL 216
T +Q ++EFAK +PGF L+QDDQ++L+K G FEL I +SRL
Sbjct: 358 TGMIQNIIEFAKLIPGFMKLTQDDQILLLKSGSFELAIVRLSRL 401
>gi|39938474|gb|AAK14384.2| molt-regulating transcription factor HHR3 [Helicoverpa armigera]
Length = 556
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 127/284 (44%), Gaps = 80/284 (28%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R+ C+V R+NRNRCQYCR +KCL +GMSRD+V++GR+ K+ R
Sbjct: 128 KGFFRRSQSTVVNYQCPRNKACVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 187
Query: 63 E-------------RSDSETGSTRVSTTGAEPPSS----------------------LET 87
E R+ ++T V + PSS
Sbjct: 188 EKVEDEVRFHRAQMRAQTDTAPDSVYDAQQQTPSSSDQFHGHYNGYPGYGSPLSSYGYNN 247
Query: 88 AGP-VQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVS-LPPSEVS 145
AGP +QS + Q YDV + +Y + T ++ L P +S
Sbjct: 248 AGPALQSNMGGIQPQAPQQQPYDV----------SADYVDSTTAYEPKQTEGFLDPDFIS 297
Query: 146 SPE------VASSTAECHE-------------------SQRLW--------LWQQFAAHV 172
E + S AE H S+ L+ +W A +
Sbjct: 298 HAEGDISKVLVKSLAEAHANTNPKLEFIHEMFRKPQDVSKLLYYSSMTYEEMWLDCADKL 357
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL 216
T +Q ++EFAK +PGF L+QDDQ++L+K G FEL I +SRL
Sbjct: 358 TGMIQNIIEFAKLIPGFMKLTQDDQILLLKSGSFELAIVRLSRL 401
>gi|268578421|ref|XP_002644193.1| C. briggsae CBR-SEX-1 protein [Caenorhabditis briggsae]
Length = 538
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 111/237 (46%), Gaps = 41/237 (17%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQ++I+YRCL+ C + R +RNRCQYCRFKKCL GMS+DSVR KR++
Sbjct: 180 KGFFRRSIQRKIDYRCLKQQFCEIRRDSRNRCQYCRFKKCLDAGMSKDSVRQT---KRNK 236
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ T S ST EP + A + L H C
Sbjct: 237 PPTSDRTVS---STVNVEPDDHIICADRIIDL-----------------------HLKTC 270
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
YT + ++RKP +L + H++ RL W+ F ++ VQ + F
Sbjct: 271 NYTSQKVATMMRKPFNL------------ALGPDHDTNRLNAWKVFGHNIEMEVQNAIYF 318
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYVTRQQLEVMY 239
+ +P +S DD+ L+K F +++ + R ++ + DG L +++
Sbjct: 319 VRDIPRTEFVSGDDKAALLKKNIFGIYLCRIFRSLSEEGMVMHDGRVTNVPTLRLLF 375
>gi|218156204|dbj|BAH03334.1| retinoic acid receptor 2 [Lethenteron camtschaticum]
Length = 479
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 118/236 (50%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R++
Sbjct: 112 KGFFRRSIQKNMVYTCPRDKGCVINKVTRNRCQYCRLQKCFEVGMSKESVRN----DRNK 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
++ D EP +L ++P+ E+ +I V +AH
Sbjct: 168 KKKD---------VAKQEPSETL-------AMPAEMEV---------LIEKVHKAHQE-- 200
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 201 ---------------TFPSLYQLGKYTMNSSADHRVQLDLGLWDKFSELATKCIIKIVEF 245
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AKR+PGF +LS DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 246 AKRLPGFVNLSIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 301
>gi|350537461|ref|NP_001233277.1| retinoic acid receptor, gamma, variant a [Oncorhynchus mykiss]
gi|315466297|emb|CBY83981.1| retinoic acid receptor, gamma, variant a [Oncorhynchus mykiss]
Length = 502
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 113/235 (48%), Gaps = 47/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 98 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKD 157
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + PP S E +G ++ L + VS+AH
Sbjct: 158 VKEE------------LVPPESYELSGELEEL----------------VNKVSKAHQD-- 187
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+AE L LW +F+ T + ++VEF
Sbjct: 188 ---------------TFPSLLQLGKYHTNSSAEQRVQLDLGLWDKFSELSTKCIIKIVEF 232
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 233 AKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 287
>gi|432910610|ref|XP_004078439.1| PREDICTED: retinoic acid receptor beta-like [Oryzias latipes]
Length = 433
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 120/236 (50%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS+QK + Y C RD C++ ++ RNRCQYCR ++C AVGMS++SVR R ++++
Sbjct: 108 KGFFRRSVQKNMVYTCHRDRNCIINKITRNRCQYCRLQRCFAVGMSKESVRNDRSKRKAK 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + V T E + EL + L V+ + +AH
Sbjct: 168 KEA--------VKMTIME----------------TYELTAELGL---VVEKICRAHRETF 200
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + +VVE
Sbjct: 201 ------------------PSLCQLGKYTTNSSSDHRIQLDLGLWDKFSELATKCIVKVVE 242
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
FAKRVPGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ +TR Q+
Sbjct: 243 FAKRVPGFTGLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLTRTQI 298
>gi|158702320|gb|ABW77511.1| retinoic acid receptor gamma a [Salmo salar]
Length = 504
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 113/235 (48%), Gaps = 47/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 98 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKD 157
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + PP S E +G ++ L + VS+AH
Sbjct: 158 VKEE------------LVPPESYELSGELEEL----------------VNKVSKAHQD-- 187
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+AE L LW +F+ T + ++VEF
Sbjct: 188 ---------------TFPSLLQLGKYHTNSSAEQRVQLDLGLWDKFSELSTKCIIKIVEF 232
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 233 AKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 287
>gi|16580809|dbj|BAB71755.1| retinoic acid receptor unknown type [Paralichthys olivaceus]
Length = 287
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 48/237 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS+QK + Y C RD C++ ++ RNRCQYCR ++C A GMSR+SVR R+ ++ +
Sbjct: 16 KGFFRRSVQKNMVYTCHRDRNCIINKITRNRCQYCRLQRCFAAGMSRESVRNDRIRRKGK 75
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + T ++T + LT ++ L V
Sbjct: 76 KEA-----------------------------VKMTIMETYE-LTSELGLIVE------- 98
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
++ R P+ + ++++ H Q L LW +F+ T + +VVE
Sbjct: 99 --------KICRAHTETFPALCQLGKYTTNSSSDHRIQLDLGLWDKFSELATKCIIKVVE 150
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
FAKRVPGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ +TR Q+
Sbjct: 151 FAKRVPGFTGLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLTRTQIH 207
>gi|32026|emb|CAA68398.1| unnamed protein product [Homo sapiens]
Length = 448
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 115/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD D+ + +AH
Sbjct: 161 ETSKQEC---------------------TESYEMTAELD-------DLTEKIRKAHQE-- 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P + +S+A+ L LW +F+ T + ++VEF
Sbjct: 191 ---------------TFPSLCQLAKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|345789100|ref|XP_003433175.1| PREDICTED: retinoic acid receptor beta [Canis lupus familiaris]
Length = 455
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 116/236 (49%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKK 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD LT + A + S C
Sbjct: 168 EPSKQEC---------------------TESYEMTAELDD---LTEKIRKAHQETFPSLC 203
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 204 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 242
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 243 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 298
>gi|17380507|sp|P10826.2|RARB_HUMAN RecName: Full=Retinoic acid receptor beta; Short=RAR-beta; AltName:
Full=HBV-activated protein; AltName: Full=Nuclear
receptor subfamily 1 group B member 2; AltName:
Full=RAR-epsilon
Length = 455
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 116/236 (49%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKK 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD LT + A + S C
Sbjct: 168 ETSKQEC---------------------TESYEMTAELDD---LTEKIRKAHQETFPSLC 203
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 204 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 242
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 243 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 298
>gi|338715049|ref|XP_003363197.1| PREDICTED: retinoic acid receptor beta [Equus caballus]
Length = 455
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 116/236 (49%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKK 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD LT + A + S C
Sbjct: 168 EPSKQEC---------------------TESYEMTAELDD---LTEKIRKAHQETFPSLC 203
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 204 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 242
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 243 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 298
>gi|291399722|ref|XP_002716265.1| PREDICTED: retinoic acid receptor, beta isoform 1 [Oryctolagus
cuniculus]
Length = 455
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 116/236 (49%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKK 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD LT + A + S C
Sbjct: 168 EPSKQEC---------------------TESYEMTAELDD---LTEKIRKAHQETFPSLC 203
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 204 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 242
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 243 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 298
>gi|301782149|ref|XP_002926489.1| PREDICTED: retinoic acid receptor beta-like isoform 1 [Ailuropoda
melanoleuca]
Length = 455
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 116/236 (49%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKK 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD LT + A + S C
Sbjct: 168 EPSKQEC---------------------TESYEMTAELDD---LTEKIRKAHQETFPSLC 203
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 204 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 242
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 243 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 298
>gi|218156234|dbj|BAH03349.1| retinoic acid receptor 2 [Mordacia mordax]
Length = 385
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 114/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+
Sbjct: 18 KGFFRRSIQKNMVYTCPRDKGCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKK- 76
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
EP +L ++P+ E+ +I V +AH
Sbjct: 77 ------------DVAKQEPAETL-------AMPAEMEV---------LIEKVRKAHQE-- 106
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW + + T + ++VEF
Sbjct: 107 ---------------TFPSLYQLGKYTMNSSADHRVQLDLGLWDKLSELATKCIIKIVEF 151
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF +LS DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 152 AKRLPGFVNLSIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 206
>gi|350591001|ref|XP_003483182.1| PREDICTED: retinoic acid receptor beta [Sus scrofa]
Length = 455
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 116/236 (49%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKK 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD LT + A + S C
Sbjct: 168 EPSKQEC---------------------TESYEMTAELDD---LTEKIRKAHQETFPSLC 203
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 204 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 242
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 243 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 298
>gi|192786491|gb|AAW34271.2| retinoic acid receptor beta-2 [Notophthalmus viridescens]
Length = 448
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 117/235 (49%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR ++C VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQRCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E E ++SL + ELD LT + A + S C
Sbjct: 161 EPIKQEC---------------------IESLEMTAELDD---LTEKIRKAHQETFPSLC 196
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+AE L LW +F+ T + ++VEF
Sbjct: 197 QLGKYTT---------------------NSSAEQRIRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|332215376|ref|XP_003256819.1| PREDICTED: retinoic acid receptor beta isoform 1 [Nomascus
leucogenys]
Length = 448
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 116/235 (49%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD LT + A + S C
Sbjct: 161 ETSKQEC---------------------TESYEMTAELDD---LTEKIRKAHQETFSSLC 196
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 197 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|194389368|dbj|BAG61645.1| unnamed protein product [Homo sapiens]
Length = 441
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 116/236 (49%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKK 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD LT + A + S C
Sbjct: 168 ETSKQEC---------------------TESYEMTAELDD---LTEKIRKAHQETFPSLC 203
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 204 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 242
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 243 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 298
>gi|18031835|gb|AAL02361.1| retinoic acid receptor beta-2 [Mesocricetus auratus]
Length = 448
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 115/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD D+ + +AH
Sbjct: 161 EPSKQEC---------------------TESYEMTAELD-------DLTEKIRKAHQE-- 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P + +S+A+ L LW +F+ T + ++VEF
Sbjct: 191 ---------------TFPSLCQLAKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|354474027|ref|XP_003499233.1| PREDICTED: retinoic acid receptor beta-like isoform 2 [Cricetulus
griseus]
Length = 455
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 116/236 (49%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKK 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD LT + A + S C
Sbjct: 168 EPSKQEC---------------------TESYEMTAELDD---LTEKIRKAHQETFPSLC 203
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 204 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 242
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 243 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 298
>gi|431919411|gb|ELK17930.1| Retinoic acid receptor beta [Pteropus alecto]
Length = 448
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 117/235 (49%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E ++S + ELD LT + A + S C
Sbjct: 161 EPSKQEC---------------------MESYEMTAELDD---LTEKIRKAHQETFPSLC 196
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 197 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|34783617|gb|AAH50415.2| RARB protein [Homo sapiens]
Length = 346
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 115/234 (49%), Gaps = 48/234 (20%)
Query: 4 GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRE 63
GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +E
Sbjct: 1 GFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKKE 59
Query: 64 RSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCE 123
S E +S + ELD LT + A + S C+
Sbjct: 60 TSKQEC---------------------TESYEMTAELDD---LTEKIRKAHQETFPSLCQ 95
Query: 124 YTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFA 183
+ T +S+A+ L LW +F+ T + ++VEFA
Sbjct: 96 LGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEFA 134
Query: 184 KRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
KR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 135 KRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 188
>gi|426256480|ref|XP_004021868.1| PREDICTED: retinoic acid receptor beta isoform 2 [Ovis aries]
Length = 455
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 116/236 (49%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKK 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD LT + A + S C
Sbjct: 168 EPSKQEC---------------------TESYEMTAELDD---LTEKIRKAHQETFPSLC 203
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 204 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 242
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 243 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 298
>gi|403289928|ref|XP_003936090.1| PREDICTED: retinoic acid receptor beta [Saimiri boliviensis
boliviensis]
Length = 448
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 114/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD D+ + +AH
Sbjct: 161 ETSKQEC---------------------TESYEMTAELD-------DLTEKIRKAHQE-- 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 191 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|224045384|ref|XP_002197406.1| PREDICTED: retinoic acid receptor beta isoform 3 [Taeniopygia
guttata]
Length = 434
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 117/235 (49%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 88 KGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 146
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E+ ++ + ELD LT + A + S C
Sbjct: 147 EPSKQES---------------------TENYEMTAELDD---LTEKIRKAHQETFPSLC 182
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 183 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 221
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 222 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 276
>gi|224045380|ref|XP_002197385.1| PREDICTED: retinoic acid receptor beta isoform 1 [Taeniopygia
guttata]
Length = 448
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 117/235 (49%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E+ ++ + ELD LT + A + S C
Sbjct: 161 EPSKQES---------------------TENYEMTAELDD---LTEKIRKAHQETFPSLC 196
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 197 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|380800389|gb|AFE72070.1| retinoic acid receptor beta isoform 1, partial [Macaca mulatta]
Length = 433
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 114/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 87 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 145
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD D+ + +AH
Sbjct: 146 ETSKQEC---------------------TESYEMTAELD-------DLTEKIRKAHQE-- 175
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 176 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 220
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 221 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 275
>gi|297287021|ref|XP_001092337.2| PREDICTED: retinoic acid receptor beta isoform 1 [Macaca mulatta]
Length = 458
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 116/236 (49%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 112 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKK 170
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD LT + A + S C
Sbjct: 171 ETSKQEC---------------------TESYEMTAELDD---LTEKIRKAHQETFPSLC 206
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 207 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 245
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 246 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 301
>gi|218156236|dbj|BAH03350.1| retinoic acid receptor 3 [Mordacia mordax]
Length = 407
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 114/239 (47%), Gaps = 56/239 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD KC++ ++ RNRCQYCR ++CL VGMS++SVR R K+
Sbjct: 18 KGFFRRSIQKNMVYTCHRDKKCIINKITRNRCQYCRLQRCLEVGMSKESVRNDRSKKKKE 77
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH--- 119
A P LE P + D+I V +AH
Sbjct: 78 ----------------AVRPEVLEVPPPCPEI-------------EDLIDRVRRAHQETF 108
Query: 120 -SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
S C+ + T + V+L + LW +F+ T + +
Sbjct: 109 PSLCQLGKYTTSNGSGQRVTLDAN---------------------LWDKFSELSTKCIVK 147
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
VEFAKR+PGF L DDQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 148 TVEFAKRIPGFSTLGIDDQITLLKAACLDILILRICTRYTPEHDTMTFSDGLTLNRTQM 206
>gi|14916494|ref|NP_000956.2| retinoic acid receptor beta isoform 1 [Homo sapiens]
gi|114585741|ref|XP_001164404.1| PREDICTED: retinoic acid receptor beta isoform 4 [Pan troglodytes]
gi|395734071|ref|XP_002814046.2| PREDICTED: retinoic acid receptor beta isoform 1 [Pongo abelii]
gi|397511696|ref|XP_003826204.1| PREDICTED: retinoic acid receptor beta [Pan paniscus]
gi|402861717|ref|XP_003895230.1| PREDICTED: retinoic acid receptor beta [Papio anubis]
gi|426339742|ref|XP_004033801.1| PREDICTED: retinoic acid receptor beta isoform 1 [Gorilla gorilla
gorilla]
gi|38173846|gb|AAH60794.1| Retinoic acid receptor, beta [Homo sapiens]
gi|119584758|gb|EAW64354.1| retinoic acid receptor, beta, isoform CRA_a [Homo sapiens]
gi|307685775|dbj|BAJ20818.1| retinoic acid receptor, beta [synthetic construct]
gi|325495539|gb|ADZ17375.1| retinoic acid receptor beta variant 1 [Homo sapiens]
gi|410220772|gb|JAA07605.1| retinoic acid receptor, beta [Pan troglodytes]
Length = 448
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 114/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD D+ + +AH
Sbjct: 161 ETSKQEC---------------------TESYEMTAELD-------DLTEKIRKAHQE-- 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 191 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|158257496|dbj|BAF84721.1| unnamed protein product [Homo sapiens]
Length = 448
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 114/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD D+ + +AH
Sbjct: 161 ETSKQEC---------------------TESYEMTAELD-------DLTEKIRKAHQE-- 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 191 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|354490221|ref|XP_003507258.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Cricetulus
griseus]
Length = 485
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++V
Sbjct: 138 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAV---------- 187
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
R+D V G PP S E + P EL TK VS+AH
Sbjct: 188 -RNDRNKKKKEVKEEG--PPDSYELS------PQLEELITK----------VSKAHQETF 228
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 229 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 270
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 271 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 326
>gi|354490219|ref|XP_003507257.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Cricetulus
griseus]
gi|344239273|gb|EGV95376.1| Retinoic acid receptor gamma [Cricetulus griseus]
Length = 458
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++V
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAV---------- 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
R+D V G PP S E + P EL TK VS+AH
Sbjct: 161 -RNDRNKKKKEVKEEG--PPDSYELS------PQLEELITK----------VSKAHQETF 201
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 202 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 243
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 244 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 299
>gi|45384512|ref|NP_990657.1| retinoic acid receptor beta [Gallus gallus]
gi|3041719|sp|P22448.2|RARB_CHICK RecName: Full=Retinoic acid receptor beta; Short=RAR-beta; AltName:
Full=Nuclear receptor subfamily 1 group B member 2
gi|871040|emb|CAA40617.1| retinoic acid receptor beta,isoform 1 [Gallus gallus]
Length = 455
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 117/236 (49%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKK 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E + E+ ++ + ELD LT + A + S C
Sbjct: 168 EPTKQES---------------------TENYEMTAELDD---LTEKIRKAHQETFPSLC 203
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 204 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 242
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 243 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 298
>gi|94482821|gb|ABF22437.1| thyroid hormone receptor alpha 1 [Takifugu rubripes]
Length = 321
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 123/230 (53%), Gaps = 52/230 (22%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I Y+ C+++ CL++R+NRNRCQ+CRFKKCL+VGMSRD K++
Sbjct: 26 KGFFRRSIQQNINYKMCVKNENCLIMRMNRNRCQHCRFKKCLSVGMSRDVTSSDN--KQA 83
Query: 62 RERSDSETGSTRVSTTGA--EPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH 119
D+ + +ST +P S+ + G + +L++S+A
Sbjct: 84 FRNVDNSGYAFSISTNNNYEQPHSTTNSRGT----------------SVVCLLSLSKA-- 125
Query: 120 SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRV 179
C P++ P VS PE +S +W+ F+ TP+V+ V
Sbjct: 126 --C-------------PLNAWP--VSGPERSSQE----------IWESFSQCFTPAVKEV 158
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDS-SLTFSDG 227
VEFAK +PGF +LSQ DQ++L+K G F+ L + + + + ++TF +G
Sbjct: 159 VEFAKGIPGFQELSQHDQVMLLKSGTFQVLMVRFCTLFNAEKHTVTFLNG 208
>gi|35883|emb|CAA30262.1| unnamed protein product [Homo sapiens]
Length = 448
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 114/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD D+ + +AH
Sbjct: 161 ETSKQEC---------------------TESYEMTAELD-------DLTEKIRKAHQE-- 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 191 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|63786|emb|CAA39997.1| retinoic acid binding protein beta isoform [Gallus gallus]
Length = 455
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 117/236 (49%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKK 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E + E+ ++ + ELD LT + A + S C
Sbjct: 168 EPTKQES---------------------TENYEMTAELDD---LTEKIRKAHQETFPSLC 203
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 204 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 242
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 243 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 298
>gi|133494|sp|P22605.1|RARB_MOUSE RecName: Full=Retinoic acid receptor beta; Short=RAR-beta; AltName:
Full=Nuclear receptor subfamily 1 group B member 2
Length = 482
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 116/236 (49%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 136 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKK 194
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD LT + A + S C
Sbjct: 195 EPSKQEC---------------------TESYEMTAELDD---LTEKIRKAHQETFPSLC 230
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 231 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 269
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 270 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 325
>gi|344288071|ref|XP_003415774.1| PREDICTED: retinoic acid receptor beta isoform 1 [Loxodonta
africana]
Length = 448
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 114/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD D+ + +AH
Sbjct: 161 EPSKQEC---------------------TESYEMTAELD-------DLTETIRKAHQE-- 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 191 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|17367843|sp|Q9W6B3.1|RARB_COTJA RecName: Full=Retinoic acid receptor beta; Short=RAR-beta; AltName:
Full=Nuclear receptor subfamily 1 group B member 2
gi|4566559|gb|AAD23397.1|AF110729_1 retinoic acid receptor beta-1 [Coturnix coturnix]
Length = 455
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 117/236 (49%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKK 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E + E+ ++ + ELD LT + A + S C
Sbjct: 168 EPTKQES---------------------TENYEMTAELDD---LTEKIRKAHQETFPSLC 203
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 204 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 242
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 243 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 298
>gi|64124|emb|CAA78621.1| retinoic acid receptor alpha 2 [Notophthalmus viridescens]
Length = 452
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 112/239 (46%), Gaps = 55/239 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMVYTCHRDKTCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKQ 161
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN- 121
E E + + T E D++ V +AH
Sbjct: 162 EAPKQECTESYIITPEVE----------------------------DLVEKVRKAHQETF 193
Query: 122 ---CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
C+ + T + VSL + LW +F+ T + +
Sbjct: 194 PALCQLGKYTTNNSSEERVSL---------------------DIDLWDKFSELSTKCIIK 232
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
VEFAK++PGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ + R Q+
Sbjct: 233 TVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQM 291
>gi|355560071|gb|EHH16799.1| hypothetical protein EGK_12147 [Macaca mulatta]
Length = 455
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 115/235 (48%), Gaps = 48/235 (20%)
Query: 4 GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRE 63
GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +E
Sbjct: 110 GFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKKE 168
Query: 64 RSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCE 123
S E +S + ELD LT + A + S C+
Sbjct: 169 TSKQEC---------------------TESYEMTAELDD---LTEKIRKAHQETFPSLCQ 204
Query: 124 YTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFA 183
+ T +S+A+ L LW +F+ T + ++VEFA
Sbjct: 205 LGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEFA 243
Query: 184 KRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
KR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 244 KRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 298
>gi|344288073|ref|XP_003415775.1| PREDICTED: retinoic acid receptor beta isoform 2 [Loxodonta
africana]
Length = 455
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 116/236 (49%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKK 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD LT + A + S C
Sbjct: 168 EPSKQEC---------------------TESYEMTAELDD---LTETIRKAHQETFPSLC 203
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 204 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 242
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 243 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 298
>gi|2661449|emb|CAA05769.1| retinoic acid receptor beta2 [Rattus norvegicus]
Length = 291
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 114/236 (48%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-- 159
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ PS E +S + ELD D+ + +AH
Sbjct: 160 -----------------KEPSKQEC---TESYEMTAELD-------DLTEKIRKAHQE-- 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 191 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 291
>gi|218156246|dbj|BAH03355.1| retinoic acid receptor beta [Callorhinchus callorynchus]
Length = 375
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 111/235 (47%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C R+ C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 18 KGFFRRSIQKNMVYTCHREKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 76
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E E + T E D+I + +AH
Sbjct: 77 EAPKQECSESYTMTAELE----------------------------DLIEKICKAHQE-- 106
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 107 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 151
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ + R Q+
Sbjct: 152 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQM 206
>gi|133488|sp|P18514.1|RARA_NOTVI RecName: Full=Retinoic acid receptor alpha; Short=RAR-alpha;
AltName: Full=Nuclear receptor subfamily 1 group B
member 1
gi|64126|emb|CAA35602.1| retinoic acid receptor alpha [Notophthalmus viridescens]
gi|226520|prf||1516344A retinoic acid receptor alpha
Length = 458
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 112/240 (46%), Gaps = 55/240 (22%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 108 KGFFRRSIQKNMVYTCHRDKTCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKQ 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN- 121
E E + + T E D++ V +AH
Sbjct: 168 EAPKQECTESYIITPEVE----------------------------DLVEKVRKAHQETF 199
Query: 122 ---CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
C+ + T + VSL + LW +F+ T + +
Sbjct: 200 PALCQLGKYTTNNSSEERVSL---------------------DIDLWDKFSELSTKCIIK 238
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
VEFAK++PGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ + R Q+
Sbjct: 239 TVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMH 298
>gi|301605652|ref|XP_002932450.1| PREDICTED: retinoic acid receptor beta-like [Xenopus (Silurana)
tropicalis]
Length = 454
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 117/235 (49%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C R+ C++ ++ RNRCQYCR ++C VGMS++SVR R K+
Sbjct: 109 KGFFRRSIQKNMVYTCHREKNCVINKVTRNRCQYCRLQRCFEVGMSKESVRNDRNKKKKE 168
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
PS +E +++ + ELD LT + A + S C
Sbjct: 169 -------------------PSKIEC---IENYEMTAELDD---LTEKIRKAHQETFPSLC 203
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+AE L LW +F+ T + ++VEF
Sbjct: 204 QLGKYTT---------------------NSSAEQRVRLDLGLWDKFSELATKCIIKIVEF 242
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 243 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 297
>gi|226050|prf||1408258A retinoic acid receptor
Length = 448
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 114/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 RGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD D+ + +AH
Sbjct: 161 ETSKQEC---------------------TESYEMTAELD-------DLTEKIRKAHQE-- 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 191 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|149729680|ref|XP_001494165.1| PREDICTED: retinoic acid receptor beta isoform 1 [Equus caballus]
gi|291399724|ref|XP_002716266.1| PREDICTED: retinoic acid receptor, beta isoform 2 [Oryctolagus
cuniculus]
gi|395816622|ref|XP_003781797.1| PREDICTED: retinoic acid receptor beta [Otolemur garnettii]
Length = 448
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 116/235 (49%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD LT + A + S C
Sbjct: 161 EPSKQEC---------------------TESYEMTAELDD---LTEKIRKAHQETFPSLC 196
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 197 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|289629241|ref|NP_001166202.1| retinoic acid receptor beta [Cavia porcellus]
gi|51092411|gb|AAP33792.2| retinoic acid receptor beta [Cavia porcellus]
Length = 410
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 114/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD D+ + +AH
Sbjct: 161 EPSKQEC---------------------TESYEMTAELD-------DLTEKIRKAHQE-- 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 191 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|73989931|ref|XP_850755.1| PREDICTED: retinoic acid receptor beta isoform 2 [Canis lupus
familiaris]
gi|410971533|ref|XP_003992222.1| PREDICTED: retinoic acid receptor beta isoform 1 [Felis catus]
Length = 448
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 116/235 (49%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD LT + A + S C
Sbjct: 161 EPSKQEC---------------------TESYEMTAELDD---LTEKIRKAHQETFPSLC 196
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 197 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|354474025|ref|XP_003499232.1| PREDICTED: retinoic acid receptor beta-like isoform 1 [Cricetulus
griseus]
Length = 448
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 114/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD D+ + +AH
Sbjct: 161 EPSKQEC---------------------TESYEMTAELD-------DLTEKIRKAHQE-- 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 191 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|311268593|ref|XP_001926863.2| PREDICTED: retinoic acid receptor beta isoform 1 [Sus scrofa]
Length = 448
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 116/235 (49%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD LT + A + S C
Sbjct: 161 EPSKQEC---------------------TESYEMTAELDD---LTEKIRKAHQETFPSLC 196
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 197 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|401461796|ref|NP_113717.1| retinoic acid receptor, beta [Rattus norvegicus]
gi|149040008|gb|EDL94092.1| retinoic acid receptor, beta [Rattus norvegicus]
Length = 448
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 114/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD D+ + +AH
Sbjct: 161 EPSKQEC---------------------TESYEMTAELD-------DLTEKIRKAHQE-- 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 191 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|45593124|ref|NP_035373.1| retinoic acid receptor beta [Mus musculus]
gi|8170810|gb|AAB25784.2| retinoic acid nuclear receptor isoform beta 2 [Mus sp.]
gi|49904685|gb|AAH76597.1| Retinoic acid receptor, beta [Mus musculus]
gi|148688696|gb|EDL20643.1| retinoic acid receptor, beta, isoform CRA_a [Mus musculus]
gi|226403|prf||1510302B retinoic acid receptor beta
Length = 448
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 114/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD D+ + +AH
Sbjct: 161 EPSKQEC---------------------TESYEMTAELD-------DLTEKIRKAHQE-- 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 191 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|301782151|ref|XP_002926490.1| PREDICTED: retinoic acid receptor beta-like isoform 2 [Ailuropoda
melanoleuca]
Length = 448
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 116/235 (49%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD LT + A + S C
Sbjct: 161 EPSKQEC---------------------TESYEMTAELDD---LTEKIRKAHQETFPSLC 196
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 197 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|218156240|dbj|BAH03352.1| retinoic acid receptor beta [Lepisosteus platyrhincus]
Length = 360
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 115/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C R+ C++ ++ RNRCQYCR ++C VGMS++SVR R K+ +
Sbjct: 18 KGFFRRSIQKNMVYTCHREKNCVINKVTRNRCQYCRLQRCFEVGMSKESVRNDR-NKKKK 76
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E +E +S + EL+ D+I + +AH
Sbjct: 77 EVPKAEC---------------------TESYELTAELE-------DLIAKIRKAHQE-- 106
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 107 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 151
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKRVPGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ + R Q+
Sbjct: 152 AKRVPGFTGLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQM 206
>gi|426256478|ref|XP_004021867.1| PREDICTED: retinoic acid receptor beta isoform 1 [Ovis aries]
Length = 448
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 114/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD D+ + +AH
Sbjct: 161 EPSKQEC---------------------TESYEMTAELD-------DLTEKIRKAHQE-- 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 191 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|395541032|ref|XP_003772452.1| PREDICTED: retinoic acid receptor gamma [Sarcophilus harrisii]
Length = 463
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++V
Sbjct: 116 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAV---------- 165
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
R+D V G PP S E + ++ L I VS+AH
Sbjct: 166 -RNDRNKKKKEVKEEG--PPDSYELSPQLEEL----------------IAKVSKAHQETF 206
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 207 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 248
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 249 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 304
>gi|146760616|gb|ABQ44496.1| retinoic acid receptor gamma 2 [Oryzias latipes]
Length = 332
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 112/235 (47%), Gaps = 47/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 49 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKD 108
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + P S E +G ++ L + VS+AH
Sbjct: 109 VKEE------------ITLPESYELSGELEEL----------------VNKVSKAHKE-- 138
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+AE L LW +F+ T + ++VEF
Sbjct: 139 ---------------TFPSLCQLGKYTTNSSAEHRVQLDLGLWDKFSELSTKCIIKIVEF 183
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 184 AKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 238
>gi|207028980|ref|NP_001128721.1| retinoic acid receptor, gamma isoform 1 [Rattus norvegicus]
gi|149031940|gb|EDL86852.1| rCG50849 [Rattus norvegicus]
Length = 458
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++V
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAV---------- 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
R+D V G PP + E + P EL TK VS+AH
Sbjct: 161 -RNDRNKKKKEVKEEG--PPDNYELS------PQLEELITK----------VSKAHQETF 201
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 202 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 243
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 244 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 299
>gi|218156230|dbj|BAH03347.1| retinoic acid receptor 3 [Eptatretus burgeri]
Length = 375
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 117/239 (48%), Gaps = 56/239 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD KC+V ++ RNRCQYCR ++CL VGMS++SVR
Sbjct: 18 KGFFRRSIQKNMVYTCHRDKKCVVNKITRNRCQYCRLQRCLEVGMSKESVR--------N 69
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+RS + RV V+ P+ EL+ D+ V +AH
Sbjct: 70 DRSKKKKDVPRVEL--------------VELPPAPPELE-------DLTSRVCRAH---- 104
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWL----WQQFAAHVTPSVQR 178
+E L ++ T QR+ L W +F+ T + R
Sbjct: 105 ---QETFPNLC--------------QLGKYTMTNGSGQRVTLDADLWDKFSDLSTKCIVR 147
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
VEFAKR+PGF L+ DDQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 148 TVEFAKRIPGFSTLAIDDQITLLKAACLDILILRICTRYTPEHDTMTFSDGLTLNRTQM 206
>gi|63754|emb|CAA42077.1| retinoic acid receptor-beta [Gallus gallus]
Length = 448
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 117/235 (49%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E + E+ ++ + ELD LT + A + S C
Sbjct: 161 EPTKQES---------------------TENYEMTAELDD---LTEKIRKAHQETFPSLC 196
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 197 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|62979|emb|CAA40615.1| retinoic acid receptor beta,isoform 4 [Gallus gallus]
Length = 434
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 117/235 (49%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 88 KGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 146
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E + E+ ++ + ELD LT + A + S C
Sbjct: 147 EPTKQES---------------------TENYEMTAELDD---LTEKIRKAHQETFPSLC 182
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 183 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 221
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 222 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 276
>gi|86355087|dbj|BAE78778.1| retinoic acid receptor beta [Pelodiscus sinensis]
Length = 364
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 116/235 (49%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 18 KGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 76
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E ++ + ELD LT + A + S C
Sbjct: 77 EPSKQEF---------------------TENYEMTAELDD---LTEKIRKAHQETFPSLC 112
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 113 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 151
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 152 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 206
>gi|326921997|ref|XP_003207239.1| PREDICTED: retinoic acid receptor beta-like [Meleagris gallopavo]
gi|4566561|gb|AAD23398.1|AF110730_1 retinoic acid receptor beta-2 [Coturnix coturnix]
gi|62977|emb|CAA40616.1| retinoic acid receptor beta [Gallus gallus]
gi|227549|prf||1706356A retinoic acid receptor
Length = 448
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 117/235 (49%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E + E+ ++ + ELD LT + A + S C
Sbjct: 161 EPTKQES---------------------TENYEMTAELDD---LTEKIRKAHQETFPSLC 196
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 197 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|15489203|gb|AAH13709.1| Retinoic acid receptor, gamma [Mus musculus]
Length = 458
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 116/236 (49%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 161
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G LP S EL + QL ++I VS+AH
Sbjct: 162 --NDRNKKKKEVKEEG---------------LPDSYEL-SPQL--EELITKVSKAHQETF 201
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 202 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 243
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 244 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 299
>gi|345312161|ref|XP_003429212.1| PREDICTED: nuclear receptor ROR-gamma-like, partial
[Ornithorhynchus anatinus]
Length = 436
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 118/260 (45%), Gaps = 46/260 (17%)
Query: 1 MFQGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60
M +GFFRRS Q Y C R C + R +RNRCQ+CR +KCLA+GMSRD+V++GR+ K+
Sbjct: 1 MSKGFFRRSQQGAAAYSCSRQRSCPIDRASRNRCQHCRLQKCLALGMSRDAVKFGRMSKK 60
Query: 61 SRERSDSETGSTRVST---------------------------TGAEPPSSLETAGPVQS 93
RE +E T PP GP +
Sbjct: 61 QRESLHAEVQKQLQQREQRLEEEETPPAAAAPAPPPLGPGLPETPVCPPEPCPYRGPAKR 120
Query: 94 ------LPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSP 147
P D + ++ V Q+ C++ + +RL +P+ EV+
Sbjct: 121 GRDGGWTPLPQAPDVPWMEIERLVRDVCQSFRQTCQFRLDHLQRL--RPLLFSREEVAG- 177
Query: 148 EVASSTAECHESQRLW-LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFF 206
++ + +W +WQ A +T ++Q VVEFAK +PGF DL Q DQ++L+K G
Sbjct: 178 ---------YQRKTVWEMWQCCAWRLTEAIQSVVEFAKGLPGFMDLCQHDQIVLLKAGCA 228
Query: 207 ELWIGYVSRLTTDSSLTFSD 226
EL + +L FS+
Sbjct: 229 ELVGAIFDFCQSLCALRFSE 248
>gi|185136326|ref|NP_001117107.1| peroxisomal proliferator-activated receptor beta1A [Salmo salar]
gi|20975727|emb|CAC95232.1| peroxisomal proliferator-activated receptor beta1A [Salmo salar]
Length = 443
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 118/253 (46%), Gaps = 44/253 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY RC R C + + +RN+CQYCRF+KCL +GMS D++RYGR+P+
Sbjct: 91 KGFFRRTIRMKLEYERCERS--CKIQKKSRNKCQYCRFQKCLLLGMSHDAIRYGRMPEAE 148
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + + G P++ ++SL V+ A+ N
Sbjct: 149 KRKLVAGL------LAGERAPTTNPNGSDLKSLAKE----------------VNNAYLKN 186
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S P E P V +++ +W+Q TP
Sbjct: 187 LNMTKKKARSILTGKTSSSPVEYPYPFVIHDMDSLCQAENGLVWKQLINGTTPNKEIGVH 246
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +PGF DL +DQ+ L+K G E + L L
Sbjct: 247 VFYRCQCTTVETVRELTEFAKSIPGFVDLFLNDQVTLLKYGVHEAIFAMLPSLMNKDGLL 306
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 307 VANGKGFVTREFL 319
>gi|207029013|ref|NP_001128722.1| retinoic acid receptor, gamma isoform 2 [Rattus norvegicus]
Length = 485
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++V
Sbjct: 138 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAV---------- 187
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
R+D V G PP + E + P EL TK VS+AH
Sbjct: 188 -RNDRNKKKKEVKEEG--PPDNYELS------PQLEELITK----------VSKAHQETF 228
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 229 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 270
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 271 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 326
>gi|216409684|dbj|BAH02279.1| retinoic acid receptor beta [Homo sapiens]
Length = 448
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 114/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD D+ + +AH
Sbjct: 161 ETSKQEC---------------------TESYEMTAELD-------DLTEKIRKAHQE-- 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ + + ++VEF
Sbjct: 191 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELASKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|218156248|dbj|BAH03356.1| retinoic acid receptor alpha [Scyliorhinus torazame]
Length = 364
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 115/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KCL VGMS++SVR R++
Sbjct: 18 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCLEVGMSKESVRND----RNK 73
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
++ D+ P Q S + + T D+I V +AH
Sbjct: 74 KKKDT----------------------PKQECSESYTITPE---TEDLIEKVRKAHQE-- 106
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +++AE + + LW +F+ T + + VEF
Sbjct: 107 ---------------TFPALCQLGKYTTNNSAEQRVTLDIDLWDKFSELSTKCIIKTVEF 151
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AK +PGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ + R Q+
Sbjct: 152 AKHLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQM 206
>gi|234371|gb|AAB19628.1| retinoic acid receptor-beta [Gallus gallus]
Length = 425
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 113/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+
Sbjct: 79 KGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKE 138
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
T ++ + ELD LT + A + S C
Sbjct: 139 PTKQDST----------------------ENYEMTAELDD---LTEKIRKAHQETFPSLC 173
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 174 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 212
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 213 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 267
>gi|432859604|ref|XP_004069176.1| PREDICTED: retinoic acid receptor gamma-A isoform 2 [Oryzias
latipes]
Length = 493
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 112/235 (47%), Gaps = 47/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 106 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKD 165
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + P S E +G ++ L + VS+AH
Sbjct: 166 VKEEITL------------PESYELSGELEEL----------------VNKVSKAHKE-- 195
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+AE L LW +F+ T + ++VEF
Sbjct: 196 ---------------TFPSLCQLGKYTTNSSAEHRVQLDLGLWDKFSELSTKCIIKIVEF 240
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 241 AKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 295
>gi|118344428|ref|NP_001072037.1| nuclear receptor [Ciona intestinalis]
gi|70571031|dbj|BAE06666.1| nuclear receptor [Ciona intestinalis]
Length = 463
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 120/237 (50%), Gaps = 41/237 (17%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS+QK ++Y C R+ +CL+ + R+RCQYCR +KC+ GM R+SVR R
Sbjct: 144 KGFFRRSVQKNMQYTCHRNKQCLINKSTRSRCQYCRLQKCIQAGMLRESVR------NDR 197
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + + G + PS S E++ ++ +V + H
Sbjct: 198 NKKRGKEKEGKSDQNGVDEPS------------CSPEIEA-------LVTSVHKFHVETF 238
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ E L ++ SP + T+ +S LW++FA T + ++VEF
Sbjct: 239 PLSSE-----------LKKYQIPSPPIVKDTSAKTDSN---LWEKFAELSTKCIVKIVEF 284
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQLEV 237
AK VPGF D + DQ+ L+K E L++ SR + + ++TFSDG+ +TR+Q+ V
Sbjct: 285 AKGVPGFQDFTIADQITLLKCACLEVLFLRICSRFSPEHDTMTFSDGLTLTRKQMRV 341
>gi|390334917|ref|XP_785820.2| PREDICTED: nuclear hormone receptor E75-like [Strongylocentrotus
purpuratus]
Length = 357
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 23/209 (11%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ ++YR C + +CL++R+NRNRCQYCR KKCLAVGMS+D+VR GR PK+
Sbjct: 35 KGFFRRSIQHNVKYRVCSKGDECLIMRINRNRCQYCRLKKCLAVGMSKDAVRLGRCPKKC 94
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + PP S G +L S Q+ T +IL++ +A
Sbjct: 95 KPQ----------GLLMPSPPRSPAGDGDTSTLEDS------QMKTEQLILSIHEAQ--- 135
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVE 181
+ T L + +L S+VS + + ++ + + T S+ R++
Sbjct: 136 -KKTLWDWGILQCRSYNL-LSQVSDNNNNNGDSILATRSKI-INNLITNNFTASITRIIS 192
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFELWI 210
FAK VPGF L + DQ+ L+K G E+ +
Sbjct: 193 FAKLVPGFLTLDKSDQITLLKQGSLEILL 221
>gi|384948580|gb|AFI37895.1| retinoic acid receptor alpha isoform 1 [Macaca mulatta]
Length = 462
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 115/237 (48%), Gaps = 50/237 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 109 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 159
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 160 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 199
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 200 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 241
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQLE 236
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 242 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMH 298
>gi|390367123|ref|XP_003731188.1| PREDICTED: nuclear hormone receptor E75-like [Strongylocentrotus
purpuratus]
Length = 301
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 109/203 (53%), Gaps = 30/203 (14%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK++EY+C G C + R+NRNRCQ+CRF+KCLAVGMS++SVR GR KR +
Sbjct: 113 KGFFRRSIQKKMEYKCHFSGNCPIERVNRNRCQHCRFRKCLAVGMSKESVRIGRYSKRVK 172
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVS----QAH 118
+ S+L+ + + P + E + I +S QA
Sbjct: 173 Q-------------------SNLDEIRKLATRPETAEEREARERHEMEIYTMSQTILQAK 213
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSS-----PE--VASSTAECHESQRLWLWQQFAAH 171
+ C Y + + L+ + L SS PE ++ T + ++ +L+ W+ F
Sbjct: 214 EATCLYDNKMIQTLLDRRSELLERLESSGTPVVPESFISDLTEDQKKNSKLFAWKVFLEA 273
Query: 172 VTPSVQRVVEFAKRVPGFCDLSQ 194
++P ++R+VEFAK +PGF + Q
Sbjct: 274 ISPCIRRIVEFAKCLPGFMKIPQ 296
>gi|348525636|ref|XP_003450328.1| PREDICTED: retinoic acid receptor beta-like [Oreochromis niloticus]
Length = 448
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 119/236 (50%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS+QK + Y C RD C++ ++ RNRCQYCR ++C AVGMS++SVR R ++ +
Sbjct: 108 KGFFRRSVQKNMVYTCHRDRNCIINKITRNRCQYCRLQRCFAVGMSKESVRNDRNKRKGK 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + V T E + EL + L ++ + +AH
Sbjct: 168 KEA--------VKMTIME----------------TYELTAELGL---IVEKICRAHRETF 200
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + +VVE
Sbjct: 201 ------------------PSLCQLGKYTTNSSSDHRIQLDLGLWDKFSELATKCIIKVVE 242
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
FAK+VPGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ +TR Q+
Sbjct: 243 FAKQVPGFTGLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLTRTQI 298
>gi|432859602|ref|XP_004069175.1| PREDICTED: retinoic acid receptor gamma-A isoform 1 [Oryzias
latipes]
Length = 485
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 112/235 (47%), Gaps = 47/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 98 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKD 157
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + P S E +G ++ L + VS+AH
Sbjct: 158 VKEEITL------------PESYELSGELEEL----------------VNKVSKAHKE-- 187
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+AE L LW +F+ T + ++VEF
Sbjct: 188 ---------------TFPSLCQLGKYTTNSSAEHRVQLDLGLWDKFSELSTKCIIKIVEF 232
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 233 AKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 287
>gi|200670|gb|AAA40035.1| retinoic acid receptor gamma [Mus musculus]
Length = 458
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 161
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 162 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 201
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 202 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 243
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 244 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 299
>gi|344030235|ref|NP_001230659.1| retinoic acid receptor gamma isoform 4 [Homo sapiens]
gi|332839270|ref|XP_003313718.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Pan troglodytes]
gi|397522011|ref|XP_003831074.1| PREDICTED: retinoic acid receptor gamma isoform 3 [Pan paniscus]
Length = 382
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 39 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 89
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 90 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 129
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 130 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 171
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 172 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 227
>gi|221041602|dbj|BAH12478.1| unnamed protein product [Homo sapiens]
Length = 382
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 39 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 89
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 90 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 129
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 130 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 171
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 172 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 227
>gi|380807331|gb|AFE75541.1| retinoic acid receptor gamma isoform 1, partial [Macaca mulatta]
Length = 382
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 40 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 90
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 91 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 130
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 131 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 172
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 173 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 228
>gi|426372715|ref|XP_004053263.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Gorilla gorilla
gorilla]
Length = 454
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 161
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 162 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 201
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 202 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 243
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 244 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 299
>gi|426372717|ref|XP_004053264.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Gorilla gorilla
gorilla]
Length = 382
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 39 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 89
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 90 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 129
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 130 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 171
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 172 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 227
>gi|410226730|gb|JAA10584.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410300282|gb|JAA28741.1| retinoic acid receptor, gamma [Pan troglodytes]
Length = 454
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 161
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 162 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 201
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 202 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 243
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 244 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 299
>gi|60654205|gb|AAX29795.1| retinoic acid receptor gamma [synthetic construct]
gi|60654353|gb|AAX29867.1| retinoic acid receptor gamma [synthetic construct]
Length = 455
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 161
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 162 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 201
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 202 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 243
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 244 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 299
>gi|296211802|ref|XP_002752564.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Callithrix
jacchus]
Length = 454
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 161
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 162 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 201
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 202 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 243
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 244 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 299
>gi|61363224|gb|AAX42356.1| retinoic acid receptor gamma [synthetic construct]
Length = 454
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 161
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 162 --NDRNKKKKEVKKEGS--PDSYELS------PQLEELITK----------VSKAHQETF 201
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 202 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 243
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 244 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 299
>gi|403296782|ref|XP_003939274.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Saimiri
boliviensis boliviensis]
Length = 454
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 161
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 162 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 201
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 202 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 243
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 244 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 299
>gi|395834998|ref|XP_003790472.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Otolemur
garnettii]
Length = 456
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 161
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 162 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 201
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 202 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 243
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 244 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 299
>gi|4506423|ref|NP_000957.1| retinoic acid receptor gamma isoform 1 [Homo sapiens]
gi|297262495|ref|XP_001087992.2| PREDICTED: retinoic acid receptor gamma isoform 1 [Macaca mulatta]
gi|332839268|ref|XP_509094.3| PREDICTED: retinoic acid receptor gamma isoform 4 [Pan troglodytes]
gi|397522007|ref|XP_003831072.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Pan paniscus]
gi|402886144|ref|XP_003906498.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Papio anubis]
gi|133498|sp|P13631.1|RARG_HUMAN RecName: Full=Retinoic acid receptor gamma; Short=RAR-gamma;
AltName: Full=Nuclear receptor subfamily 1 group B
member 3
gi|190868|gb|AAA63254.1| retinoic acid receptor-gamma [Homo sapiens]
gi|190872|gb|AAA60254.1| retinoic acid receptor-gamma-1 [Homo sapiens]
gi|306887|gb|AAA52692.1| retinoic acid receptor gamma [Homo sapiens]
gi|60820075|gb|AAX36522.1| retinoic acid receptor gamma [synthetic construct]
gi|61363715|gb|AAX42433.1| retinoic acid receptor gamma [synthetic construct]
gi|62739477|gb|AAH93729.1| Retinoic acid receptor, gamma [Homo sapiens]
gi|62739943|gb|AAH93727.1| Retinoic acid receptor, gamma [Homo sapiens]
gi|119617083|gb|EAW96677.1| retinoic acid receptor, gamma, isoform CRA_b [Homo sapiens]
gi|119617084|gb|EAW96678.1| retinoic acid receptor, gamma, isoform CRA_b [Homo sapiens]
gi|158254608|dbj|BAF83277.1| unnamed protein product [Homo sapiens]
gi|216409686|dbj|BAH02280.1| retinoic acid receptor gamma [Homo sapiens]
gi|261858290|dbj|BAI45667.1| retinoic acid receptor, gamma [synthetic construct]
gi|325495467|gb|ADZ17339.1| retinoic acid nuclear receptor gamma variant 1 [Homo sapiens]
gi|355564276|gb|EHH20776.1| Retinoic acid receptor gamma [Macaca mulatta]
gi|355786135|gb|EHH66318.1| Retinoic acid receptor gamma [Macaca fascicularis]
gi|410226724|gb|JAA10581.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410260688|gb|JAA18310.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410300276|gb|JAA28738.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410352705|gb|JAA42956.1| retinoic acid receptor, gamma [Pan troglodytes]
Length = 454
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 161
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 162 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 201
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 202 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 243
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 244 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 299
>gi|226404|prf||1510302C retinoic acid receptor gamma
Length = 458
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 161
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 162 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 201
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 202 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 243
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 244 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 299
>gi|200672|gb|AAA40036.1| retinoic acid receptor gamma [Mus musculus]
Length = 447
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 100 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 150
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 151 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 191 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 232
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 233 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 288
>gi|112181202|ref|NP_035374.3| retinoic acid receptor gamma isoform 1 [Mus musculus]
gi|166899090|sp|P18911.3|RARG_MOUSE RecName: Full=Retinoic acid receptor gamma; Short=RAR-gamma;
AltName: Full=Nuclear receptor subfamily 1 group B
member 3
gi|53909|emb|CAA33845.1| Retinoic acid receptor gamma [Mus musculus]
gi|15277832|gb|AAH12923.1| Retinoic acid receptor, gamma [Mus musculus]
gi|148672049|gb|EDL03996.1| retinoic acid receptor, gamma [Mus musculus]
Length = 458
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 161
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 162 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 201
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 202 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 243
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 244 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 299
>gi|118343970|ref|NP_001071806.1| nuclear receptor [Ciona intestinalis]
gi|70571026|dbj|BAE06665.1| nuclear receptor [Ciona intestinalis]
Length = 638
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 120/237 (50%), Gaps = 41/237 (17%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS+QK ++Y C R+ +CL+ + R+RCQYCR +KC+ GM R+SVR R
Sbjct: 319 KGFFRRSVQKNMQYTCHRNKQCLINKSTRSRCQYCRLQKCIQAGMLRESVR------NDR 372
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + + G + PS S E++ ++ +V + H
Sbjct: 373 NKKRGKEKEGKSDQNGVDEPS------------CSPEIEA-------LVTSVHKFHVETF 413
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ E L ++ SP + T+ +S LW++FA T + ++VEF
Sbjct: 414 PLSSE-----------LKKYQIPSPPIVKDTSAKTDSN---LWEKFAELSTKCIVKIVEF 459
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQLEV 237
AK +PGF D + DQ+ L+K E L++ SR + + ++TFSDG+ +TR+Q+ V
Sbjct: 460 AKGIPGFQDFTIADQITLLKCACLEVLFLRICSRFSPEHDTMTFSDGLTLTRKQMRV 516
>gi|410260692|gb|JAA18312.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410352707|gb|JAA42957.1| retinoic acid receptor, gamma [Pan troglodytes]
Length = 443
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 100 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 150
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 151 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 191 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 232
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 233 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 288
>gi|432866253|ref|XP_004070760.1| PREDICTED: nuclear receptor subfamily 1 group D member 2-like
[Oryzias latipes]
Length = 574
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 83/118 (70%), Gaps = 8/118 (6%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I Y+ C+++ CL++R+NRNRCQ+CRFKKCLAVGMSRD+VR+GR+PKR
Sbjct: 139 KGFFRRSIQQNINYKMCVKNENCLIMRMNRNRCQHCRFKKCLAVGMSRDAVRFGRIPKRE 198
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH 119
++R E S S + ++++ PV+ P+ST+ + + I A+S+A+H
Sbjct: 199 KQRLLDEMQSYLNSLNES---AAMDVESPVRDSPTSTD----DCNSKEAIGAISRAYH 249
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 136 PVSLPP-SEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQ 194
P LPP ++V + + + E +W+ F+ TP+V+ VVEFAK +PGF +LSQ
Sbjct: 367 PWKLPPGAKVLACPLNACPVSGAERTSQEIWESFSQCFTPAVKEVVEFAKGIPGFQELSQ 426
Query: 195 DDQLILIKMGFFELWI 210
DQ++L+K G F++ +
Sbjct: 427 QDQVLLLKSGTFQVLM 442
>gi|112181196|ref|NP_001036192.1| retinoic acid receptor gamma isoform 2 [Mus musculus]
Length = 447
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 100 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 150
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 151 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 191 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 232
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 233 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 288
>gi|221041986|dbj|BAH12670.1| unnamed protein product [Homo sapiens]
Length = 443
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 100 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 150
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 151 --NDRNKKKKEVEEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 191 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 232
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 233 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 288
>gi|112181200|ref|NP_001036193.1| retinoic acid receptor gamma isoform 2 [Homo sapiens]
gi|332839266|ref|XP_003313717.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Pan troglodytes]
gi|397522009|ref|XP_003831073.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Pan paniscus]
gi|403296780|ref|XP_003939273.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Saimiri
boliviensis boliviensis]
gi|119617082|gb|EAW96676.1| retinoic acid receptor, gamma, isoform CRA_a [Homo sapiens]
gi|221045906|dbj|BAH14630.1| unnamed protein product [Homo sapiens]
gi|325495469|gb|ADZ17340.1| retinoic acid nuclear receptor gamma variant 2 [Homo sapiens]
gi|410226728|gb|JAA10583.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410260686|gb|JAA18309.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410300280|gb|JAA28740.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410352701|gb|JAA42954.1| retinoic acid receptor, gamma [Pan troglodytes]
Length = 443
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 100 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 150
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 151 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 191 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 232
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 233 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 288
>gi|296211800|ref|XP_002752563.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Callithrix
jacchus]
Length = 443
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 100 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 150
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 151 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 191 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 232
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 233 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 288
>gi|2133484|pir||I45067 steroid hormone receptor family member CNR3 - Caenorhabditis
elegans
gi|538371|gb|AAA96983.1| steroid hormone receptor family member CHR3 [Caenorhabditis
elegans]
Length = 553
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 121/256 (47%), Gaps = 47/256 (18%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R C+V R+NRNRCQYCR KKC+ +GMSRD+V++GR+ K+ R
Sbjct: 149 KGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRLKKCIELGMSRDAVKFGRMSKKQR 208
Query: 63 ERSDSETGSTR-VSTTGA---------EPPSSLETAGPVQSL----PSSTELDTKQLLTY 108
E+ + E + ++ G PP S + QS+ PS T + + Y
Sbjct: 209 EKVEDEVRMHKELAANGLGYQAIYGDYSPPPSHPSYCFDQSMYGHYPSGT---STPVNGY 265
Query: 109 DVILAVS------QAHHSNCEYTEEGTRRLVRKPV--SLPPSEVSSPEVASSTAECHESQ 160
+ +A + Q + + GT+ + + S P +V +VA+ Q
Sbjct: 266 SIAVAATPTTPMPQNMYGATPSSTNGTQYVAHQATGGSFPSPQVPEEDVATRVIRAFNQQ 325
Query: 161 ----------------------RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQL 198
R W+ FA + P +Q ++EFAK + GF +L Q+ Q+
Sbjct: 326 HSSYTTQHGVCNVDPDCIPHLSRAGGWELFARELNPLIQAIIEFAKSIDGFMNLPQETQI 385
Query: 199 ILIKMGFFELWIGYVS 214
L+K FEL + + +
Sbjct: 386 QLLKGSVFELSLVFAA 401
>gi|74195170|dbj|BAE28323.1| unnamed protein product [Mus musculus]
Length = 458
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 161
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 162 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 201
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 202 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 243
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 244 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 299
>gi|351706161|gb|EHB09080.1| Retinoic acid receptor gamma [Heterocephalus glaber]
Length = 451
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 107 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 157
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 158 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 197
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 198 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 239
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 240 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 295
>gi|71980508|ref|NP_001020976.1| Protein NHR-23, isoform b [Caenorhabditis elegans]
gi|1255257|gb|AAA96057.1| CHR3 [Caenorhabditis elegans]
gi|20338930|emb|CAD30427.1| Protein NHR-23, isoform b [Caenorhabditis elegans]
Length = 553
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 121/256 (47%), Gaps = 47/256 (18%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R C+V R+NRNRCQYCR KKC+ +GMSRD+V++GR+ K+ R
Sbjct: 149 KGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRLKKCIELGMSRDAVKFGRMSKKQR 208
Query: 63 ERSDSETGSTR-VSTTGA---------EPPSSLETAGPVQSL----PSSTELDTKQLLTY 108
E+ + E + ++ G PP S + QS+ PS T + + Y
Sbjct: 209 EKVEDEVRMHKELAANGLGYQAIYGDYSPPPSHPSYCFDQSMYGHYPSGT---STPVNGY 265
Query: 109 DVILAVS------QAHHSNCEYTEEGTRRLVRKPV--SLPPSEVSSPEVASSTAECHESQ 160
+ +A + Q + + GT+ + + S P +V +VA+ Q
Sbjct: 266 SIAVAATPTTPMPQNMYGATPSSTNGTQYVAHQATGGSFPSPQVPEEDVATRVIRAFNQQ 325
Query: 161 ----------------------RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQL 198
R W+ FA + P +Q ++EFAK + GF +L Q+ Q+
Sbjct: 326 HSSYTTQHGVCNVDPDCIPHLSRAGGWELFARELNPLIQAIIEFAKSIDGFMNLPQETQI 385
Query: 199 ILIKMGFFELWIGYVS 214
L+K FEL + + +
Sbjct: 386 QLLKGSVFELSLVFAA 401
>gi|297262493|ref|XP_002798647.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Macaca mulatta]
gi|402886146|ref|XP_003906499.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Papio anubis]
Length = 443
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 100 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 150
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 151 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 191 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 232
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 233 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 288
>gi|395834996|ref|XP_003790471.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Otolemur
garnettii]
Length = 445
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 100 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 150
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 151 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 191 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 232
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 233 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 288
>gi|432865288|ref|XP_004070509.1| PREDICTED: retinoic acid receptor gamma-A isoform 2 [Oryzias
latipes]
Length = 510
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 114/236 (48%), Gaps = 49/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 106 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKD 165
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + P S E +G ++ L + VS+AH
Sbjct: 166 VKEEMVL------------PESYELSGELEEL----------------VNKVSKAHQETF 197
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 198 ------------------PSLCQLGKYTTNSSSDHRVQLDLGLWDKFSELSTKCIIKIVE 239
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 240 FAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 295
>gi|283945526|ref|NP_001164665.1| retinoic acid receptor, alpha [Xenopus (Silurana) tropicalis]
Length = 458
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 115/239 (48%), Gaps = 56/239 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+
Sbjct: 106 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKK- 164
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN- 121
EPP A ++S S E T D+I V +AH
Sbjct: 165 -----------------EPPK----ADVMESYVLSPE-------TEDLIEKVRKAHQETF 196
Query: 122 ---CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
C+ + T + VSL + LW +F+ T + +
Sbjct: 197 PALCQLGKYTTNFSSEERVSL---------------------DIDLWDKFSELSTKCIIK 235
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
VEFAK++PGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ + R Q+
Sbjct: 236 TVEFAKQLPGFTTLTIADQITLLKSACLDILILRICTRYTPDQDTMTFSDGLTLNRTQM 294
>gi|218156206|dbj|BAH03335.1| retinoic acid receptor 3 [Lethenteron camtschaticum]
Length = 519
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 115/239 (48%), Gaps = 56/239 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD KC++ ++ RNRCQYCR ++CL VGMS++SVR
Sbjct: 141 KGFFRRSIQKNMVYTCHRDKKCIINKITRNRCQYCRLQRCLEVGMSKESVR--------N 192
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH--- 119
+RS + R P LE P + D+I V +AH
Sbjct: 193 DRSKKKKEVVR--------PELLEIPPPCPEI-------------EDLIDRVRRAHQETF 231
Query: 120 -SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
S C+ + T S + A+ A LW +F+ T + +
Sbjct: 232 PSLCQLGKYTTSN-------------GSGQRATLDAN--------LWDKFSELSTKCIVK 270
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
VEFAKR+PGF L DDQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 271 TVEFAKRIPGFSTLGIDDQITLLKAACLDILILRICTRYTPEHDTMTFSDGLTLNRTQM 329
>gi|226278|prf||1504304A retinoic acid receptor
Length = 396
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR ++C VGMS++SVR R K+ +
Sbjct: 55 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQRCFEVGMSKESVRNDRN-KKKK 113
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E E ++SL + ELD D+ + +AH
Sbjct: 114 EPIKQEC---------------------IESLEMTAELD-------DLTEKIRKAHQETF 145
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 146 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 187
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+P F L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 188 FAKRLPSFATLTIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 243
>gi|218156250|dbj|BAH03357.1| retinoic acid receptor beta [Scyliorhinus torazame]
Length = 375
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 111/235 (47%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C R+ C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 18 KGFFRRSIQKNMVYTCHREKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 76
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E E + T E D+I + +AH
Sbjct: 77 EMPKQECSESYTMTAELE----------------------------DLIEKICKAHQE-- 106
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 107 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 151
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 152 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRIQM 206
>gi|92911762|gb|ABE96637.1| retinoic acid receptor beta [Xenopus laevis]
Length = 305
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 114/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C R+ C++ ++ RNRCQYCR ++C VGMS++SVR R K+ +
Sbjct: 32 KGFFRRSIQKNMVYTCHREKNCVINKVTRNRCQYCRLQRCFEVGMSKESVRNDR-NKKKK 90
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E ++S + ELD D+ + +AH
Sbjct: 91 EPSKQEC---------------------IESYEMTAELD-------DLTEKIRKAHQE-- 120
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L W +F+ T + ++VEF
Sbjct: 121 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGFWDKFSELATKCIIKIVEF 165
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 166 AKRLPGFTSLTIADQITLLKAACLDILILRICTRFTPEQDTMTFSDGLTLNRTQM 220
>gi|219944617|gb|ACL55050.1| E75 nuclear receptor [Neomysis integer]
Length = 208
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 113/216 (52%), Gaps = 26/216 (12%)
Query: 28 RLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRERSDSETGSTRVSTTGAEPPSSLET 87
R+NRNRCQYCR KKC++VGMS+D+VR+GRVPKR + R + S +
Sbjct: 1 RVNRNRCQYCRLKKCISVGMSKDAVRFGRVPKREKAR----------IIAAMQNHSQVRQ 50
Query: 88 AGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLP-----PS 142
+ S +L+ +Q +T +I +AH + CE+T E ++++ + P P
Sbjct: 51 ENAILS-----DLENEQRVTSSII----RAHMNTCEFTREKVSSMMQQARNRPIYSHCPQ 101
Query: 143 EVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIK 202
+ + A + + + Q F +P+++ VV+FAK +PGF L QDDQ+ L+K
Sbjct: 102 LTLTCPLNPVPAPGNGQGQQEVIQDFNERFSPAIRGVVDFAKNLPGFHLLPQDDQVTLLK 161
Query: 203 MGFFE-LWIGYVSRLTTDSSLTFS-DGMYVTRQQLE 236
G FE L + S + S+ T +GM + R L+
Sbjct: 162 AGVFEVLLVRLASMFDSRSNTTLCLNGMLLKRDALQ 197
>gi|71980506|ref|NP_001020975.1| Protein NHR-23, isoform a [Caenorhabditis elegans]
gi|24418858|sp|P41828.2|NHR23_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-23;
AltName: Full=Steroid hormone receptor family member
chr-3
gi|13274550|gb|AAK17974.1|AF332203_1 nuclear receptor NHR-23 [Caenorhabditis elegans]
gi|6434252|emb|CAA95782.2| Protein NHR-23, isoform a [Caenorhabditis elegans]
Length = 588
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 121/256 (47%), Gaps = 47/256 (18%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R C+V R+NRNRCQYCR KKC+ +GMSRD+V++GR+ K+ R
Sbjct: 184 KGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRLKKCIELGMSRDAVKFGRMSKKQR 243
Query: 63 ERSDSETGSTR-VSTTGA---------EPPSSLETAGPVQSL----PSSTELDTKQLLTY 108
E+ + E + ++ G PP S + QS+ PS T + + Y
Sbjct: 244 EKVEDEVRMHKELAANGLGYQAIYGDYSPPPSHPSYCFDQSMYGHYPSGT---STPVNGY 300
Query: 109 DVILAVS------QAHHSNCEYTEEGTRRLVRKPV--SLPPSEVSSPEVASSTAECHESQ 160
+ +A + Q + + GT+ + + S P +V +VA+ Q
Sbjct: 301 SIAVAATPTTPMPQNMYGATPSSTNGTQYVAHQATGGSFPSPQVPEEDVATRVIRAFNQQ 360
Query: 161 ----------------------RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQL 198
R W+ FA + P +Q ++EFAK + GF +L Q+ Q+
Sbjct: 361 HSSYTTQHGVCNVDPDCIPHLSRAGGWELFARELNPLIQAIIEFAKSIDGFMNLPQETQI 420
Query: 199 ILIKMGFFELWIGYVS 214
L+K FEL + + +
Sbjct: 421 QLLKGSVFELSLVFAA 436
>gi|13274548|gb|AAK17973.1|AF332202_1 nuclear receptor NHR-23 [Caenorhabditis elegans]
Length = 573
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 121/256 (47%), Gaps = 47/256 (18%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R C+V R+NRNRCQYCR KKC+ +GMSRD+V++GR+ K+ R
Sbjct: 169 KGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRLKKCIELGMSRDAVKFGRMSKKQR 228
Query: 63 ERSDSETGSTR-VSTTGA---------EPPSSLETAGPVQSL----PSSTELDTKQLLTY 108
E+ + E + ++ G PP S + QS+ PS T + + Y
Sbjct: 229 EKVEDEVRMHKELAANGLGYQAIYGDYSPPPSHPSYCFDQSMYGHYPSGT---STPVNGY 285
Query: 109 DVILAVS------QAHHSNCEYTEEGTRRLVRKPV--SLPPSEVSSPEVASSTAECHESQ 160
+ +A + Q + + GT+ + + S P +V +VA+ Q
Sbjct: 286 SIAVAATPTTPMPQNMYGATPSSTNGTQYVAHQATGGSFPSPQVPEEDVATRVIRAFNQQ 345
Query: 161 ----------------------RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQL 198
R W+ FA + P +Q ++EFAK + GF +L Q+ Q+
Sbjct: 346 HSSYTTQHGVCNVDPDCIPHLSRAGGWELFARELNPLIQAIIEFAKSIDGFMNLPQETQI 405
Query: 199 ILIKMGFFELWIGYVS 214
L+K FEL + + +
Sbjct: 406 QLLKGSVFELSLVFAA 421
>gi|71980510|ref|NP_001020977.1| Protein NHR-23, isoform c [Caenorhabditis elegans]
gi|58081756|emb|CAI46548.1| Protein NHR-23, isoform c [Caenorhabditis elegans]
Length = 437
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 119/256 (46%), Gaps = 47/256 (18%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R C+V R+NRNRCQYCR KKC+ +GMSRD+V++GR+ K+ R
Sbjct: 33 KGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRLKKCIELGMSRDAVKFGRMSKKQR 92
Query: 63 ERSDSETGSTR-VSTTGA---------EPPSSLETAGPVQSL----PSSTELDTKQLLTY 108
E+ + E + ++ G PP S + QS+ PS T Y
Sbjct: 93 EKVEDEVRMHKELAANGLGYQAIYGDYSPPPSHPSYCFDQSMYGHYPSGTSTPVN---GY 149
Query: 109 DVILAVS------QAHHSNCEYTEEGTRRLVRKPV--SLPPSEVSSPEVASSTAECHESQ 160
+ +A + Q + + GT+ + + S P +V +VA+ Q
Sbjct: 150 SIAVAATPTTPMPQNMYGATPSSTNGTQYVAHQATGGSFPSPQVPEEDVATRVIRAFNQQ 209
Query: 161 ----------------------RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQL 198
R W+ FA + P +Q ++EFAK + GF +L Q+ Q+
Sbjct: 210 HSSYTTQHGVCNVDPDCIPHLSRAGGWELFARELNPLIQAIIEFAKSIDGFMNLPQETQI 269
Query: 199 ILIKMGFFELWIGYVS 214
L+K FEL + + +
Sbjct: 270 QLLKGSVFELSLVFAA 285
>gi|28573924|ref|NP_788303.1| hormone receptor-like in 46, isoform A [Drosophila melanogaster]
gi|386767645|ref|NP_001246236.1| hormone receptor-like in 46, isoform F [Drosophila melanogaster]
gi|195475280|ref|XP_002089912.1| GE21721 [Drosophila yakuba]
gi|399369|sp|P31396.1|HR3_DROME RecName: Full=Probable nuclear hormone receptor HR3; Short=dHR3;
AltName: Full=Nuclear receptor subfamily 1 group F
member 4
gi|157230|gb|AAA28461.1| DHR3 [Drosophila melanogaster]
gi|7303778|gb|AAF58826.1| hormone receptor-like in 46, isoform A [Drosophila melanogaster]
gi|194176013|gb|EDW89624.1| GE21721 [Drosophila yakuba]
gi|373251236|gb|AEY64286.1| FI17818p1 [Drosophila melanogaster]
gi|383302381|gb|AFH07991.1| hormone receptor-like in 46, isoform F [Drosophila melanogaster]
Length = 487
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 132/284 (46%), Gaps = 64/284 (22%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R+ +C+V R+NRNRCQYCR +KCL +GMSRD+V++GR+ K+ R
Sbjct: 72 KGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 131
Query: 63 ERSDSETGSTRV---STTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH 119
E+ + E R + + A P SS+ Q+ SS +L +Y + ++ +
Sbjct: 132 EKVEDEVRFHRAQMRAQSDAAPDSSVYD---TQTPSSSDQLHHNNYNSYSGGYSNNEVGY 188
Query: 120 S-----NCEYTEEGTRR------LVRKPVSLPPSEVSSPEVAS------------STAEC 156
+ T + T + V P S + PE S + AE
Sbjct: 189 GSPYGYSASVTPQQTMQYDISADYVDSTTYEPRSTIIDPEFISHADGDINDVLIKTLAEA 248
Query: 157 HESQRLWLWQQFAAH----VTPSVQRVV--------------------------EFAKRV 186
H + L A H P V R++ EFAK +
Sbjct: 249 HANTNTKLE---AVHDMFRKQPDVSRILYYKNLGQEELWLDCAEKLTQMIQNIIEFAKLI 305
Query: 187 PGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGM 228
PGF LSQDDQ++L+K G FEL I +SRL + +++ + D M
Sbjct: 306 PGFMRLSQDDQILLLKTGSFELAIVRMSRLLDLSQNAVLYGDVM 349
>gi|432865286|ref|XP_004070508.1| PREDICTED: retinoic acid receptor gamma-A isoform 1 [Oryzias
latipes]
Length = 502
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 114/236 (48%), Gaps = 49/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 98 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKD 157
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + P S E +G ++ L + VS+AH
Sbjct: 158 VKEEMVL------------PESYELSGELEEL----------------VNKVSKAHQETF 189
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 190 ------------------PSLCQLGKYTTNSSSDHRVQLDLGLWDKFSELSTKCIIKIVE 231
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 232 FAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 287
>gi|221043444|dbj|BAH13399.1| unnamed protein product [Homo sapiens]
Length = 413
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 116/241 (48%), Gaps = 56/241 (23%)
Query: 2 FQGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
QGFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 147 LQGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR-------- 198
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH-- 119
+D V G+ P S E + P EL TK VS+AH
Sbjct: 199 ---NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQET 237
Query: 120 --SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
S C+ + T +S+A+ L LW +F+ T +
Sbjct: 238 FPSLCQLGKYTT---------------------NSSADHRVQLDLGLWDKFSELATKCII 276
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
++VEFAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 277 KIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 336
Query: 236 E 236
Sbjct: 337 H 337
>gi|118572702|sp|Q91392.2|RARGA_DANRE RecName: Full=Retinoic acid receptor gamma-A; Short=RAR-gamma-A;
Short=zRAR gamma; AltName: Full=Nuclear receptor
subfamily 1 group B member 3-A; AltName:
Full=RAR-gamma-2
gi|68534521|gb|AAH98519.1| Retinoic acid receptor gamma a [Danio rerio]
Length = 499
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 112/236 (47%), Gaps = 49/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R
Sbjct: 98 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR------ 151
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ PP S E +G ++ L + VS+AH
Sbjct: 152 ------NKKKKDVKDEVIPPESYELSGELEEL----------------VNKVSKAHQETF 189
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 190 ------------------PSLCQLGKYTTNSSSDHRIQLDLGLWDKFSELSTKCIIKIVE 231
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 232 FAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 287
>gi|260807357|ref|XP_002598475.1| hypothetical protein BRAFLDRAFT_116859 [Branchiostoma floridae]
gi|21310107|gb|AAM46149.1|AF378827_1 retinoic acid receptor [Branchiostoma floridae]
gi|229283748|gb|EEN54487.1| hypothetical protein BRAFLDRAFT_116859 [Branchiostoma floridae]
Length = 415
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 110/235 (46%), Gaps = 46/235 (19%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK ++Y C RD C++ ++ RNRCQ+CR KKC VGMS++SVR R KR
Sbjct: 100 KGFFRRSIQKNMQYVCHRDKNCVINKVTRNRCQFCRLKKCFDVGMSKESVRNDRNKKRKD 159
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ E + + T P V+ +T D +L Y V A Q
Sbjct: 160 KTQSLEKHTLSYNWT----PEIQTIITTVREAHMATLPDMGKLPKYKVKNAAEQ------ 209
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
R P + LWQ F+ T ++ ++V+F
Sbjct: 210 -----------RGPTDIE-----------------------LWQHFSDLCTETIIKIVQF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWI-GYVSRLTTDS-SLTFSDGMYVTRQQL 235
AK+VPGF DQ+ L+K ++ I +RL +S ++TF +GM ++R Q+
Sbjct: 236 AKKVPGFTTFGTADQITLLKAACLDILILRLATRLDKESDTVTFINGMMLSRTQM 290
>gi|218156244|dbj|BAH03354.1| retinoic acid receptor alpha [Callorhinchus callorynchus]
Length = 307
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 111/235 (47%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR ++CL VGMS++SVR R K+ +
Sbjct: 18 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQRCLEVGMSKESVRNDR-NKKKK 76
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E E + T E D+I V +AH
Sbjct: 77 EVPKQECSESYTITPEIE----------------------------DLIEKVRKAHQE-- 106
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +++AE + + LW +F+ T + + VEF
Sbjct: 107 ---------------TFPALCQLGKYTTNNSAEQRVTLDIDLWDKFSELSTKCIIKTVEF 151
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AK +PGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ + R Q+
Sbjct: 152 AKHLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQM 206
>gi|24308525|ref|NP_571414.1| retinoic acid receptor gamma-A [Danio rerio]
gi|704372|gb|AAB32277.1| retinoic acid receptor gamma [Danio rerio]
Length = 499
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 112/236 (47%), Gaps = 49/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R
Sbjct: 98 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR------ 151
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ PP S E +G ++ L + VS+AH
Sbjct: 152 ------NKKKKDVKDEVIPPESYELSGELEEL----------------VNKVSKAHQETF 189
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 190 ------------------PSLCQLGKYTTNSSSDHRIQLDLGLWDKFSELSTKCIIKIVE 231
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 232 FAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 287
>gi|64131|emb|CAA49565.1| retinoic acid receptor delta 1b [Notophthalmus viridescens]
gi|64135|emb|CAA35603.1| retinoic acid receptor delta [Notophthalmus viridescens]
gi|226521|prf||1516344B retinoic acid receptor delta
Length = 454
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 110/236 (46%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R
Sbjct: 113 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR------ 166
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ V T E P +E +I VS+AH
Sbjct: 167 -NKKKKEIKEEVVTDSYEMPPEMEA----------------------LIQKVSKAHQETF 203
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 204 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWHKFSELATKCIIKIVE 245
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 246 FAKRLPGFATLTIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 301
>gi|86560912|ref|NP_001032971.1| Protein NHR-23, isoform f [Caenorhabditis elegans]
gi|74834668|emb|CAJ30220.1| Protein NHR-23, isoform f [Caenorhabditis elegans]
Length = 555
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 120/258 (46%), Gaps = 49/258 (18%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R C+V R+NRNRCQYCR KKC+ +GMSRD+V++GR+ K+ R
Sbjct: 149 KGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRLKKCIELGMSRDAVKFGRMSKKQR 208
Query: 63 ERSDSETG---STRVSTTGA---------EPPSSLETAGPVQSL----PSSTELDTKQLL 106
E+ + E ++ G PP S + QS+ PS T + +
Sbjct: 209 EKVEDEVQVRMHKELAANGLGYQAIYGDYSPPPSHPSYCFDQSMYGHYPSGT---STPVN 265
Query: 107 TYDVILAVS------QAHHSNCEYTEEGTRRLVRKPV--SLPPSEVSSPEVASSTAECHE 158
Y + +A + Q + + GT+ + + S P +V +VA+
Sbjct: 266 GYSIAVAATPTTPMPQNMYGATPSSTNGTQYVAHQATGGSFPSPQVPEEDVATRVIRAFN 325
Query: 159 SQ----------------------RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDD 196
Q R W+ FA + P +Q ++EFAK + GF +L Q+
Sbjct: 326 QQHSSYTTQHGVCNVDPDCIPHLSRAGGWELFARELNPLIQAIIEFAKSIDGFMNLPQET 385
Query: 197 QLILIKMGFFELWIGYVS 214
Q+ L+K FEL + + +
Sbjct: 386 QIQLLKGSVFELSLVFAA 403
>gi|86560908|ref|NP_001032969.1| Protein NHR-23, isoform d [Caenorhabditis elegans]
gi|74834666|emb|CAJ30218.1| Protein NHR-23, isoform d [Caenorhabditis elegans]
Length = 439
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 118/258 (45%), Gaps = 49/258 (18%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R C+V R+NRNRCQYCR KKC+ +GMSRD+V++GR+ K+ R
Sbjct: 33 KGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRLKKCIELGMSRDAVKFGRMSKKQR 92
Query: 63 ERSDSETG---STRVSTTGA---------EPPSSLETAGPVQSL----PSSTELDTKQLL 106
E+ + E ++ G PP S + QS+ PS T
Sbjct: 93 EKVEDEVQVRMHKELAANGLGYQAIYGDYSPPPSHPSYCFDQSMYGHYPSGTSTPVN--- 149
Query: 107 TYDVILAVS------QAHHSNCEYTEEGTRRLVRKPV--SLPPSEVSSPEVASSTAECHE 158
Y + +A + Q + + GT+ + + S P +V +VA+
Sbjct: 150 GYSIAVAATPTTPMPQNMYGATPSSTNGTQYVAHQATGGSFPSPQVPEEDVATRVIRAFN 209
Query: 159 SQ----------------------RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDD 196
Q R W+ FA + P +Q ++EFAK + GF +L Q+
Sbjct: 210 QQHSSYTTQHGVCNVDPDCIPHLSRAGGWELFARELNPLIQAIIEFAKSIDGFMNLPQET 269
Query: 197 QLILIKMGFFELWIGYVS 214
Q+ L+K FEL + + +
Sbjct: 270 QIQLLKGSVFELSLVFAA 287
>gi|281341825|gb|EFB17409.1| hypothetical protein PANDA_012436 [Ailuropoda melanoleuca]
Length = 449
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKE 170
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + S +S P EL TK VS+AH
Sbjct: 171 VKEEGSLDSYELS-------------------PQLEELITK----------VSKAHQETF 201
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 202 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 243
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 244 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 299
>gi|149714811|ref|XP_001504545.1| PREDICTED: retinoic acid receptor gamma-like isoform 1 [Equus
caballus]
Length = 458
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKE 170
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + S +S P EL TK VS+AH
Sbjct: 171 VKEEGSLDSYELS-------------------PQLEELITK----------VSKAHQETF 201
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 202 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 243
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 244 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 299
>gi|327275485|ref|XP_003222504.1| PREDICTED: retinoic acid receptor alpha-A-like isoform 1 [Anolis
carolinensis]
Length = 461
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 112/240 (46%), Gaps = 56/240 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKK 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN- 121
+ E + + T E D+I V +AH
Sbjct: 168 DAPKQECSESYIITPEVE----------------------------DLIEKVRKAHQETF 199
Query: 122 ---CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
C+ + T + VSL + LW +F+ T + +
Sbjct: 200 PALCQLGKYTTNNSSDQRVSL---------------------DIDLWDKFSELSTKCIIK 238
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
VEFAK++PGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ + R Q+
Sbjct: 239 TVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMH 298
>gi|344030240|ref|NP_001230661.1| retinoic acid receptor gamma isoform 3 [Homo sapiens]
gi|332839272|ref|XP_003313719.1| PREDICTED: retinoic acid receptor gamma isoform 3 [Pan troglodytes]
gi|397522013|ref|XP_003831075.1| PREDICTED: retinoic acid receptor gamma isoform 4 [Pan paniscus]
gi|221041720|dbj|BAH12537.1| unnamed protein product [Homo sapiens]
Length = 432
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 116/239 (48%), Gaps = 56/239 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 89 NGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 139
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH--- 119
+D V G+ P S EL + QL ++I VS+AH
Sbjct: 140 --NDRNKKKKEVKEEGS---------------PDSYEL-SPQL--EELITKVSKAHQETF 179
Query: 120 -SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
S C+ + T +S+A+ L LW +F+ T + +
Sbjct: 180 PSLCQLGKYTT---------------------NSSADHRVQLDLGLWDKFSELATKCIIK 218
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
+VEFAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 219 IVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 277
>gi|345791748|ref|XP_849260.2| PREDICTED: retinoic acid receptor gamma isoform 2 [Canis lupus
familiaris]
Length = 458
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKE 170
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + S +S P EL TK VS+AH
Sbjct: 171 VKEEGSLDSYELS-------------------PQLEELITK----------VSKAHQETF 201
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 202 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 243
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 244 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 299
>gi|338726282|ref|XP_003365289.1| PREDICTED: retinoic acid receptor gamma-like [Equus caballus]
Length = 386
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 39 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKE 98
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + S +S P EL TK VS+AH
Sbjct: 99 VKEEGSLDSYELS-------------------PQLEELITK----------VSKAHQETF 129
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 130 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 171
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 172 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 227
>gi|410964521|ref|XP_003988802.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Felis catus]
Length = 459
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 112 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKE 171
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + S +S P EL TK VS+AH
Sbjct: 172 VKEEGSLDSYELS-------------------PQLEELITK----------VSKAHQETF 202
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 203 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 244
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 245 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 300
>gi|238550133|ref|NP_001154805.1| peroxisome proliferator-activated receptor alpha a [Danio rerio]
Length = 470
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 128/242 (52%), Gaps = 17/242 (7%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R+ C + + NRN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 120 KGFFRRTIRLKLEYDKCERN--CKIQKKNRNKCQYCRFRKCLAVGMSHNAIRFGRIPQSE 177
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLP----SSTELDTKQLLTYDVILAVSQA 117
++R +E + + P A + + + LT
Sbjct: 178 KQRLKAEQDVSGKEEHKCQQPDMRSLARQMHEAYLKHFHMNKAKARVFLTGKTSTPPFVI 237
Query: 118 HHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
H + + + ++LV + + V+S ++ S+ E RL+L+ Q+A+ T V
Sbjct: 238 H--DMDTLQHAEKKLVTQLL----GNVASGDI-STLQEREVEARLFLFCQYASVAT--VT 288
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSDGMYVTRQQLE 236
+ E+AK VPGF DL +DQ+ L+K G +E L+ S + D L G ++TR+ L+
Sbjct: 289 ELTEYAKAVPGFADLDLNDQVTLLKYGVYEALFTLLASCMNKDGLLVAQGGGFITREFLK 348
Query: 237 VM 238
+
Sbjct: 349 SL 350
>gi|8895462|gb|AAF80975.1| retinoic acid receptor gamma 2 [Ambystoma mexicanum]
Length = 441
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 110/236 (46%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R
Sbjct: 100 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR------ 153
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ V T E P +E +I VS+AH
Sbjct: 154 -NKKKKEIKEEVVTDSYEMPPEMEA----------------------LIAKVSKAHQETF 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 191 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 232
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 233 FAKRLPGFATLTIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 288
>gi|301775773|ref|XP_002923322.1| PREDICTED: retinoic acid receptor gamma-like [Ailuropoda
melanoleuca]
Length = 458
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKE 170
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + S +S P EL TK VS+AH
Sbjct: 171 VKEEGSLDSYELS-------------------PQLEELITK----------VSKAHQETF 201
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 202 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 243
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 244 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 299
>gi|195539517|ref|NP_001124228.1| retinoic acid receptor gamma [Bos taurus]
gi|158455128|gb|AAI23810.2| RARG protein [Bos taurus]
gi|296487919|tpg|DAA30032.1| TPA: retinoic acid receptor, gamma [Bos taurus]
Length = 458
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKE 170
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + S +S P EL TK VS+AH
Sbjct: 171 VKEEGSLDSYELS-------------------PQLEELITK----------VSKAHQETF 201
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 202 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 243
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 244 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 299
>gi|449279574|gb|EMC87146.1| Nuclear receptor ROR-beta, partial [Columba livia]
Length = 466
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 135/318 (42%), Gaps = 93/318 (29%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVR--------- 53
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMSRD+V+
Sbjct: 32 KGFFRRSQQNNASYSCSRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 91
Query: 54 ---YGRVPK--RSRERS----DSETGSTRVSTT--------------------------- 77
Y V K +S+E+S D +RV TT
Sbjct: 92 DSLYAEVQKHQQSQEQSGGPKDEPEPLSRVYTTSVSSGLSDLDDISTLSDGLLFDFPLTP 151
Query: 78 -GAEPPSSLETAGPVQSLPSSTELDT------KQLLTYDVILA----------------- 113
G+ +L+ Q P + LD KQ Y+++L
Sbjct: 152 DGSSTYYNLDLLTSAQPSPDQSSLDVADATLIKQESIYELMLEPALLVHGALESGQLPAD 211
Query: 114 ------------VSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQR 161
V ++H C+YT E +RL S P EV + + S A
Sbjct: 212 ISVLEIDRVAQNVVKSHLETCQYTTEELKRLAWSLYS--PEEVRALQSKSCEA------- 262
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDS 220
+WQQ + ++ ++Q VVEFAKR+ GF +L Q+DQ+IL+K G E L + V +
Sbjct: 263 --MWQQCSLQISNAIQYVVEFAKRIDGFMELCQNDQIILLKAGCLEVLLLRMVRAFNPLN 320
Query: 221 SLTFSDGMYVTRQQLEVM 238
S DG + + Q + +
Sbjct: 321 STVLFDGKFGSVQMFKSL 338
>gi|1173170|sp|P18516.2|RARG_NOTVI RecName: Full=Retinoic acid receptor gamma; Short=RAR-gamma;
AltName: Full=Nuclear receptor subfamily 1 group B
member 3; AltName: Full=Retinoic acid receptor delta;
Short=RAR-delta
gi|64130|emb|CAA49564.1| retinoic acid receptor delta 1a [Notophthalmus viridescens]
Length = 505
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 110/236 (46%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R
Sbjct: 164 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR------ 217
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ V T E P +E +I VS+AH
Sbjct: 218 -NKKKKEIKEEVVTDSYEMPPEMEA----------------------LIQKVSKAHQETF 254
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 255 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWHKFSELATKCIIKIVE 296
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 297 FAKRLPGFATLTIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 352
>gi|16580813|dbj|BAB71757.1| retinoic acid receptor unknown type [Paralichthys olivaceus]
Length = 285
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 114/236 (48%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C R+ C++ ++ RNRCQYCR +KC AVGMS++SVR R
Sbjct: 16 KGFFRRSIQKNMVYTCHREKNCIINKVTRNRCQYCRLQKCFAVGMSKESVRNDR------ 69
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + P L S EL T +L + +I + +AH
Sbjct: 70 --------------------NKKKKESPKPELAESYEL-TAELES--IIEKIRKAHQE-- 104
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 105 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 149
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AKRVPGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ + R Q+
Sbjct: 150 AKRVPGFTGLTIADQITLLKAACLDILILRICTRYTPDKDTMTFSDGLTLNRTQMH 205
>gi|302315681|gb|ADL14558.1| retinoic acid receptor gamma [Ailuropoda melanoleuca]
Length = 208
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 113/236 (47%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R
Sbjct: 12 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR------ 65
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ ++ G + S S +L+ ++I VS+AH
Sbjct: 66 ----------------NKKKKEVKEEGSLDSYELSPQLE-------ELITKVSKAHQE-- 100
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 101 ---------------TFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEF 145
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQLE 236
AKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 146 AKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMH 201
>gi|327275487|ref|XP_003222505.1| PREDICTED: retinoic acid receptor alpha-A-like isoform 2 [Anolis
carolinensis]
Length = 458
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 112/240 (46%), Gaps = 56/240 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 106 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 164
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN- 121
+ E + + T E D+I V +AH
Sbjct: 165 DAPKQECSESYIITPEVE----------------------------DLIEKVRKAHQETF 196
Query: 122 ---CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
C+ + T + VSL + LW +F+ T + +
Sbjct: 197 PALCQLGKYTTNNSSDQRVSL---------------------DIDLWDKFSELSTKCIIK 235
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
VEFAK++PGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ + R Q+
Sbjct: 236 TVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMH 295
>gi|6433866|emb|CAB60726.1| retinoic acid receptor [Homo sapiens]
Length = 381
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 114/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS QK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 38 KGFFRRSTQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 88
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 89 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 128
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 129 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 170
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 171 FAKRLPGFAGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 226
>gi|432112583|gb|ELK35299.1| Retinoic acid receptor gamma [Myotis davidii]
Length = 447
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 100 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKE 159
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + S +S P EL TK VS+AH
Sbjct: 160 VKEEGSLDSYELS-------------------PQLEELITK----------VSKAHQETF 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 191 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 232
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 233 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 288
>gi|218156202|dbj|BAH03333.1| retinoic acid receptor 1 [Lethenteron camtschaticum]
Length = 497
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 111/236 (47%), Gaps = 42/236 (17%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS+QK + Y C RD C++ + RNRCQYCR +KC VGMS+++VR R KR
Sbjct: 111 KGFFRRSVQKNMVYTCHRDKNCVINKNTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKRK- 169
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ-AHHSN 121
E P + + P EL +Q D I Q S
Sbjct: 170 -----------------EAPVVVAAVRSPEVPPERYELSCEQEQLVDKIRKSHQETFPSL 212
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVE 181
C+ + T +S A+ L LW +F+ T + ++VE
Sbjct: 213 CQLGKYTT---------------------NSCADHRVQLDLGLWDKFSELSTKCIVKIVE 251
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K E+ I + SR T + ++TFSDG+ + R Q+
Sbjct: 252 FAKRLPGFPSLTIADQITLLKAACLEILILRICSRYTPEQDTMTFSDGLTLNRTQM 307
>gi|1843450|emb|CAA49562.1| largest of the predicted retinoic acid receptor delta 1 isoforms
empolying a CUG initiation site [Notophthalmus
viridescens]
Length = 629
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 110/236 (46%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R
Sbjct: 288 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR------ 341
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ V T E P +E +I VS+AH
Sbjct: 342 -NKKKKEIKEEVVTDSYEMPPEMEA----------------------LIQKVSKAHQETF 378
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 379 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWHKFSELATKCIIKIVE 420
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 421 FAKRLPGFATLTIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 476
>gi|345791750|ref|XP_858281.2| PREDICTED: retinoic acid receptor gamma isoform 4 [Canis lupus
familiaris]
Length = 447
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 100 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKE 159
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + S +S P EL TK VS+AH
Sbjct: 160 VKEEGSLDSYELS-------------------PQLEELITK----------VSKAHQETF 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 191 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 232
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 233 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 288
>gi|149714814|ref|XP_001504548.1| PREDICTED: retinoic acid receptor gamma-like isoform 2 [Equus
caballus]
Length = 447
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 100 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKE 159
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + S +S P EL TK VS+AH
Sbjct: 160 VKEEGSLDSYELS-------------------PQLEELITK----------VSKAHQETF 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 191 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 232
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 233 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 288
>gi|426224398|ref|XP_004006358.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor gamma [Ovis
aries]
Length = 458
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKE 170
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + S +S P EL TK VS+AH
Sbjct: 171 VKEEGSLDSYELS-------------------PQLEELITK----------VSKAHQEXF 201
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 202 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 243
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 244 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 299
>gi|410964523|ref|XP_003988803.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Felis catus]
Length = 447
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 100 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKE 159
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + S +S P EL TK VS+AH
Sbjct: 160 VKEEGSLDSYELS-------------------PQLEELITK----------VSKAHQETF 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 191 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 232
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 233 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 288
>gi|213623600|gb|AAI69954.1| Retinoic acid receptor alpha [Xenopus laevis]
gi|213625161|gb|AAI69958.1| Retinoic acid receptor alpha [Xenopus laevis]
Length = 448
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 114/240 (47%), Gaps = 56/240 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+
Sbjct: 98 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKK- 156
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN- 121
EPP ++S S E T D+I V +AH
Sbjct: 157 -----------------EPPK----VDVMESYVLSPE-------TQDLIEKVRKAHKETF 188
Query: 122 ---CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
C+ + T + VSL + LW +F+ T + +
Sbjct: 189 PALCQLGKYTTNFSSEERVSL---------------------DIDLWDKFSELSTKCIIK 227
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
VEFAK++PGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ + R Q+
Sbjct: 228 TVEFAKQLPGFTTLTIADQITLLKSACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMH 287
>gi|350583983|ref|XP_001924421.3| PREDICTED: retinoic acid receptor gamma [Sus scrofa]
Length = 447
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 100 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKE 159
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + S +S P EL TK VS+AH
Sbjct: 160 VKEEGSLDSYELS-------------------PQLEELITK----------VSKAHQETF 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 191 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 232
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 233 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 288
>gi|417411923|gb|JAA52380.1| Putative retinoic acid receptor gamma-like isoform 1, partial
[Desmodus rotundus]
Length = 609
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 115/239 (48%), Gaps = 56/239 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 262 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKE 321
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH--- 119
+ + S +S P EL TK VS+AH
Sbjct: 322 VKEEGSLDSYELS-------------------PQLEELITK----------VSKAHQETF 352
Query: 120 -SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
S C+ + T +S+A+ L LW +F+ T + +
Sbjct: 353 PSLCQLGKYTT---------------------NSSADHRVQLDLGLWDKFSELATKCIIK 391
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
+VEFAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 392 IVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 450
>gi|18031837|gb|AAL02362.1| retinoic acid receptor gamma-2 [Mesocricetus auratus]
Length = 443
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 100 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKE 159
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + S +S P EL TK VS+AH
Sbjct: 160 VKEECSPDSYELS-------------------PQLEELITK----------VSKAHQETF 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 191 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 232
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 233 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 288
>gi|301618956|ref|XP_002938868.1| PREDICTED: nuclear receptor ROR-beta-like [Xenopus (Silurana)
tropicalis]
Length = 450
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 129/287 (44%), Gaps = 77/287 (26%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R C++ R NRNRCQ+CR +KCL +GMSRD+V++GR+ K+ R
Sbjct: 31 KGFFRRSQQNNANYSCSRQRNCMIDRTNRNRCQHCRLQKCLELGMSRDAVKFGRMSKKQR 90
Query: 63 E------------------RSDSETGSTRVSTTGAEPPSSLETAGPVQS----------- 93
+ R +T S ST + S LE +
Sbjct: 91 DSLYAEVQKHQQNQEQVLARDTKDTVSRSYSTGTSSCLSDLEELSGLSDGLLFDFPLTPD 150
Query: 94 ---------LPSSTE----------------------LDTKQLLTYD------VILAVSQ 116
LP STE ++ + LL + V + +
Sbjct: 151 GCSSYYSLELPLSTEPSPDPSHGTTLDELPVHYSLGLIEDQTLLDLNGTEIEYVSQNIIR 210
Query: 117 AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
+H C++T + ++V + S EV S ++ E +WQ A HV+ ++
Sbjct: 211 SHLGTCQFTSDELSKMVW-------NAHSQEEVCSLQSKPCE----MMWQLCAIHVSNAI 259
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
Q VVEFAKR+ GF +L Q+DQ++L+K G E+ + ++R S+ T
Sbjct: 260 QYVVEFAKRLDGFMELCQNDQIVLLKAGCLEVLLIRMTRAFNPSNNT 306
>gi|158702341|gb|ABW77530.1| retinoic acid receptor gamma b [Salmo salar]
Length = 437
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 112/236 (47%), Gaps = 49/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R
Sbjct: 50 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR------ 103
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ P S E +G ++ L + VS+AH
Sbjct: 104 ------NKKKKDVKEEVVLPESYELSGELEEL----------------VNKVSKAHKDTF 141
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS V + ++++ H Q L LW +F+ T + ++VE
Sbjct: 142 ------------------PSLVQLGKYTTNSSADHRVQLDLGLWDKFSELSTKCIIKIVE 183
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 184 FAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 239
>gi|355715379|gb|AES05308.1| retinoic acid receptor, beta [Mustela putorius furo]
Length = 333
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 115/239 (48%), Gaps = 51/239 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-- 159
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ PS E A +S + ELD D+ + +AH
Sbjct: 160 -----------------KEPSKQECA---ESYEMTAELD-------DLTEKIRKAHQE-- 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 191 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVP---GFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AKR+P GF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 294
>gi|148229864|ref|NP_001083723.1| retinoic acid receptor, alpha [Xenopus laevis]
gi|836655|emb|CAA60791.1| retinoic acid receptor [Xenopus laevis]
Length = 448
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 114/240 (47%), Gaps = 56/240 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+
Sbjct: 98 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKK- 156
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN- 121
EPP ++S S E T D+I V +AH
Sbjct: 157 -----------------EPPK----VDVMESYVLSPE-------TQDLIEKVRKAHKETF 188
Query: 122 ---CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
C+ + T + VSL + LW +F+ T + +
Sbjct: 189 PALCQLGKYTTNFSSEERVSL---------------------DIDLWDKFSELSTKCIIK 227
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
VEFAK++PGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ + R Q+
Sbjct: 228 TVEFAKQLPGFTTLTIADQITLLKSACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMH 287
>gi|440900685|gb|ELR51764.1| Retinoic acid receptor gamma, partial [Bos grunniens mutus]
Length = 577
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 230 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKE 289
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + S +S P EL TK VS+AH
Sbjct: 290 VKEEGSLDSYELS-------------------PQLEELITK----------VSKAHQETF 320
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 321 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 362
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 363 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 418
>gi|308387356|ref|NP_001184136.1| peroxisome proliferator-activated receptor beta [Oncorhynchus
mykiss]
gi|307751336|gb|ADN92685.1| peroxisome proliferator-activated receptor beta [Oncorhynchus
mykiss]
Length = 443
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 119/253 (47%), Gaps = 44/253 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ +++Y RC R C + + +RN+CQYCRF+KCL +GMS D++RYGR+P+
Sbjct: 91 KGFFRRTIRMKLDYERCERS--CKIQKKSRNKCQYCRFQKCLLLGMSHDAIRYGRMPEAE 148
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + + G + P++ + ++SL V+ A+ N
Sbjct: 149 KRKLVAGL------LAGEKAPTTNPNSSDLKSLAKR----------------VNNAYLKN 186
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S P P V +++ +W+Q TP
Sbjct: 187 LNMTKKKARSILTGKTSSSPVAYPYPFVIHDMDSLCQAENGLVWKQLINGTTPNKEIGVH 246
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +PGF DL +DQ+ L+K G E + L L
Sbjct: 247 VFYRCQCTTVETVRELTEFAKSIPGFVDLFLNDQVTLLKYGVHEAIFAMLPSLMNKDGLL 306
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 307 VANGKGFVTREFL 319
>gi|431921630|gb|ELK18982.1| Retinoic acid receptor gamma, partial [Pteropus alecto]
Length = 534
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 187 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKE 246
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + S +S P EL TK VS+AH
Sbjct: 247 VKEEGLLDSYELS-------------------PQLEELITK----------VSKAHQETF 277
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 278 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 319
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 320 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 375
>gi|225858|prf||1401244A thyroid/steroid receptor related gene
Length = 448
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 112/235 (47%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK Y C RD C++ ++ RNRCQYCR +KC VG S++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNHIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGHSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD D+ + +AH
Sbjct: 161 ETSKQEC---------------------TESYEMTAELD-------DLTEKIRKAHQE-- 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 191 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|327283540|ref|XP_003226499.1| PREDICTED: retinoic acid receptor beta-like [Anolis carolinensis]
Length = 449
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 116/235 (49%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E E +++ + ELD LT + + + S C
Sbjct: 161 EPLKQEF---------------------MENYEMTAELDD---LTEKIRKSHQETFPSLC 196
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 197 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|189442267|gb|AAI67563.1| Rara2a protein [Xenopus laevis]
Length = 457
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 114/240 (47%), Gaps = 56/240 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+
Sbjct: 107 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKK- 165
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN- 121
EPP ++S S E T D+I V +AH
Sbjct: 166 -----------------EPPK----VDVMESYVLSPE-------TQDLIEKVRKAHKETF 197
Query: 122 ---CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
C+ + T + VSL + LW +F+ T + +
Sbjct: 198 PALCQLGKYTTNFSSEERVSL---------------------DIDLWDKFSELSTKCIIK 236
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
VEFAK++PGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ + R Q+
Sbjct: 237 TVEFAKQLPGFTTLTIADQITLLKSACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMH 296
>gi|309244406|gb|ADO52203.1| NUP98/RARG fusion protein, partial [Homo sapiens]
Length = 290
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 113/233 (48%), Gaps = 50/233 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 104 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 154
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 155 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 194
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 195 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 236
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTR 232
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R
Sbjct: 237 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNR 289
>gi|432874724|ref|XP_004072561.1| PREDICTED: nuclear receptor ROR-beta-like [Oryzias latipes]
Length = 472
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 123/284 (43%), Gaps = 76/284 (26%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPK--- 59
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMSRD+V++GR+ K
Sbjct: 31 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 90
Query: 60 ------------RSRERSDSETGSTRV-----STTGAEPPSSLE-------TAGPVQSLP 95
R +E+ +TG ST+ S+L G V LP
Sbjct: 91 DSLYAEVQKHQARLQEQRQQQTGEAEALARVYSTSLTNGLSTLNHEIGGTYANGHVIDLP 150
Query: 96 SSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPV------------------ 137
+ + + +Q G + + ++PV
Sbjct: 151 KGGHSNGGGIPGGYYGIDSTQPSPDQSGLDMSGMKHIKQEPVYDLTPVPNLFSYGGYQES 210
Query: 138 SLPPSEVSSPE---VASSTAECH---------ESQRL-W------------------LWQ 166
L P+ VS E +A + + H E Q+L W LWQ
Sbjct: 211 HLGPNNVSMGELDRIAQNIIKSHLETCQYTTEELQQLAWQTHSYEEIKMYQSKPRDVLWQ 270
Query: 167 QFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
Q A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ +
Sbjct: 271 QCAIQITHAIQYVVEFAKRISGFMELCQNDQILLLKSGCLEVVL 314
>gi|133922573|ref|NP_001076779.1| retinoic acid receptor gamma-B [Danio rerio]
gi|156633604|sp|A2T928.1|RARGB_DANRE RecName: Full=Retinoic acid receptor gamma-B; Short=RAR-gamma-B;
AltName: Full=Nuclear receptor subfamily 1 group B
member 3-B
gi|124054088|gb|ABM89228.1| retinoic acid receptor gamma b [Danio rerio]
Length = 489
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 49/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R
Sbjct: 86 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLRKCFEVGMSKEAVRNDR------ 139
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ P S E +G ++ L + VS+AH
Sbjct: 140 ------NKKKKDVKEEVVLPESYELSGELEEL----------------VNKVSKAHRETF 177
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 178 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELSTKCIIKIVE 219
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 220 FAKRLPGFTSLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 275
>gi|348522526|ref|XP_003448775.1| PREDICTED: thyroid hormone receptor alpha-like [Oreochromis
niloticus]
Length = 422
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 130/249 (52%), Gaps = 40/249 (16%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 77 KGFFRRTIQKNLHPTYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 136
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +QS P T + +++I
Sbjct: 137 KRRLIEENRERRKKE-----------------EMVKSLQSRPEPTGAE------WELIRL 173
Query: 114 VSQAH-HSNCEYTEEGTRR---LVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFA 169
V++AH H+N + ++ +R LV + P ++ VA ++ + L + +F
Sbjct: 174 VTEAHRHTNAQGSQWKQKRKFLLVVEVRLKEPEKIGQSPVAPTSD--GDKVDLEAFSEFT 231
Query: 170 AHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDG 227
+TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R DS +LT S
Sbjct: 232 KIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAMRYDPDSETLTLSGE 291
Query: 228 MYVTRQQLE 236
M V R+QL+
Sbjct: 292 MAVKREQLK 300
>gi|348521578|ref|XP_003448303.1| PREDICTED: retinoic acid receptor gamma-A-like [Oreochromis
niloticus]
Length = 495
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 49/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R
Sbjct: 106 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR------ 159
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ P S E +G ++ L + VS+AH
Sbjct: 160 ------NKKKKDVKEEVVLPESYELSGELEEL----------------VNKVSKAHQETF 197
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 198 ------------------PSLCQLGKYTTNSSSDHRVQLDLGLWDKFSELSTKCIIKIVE 239
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 240 FAKRLPGFTSLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 295
>gi|218156232|dbj|BAH03348.1| retinoic acid receptor 1 [Mordacia mordax]
Length = 305
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 109/237 (45%), Gaps = 45/237 (18%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ + RNRCQYCR +KC VGMS+++VR R KR
Sbjct: 18 KGFFRRSIQKNMVYTCHRDKNCIINKNTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKRK- 76
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
V E P P EL +Q D I Q
Sbjct: 77 --------EVVVVARSPEVP------------PERYELSCEQEQLVDKIRKSHQETF--- 113
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + +++ H Q L LW +F+ T + ++VE
Sbjct: 114 ------------------PSLCQLGKYTTNSCADHRVQLDLGLWDKFSELSTKCIVKIVE 155
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
FAKR+PGF L+ DQ+ L+K E+ I + +R T + ++TFSDG+ + R Q+
Sbjct: 156 FAKRLPGFPSLTIADQITLLKAACLEILILRICTRHTPEQDTMTFSDGLTLNRTQMH 212
>gi|215028|gb|AAB59953.1| retinoic acid receptor gamma-2, partial [Danio rerio]
Length = 367
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 111/237 (46%), Gaps = 49/237 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R
Sbjct: 98 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR------ 151
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ PP S E +G ++ L + VS+AH
Sbjct: 152 ------NKKKKDVKDEVIPPESYELSGELEEL----------------VNKVSKAHQETF 189
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 190 ------------------PSLCQLGKYTTNSSSDHRIQLDLGLWDKFSELSTKCIIKIVE 231
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQLE 236
FAK +PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 232 FAKALPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMH 288
>gi|195591221|ref|XP_002085341.1| GD12358 [Drosophila simulans]
gi|194197350|gb|EDX10926.1| GD12358 [Drosophila simulans]
Length = 433
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 82/126 (65%), Gaps = 19/126 (15%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 266 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 325
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R A S + G ++L +TELD + L + AV +AH
Sbjct: 326 KAR------------ILAAMQQSTQNRGQQRAL--ATELDDQPRL----LAAVLRAHLET 367
Query: 122 CEYTEE 127
CE+T+E
Sbjct: 368 CEFTKE 373
>gi|68132002|gb|AAY85267.1| PPARalpha-A, partial [Danio rerio]
Length = 473
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 127/242 (52%), Gaps = 17/242 (7%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R+ C + + NRN+CQYCRF +CLAVGMS +++R+GR+P+
Sbjct: 123 KGFFRRTIRLKLEYDKCERN--CKIQKKNRNKCQYCRFPQCLAVGMSHNAIRFGRIPQSE 180
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLP----SSTELDTKQLLTYDVILAVSQA 117
++R +E + + P A + + + LT
Sbjct: 181 KQRLKAEQDVSGKEEHKCQQPDMRSLARQMHEAYLKHFHMNKAKARVFLTGKTSTPPFVI 240
Query: 118 HHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
H + + + ++LV + + V+S ++ S+ E RL+L+ Q+A+ T V
Sbjct: 241 H--DMDTLQHAEKKLVTQLL----GNVASGDI-STLQEREVEARLFLFCQYASVAT--VT 291
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSDGMYVTRQQLE 236
+ E+AK VPGF DL +DQ+ L+K G +E L+ S + D L G ++TR+ L+
Sbjct: 292 ELTEYAKAVPGFADLDLNDQVTLLKYGVYEALFTLLASCMNKDGLLVAQGGGFITREFLK 351
Query: 237 VM 238
+
Sbjct: 352 SL 353
>gi|348507671|ref|XP_003441379.1| PREDICTED: retinoic acid receptor gamma-A-like [Oreochromis
niloticus]
Length = 494
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 111/236 (47%), Gaps = 49/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R
Sbjct: 106 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR------ 159
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ P + E +G ++ L + VS+AH
Sbjct: 160 ------NKKKKDVKEEVVLPENYELSGELEEL----------------VNKVSKAHQETF 197
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 198 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELSTKCIIKIVE 239
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 240 FAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 295
>gi|94482822|gb|ABF22438.1| retinoic acid receptor gamma [Takifugu rubripes]
Length = 500
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 49/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R
Sbjct: 98 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR------ 151
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ P S E +G ++ L + VS+AH
Sbjct: 152 ------NKKKKDVKEEVVLPESYELSGELEEL----------------VNKVSKAHQETF 189
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 190 ------------------PSLGQLGKYTTNSSSDHRVQLDLGLWDKFSELSTKCIIKIVE 231
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 232 FAKRLPGFTSLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 287
>gi|47229543|emb|CAG06739.1| unnamed protein product [Tetraodon nigroviridis]
Length = 720
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 58/63 (92%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
QGFFRRSIQ+ I Y+ C+++ KCL++R+NRNRCQ+CRFKKCLAVGMSRD+VR+GR+PKR
Sbjct: 262 QGFFRRSIQQNIHYKMCVKNEKCLIMRMNRNRCQHCRFKKCLAVGMSRDAVRFGRIPKRE 321
Query: 62 RER 64
++R
Sbjct: 322 KQR 324
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 14/123 (11%)
Query: 118 HHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
+ S C + G +++ P++ P VA ++ E +W F+ TP+V+
Sbjct: 481 NQSPCPWKLNGGAKVLACPLNACP-------VAPASRSSQE-----VWDSFSQCFTPAVR 528
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQL 235
VVEFAK +PGF LSQ DQ++L+K G F++ + L + ++TF +G + L
Sbjct: 529 EVVEFAKSIPGFQSLSQHDQVMLLKSGTFQVLMVRFCSLFDAKERAVTFLNGQTYSLASL 588
Query: 236 EVM 238
+
Sbjct: 589 RAL 591
>gi|16580807|dbj|BAB71754.1| retinoic acid receptor gamma [Paralichthys olivaceus]
Length = 286
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 111/237 (46%), Gaps = 49/237 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R
Sbjct: 16 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR------ 69
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ P S E +G ++ L + VS+AH
Sbjct: 70 ------NKKKKDVKEEVVLPESYELSGELEEL----------------VNKVSKAHQETF 107
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 108 ------------------PSLGQLGKYTTNSSSDHRVQLDLGLWDKFSELSTKCIIKIVE 149
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQLE 236
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 150 FAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMH 206
>gi|395532564|ref|XP_003768340.1| PREDICTED: retinoic acid receptor alpha-A-like [Sarcophilus
harrisii]
Length = 437
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 112/239 (46%), Gaps = 56/239 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 106 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKK 164
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN- 121
E +E + T E ++I V +AH
Sbjct: 165 ETPKAECSESYTLTPEVE----------------------------ELIEKVRKAHQETF 196
Query: 122 ---CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
C+ + T + VSL + LW +F+ T + +
Sbjct: 197 PALCQLGKYTTNNSSEQRVSL---------------------DIDLWDKFSELSTKCIIK 235
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
VEFAK++PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 TVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 294
>gi|410919461|ref|XP_003973203.1| PREDICTED: nuclear receptor subfamily 1 group D member 2-like
[Takifugu rubripes]
Length = 562
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 74/103 (71%), Gaps = 3/103 (2%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I Y+ C+++ KCL++R+NRNRCQ+CRFKKCLAVGMSRD+VR+GR+PKR
Sbjct: 140 KGFFRRSIQQNIHYKMCVKNEKCLIMRMNRNRCQHCRFKKCLAVGMSRDAVRFGRIPKRE 199
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQ 104
++R E S +++ P +E + P + P S E T +
Sbjct: 200 KQRLLDEMQS-YMNSLNESAPVDMEMSPPSDA-PCSPETLTNE 240
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W F+ TP+V+ VVEFAK +PGF LSQ DQ++L+K G F++ + L + +
Sbjct: 384 VWDSFSQCFTPAVREVVEFAKSIPGFQSLSQHDQVMLLKSGTFQVLMVRFCSLFDAKERA 443
Query: 222 LTFSDG 227
+TF +G
Sbjct: 444 VTFLNG 449
>gi|47228660|emb|CAG07392.1| unnamed protein product [Tetraodon nigroviridis]
Length = 456
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 49/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R
Sbjct: 50 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR------ 103
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ P S E +G ++ L + VS+AH
Sbjct: 104 ------NKKKKDVKEEVVLPESYELSGELEEL----------------VNKVSKAHQETF 141
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 142 ------------------PSLGQLGKYTTNSSSDHRVQLDLGLWDKFSELSTKCIIKIVE 183
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 184 FAKRLPGFTSLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 239
>gi|126341437|ref|XP_001369887.1| PREDICTED: retinoic acid receptor beta isoform 1 [Monodelphis
domestica]
Length = 448
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 115/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR + K+
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDKNKKKKE 161
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
PS E +S + ELD LT + A + S C
Sbjct: 162 -------------------PSKQEF---TESYEMTAELDD---LTEKIRKAHQETFPSLC 196
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 197 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|218156242|dbj|BAH03353.1| retinoic acid receptor gamma [Lepisosteus platyrhincus]
Length = 414
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 113/236 (47%), Gaps = 49/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R
Sbjct: 18 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR------ 71
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ P S E S+EL+ +++ VS+AH
Sbjct: 72 ------NKKKKDVKEEVVVPESYEL---------SSELE-------ELVSKVSKAHQETF 109
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 110 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELSTKCIIKIVE 151
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 152 FAKRLPGFTTLTIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 207
>gi|198282037|ref|NP_571543.1| peroxisome proliferator-activated receptor delta b [Danio rerio]
gi|190336714|gb|AAI62172.1| Peroxisome proliferator-activated receptor delta b [Danio rerio]
gi|190336716|gb|AAI62174.1| Peroxisome proliferator-activated receptor delta b [Danio rerio]
Length = 517
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 119/252 (47%), Gaps = 50/252 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY RC R C V + +RN+CQYCRF+KCLA+GMS D++RYGR+P+
Sbjct: 173 KGFFRRTIRMKLEYERCER--ACKVQKKSRNKCQYCRFQKCLALGMSHDAIRYGRMPEAE 230
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+++ E P S S+ D K L + V+ A+ N
Sbjct: 231 KKK-------LVAGLLAGENPQS------------SSGADLKTLAKH-----VNTAYLRN 266
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF---------AAHV 172
T++ R ++ S ++P V +++ +W Q HV
Sbjct: 267 LNMTKKKARSILTGKTS-----CTAPFVIHDMDSLWQAENGLVWNQLNGAPLNKEIGVHV 321
Query: 173 --------TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTF 224
+V+ + EFAK +PGF DL +DQ+ L+K G E + L L
Sbjct: 322 FYRCQCTTVETVRELTEFAKNIPGFVDLFLNDQVTLLKYGVHEAIFAMLPSLMNKDGLLV 381
Query: 225 SDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 382 ANGKGFVTREFL 393
>gi|395540271|ref|XP_003772080.1| PREDICTED: retinoic acid receptor beta [Sarcophilus harrisii]
Length = 448
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 115/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR + K+
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDKNKKKKE 161
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
PS E +S + ELD LT + A + S C
Sbjct: 162 -------------------PSKQEF---TESYEMTAELDD---LTEKIRKAHQETFPSLC 196
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 197 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|45383107|ref|NP_989867.1| retinoic acid receptor alpha [Gallus gallus]
gi|17367590|sp|Q90966.1|RARA_CHICK RecName: Full=Retinoic acid receptor alpha; Short=RAR-alpha;
AltName: Full=Nuclear receptor subfamily 1 group B
member 1
gi|1089844|emb|CAA52152.1| retinoic acid receptor alpha 1 isoform [Gallus gallus]
Length = 460
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 113/240 (47%), Gaps = 56/240 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKK 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN- 121
+ +E + + T E ++I V +AH
Sbjct: 168 DVPKTECSESYIVTPEVE----------------------------ELIEKVRKAHQETF 199
Query: 122 ---CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
C+ + T + VSL + LW +F+ T + +
Sbjct: 200 PALCQLGKYTTNNSSEQRVSL---------------------DIDLWDKFSELSTKCIIK 238
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
VEFAK++PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 239 TVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 298
>gi|410919441|ref|XP_003973193.1| PREDICTED: retinoic acid receptor gamma-A-like [Takifugu rubripes]
Length = 481
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 111/236 (47%), Gaps = 49/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R
Sbjct: 98 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR------ 151
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ P + E +G ++ L + VS+AH
Sbjct: 152 ------NKKKKDVKEEVVLPENYELSGELEEL----------------VNKVSKAHQETF 189
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 190 ------------------PSLCQLGKYTTNSSSDHRVQLDLGLWDKFSELSTKCIIKIVE 231
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 232 FAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 287
>gi|14994035|gb|AAK76392.1| peroxisome proliferator-activated receptor beta 2 [Danio rerio]
Length = 368
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 118/252 (46%), Gaps = 50/252 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY RC R C V + +RN+CQYCRF+KCLA+GMS D++RYGR+P
Sbjct: 24 KGFFRRTIRMKLEYERCER--ACKVQKKSRNKCQYCRFQKCLALGMSHDAIRYGRMP--- 78
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
++E E P SS+ D K L + V+ A+ N
Sbjct: 79 ----EAEKKKLVAGLLAGENPQ------------SSSGTDLKTLAKH-----VNTAYLRN 117
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF---------AAHV 172
T++ R ++ S ++P V +++ +W Q HV
Sbjct: 118 LNMTKKRARSILTGKTS-----CTAPFVIHDMDSLWQAENGLVWNQLNGAPLNKEIGVHV 172
Query: 173 --------TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTF 224
+V+ + EFAK +PGF DL +DQ+ L+K G E + L L
Sbjct: 173 FYRCQCTTVETVRELTEFAKNIPGFVDLFLNDQVTLLKYGVHEAIFAMLPSLMNKDGLLV 232
Query: 225 SDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 233 ANGKGFVTREFL 244
>gi|195170932|ref|XP_002026265.1| GL24671 [Drosophila persimilis]
gi|194111160|gb|EDW33203.1| GL24671 [Drosophila persimilis]
Length = 527
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/53 (88%), Positives = 49/53 (92%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYG 55
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCL+ GMSRDS G
Sbjct: 435 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMSRDSGARG 487
>gi|442623145|ref|NP_001260854.1| hormone receptor-like in 46, isoform H [Drosophila melanogaster]
gi|440214256|gb|AGB93387.1| hormone receptor-like in 46, isoform H [Drosophila melanogaster]
Length = 529
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 131/284 (46%), Gaps = 64/284 (22%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R+ +C+V R+NRNRCQYCR +KCL +GMSRD+V++GR+ K+ R
Sbjct: 72 KGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 131
Query: 63 ERSDSETGSTRV---STTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH 119
E+ + E R + + A P SS+ Q+ SS +L +Y + ++ +
Sbjct: 132 EKVEDEVRFHRAQMRAQSDAAPDSSVYD---TQTPSSSDQLHHNNYNSYSGGYSNNEVGY 188
Query: 120 S-----NCEYTEEGTRR------LVRKPVSLPPSEVSSPEVAS------------STAEC 156
+ T + T + V P S + PE S + AE
Sbjct: 189 GSPYGYSASVTPQQTMQYDISADYVDSTTYEPRSTIIDPEFISHADGDINDVLIKTLAEA 248
Query: 157 HESQRLWLWQQFAAH----VTPSVQRVVEF--------------------------AKRV 186
H + L A H P V R++ + AK +
Sbjct: 249 HANTNTKLE---AVHDMFRKQPDVSRILYYKNLGQEELWLDCAEKLTQMIQNIIEFAKLI 305
Query: 187 PGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGM 228
PGF LSQDDQ++L+K G FEL I +SRL + +++ + D M
Sbjct: 306 PGFMRLSQDDQILLLKTGSFELAIVRMSRLLDLSQNAVLYGDVM 349
>gi|185133612|ref|NP_001117031.1| peroxisome proliferator-activated receptor beta2A [Salmo salar]
gi|90954691|emb|CAJ76240.1| peroxisome proliferator-activated receptor beta2A [Salmo salar]
Length = 434
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 122/256 (47%), Gaps = 56/256 (21%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY RC R C +++ NRN+CQYCRF+KCLA+GM D++RYGR+P
Sbjct: 88 KGFFRRTIRMKLEYERCER--ACKILKKNRNKCQYCRFQKCLALGMPHDAIRYGRMP--- 142
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDV-ILA--VSQAH 118
GAE + AG + + ELD L D+ LA V QA+
Sbjct: 143 ----------------GAEKKKLV--AGLL-----AEELDPHHLGGSDLKTLAKQVYQAY 179
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF---------- 168
N T++ R ++ S +SP V +++ +W Q
Sbjct: 180 LKNLIMTKKKARSILTGKTS-----CTSPFVIHDVDTLWQAESGLVWNQLIPGAPLTKVI 234
Query: 169 AAHV--------TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDS 220
HV +V+ + EFAK +PGF DL +DQ+ L+K G E + L
Sbjct: 235 GVHVFYRCQCTTVETVRELTEFAKNIPGFVDLFLNDQVTLLKHGVHEAIFAMLPSLMNKD 294
Query: 221 SLTFSDGM-YVTRQQL 235
L ++G +VTR+ L
Sbjct: 295 GLLVANGKGFVTREFL 310
>gi|1089846|emb|CAA55134.1| retinoic acid recptor alpha isoform 2-1 [Gallus gallus]
Length = 453
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 113/235 (48%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ +E + + T E ++I V +AH
Sbjct: 161 DVPKTECSESYIVTPEVE----------------------------ELIEKVRKAHQE-- 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P ++++E S + LW +F+ T + + VEF
Sbjct: 191 ---------------TFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AK++PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|195166577|ref|XP_002024111.1| GL22731 [Drosophila persimilis]
gi|194107466|gb|EDW29509.1| GL22731 [Drosophila persimilis]
Length = 881
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 18/125 (14%)
Query: 4 GFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 426 GFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKR-- 483
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E G+ P + G ++L +TELD + L + AV +AH C
Sbjct: 484 -----EKGAHPGRHAARAP----QNRGQQRAL--ATELDDQPRL----LAAVLRAHLETC 528
Query: 123 EYTEE 127
E+T+E
Sbjct: 529 EFTKE 533
>gi|391348497|ref|XP_003748483.1| PREDICTED: ecdysone-induced protein 78C-like [Metaseiulus
occidentalis]
Length = 250
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 70/97 (72%), Gaps = 6/97 (6%)
Query: 150 ASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW 209
+ STA+ E +R +WQ+FA TP++Q VEFAKRVPGF + +QDDQLILIK+GFFE+W
Sbjct: 30 SGSTADSMEMERFTMWQRFAGLGTPNIQDSVEFAKRVPGFLEFAQDDQLILIKLGFFEVW 89
Query: 210 IGYVSR------LTTDSSLTFSDGMYVTRQQLEVMYD 240
+ +VSR + ++TF+ G YVTR+QLE ++D
Sbjct: 90 LIHVSRSILAEEYVSRGAVTFAGGAYVTREQLEFVFD 126
>gi|145315397|gb|ABP62961.1| thyroid hormone receptor alpha B protein [Epinephelus coioides]
Length = 398
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 125/246 (50%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 62 KGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 121
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q+ P T+ + ++VI
Sbjct: 122 KRRLIEENRERRKKE-----------------EMVKSLQNRPEPTDSE------WEVIHL 158
Query: 114 VSQAH-HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
V++AH H+N + + +R LP SP +S + L + +F +
Sbjct: 159 VTEAHRHTNAQGAQWKQKRKF-----LPEKIGQSPVAPTSDG---DKVDLEAFSEFTKII 210
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT M V
Sbjct: 211 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAMRYDPESETLTLGGEMAV 270
Query: 231 TRQQLE 236
R+QL+
Sbjct: 271 KREQLK 276
>gi|189536156|ref|XP_691607.3| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Danio
rerio]
Length = 570
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 78/122 (63%), Gaps = 8/122 (6%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I Y+ C+++ CL++R+NRNRCQ+CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 135 KGFFRRSIQQNINYKMCVKNENCLIMRMNRNRCQHCRFKKCLSVGMSRDAVRFGRIPKRE 194
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLL-----TYDVILAVSQ 116
++R E S S E +ET+ + PS E +K+ + Y I +Q
Sbjct: 195 KQRLLDEMQSYMNSLN--ESSMGMETSPQHEPPPSPIENQSKEAIGALSRAYQDIFTNTQ 252
Query: 117 AH 118
H
Sbjct: 253 DH 254
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 25/126 (19%)
Query: 115 SQAHHSN-----------CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLW 163
+QAH+S+ C + +++ P++ P VS+P V+S
Sbjct: 344 TQAHYSSYTASQSQSPASCPFKLAAGSKVLACPLNACP--VSAPGVSSQ----------Q 391
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLT-TDSS 221
+W+ F+ TP+V+ VVEFAK +PGF +L Q DQ++L+K G F+ L + + S + S
Sbjct: 392 VWESFSQCFTPAVREVVEFAKGIPGFQELCQHDQVMLLKAGTFQVLMVRFCSLFNHKERS 451
Query: 222 LTFSDG 227
+TF +G
Sbjct: 452 VTFLNG 457
>gi|194858004|ref|XP_001969081.1| GG25225 [Drosophila erecta]
gi|190660948|gb|EDV58140.1| GG25225 [Drosophila erecta]
Length = 702
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 124/270 (45%), Gaps = 62/270 (22%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R+ +C+V R+NRNRCQYCR +KCL +GMSRD+V++GR+ K+ R
Sbjct: 287 KGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 346
Query: 63 ERSDSETGSTRV---STTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH 119
E+ + E R + + A P SS+ Q+ SS +L +Y + ++ +
Sbjct: 347 EKVEDEVRFHRAQMRAQSDAAPDSSVYD---TQTPSSSDQLHHNNYNSYSGGYSNNEVGY 403
Query: 120 S-----NCEYTEEGTRR------LVRKPVSLPPSEVSSPEVAS------------STAEC 156
+ T + T + V P S + PE S + AE
Sbjct: 404 GSPYGYSASVTPQQTMQYDISADYVDSTTYEPRSTIIDPEFISHADGDINDVLIKTLAEA 463
Query: 157 HESQRLWLWQQFAAH----VTPSVQRVVEF--------------------------AKRV 186
H + L A H P V R++ + AK +
Sbjct: 464 HANTNTKLE---AVHDMFRKQPDVSRILYYKNLGQEELWLDCAEKLTQMIQNIIEFAKLI 520
Query: 187 PGFCDLSQDDQLILIKMGFFELWIGYVSRL 216
PGF LSQDDQ++L+K G FEL I +SRL
Sbjct: 521 PGFMRLSQDDQILLLKTGSFELAIVRMSRL 550
>gi|68132022|gb|AAY85277.1| Rev-erbgamma-A [Danio rerio]
Length = 462
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 78/122 (63%), Gaps = 8/122 (6%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I Y+ C+++ CL++R+NRNRCQ+CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 27 KGFFRRSIQQNINYKMCVKNENCLIMRMNRNRCQHCRFKKCLSVGMSRDAVRFGRIPKRE 86
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLL-----TYDVILAVSQ 116
++R E S S E +ET+ + PS E +K+ + Y I +Q
Sbjct: 87 KQRLLDEMQSYMNSLN--ESSMGMETSPQHEPPPSPIENQSKEAIGALSRAYQDIFTNTQ 144
Query: 117 AH 118
H
Sbjct: 145 DH 146
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 25/126 (19%)
Query: 115 SQAHHSN-----------CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLW 163
+QAH+S+ C + +++ P++ P VS+P V+S
Sbjct: 236 TQAHYSSYTASQSQSPASCPFKLAAGSKVLACPLNACP--VSAPGVSSQ----------Q 283
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLT-TDSS 221
+W+ F+ TP+V+ VVEFAK +PGF +L Q DQ++L+K G F+ L + + S + S
Sbjct: 284 VWESFSQCFTPAVREVVEFAKGIPGFQELCQHDQVMLLKAGTFQVLMVRFCSLFNHKERS 343
Query: 222 LTFSDG 227
+TF +G
Sbjct: 344 VTFLNG 349
>gi|405965497|gb|EKC30866.1| Retinoic acid receptor beta [Crassostrea gigas]
Length = 501
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 118/238 (49%), Gaps = 38/238 (15%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS+QK ++Y C +D C + ++ RNRCQYCR +KC A GMS+++VR R K+
Sbjct: 133 KGFFRRSVQKNMQYTCHKDKNCPINKVTRNRCQYCRLQKCYATGMSKEAVRNDRNKKKKP 192
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ E PSS ++ TE + V+ + +AH
Sbjct: 193 K---------------LENPSS--------NIEEVTEDEQS------VLQEILEAHRVTF 223
Query: 123 EYTEEGTRRLVRKPVSLPPS--EVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVV 180
EE V P+S + ++ + E AS + ++ LW + + + ++V
Sbjct: 224 PQIEEA----VLSPMSCHDTRGDIENDE-ASKENSNQKKEKSMLWDKVTELSSKGIIKIV 278
Query: 181 EFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDSS-LTFSDGMYVTRQQLE 236
EFAK++PGF LS DQ+ L+K E+ I + SR D + F+ G+ + R+QL+
Sbjct: 279 EFAKKMPGFTSLSTSDQITLLKAACLEIMILRLCSRYDLDKDVMLFNGGLSLDREQLQ 336
>gi|130493601|ref|NP_001076288.1| RAR-related orphan receptor C a [Danio rerio]
gi|126508457|gb|ABO15414.1| retinoid-related orphan receptor c [Danio rerio]
Length = 479
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 136/323 (42%), Gaps = 89/323 (27%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVR--------- 53
+GFFRRS Q Y C R C++ R NRNRCQ+CR +KCLA+GMSRD+V+
Sbjct: 31 KGFFRRSQQNNAMYSCSRQRNCIIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 90
Query: 54 ---YGRVPK--RSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTEL----DTKQ 104
Y V K +S+ER+ G+ S TG E + S SST L D
Sbjct: 91 DSLYAEVQKHQQSQERAGG-LGNGISSHTGDEAGENGNGHSRAYSRGSSTTLSDLDDITT 149
Query: 105 L---LTYDVILAVSQAH---------------------------------HSNCEYTEEG 128
L L +D+ L +A H EY
Sbjct: 150 LPDGLLFDLPLTPEEAADYCSLELLGGSSGNSSSSQSSPESNRQEFGDVTHIKHEYMSPH 209
Query: 129 TRRLVRKPVSLPPSEVSSPEVA------------SSTAECHESQRL-W------------ 163
L + + PP S E+ +S E +RL W
Sbjct: 210 ESGLFTRSILNPPEGCSLMEIERITQNVIKSHIETSQYSTEELKRLAWTLYTPEEIRVYQ 269
Query: 164 ------LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLT 217
LWQQ A +T ++Q VVEFAKR+ GF DLSQ+DQ+IL+K G ++ + + R
Sbjct: 270 NKPTEMLWQQCAVQLTNAIQYVVEFAKRISGFMDLSQNDQIILLKAGCLDVLLIRMCRAY 329
Query: 218 T--DSSLTFSDGMYVTRQQLEVM 238
+++L F DG + + Q + +
Sbjct: 330 NPINNTLLF-DGKFASPQLFKAL 351
>gi|292629355|ref|XP_700687.4| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Danio
rerio]
Length = 576
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 70/96 (72%), Gaps = 12/96 (12%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I Y+ C+++ CL++R+NRNRCQ+CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 140 KGFFRRSIQQNIHYKMCVKNENCLIMRMNRNRCQHCRFKKCLSVGMSRDAVRFGRIPKRE 199
Query: 62 RER----------SDSETGSTRVS-TTGAEPPSSLE 86
++R S +E+ S + TT E PSS E
Sbjct: 200 KQRLLDEMQSYMNSLNESASMDIGCTTPTETPSSPE 235
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 157 HESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR 215
H SQ++W + F+ TP+V+ VVEFAK +PGF LSQ DQ++L+K G F+ L + + S
Sbjct: 393 HSSQQVW--ESFSQCFTPAVKEVVEFAKSIPGFQALSQHDQVMLLKAGTFQVLMVRFCSL 450
Query: 216 LTT-DSSLTFSDGMYVTRQQLEVM 238
+ ++TF +G L V+
Sbjct: 451 FNAKERTVTFLNGQTYPLSYLRVL 474
>gi|268529532|ref|XP_002629892.1| C. briggsae CBR-NHR-23 protein [Caenorhabditis briggsae]
Length = 597
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 113/264 (42%), Gaps = 64/264 (24%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R C+V R+NRNRCQYCR KKC+ +GMSRD+V++GR+ K+ R
Sbjct: 188 KGFFRRSQSSIVNYQCPRQKNCIVDRVNRNRCQYCRLKKCIELGMSRDAVKFGRMSKKQR 247
Query: 63 ERSDSETGSTRVSTTGAE-------------PPSSLE--------------TAGPVQSLP 95
E+ + E R+ AE PP S T+ PV P
Sbjct: 248 EKVEDE---VRMHKQLAEASGLGYHIYGDYSPPPSHNYIFDQSMYGHYPSGTSTPVNGYP 304
Query: 96 ---SSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASS 152
+T + Y +V+ H G S P +V +V S
Sbjct: 305 IAMPATPVTPMPQNMYGANPSVATGSHYVAHQATGG---------SFPSPQVPEEDVVSR 355
Query: 153 TAECHESQRLWL----------------------WQQFAAHVTPSVQRVVEFAKRVPGFC 190
+ Q L W+ F+ + P V+ ++EFAK V GF
Sbjct: 356 VISSFDQQHLDYRTNNAVCEVDPETFSRLDRADGWELFSLQLDPLVKTIIEFAKCVDGFM 415
Query: 191 DLSQDDQLILIKMGFFELWIGYVS 214
+L Q+ Q+ L+K FEL + + +
Sbjct: 416 NLPQETQIQLLKGSVFELCLIFAA 439
>gi|33386558|emb|CAD62448.1| peroxisome proliferator-activated receptor beta [Pleuronectes
platessa]
Length = 510
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 124/253 (49%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+++ ++EY RC R C +++ NRN+CQYCRF+KCL++GMS D++RYGR+P+
Sbjct: 164 KGFFRRTVRMKLEYDRCERS--CKILKKNRNKCQYCRFQKCLSLGMSHDAIRYGRMPEAE 221
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
R++ V+ AE + S P ++L T + V+ A+ N
Sbjct: 222 RKK--------LVAGLLAEELTV--------SKPGGSDLKT-------LAKQVNAAYLKN 258
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAA----------H 171
T++ R ++ S +SP V +++ +W Q A H
Sbjct: 259 LVMTKKRARSILTGKTS-----STSPFVIYDVDTLWKAESGLVWSQLLAGAPLTKEIGVH 313
Query: 172 V--------TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
V +V+ + EFAK +PGF DL +DQ+ L+K G E + L L
Sbjct: 314 VFYRCQCTTVETVRELTEFAKSIPGFQDLYLNDQVTLLKYGVHEAIFAMLPSLMNKDGLL 373
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 374 VANGKGFVTREFL 386
>gi|327263812|ref|XP_003216711.1| PREDICTED: retinoic acid receptor gamma-A-like [Anolis
carolinensis]
Length = 441
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 112/236 (47%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 100 KGFFRRSIQKNMIYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKD 159
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + S ++ P EL I VS+AH
Sbjct: 160 VKEEVVVDSYEMT-------------------PELEEL----------IQKVSKAHQETF 190
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 191 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 232
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 233 FAKRLPGFTTLTIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 288
>gi|341882910|gb|EGT38845.1| hypothetical protein CAEBREN_04090 [Caenorhabditis brenneri]
Length = 515
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 114/252 (45%), Gaps = 47/252 (18%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R C+V R+NRNRCQYCR KKC+ +GMSRD+V++GR+ K+ R
Sbjct: 109 KGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRLKKCIELGMSRDAVKFGRMSKKQR 168
Query: 63 ERSDSETGSTRVSTTGAE-------------PPSSL-------------ETAGPVQSLPS 96
E+ + E R+ AE PP S T+ PV P
Sbjct: 169 EKVEDE---VRMHKQLAEANGLGYQLYGEYSPPPSHGYCFDPNTMYYQSGTSTPVNGYPM 225
Query: 97 ST-ELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAE 155
+ ++ A + +S + T P P +V + ++S +
Sbjct: 226 PVPATPVTPNMPQNMYGATPSSANSTHYVAHQATGGSYPSPQVPPEEDVVARAISSFEQQ 285
Query: 156 CHESQ-----------------RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQL 198
H+ + R W+ F+ + P V+ ++EFAK V GF +L Q+ Q+
Sbjct: 286 HHDYRTNNAVCEIDPDTLQTLDRAGGWELFSKQLEPLVKVIIEFAKGVDGFMNLKQETQI 345
Query: 199 ILIKMGFFELWI 210
L+K FEL +
Sbjct: 346 QLLKGSVFELCL 357
>gi|312370914|gb|EFR19214.1| hypothetical protein AND_22872 [Anopheles darlingi]
Length = 307
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/48 (95%), Positives = 48/48 (100%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRD 50
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCL+VGMSRD
Sbjct: 203 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSVGMSRD 250
>gi|327263925|ref|XP_003216767.1| PREDICTED: nuclear receptor subfamily 1 group D member 2-like,
partial [Anolis carolinensis]
Length = 576
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 79/120 (65%), Gaps = 11/120 (9%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I Y+ C+++ C+++R+NRNRCQ+CRFKKCLAVGMSRD+VR+GR+PKR
Sbjct: 154 KGFFRRSIQQNINYKMCVKNENCMIMRMNRNRCQHCRFKKCLAVGMSRDAVRFGRIPKRE 213
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH 119
++R E S ++ T + S ET P+S E + I A+S+A+H
Sbjct: 214 KQRLLDEMQSYMNSLNETPMDVGLSPETDNASPPSPNSQE--------EEAISAISRAYH 265
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTT--DSS 221
+W++F+ TP+V+ VVEFAK +PGF L Q DQ++L+K G F++ + S L + +
Sbjct: 398 VWEEFSQCFTPAVKEVVEFAKSIPGFQLLCQQDQVMLLKAGTFQVLMVRFSSLFSPKEKV 457
Query: 222 LTFSDG 227
+TF G
Sbjct: 458 VTFLSG 463
>gi|312071333|ref|XP_003138560.1| nuclear receptor nhr-7B [Loa loa]
Length = 339
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 107/228 (46%), Gaps = 51/228 (22%)
Query: 14 IEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRERSDSETGSTR 73
+EYRCLRDGKC + RLNRNRCQ+CRF+KCLAVGMS VRYGR P+R + D+E
Sbjct: 1 MEYRCLRDGKCHIHRLNRNRCQFCRFRKCLAVGMS--PVRYGRTPRRKGDEIDNEN---- 54
Query: 74 VSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLV 133
PS E + + K+L T+ I V+ AH + C Y + L
Sbjct: 55 -------IPSWEEISKFTHYEVADV---AKRLRTF--IEKVTAAHLTCCNYLPSTLKDLE 102
Query: 134 RKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLS 193
+ + S SP + R LW + + R +EFAKR+P
Sbjct: 103 PRIIR-DLSNTKSPS----------TNRNQLWHSMNGALFEDLGRFIEFAKRIP------ 145
Query: 194 QDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTRQQLEVMY 239
+W+ ++SR +LTFS G+ +++QL ++Y
Sbjct: 146 --------------VWLVWISRAMNSRMGTLTFSHGITFSQEQLSIIY 179
>gi|68132032|gb|AAY85282.1| RORgamma-A [Danio rerio]
Length = 375
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 136/323 (42%), Gaps = 89/323 (27%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVR--------- 53
+GFFRRS Q Y C R C++ R NRNRCQ+CR +KCLA+GMSRD+V+
Sbjct: 31 KGFFRRSQQNNAMYSCSRQRNCIIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 90
Query: 54 ---YGRVPK--RSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTEL----DTKQ 104
Y V K +S+ER+ G+ S TG E + S SST L D
Sbjct: 91 DSLYAEVQKHQQSQERAGG-LGNGISSHTGDEAGENGNGHSRAFSRGSSTTLSDLDDITT 149
Query: 105 L---LTYDVILAVSQAH---------------------------------HSNCEYTEEG 128
L L +D+ L +A H EY
Sbjct: 150 LPDGLLFDLPLTPXEAADYCSLELLXGSSGNSSSSQSSPESNRQEFGDVTHIKHEYMSPH 209
Query: 129 TRRLVRKPVSLPPSEVSSPEVA------------SSTAECHESQRL-W------------ 163
L + + PP S E+ +S E +RL W
Sbjct: 210 ESGLFTRSILNPPEGCSLMEIERITQNVIKSHIETSQYSTEELKRLAWTLYTPEEIRVYQ 269
Query: 164 ------LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLT 217
LWQQ A +T ++Q VVEFAKR+ GF DLSQ+DQ+IL+K G ++ + + R
Sbjct: 270 NKPTEMLWQQCAVQLTNAIQYVVEFAKRISGFMDLSQNDQIILLKAGCLDVLLIRMCRAY 329
Query: 218 T--DSSLTFSDGMYVTRQQLEVM 238
+++L F DG + + Q + +
Sbjct: 330 NPINNTLLF-DGKFASPQLFKAL 351
>gi|301614419|ref|XP_002936679.1| PREDICTED: retinoic acid receptor gamma-A-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 476
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 49/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQ+CR +KC VGMS+++VR R
Sbjct: 131 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQFCRLQKCFQVGMSKEAVRNDR------ 184
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ P S E +P E ++I VS+AH
Sbjct: 185 ------NKKKKEIKEEVVVPDSYE-------MPPEME---------ELIQKVSKAHQETF 222
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 223 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELSTKCIIKIVE 264
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 265 FAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 320
>gi|341895989|gb|EGT51924.1| hypothetical protein CAEBREN_02985 [Caenorhabditis brenneri]
Length = 457
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 114/252 (45%), Gaps = 47/252 (18%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R C+V R+NRNRCQYCR KKC+ +GMSRD+V++GR+ K+ R
Sbjct: 51 KGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRLKKCIELGMSRDAVKFGRMSKKQR 110
Query: 63 ERSDSETGSTRVSTTGAE-------------PPSSL-------------ETAGPVQSLPS 96
E+ + E R+ AE PP S T+ PV P
Sbjct: 111 EKVEDE---VRMHKQLAEANGLGYQLYGEYSPPPSHGYCFDPNTMYYQSGTSTPVNGYPM 167
Query: 97 ST-ELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAE 155
+ ++ A + +S + T P P +V + ++S +
Sbjct: 168 PVPATPVTPNMPQNMYGATPSSANSTHYVAHQATGGSYPSPQVPPEEDVVARAISSFEQQ 227
Query: 156 CHESQ-----------------RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQL 198
H+ + R W+ F+ + P V+ ++EFAK V GF +L Q+ Q+
Sbjct: 228 HHDYRTNNAVCEIDPDTLQTLDRAGGWELFSKQLEPLVKVIIEFAKGVDGFMNLKQETQI 287
Query: 199 ILIKMGFFELWI 210
L+K FEL +
Sbjct: 288 QLLKGSVFELCL 299
>gi|218156228|dbj|BAH03346.1| retinoic acid receptor 2 [Eptatretus burgeri]
Length = 307
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 109/235 (46%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C R+ C++ ++ RNRCQYCR +KC VGMS++SVR R K+
Sbjct: 18 KGFFRRSIQKNMSYTCHREKCCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-- 75
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ G+ P E V+ T QL Y + HS+
Sbjct: 76 ----KDALKLECMENGSLTPEMEELVEKVRKAHEETFPSLYQLGKYTM--------HSST 123
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E+ V L L LW +F+ T + ++VEF
Sbjct: 124 EHR-----------VQLD---------------------LSLWDKFSELATKCIVKIVEF 151
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AK +PGF LS DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 152 AKHLPGFVGLSIADQITLLKAACLDILILRICTRYTPEKDTMTFSDGLTLNRTQM 206
>gi|301614421|ref|XP_002936680.1| PREDICTED: retinoic acid receptor gamma-A-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 459
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 49/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQ+CR +KC VGMS+++VR R
Sbjct: 114 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQFCRLQKCFQVGMSKEAVRNDR------ 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ P S E +P E ++I VS+AH
Sbjct: 168 ------NKKKKEIKEEVVVPDSYE-------MPPEME---------ELIQKVSKAHQETF 205
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 206 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELSTKCIIKIVE 247
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 248 FAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 303
>gi|301614423|ref|XP_002936681.1| PREDICTED: retinoic acid receptor gamma-A-like isoform 3 [Xenopus
(Silurana) tropicalis]
Length = 442
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 49/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQ+CR +KC VGMS+++VR R
Sbjct: 97 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQFCRLQKCFQVGMSKEAVRNDR------ 150
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ P S E +P E ++I VS+AH
Sbjct: 151 ------NKKKKEIKEEVVVPDSYE-------MPPEME---------ELIQKVSKAHQETF 188
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 189 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELSTKCIIKIVE 230
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 231 FAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 286
>gi|358251512|gb|AEU04705.1| retinoic acid receptor gamma [Lateolabrax japonicus]
Length = 501
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 110/236 (46%), Gaps = 49/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R
Sbjct: 98 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR------ 151
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ P S E +G ++ L + VS+AH
Sbjct: 152 ------NKKKKDVKEEVVLPESYELSGELEEL----------------VNKVSKAHQETF 189
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 190 ------------------PSLCQLGKYTTNSSSDHRVQLDLGLWDKFSELSTKCIIKIVE 231
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFELWIGYVS-RLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K ++ + + R T + ++ FSDG+ + R Q+
Sbjct: 232 FAKRLPGFTTLTIADQITLLKSACLDILMLRICIRYTPEQDTMAFSDGLTLNRTQM 287
>gi|348521576|ref|XP_003448302.1| PREDICTED: nuclear receptor subfamily 1 group D member 2-like
[Oreochromis niloticus]
Length = 706
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 83/118 (70%), Gaps = 9/118 (7%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I Y+ C+++ CL++R+NRNRCQ+CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 266 KGFFRRSIQQNINYKMCVKNENCLIMRMNRNRCQHCRFKKCLSVGMSRDAVRFGRIPKRE 325
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGP-VQSLPSSTELDTKQLLTYDVILAVSQAH 118
++R E S S + ++++ P V+ P+ST+ T + + I A+S+A+
Sbjct: 326 KQRLLDEMQSYMNSLNES---AAMDMDSPSVRESPTSTDDGTSK----EAIGAISRAY 376
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF +LSQ DQ++L+K G F++ + L + +
Sbjct: 528 IWESFSQCFTPAVKEVVEFAKGIPGFQELSQQDQVMLLKSGTFQVLMVRFCTLFNAGEHT 587
Query: 222 LTFSDG 227
+TF +G
Sbjct: 588 VTFLNG 593
>gi|264612|gb|AAB25198.1| retinoic acid receptor isoform alpha 2.1 [Xenopus sp.]
Length = 464
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 110/236 (46%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SV
Sbjct: 114 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESV---------- 163
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
R+D A ++S S E T D+I V +AH
Sbjct: 164 -RNDRNKKKKESPKPEA-----------IESYILSPE-------TQDLIEKVQKAHQE-- 202
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P S ++E S + LW +F+ T + + VEF
Sbjct: 203 ---------------TFPALCQLGKYTTSFSSEQRVSLDIDLWDKFSELSTKCIIKTVEF 247
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AK++PGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ + R Q+
Sbjct: 248 AKQLPGFTTLTIADQITLLKSACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMH 303
>gi|432865203|ref|XP_004070467.1| PREDICTED: peroxisome proliferator-activated receptor delta
[Oryzias latipes]
Length = 517
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 122/253 (48%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+++ ++EY RC R C + + NRN+CQYCRF+KCL++GMS D++RYGR+P+
Sbjct: 171 KGFFRRTVRMKLEYERCERS--CKIQKKNRNKCQYCRFQKCLSLGMSHDAIRYGRMPEAE 228
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
R++ V+ AE + S P ++L T + V+ A+ N
Sbjct: 229 RKK--------LVAGLLAEEMN--------LSKPGGSDLKT-------LAKQVNTAYQKN 265
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF----------AAH 171
T++ R ++ S +SP V +++ +W Q H
Sbjct: 266 LSMTKKKARSILTGKTS-----STSPFVIYDVETLWKAESGLVWSQLVPGAPLTKEIGVH 320
Query: 172 V--------TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
V +V+ + EFAK +PGF DL +DQ+ L+K G E + L L
Sbjct: 321 VFYRCQCTTVETVRELTEFAKCIPGFVDLYLNDQVTLLKYGVHEAIFAMLPSLMNKDGLL 380
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 381 VANGKGFVTREFL 393
>gi|1039484|gb|AAB34983.1| hormone receptor 2 [Malacosoma disstria]
Length = 166
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 102/192 (53%), Gaps = 29/192 (15%)
Query: 10 IQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRER--SD 66
IQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR + R +
Sbjct: 1 IQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKARILAA 60
Query: 67 SETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTE 126
++ ++R A + ELD L V+ +AH CE+T
Sbjct: 61 MQSSTSRAHEQAA-----------------AAELDDAPRLLARVV----RAHLDTCEFTR 99
Query: 127 EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRV 186
+ + + P S P +A E Q + Q AHV ++ V++FA +
Sbjct: 100 DRVAAMRARARDCP--TYSQPTLACPLNPAPELQSEKEFSQRFAHV---IRGVIDFAGLI 154
Query: 187 PGFCDLSQDDQL 198
PGF L+QDD+
Sbjct: 155 PGFQLLTQDDKF 166
>gi|327263554|ref|XP_003216584.1| PREDICTED: nuclear receptor ROR-beta-like [Anolis carolinensis]
Length = 540
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 119/272 (43%), Gaps = 66/272 (24%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 112 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 171
Query: 63 E----------------------------------------RSDSETGSTRVSTTGAEPP 82
+ ++ETG T + + P
Sbjct: 172 DSLYAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNNETGGTYSNGHVIDLP 231
Query: 83 SS--LETAGPVQSLPSSTELD------TKQLLTYDVILAVSQAHHSNCE-------YTEE 127
S Q P + LD KQ YD+ + +S+C T
Sbjct: 232 KSEGYYNVDSAQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSCNNGQLAPGITMT 291
Query: 128 GTRRLVRKPVS--LPPSEVSSPEVASSTAECHESQRLWLWQ---------QFAAHVTPSV 176
R+ + + L + + E+ + H + + ++Q Q A +T ++
Sbjct: 292 EIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKVYQSKSREALWQQCAIQITHAI 351
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
Q VVEFAKR+ GF +L Q+DQ++L+K G E+
Sbjct: 352 QYVVEFAKRITGFMELCQNDQILLLKSGCLEV 383
>gi|50080136|dbj|BAD27474.1| thyroid hormone receptor alpha B [Conger myriaster]
Length = 409
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 125/246 (50%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC++VGM+ D V RV
Sbjct: 73 KGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVA 132
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q+ P T + +++I
Sbjct: 133 KRRLIEENRERRKKE-----------------EMVKTLQNRPEPTNSE------WELIRM 169
Query: 114 VSQAH-HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
V++AH H+N + + +R LP SP +S + L + +F +
Sbjct: 170 VTEAHRHTNAQGSHWKQKRKF-----LPEDIGQSPVAPTSDG---DKVDLEAFSEFTKII 221
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 222 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAV 281
Query: 231 TRQQLE 236
R+QL+
Sbjct: 282 KREQLK 287
>gi|125808571|ref|XP_001360799.1| GA17350 [Drosophila pseudoobscura pseudoobscura]
gi|195151019|ref|XP_002016447.1| GL10487 [Drosophila persimilis]
gi|54635971|gb|EAL25374.1| GA17350 [Drosophila pseudoobscura pseudoobscura]
gi|194110294|gb|EDW32337.1| GL10487 [Drosophila persimilis]
Length = 487
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 124/289 (42%), Gaps = 74/289 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDS----------- 51
+GFFRRS + Y+C R+ +C+V R+NRNRCQYCR +KCL +GMSRD+
Sbjct: 72 KGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 131
Query: 52 ------VRYGRVPKRSRERS-----------------------DSETGSTRVSTTGAEPP 82
VR+ R R++ + +S +G + G P
Sbjct: 132 EKVEDEVRFHRAQMRAQSDAAPDSSVYDTQTPSSSDQLHHNSYNSYSGGYSNNEVGYGSP 191
Query: 83 SSLE-TAGPVQSLPSSTELDTKQLLTY--------------------DVILAVSQAHHSN 121
+ P Q++ D TY DV++ H+N
Sbjct: 192 YGYSASVTPQQTMQYDISADYVDSTTYEPRSTIIDPEFISHADGDINDVLIKTLAEAHAN 251
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVE 181
E + RK ++S + + + LWL A +T +Q ++E
Sbjct: 252 TNTKLEAVHDMFRKQ-----QDISRILYYKNLGQ----EELWL--DCAEKLTQMIQNIIE 300
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGM 228
FAK +PGF LSQDDQ++L+K G FEL I +SRL + +++ + D M
Sbjct: 301 FAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDLSQNAVLYGDVM 349
>gi|291244718|ref|XP_002742241.1| PREDICTED: retinoic acid receptor, beta-like [Saccoglossus
kowalevskii]
Length = 645
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 111/236 (47%), Gaps = 56/236 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK ++Y C R+ KC++ ++ RNRCQYCR KC VGMS++ VR R KR
Sbjct: 277 KGFFRRSIQKNMQYTCHREQKCVINKVTRNRCQYCRLMKCFDVGMSKECVRNDRNKKRKA 336
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ +E S E++T+ D+++ +AH
Sbjct: 337 KHEVTE----------------------------SLEMNTEMEHIMDIVI---KAH---- 361
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P + P + + L ++Q + ++ VVEF
Sbjct: 362 --------------IETFPKDTPKPGFKTGS-----DTDLLMFQYVTDMSSRAIIMVVEF 402
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVS-RLT-TDSSLTFSDGMYVTRQQLE 236
AK++PGF L+ DQ+ L+K E+ + +S R D S+TF+ G+ ++ +QL+
Sbjct: 403 AKKLPGFLQLTTPDQITLLKAACLEIMVLRISYRFNRDDGSVTFTSGLTLSNKQLK 458
>gi|47228662|emb|CAG07394.1| unnamed protein product [Tetraodon nigroviridis]
Length = 539
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 57/63 (90%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
QGFFRRSIQ+ I Y+ C+++ CL++R+NRNRCQ+CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 70 QGFFRRSIQQNINYKMCVKNENCLIMRMNRNRCQHCRFKKCLSVGMSRDAVRFGRIPKRE 129
Query: 62 RER 64
++R
Sbjct: 130 KQR 132
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDS-S 221
+W+ F+ TP+V+ VVEFAK +PGF +LSQ DQ++L+K G F+ L + + + ++ +
Sbjct: 324 IWESFSQCFTPAVKEVVEFAKGIPGFQELSQHDQVMLLKSGTFQVLMVRFCTLFNAENHT 383
Query: 222 LTFSDG 227
+TF +G
Sbjct: 384 VTFLNG 389
>gi|363742965|ref|XP_003642756.1| PREDICTED: nuclear receptor ROR-gamma-like [Gallus gallus]
Length = 437
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 128/280 (45%), Gaps = 63/280 (22%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR-- 60
+GFFRRS Q + Y C R C + R +RNRCQ+CR +KCL +GMSRD+V++GR+ K+
Sbjct: 36 KGFFRRSQQSSLSYACSRQQNCPIDRASRNRCQHCRLQKCLRLGMSRDAVKFGRMSKKQR 95
Query: 61 ------------------------SRERSDSETGSTRVSTTGAE----PPSSL------- 85
RER+ T S + G PP +
Sbjct: 96 DRLHAEVQQQLEQQQRDRDRDQDWERERAAQGTPSFTIGLPGCRGLPLPPGTPGCPGVTA 155
Query: 86 ------------ETAGP-VQSLPSSTELDTKQLLTYDVIL-AVSQAHHSNCEYTEEGTRR 131
+ GP V+ P + + L +++ +V +H C+ E +
Sbjct: 156 EGERREMATQNGDEDGPGVRPHPEAGSILESPALEIELLTQSVLASHRETCQLRAEELQ- 214
Query: 132 LVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCD 191
+R+ + S EV + + E +WQ+ A +T ++QRVVEFAKR+ GF +
Sbjct: 215 -LRRGETF-----SREEVCAFQKKPPEE----MWQRCACRLTEAIQRVVEFAKRLRGFME 264
Query: 192 LSQDDQLILIKMGFFELWIGYVSR-LTTDSSLTFSDGMYV 230
L Q+DQ++L+K G E+ + + R D+ F +G Y
Sbjct: 265 LCQNDQIVLLKAGAMEVVLVRMCRAFNPDNRTVFFEGKYA 304
>gi|28558767|sp|P28699.2|RARG_XENLA RecName: Full=Retinoic acid receptor gamma; Short=RAR-gamma;
AltName: Full=Nuclear receptor subfamily 1 group B
member 3
Length = 476
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 112/239 (46%), Gaps = 55/239 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQ+CR +KC VGMS+++VR R
Sbjct: 131 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQFCRLQKCFQVGMSKEAVR------NDR 184
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH--- 119
+ E V E P +E ++I VS+AH
Sbjct: 185 NKKKKEIKEEVVLPDSYEMPPEME----------------------ELIQKVSKAHQETF 222
Query: 120 -SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
S C+ + T +S+A+ L LW +F+ T + +
Sbjct: 223 PSLCQLGKYTT---------------------NSSADQRVQLDLGLWDKFSELSTKCIIK 261
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
+VEFAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 262 IVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 320
>gi|348562363|ref|XP_003466980.1| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Cavia
porcellus]
Length = 611
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C +IR+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 151 KGFFRRSIQQNIQYKRCLKNENCSIIRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 210
Query: 62 RERSDSE 68
++R +E
Sbjct: 211 KQRMLAE 217
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 432 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 491
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 492 VMFLSRTTYSLQELGAM 508
>gi|390476422|ref|XP_002759706.2| PREDICTED: retinoic acid receptor beta isoform 1 [Callithrix
jacchus]
Length = 448
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 110/235 (46%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD LT + A + S C
Sbjct: 161 ETSKQECR---------------------ESYEMTAELDD---LTEKIRKAHQETFPSLC 196
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T V P +F+ T + ++VEF
Sbjct: 197 QLGKYTTNSSAEHRVPTGPGP---------------------RDKFSELATKCIIKIVEF 235
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 236 AKRLPGFTSLTIADQITLMKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 290
>gi|148223405|ref|NP_001090533.1| Thrb protein [Xenopus laevis]
gi|213964|gb|AAA49654.1| thyroid hormone receptor beta A1 protein [Xenopus laevis]
Length = 369
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 123/241 (51%), Gaps = 33/241 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+AVGM+ D V R+
Sbjct: 36 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDNKRLA 95
Query: 59 KRSR-ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQA 117
KR E + + + + + P P+ E + Q++T + +Q
Sbjct: 96 KRKLIEENREKRRKDEIQKSLVQKPE-----------PTQEEWELIQVVTEAHVATNAQG 144
Query: 118 HHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
H + R+ + + + P V++PE E + QF +TP++
Sbjct: 145 SHW------KQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSQFTKIITPAIT 189
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQL 235
RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR QL
Sbjct: 190 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL 249
Query: 236 E 236
+
Sbjct: 250 K 250
>gi|379697624|dbj|BAL70322.1| thyroid hormone receptor alpha B [Xenopus laevis]
Length = 418
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 125/241 (51%), Gaps = 33/241 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 82 KGFFRRTIQKNLHPSYSCKYDGCCIIDKVTRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 141
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR RV E +L+ ++ PSS E +++I V++AH
Sbjct: 142 KRKL------IEENRVRRRKEEMIKTLQQ----RTEPSSEE--------WELIRIVTEAH 183
Query: 119 HS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
S N + + RR P ++ +AS + L + +F +TP++
Sbjct: 184 RSTNAQGSHWKQRR------KFLPEDIGQSPMASMPD--GDKVDLEAFSEFTKIITPAIT 235
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQL 235
RVV+FAK++P F +L+ +DQ+IL+K E+ + R DS +LT S M V R+QL
Sbjct: 236 RVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEMAVKREQL 295
Query: 236 E 236
+
Sbjct: 296 K 296
>gi|195379020|ref|XP_002048279.1| GJ13880 [Drosophila virilis]
gi|194155437|gb|EDW70621.1| GJ13880 [Drosophila virilis]
Length = 490
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/48 (93%), Positives = 47/48 (97%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRD 50
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCL+ GMSRD
Sbjct: 441 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMSRD 488
>gi|432859606|ref|XP_004069177.1| PREDICTED: nuclear receptor subfamily 1 group D member 1-like
[Oryzias latipes]
Length = 568
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 57/63 (90%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I Y+ C+++ CL++R+NRNRCQ+CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 140 KGFFRRSIQQNIHYKMCVKNENCLIMRMNRNRCQHCRFKKCLSVGMSRDAVRFGRIPKRE 199
Query: 62 RER 64
++R
Sbjct: 200 KQR 202
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
+W+ F+ TP+V+ VVEFAK +PGF +LSQ DQ++L+K G F++ +
Sbjct: 390 VWESFSQCFTPAVKEVVEFAKSIPGFQNLSQHDQVMLLKSGTFQVLM 436
>gi|1729929|sp|Q02965.2|THB_RANCA RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear
receptor subfamily 1 group A member 2
gi|439454|gb|AAA53658.1| c-erbA-beta [Rana catesbeiana]
gi|387912442|dbj|BAM15696.1| thyroid hormone receptor beta [Glandirana rugosa]
Length = 373
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 123/241 (51%), Gaps = 33/241 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+AVGM+ D V R+
Sbjct: 40 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLA 99
Query: 59 KRSR-ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQA 117
KR E + + + T + P P+ E + Q++T + +Q
Sbjct: 100 KRKLIEENREKRRKDELQKTLVQKPE-----------PTPEEWELIQVVTEAHVATNAQG 148
Query: 118 HHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
H + R+ + + + P V++PE E + QF +TP++
Sbjct: 149 SHW------KQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSQFTKIITPAIT 193
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQL 235
RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR QL
Sbjct: 194 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL 253
Query: 236 E 236
+
Sbjct: 254 K 254
>gi|218156238|dbj|BAH03351.1| retinoic acid receptor alpha [Lepisosteus platyrhincus]
Length = 388
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 114/239 (47%), Gaps = 56/239 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C R+ C++ ++ RNRCQYCR +KCL VGMS++SVR R K+
Sbjct: 18 KGFFRRSIQKNMVYTCHREKNCIINKVTRNRCQYCRLQKCLEVGMSKESVRNDRNKKKKD 77
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH--- 119
E+ T S +S T D+I V +AH
Sbjct: 78 EKKQECTESYVLSPA-----------------------------TEDMIAKVRKAHQETF 108
Query: 120 -SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
S C+ + T + VSL + LW +F+ T + +
Sbjct: 109 PSLCQLGKYTTNNSSDQRVSL---------------------DIDLWDKFSELSTKCIIK 147
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
VEFAK++PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 148 TVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 206
>gi|113931636|ref|NP_001039270.1| thyroid hormone receptor beta [Xenopus (Silurana) tropicalis]
gi|91754112|dbj|BAE93231.1| thyroid hormone receptor beta [Xenopus (Silurana) tropicalis]
Length = 383
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 127/243 (52%), Gaps = 37/243 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+AVGM+ D V R+
Sbjct: 50 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLA 109
Query: 59 KRSR-ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQA 117
KR E + + + + + P P+ E +++I VS+A
Sbjct: 110 KRKLIEENREKRRKDEIQKSLVQKPE-----------PTQEE--------WELIQVVSEA 150
Query: 118 H-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPS 175
H +N + + + R+ + + + P VS+PE E + QF +TP+
Sbjct: 151 HVATNAQGSHWKQKRKFLPEDIGQAPI-VSAPEGGKVDLEA--------FSQFTKIITPA 201
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQ 233
+ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 202 ITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRG 261
Query: 234 QLE 236
QL+
Sbjct: 262 QLK 264
>gi|1710711|sp|P51126.1|RARA_XENLA RecName: Full=Retinoic acid receptor alpha; Short=RAR-alpha;
AltName: Full=Nuclear receptor subfamily 1 group B
member 1
Length = 458
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 110/236 (46%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SV
Sbjct: 109 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESV---------- 158
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
R+D A ++S S E T D+I V +AH
Sbjct: 159 -RNDRNKKKKESPKPEA-----------IESYILSPE-------TQDLIEKVQKAHQE-- 197
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P S ++E S + LW +F+ T + + VEF
Sbjct: 198 ---------------TFPALCQLGKYTTSFSSEQRVSLDIDLWDKFSELSTKCIIKTVEF 242
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AK++PGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ + R Q+
Sbjct: 243 AKQLPGFTTLTIADQITLLKSACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMH 298
>gi|148229725|ref|NP_001090182.1| thyroid hormone receptor beta-A [Xenopus laevis]
gi|135713|sp|P18117.1|THBA_XENLA RecName: Full=Thyroid hormone receptor beta-A; Short=TRbetaA;
Short=xTR; AltName: Full=Nuclear receptor subfamily 1
group A member 2-A
gi|213977|gb|AAA49656.1| thyroid hormone receptor beta A5 protein [Xenopus laevis]
Length = 373
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 123/241 (51%), Gaps = 33/241 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+AVGM+ D V R+
Sbjct: 40 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDNKRLA 99
Query: 59 KRSR-ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQA 117
KR E + + + + + P P+ E + Q++T + +Q
Sbjct: 100 KRKLIEENREKRRKDEIQKSLVQKPE-----------PTQEEWELIQVVTEAHVATNAQG 148
Query: 118 HHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
H + R+ + + + P V++PE E + QF +TP++
Sbjct: 149 SHW------KQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSQFTKIITPAIT 193
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQL 235
RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR QL
Sbjct: 194 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL 253
Query: 236 E 236
+
Sbjct: 254 K 254
>gi|404321323|gb|AFR56560.1| thyroid receptor alpha, partial [Oncorhynchus nerka]
Length = 308
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 125/241 (51%), Gaps = 33/241 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRF+KC+AVGM+ D V RV
Sbjct: 10 KGFFRRTIQKNLHPAYSCKYDGCCIIDKITRNQCQLCRFRKCIAVGMAMDLVLDDSKRVA 69
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR R+ E E +Q+ P E D+ + +++I V++AH
Sbjct: 70 KR------------RLIEENREKRKKDEIVKTLQTRP---EPDSSE---WELIRHVTEAH 111
Query: 119 -HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
H+N + + +R LP SP V + + L + +F +TP++
Sbjct: 112 RHTNAQGSHWKQKRKF-----LPEDIGQSPGVPTPDG---DKVDLEAFSEFTKIITPAIT 163
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQL 235
RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V R+QL
Sbjct: 164 RVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQL 223
Query: 236 E 236
+
Sbjct: 224 K 224
>gi|65032|emb|CAA42039.1| retinoc acid receptor gamma B [Xenopus laevis]
Length = 442
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 109/235 (46%), Gaps = 47/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQ+CR +KC VGMS+++VR R
Sbjct: 97 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQFCRLQKCFQVGMSKEAVR------NDR 150
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ E V E P +E ++I VS+AH
Sbjct: 151 NKKKKEIKEEVVLPDSYEMPPEME----------------------ELIQKVSKAHQE-- 186
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 187 ---------------TFPSLCQLGKYTTNSSADQRVQLDLGLWDKFSELSTKCIIKIVEF 231
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 232 AKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 286
>gi|387862036|gb|AFK08805.1| peroxisome proliferator-activated receptor beta, partial
[Sebastiscus marmoratus]
Length = 359
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 121/253 (47%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+++ ++EY RC R C + + NRN+CQYCRF+KCL++GMS D++RYGR+P+
Sbjct: 24 KGFFRRTVRMKLEYDRCERS--CKIQKKNRNKCQYCRFQKCLSLGMSHDAIRYGRMPEAE 81
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
R++ + + V+ S P ++L T + V+ A+ N
Sbjct: 82 RKKLVAGLLAEEVNL----------------SKPGGSDLKT-------LAKQVNAAYLKN 118
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF----------AAH 171
T++ R ++ S +SP V +++ +W Q H
Sbjct: 119 LIMTKKRARSILSGKTS-----STSPFVIYDMDTLWKAESGLVWSQLVPGAPLTKEIGVH 173
Query: 172 V--------TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
V +V+ + EFAK +PGF DL +DQ+ L+K G E + L L
Sbjct: 174 VFYRCQCTTVETVRELTEFAKSIPGFVDLYLNDQVTLLKYGVHEAIFAMLPSLMNKDGLL 233
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 234 VANGKGFVTREFL 246
>gi|348521356|ref|XP_003448192.1| PREDICTED: peroxisome proliferator-activated receptor delta
[Oreochromis niloticus]
Length = 512
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 123/253 (48%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+++ ++EY RC R C + + NRN+CQYCRF+KCL++GMS D++RYGR+P+
Sbjct: 166 KGFFRRTVRMKLEYERCERS--CKIQKKNRNKCQYCRFQKCLSLGMSHDAIRYGRMPEAE 223
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
R++ V+ AE + S P ++L T + V+ A+ N
Sbjct: 224 RKK--------LVAGILAEELNV--------SKPGGSDLKT-------LAKQVNTAYQKN 260
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF----------AAH 171
T++ R ++ + + +SP V +++ +W Q H
Sbjct: 261 LSMTKKRARSIL-----MGKTSSTSPFVIYDVDTLWKAESGLVWSQLTPGAPLTKEIGVH 315
Query: 172 V--------TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
V +V+ + EFAK +PGF DL +DQ+ L+K G E + L L
Sbjct: 316 VFYRCQCTTVETVRELTEFAKCIPGFVDLFLNDQVTLLKYGVHEAIFAMLPSLMNKDGLL 375
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 376 VANGKGFVTREFL 388
>gi|348507669|ref|XP_003441378.1| PREDICTED: nuclear receptor subfamily 1 group D member 1-like
[Oreochromis niloticus]
Length = 597
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 57/63 (90%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I Y+ C+++ CL++R+NRNRCQ+CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 163 KGFFRRSIQQNIHYKMCVKNENCLIMRMNRNRCQHCRFKKCLSVGMSRDAVRFGRIPKRE 222
Query: 62 RER 64
++R
Sbjct: 223 KQR 225
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 35/47 (74%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
+W+ F+ TP+V+ VVEFAK +PGF LSQ DQ++L+K G F++ +
Sbjct: 419 VWESFSQCFTPAVKEVVEFAKSIPGFQTLSQHDQVMLLKSGTFQVLM 465
>gi|444714014|gb|ELW54902.1| Nuclear receptor subfamily 1 group D member 1 [Tupaia chinensis]
Length = 612
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 152 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 211
Query: 62 RERSDSE 68
++R +E
Sbjct: 212 KQRMLAE 218
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 433 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 492
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 493 VMFLSRTTYSLQELGAM 509
>gi|387539836|gb|AFJ70545.1| nuclear receptor subfamily 1 group D member 1 [Macaca mulatta]
Length = 613
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 152 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 211
Query: 62 RERSDSETGS 71
++R +E S
Sbjct: 212 KQRMLAEMQS 221
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 434 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 493
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 494 VMFLSRTTYSLQELGAM 510
>gi|1839488|gb|AAB47116.1| retinoic acid receptor gamma isoform 2.2 [Xenopus laevis]
Length = 442
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 109/235 (46%), Gaps = 47/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQ+CR +KC VGMS+++VR R
Sbjct: 97 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQFCRLQKCFQVGMSKEAVR------NDR 150
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ E V E P +E ++I VS+AH
Sbjct: 151 NKKKKEIKEEVVLPDSYEMPPEME----------------------ELIQKVSKAHQE-- 186
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 187 ---------------TFPSLCQLGKYTTNSSADQRVRLDLGLWDKFSELSTKCIIKIVEF 231
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 232 AKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 286
>gi|6175061|sp|P18115.2|THAB_XENLA RecName: Full=Thyroid hormone receptor alpha-B; Short=TRalphaB;
AltName: Full=Nuclear receptor subfamily 1 group A
member 1-B
gi|1377893|gb|AAC38034.1| thyroid hormone alpha B receptor [Xenopus laevis]
Length = 418
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 124/241 (51%), Gaps = 33/241 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 82 KGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 141
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR RV E +L+ + PSS E +++I V++AH
Sbjct: 142 KRKL------IEENRVRRRKEEMIKTLQQ----RPEPSSEE--------WELIRIVTEAH 183
Query: 119 HS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
S N + + RR P ++ +AS + L + +F +TP++
Sbjct: 184 RSTNAQGSHWKQRR------KFLPEDIGQSPMASMPD--GDKVDLEAFSEFTKIITPAIT 235
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQL 235
RVV+FAK++P F +L+ +DQ+IL+K E+ + R DS +LT S M V R+QL
Sbjct: 236 RVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEMAVKREQL 295
Query: 236 E 236
+
Sbjct: 296 K 296
>gi|148224349|ref|NP_001081663.1| retinoic acid receptor gamma [Xenopus laevis]
gi|1839486|gb|AAB47115.1| retinoic acid receptor gamma isoform 2.1 [Xenopus laevis]
Length = 442
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 109/235 (46%), Gaps = 47/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQ+CR +KC VGMS+++VR R
Sbjct: 97 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQFCRLQKCFQVGMSKEAVR------NDR 150
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ E V E P +E ++I VS+AH
Sbjct: 151 NKKKKEIKEEVVLPDSYEMPPEME----------------------ELIQKVSKAHQE-- 186
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 187 ---------------TFPSLCQLGKYTTNSSADQRVRLDLGLWDKFSELSTKCIIKIVEF 231
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
AKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 232 AKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 286
>gi|426348347|ref|XP_004041798.1| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 153 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 212
Query: 62 RERSDSETGS 71
++R +E S
Sbjct: 213 KQRMLAEMQS 222
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 435 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 494
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 495 VMFLSRTTYSLQELGAM 511
>gi|60654203|gb|AAX29794.1| nuclear receptor subfamily 1 group D member 1 [synthetic construct]
Length = 615
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 153 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 212
Query: 62 RERSDSETGS 71
++R +E S
Sbjct: 213 KQRMLAEMQS 222
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 435 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 494
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 495 VMFLSRTTYSLQELGAM 511
>gi|380818212|gb|AFE80980.1| nuclear receptor subfamily 1 group D member 1 [Macaca mulatta]
gi|383423059|gb|AFH34743.1| nuclear receptor subfamily 1 group D member 1 [Macaca mulatta]
gi|384950492|gb|AFI38851.1| nuclear receptor subfamily 1 group D member 1 [Macaca mulatta]
Length = 613
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 152 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 211
Query: 62 RERSDSETGS 71
++R +E S
Sbjct: 212 KQRMLAEMQS 221
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 434 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 493
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 494 VMFLSRTTYSLQELGAM 510
>gi|410899438|ref|XP_003963204.1| PREDICTED: nuclear receptor subfamily 1 group D member 2-like
[Takifugu rubripes]
Length = 545
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 57/63 (90%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I Y+ C+++ CL++R+NRNRCQ+CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 109 KGFFRRSIQQNINYKMCVKNENCLIMRMNRNRCQHCRFKKCLSVGMSRDAVRFGRIPKRE 168
Query: 62 RER 64
++R
Sbjct: 169 KQR 171
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDS-S 221
+W+ F+ TP+V+ VVEFAK +PGF +LSQ DQ++L+K G F+ L + + + + +
Sbjct: 367 IWESFSQCFTPAVKEVVEFAKGIPGFQELSQHDQVMLLKSGTFQVLMVRFCTLFNAEKHT 426
Query: 222 LTFSDG 227
+TF +G
Sbjct: 427 VTFLNG 432
>gi|403304593|ref|XP_003942879.1| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Saimiri
boliviensis boliviensis]
Length = 615
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 154 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 213
Query: 62 RERSDSE 68
++R +E
Sbjct: 214 KQRMLAE 220
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 436 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 495
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 496 VMFLSRTTYSLQELGAM 512
>gi|397522886|ref|XP_003831479.1| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Pan
paniscus]
Length = 614
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 153 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 212
Query: 62 RERSDSETGS 71
++R +E S
Sbjct: 213 KQRMLAEMQS 222
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 435 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 494
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 495 VMFLSRTTYSLQELGAM 511
>gi|355707861|gb|AES03087.1| nuclear receptor subfamily 1, group D, member 1 [Mustela putorius
furo]
Length = 619
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 156 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 215
Query: 62 RERSDSE 68
++R +E
Sbjct: 216 KQRMLAE 222
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 441 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 500
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 501 VMFLSRTTYSLQELGAM 517
>gi|13430848|ref|NP_068370.1| nuclear receptor subfamily 1 group D member 1 [Homo sapiens]
gi|114667603|ref|XP_511468.2| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Pan
troglodytes]
gi|119100|sp|P20393.1|NR1D1_HUMAN RecName: Full=Nuclear receptor subfamily 1 group D member 1;
AltName: Full=Rev-erbA-alpha; AltName:
Full=V-erbA-related protein 1; Short=EAR-1
gi|537520|gb|AAA52335.1| triiodothyronine receptor [Homo sapiens]
gi|33525229|gb|AAH56148.1| Nuclear receptor subfamily 1, group D, member 1 [Homo sapiens]
gi|60820040|gb|AAX36521.1| nuclear receptor subfamily 1 group D member 1 [synthetic construct]
gi|61363220|gb|AAX42355.1| nuclear receptor subfamily 1 group D member 1 [synthetic construct]
gi|112180498|gb|AAH47875.1| Nuclear receptor subfamily 1, group D, member 1 [Homo sapiens]
gi|119581040|gb|EAW60636.1| nuclear receptor subfamily 1, group D, member 1 [Homo sapiens]
gi|208966878|dbj|BAG73453.1| nuclear receptor subfamily 1, group D, member 1 [synthetic
construct]
gi|325495533|gb|ADZ17372.1| nuclear receptor Rev-ErbA-alpha [Homo sapiens]
gi|410215240|gb|JAA04839.1| nuclear receptor subfamily 1, group D, member 1 [Pan troglodytes]
gi|410262434|gb|JAA19183.1| nuclear receptor subfamily 1, group D, member 1 [Pan troglodytes]
gi|410262436|gb|JAA19184.1| nuclear receptor subfamily 1, group D, member 1 [Pan troglodytes]
gi|410306374|gb|JAA31787.1| nuclear receptor subfamily 1, group D, member 1 [Pan troglodytes]
gi|410353607|gb|JAA43407.1| nuclear receptor subfamily 1, group D, member 1 [Pan troglodytes]
gi|410353609|gb|JAA43408.1| nuclear receptor subfamily 1, group D, member 1 [Pan troglodytes]
Length = 614
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 153 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 212
Query: 62 RERSDSETGS 71
++R +E S
Sbjct: 213 KQRMLAEMQS 222
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 435 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 494
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 495 VMFLSRTTYSLQELGAM 511
>gi|327275471|ref|XP_003222497.1| PREDICTED: nuclear receptor subfamily 1 group D member 1-like
[Anolis carolinensis]
Length = 611
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 70/97 (72%), Gaps = 5/97 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKC+ VGMSRD+VR+GR+PKR
Sbjct: 163 KGFFRRSIQQNIQYKKCLKNETCNIVRINRNRCQQCRFKKCMGVGMSRDAVRFGRIPKRE 222
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSST 98
++R +E S + + L T P +++P++T
Sbjct: 223 KQRMLAEMQSAMNNMANNQ----LSTQCPPENIPTAT 255
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF +LSQ DQ+ L+K G FE+ + + L + +
Sbjct: 432 IWEDFSLSFTPAVREVVEFAKHIPGFQELSQHDQVSLLKAGTFEVLMVRFASLFNVKEQT 491
Query: 222 LTFSDGMYVTRQQLEVMY 239
+TF M T+ LE ++
Sbjct: 492 VTF---MSRTKYSLEELW 506
>gi|74138696|dbj|BAE27164.1| unnamed protein product [Mus musculus]
Length = 615
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 154 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 213
Query: 62 RERSDSE 68
++R +E
Sbjct: 214 KQRMLAE 220
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ + TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 436 IWEDLSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 495
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 496 VMFLSRTTYSLQELGAM 512
>gi|417403318|gb|JAA48470.1| Putative nuclear receptor [Desmodus rotundus]
Length = 612
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 152 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 211
Query: 62 RERSDSETGS 71
++R +E S
Sbjct: 212 KQRMLAEMQS 221
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 433 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 492
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 493 VMFLSRTTYSLQELSAM 509
>gi|395826494|ref|XP_003786453.1| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Otolemur
garnettii]
Length = 613
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 152 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 211
Query: 62 RERSDSE 68
++R +E
Sbjct: 212 KQRMLAE 218
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 434 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 493
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 494 VMFLSRTTYSLQELGAM 510
>gi|296202764|ref|XP_002806908.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 1 group
D member 1 [Callithrix jacchus]
Length = 612
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 153 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 212
Query: 62 RERSDSE 68
++R +E
Sbjct: 213 KQRMLAE 219
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 435 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 494
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 495 VMFLSRTTYSLQELGAM 511
>gi|5804932|emb|CAB53540.1| Rev-ErbAalpha protein [Homo sapiens]
Length = 614
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 153 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 212
Query: 62 RERSDSETGS 71
++R +E S
Sbjct: 213 KQRMLAEMQS 222
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 435 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 494
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 495 VMFLSRTTYSLQELGAM 511
>gi|14290448|gb|AAH08989.1| Nuclear receptor subfamily 1, group D, member 1 [Mus musculus]
Length = 615
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 154 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 213
Query: 62 RERSDSE 68
++R +E
Sbjct: 214 KQRMLAE 220
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 436 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 495
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 496 VMFLSRTTYSLQELGAM 512
>gi|402900086|ref|XP_003913011.1| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Papio
anubis]
Length = 613
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 152 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 211
Query: 62 RERSDSETGS 71
++R +E S
Sbjct: 212 KQRMLAEMQS 221
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 434 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 493
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 494 VMFLSRTTYSLQELGAM 510
>gi|110625908|ref|NP_663409.2| nuclear receptor subfamily 1 group D member 1 [Mus musculus]
gi|123797485|sp|Q3UV55.1|NR1D1_MOUSE RecName: Full=Nuclear receptor subfamily 1 group D member 1;
AltName: Full=Rev-erbA-alpha; AltName:
Full=V-erbA-related protein 1; Short=EAR-1
gi|74191988|dbj|BAE32932.1| unnamed protein product [Mus musculus]
gi|74210239|dbj|BAE23342.1| unnamed protein product [Mus musculus]
gi|74212726|dbj|BAE33339.1| unnamed protein product [Mus musculus]
gi|74215751|dbj|BAE23418.1| unnamed protein product [Mus musculus]
gi|148684219|gb|EDL16166.1| nuclear receptor subfamily 1, group D, member 1 [Mus musculus]
Length = 615
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 154 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 213
Query: 62 RERSDSE 68
++R +E
Sbjct: 214 KQRMLAE 220
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 436 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 495
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 496 VMFLSRTTYSLQELGAM 512
>gi|291405975|ref|XP_002719395.1| PREDICTED: nuclear receptor subfamily 1, group D, member 1
[Oryctolagus cuniculus]
Length = 616
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 154 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 213
Query: 62 RERSDSETGS 71
++R +E S
Sbjct: 214 KQRMLAEMQS 223
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 437 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 496
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 497 VMFLSRTTYSLQELGAM 513
>gi|355768148|gb|EHH62688.1| V-erbA-related protein 1 [Macaca fascicularis]
Length = 614
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 152 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 211
Query: 62 RERSDSETGS 71
++R +E S
Sbjct: 212 KQRMLAEMQS 221
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 435 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 494
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 495 VMFLSRTTYSLQELGAM 511
>gi|431890671|gb|ELK01550.1| Nuclear receptor subfamily 1 group D member 1 [Pteropus alecto]
Length = 615
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 154 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 213
Query: 62 RERSDSE 68
++R +E
Sbjct: 214 KQRMLAE 220
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 436 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 495
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 496 VMFLSRTTYSLQELGAM 512
>gi|148222727|ref|NP_001081595.1| thyroid hormone receptor alpha-A [Xenopus laevis]
gi|65142|emb|CAA35252.1| unnamed protein product [Xenopus laevis]
Length = 418
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 125/246 (50%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 82 KGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 141
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +R+R E + T P PSS E +++I
Sbjct: 142 KRKLIEENRQRRRKE---EMIKTLQQRPE------------PSSEE--------WELIRI 178
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
V++AH S N + + RR P ++ +AS + L + +F +
Sbjct: 179 VTEAHRSTNAQGSHWKQRR------KFLPEDIGQSPMASMPD--GDKVDLEAFSEFTKII 230
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L+ +DQ+IL+K E+ + R DS +LT S M V
Sbjct: 231 TPAITRVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEMAV 290
Query: 231 TRQQLE 236
R+QL+
Sbjct: 291 KREQLK 296
>gi|301779115|ref|XP_002924974.1| PREDICTED: nuclear receptor subfamily 1 group D member 1-like
[Ailuropoda melanoleuca]
Length = 613
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 59/71 (83%), Gaps = 1/71 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 152 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 211
Query: 62 RERSDSETGST 72
++R +E S
Sbjct: 212 KQRMLAEMQSA 222
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 434 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 493
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 494 VMFLSRTTYSLQELGAM 510
>gi|281344606|gb|EFB20190.1| hypothetical protein PANDA_014399 [Ailuropoda melanoleuca]
Length = 603
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 59/71 (83%), Gaps = 1/71 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 142 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 201
Query: 62 RERSDSETGST 72
++R +E S
Sbjct: 202 KQRMLAEMQSA 212
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 424 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 483
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 484 VMFLSRTTYSLQELGAM 500
>gi|440904253|gb|ELR54792.1| Nuclear receptor subfamily 1 group D member 1 [Bos grunniens mutus]
Length = 587
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 154 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 213
Query: 62 RERSDSE 68
++R +E
Sbjct: 214 KQRMLAE 220
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 408 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 467
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 468 VMFLSRTTYSLQELGAM 484
>gi|354496831|ref|XP_003510528.1| PREDICTED: nuclear receptor subfamily 1 group D member 1
[Cricetulus griseus]
Length = 615
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 154 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 213
Query: 62 RERSDSE 68
++R +E
Sbjct: 214 KQRMLAE 220
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 436 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 495
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 496 VMFLSRTTYSLQELGAM 512
>gi|269849736|sp|P15204.3|THAA_XENLA RecName: Full=Thyroid hormone receptor alpha-A; Short=TRalphaA;
Short=XenTR-alpha1; AltName: Full=Nuclear receptor
subfamily 1 group A member 1-A
gi|213623679|gb|AAI70071.1| Thyroid hormone receptor [Xenopus laevis]
gi|213623681|gb|AAI70077.1| Thyroid hormone receptor [Xenopus laevis]
Length = 418
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 125/246 (50%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 82 KGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 141
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +R+R E + T P PSS E +++I
Sbjct: 142 KRKLIEENRQRRRKE---EMIKTLQQRPE------------PSSEE--------WELIRI 178
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
V++AH S N + + RR P ++ +AS + L + +F +
Sbjct: 179 VTEAHRSTNAQGSHWKQRR------KFLPEDIGQSPMASMPD--GDKVDLEAFSEFTKII 230
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L+ +DQ+IL+K E+ + R DS +LT S M V
Sbjct: 231 TPAITRVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEMAV 290
Query: 231 TRQQLE 236
R+QL+
Sbjct: 291 KREQLK 296
>gi|160332191|sp|Q63503.2|NR1D1_RAT RecName: Full=Nuclear receptor subfamily 1 group D member 1;
AltName: Full=Rev-erbA-alpha; AltName:
Full=V-erbA-related protein 1; Short=EAR-1
gi|38303953|gb|AAH62047.1| Nr1d1 protein [Rattus norvegicus]
Length = 615
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 154 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 213
Query: 62 RERSDSE 68
++R +E
Sbjct: 214 KQRMLAE 220
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 436 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 495
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 496 VMFLSRTTYSLQELGAM 512
>gi|164663889|ref|NP_001106893.1| nuclear receptor subfamily 1 group D member 1 isoform 1 [Rattus
norvegicus]
Length = 615
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 154 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 213
Query: 62 RERSDSE 68
++R +E
Sbjct: 214 KQRMLAE 220
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 436 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 495
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 496 VMFLSRTTYSLQELGAM 512
>gi|149054137|gb|EDM05954.1| nuclear receptor subfamily 1, group D, member 1, isoform CRA_b
[Rattus norvegicus]
Length = 614
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 153 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 212
Query: 62 RERSDSE 68
++R +E
Sbjct: 213 KQRMLAE 219
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 435 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 494
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 495 VMFLSRTTYSLQELGAM 511
>gi|410980965|ref|XP_003996844.1| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Felis
catus]
Length = 611
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 59/71 (83%), Gaps = 1/71 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 151 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 210
Query: 62 RERSDSETGST 72
++R +E S
Sbjct: 211 KQRMLAEMQSA 221
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 432 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 491
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 492 VMFLSRTTYSLQELGAM 508
>gi|386368305|gb|AFJ06911.1| peroxisome proliferator-activated receptor gamma [Columba livia]
Length = 475
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 124/252 (49%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFRKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + C++ P + + EVA + ++Q+
Sbjct: 248 YDMNSLMMGEDQIKCKHVS--------------PLQEENKEVA-----------IRIFQR 282
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
+VQ + EFAK +PGF L +DQ+ L+K G E+ ++ LT + SDG
Sbjct: 283 CQFRSVEAVQEITEFAKNIPGFVSLDLNDQVTLLKYGVHEIIYTLLASLTNKDGVLISDG 342
Query: 228 M-YVTRQQLEVM 238
+VTR+ L+ +
Sbjct: 343 QGFVTREFLKSL 354
>gi|118151272|ref|NP_001071568.1| nuclear receptor subfamily 1 group D member 1 [Bos taurus]
gi|122132423|sp|Q08E02.1|NR1D1_BOVIN RecName: Full=Nuclear receptor subfamily 1 group D member 1;
AltName: Full=Rev-erbA-alpha; AltName:
Full=V-erbA-related protein 1; Short=EAR-1
gi|115305248|gb|AAI23489.1| Nuclear receptor subfamily 1, group D, member 1 [Bos taurus]
gi|296476380|tpg|DAA18495.1| TPA: nuclear receptor subfamily 1 group D member 1 [Bos taurus]
Length = 613
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 154 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 213
Query: 62 RERSDSE 68
++R +E
Sbjct: 214 KQRMLAE 220
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 434 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 493
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 494 VMFLSRTTYSLQELGAM 510
>gi|196259779|ref|NP_001124501.1| nuclear receptor subfamily 1 group D member 1 [Ovis aries]
gi|263504928|sp|B3SV56.1|NR1D1_SHEEP RecName: Full=Nuclear receptor subfamily 1 group D member 1;
AltName: Full=Rev-erbA-alpha; AltName:
Full=V-erbA-related protein 1; Short=EAR-1
gi|157399613|gb|ABV53446.1| rev-erb alpha [Ovis aries]
Length = 614
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 154 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 213
Query: 62 RERSDSE 68
++R +E
Sbjct: 214 KQRMLAE 220
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 435 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 494
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 495 VMFLSRTTYSLQELGAM 511
>gi|410925156|ref|XP_003976047.1| PREDICTED: retinoic acid receptor alpha-B-like [Takifugu rubripes]
Length = 478
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 115/236 (48%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQ CR +KCL VGMSR+ VR R+ K+
Sbjct: 118 KGFFRRSIQKNMVYTCHRDKVCVINKVTRNRCQSCRLQKCLDVGMSRELVRNDRMKKKKD 177
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E+ +E + +S DT+Q+ I V +AH
Sbjct: 178 EKKPAEVETYVLSA------------------------DTEQM-----IERVRRAHQD-- 206
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P S+++E S + LW +F+ T + + VEF
Sbjct: 207 ---------------TFPSLCQLGKYTTSNSSEHRVSLDVSLWDKFSELSTKCIIKTVEF 251
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AK++PGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ + R Q+
Sbjct: 252 AKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMH 307
>gi|345805420|ref|XP_003435298.1| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Canis
lupus familiaris]
Length = 612
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 151 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 210
Query: 62 RERSDSE 68
++R +E
Sbjct: 211 KQRMLAE 217
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 433 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 492
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 493 VMFLSRTTYSLQELGAM 509
>gi|348588919|ref|XP_003480212.1| PREDICTED: nuclear receptor subfamily 1 group D member 2-like
[Cavia porcellus]
Length = 580
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 87/147 (59%), Gaps = 22/147 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RERSDSETGSTRVSTTGAEPPSSL----------ETAGPVQS-LPSSTELDTKQLLTY-- 108
++R E S + ++ S L +TA P Q L +L+ + + ++
Sbjct: 184 KQRMLIEMQSAMKTMMNSQFSSHLQNDTLIDHQEQTALPAQEQLRPKPQLEQENIKSFPP 243
Query: 109 --------DVILAVSQAHHSNCEYTEE 127
+VI V++AH Y +E
Sbjct: 244 SASDFAKEEVIGMVTRAHKDTFMYNQE 270
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 402 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 461
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 462 VTFLSGKKYSVDDLHSM 478
>gi|344256924|gb|EGW13028.1| Nuclear receptor subfamily 1 group D member 1 [Cricetulus griseus]
Length = 508
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 59/71 (83%), Gaps = 1/71 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 47 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 106
Query: 62 RERSDSETGST 72
++R +E S
Sbjct: 107 KQRMLAEMQSA 117
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 329 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 388
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 389 VMFLSRTTYSLQELGAM 405
>gi|189514199|gb|ACE07029.1| thyroid hormone receptor beta [Xenopus (Silurana) tropicalis]
gi|302954166|gb|ADL74877.1| thyroid hormone receptor beta type 1 isoform b [Xenopus (Silurana)
tropicalis]
Length = 383
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 127/243 (52%), Gaps = 37/243 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+AVGM+ D V R+
Sbjct: 50 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLA 109
Query: 59 KRSR-ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQA 117
KR E + + + + + P P+ E +++I VS+A
Sbjct: 110 KRKLIEENREKRRKDEIQKSLVQKPE-----------PTQEE--------WELIQVVSEA 150
Query: 118 H-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPS 175
H +N + + + R+ + + + P V++PE E + QF +TP+
Sbjct: 151 HVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSQFTKIITPA 201
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQ 233
+ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 202 ITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRG 261
Query: 234 QLE 236
QL+
Sbjct: 262 QLK 264
>gi|302954142|gb|ADL74876.1| thyroid hormone receptor beta type 1 isoform a [Xenopus (Silurana)
tropicalis]
Length = 373
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 127/243 (52%), Gaps = 37/243 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+AVGM+ D V R+
Sbjct: 40 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLA 99
Query: 59 KRSR-ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQA 117
KR E + + + + + P P+ E +++I VS+A
Sbjct: 100 KRKLIEENREKRRKDEIQKSLVQKPE-----------PTQEE--------WELIQVVSEA 140
Query: 118 H-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPS 175
H +N + + + R+ + + + P V++PE E + QF +TP+
Sbjct: 141 HVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSQFTKIITPA 191
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQ 233
+ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 192 ITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRG 251
Query: 234 QLE 236
QL+
Sbjct: 252 QLK 254
>gi|514964|gb|AAA74939.1| Rev-erbA-alpha protein [Rattus norvegicus]
Length = 508
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 47 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 106
Query: 62 RERSDSE 68
++R +E
Sbjct: 107 KQRMLAE 113
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK++PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 329 IWEDFSMSFTPAVREVVEFAKQIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 388
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 389 VMFLSRTTYSLQELGAM 405
>gi|214830|gb|AAA49969.1| thyroid hormone receptor [Xenopus laevis]
Length = 418
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 125/246 (50%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 82 KGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDGKRVA 141
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +R+R E + T P PSS E +++I
Sbjct: 142 KRKLIEENRQRRRKE---EMIKTLQQRPE------------PSSEE--------WELIRI 178
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
V++AH S N + + RR P ++ +AS + L + +F +
Sbjct: 179 VTEAHRSTNAQGSHWKQRR------KFLPEDIGQSPMASMPD--GDKVDLEAFSEFTKII 230
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L+ +DQ+IL+K E+ + R DS +LT S M V
Sbjct: 231 TPAITRVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEMAV 290
Query: 231 TRQQLE 236
R+QL+
Sbjct: 291 KREQLK 296
>gi|395734078|ref|XP_002814054.2| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Pongo
abelii]
Length = 504
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 49 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 108
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 109 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLQPKPQLEQENIKSSS 167
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 326 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 385
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 386 VTFLSGKKYSVDDLHSM 402
>gi|164663891|ref|NP_665718.2| nuclear receptor subfamily 1 group D member 1 isoform 2 [Rattus
norvegicus]
gi|149054136|gb|EDM05953.1| nuclear receptor subfamily 1, group D, member 1, isoform CRA_a
[Rattus norvegicus]
Length = 508
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 47 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 106
Query: 62 RERSDSE 68
++R +E
Sbjct: 107 KQRMLAE 113
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 329 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 388
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 389 VMFLSRTTYSLQELGAM 405
>gi|449273802|gb|EMC83188.1| Nuclear receptor subfamily 1 group D member 2, partial [Columba
livia]
Length = 576
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 89/166 (53%), Gaps = 21/166 (12%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 125 KGFFRRSIQQNIQYKKCLKNNNCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 184
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
++R E S + ++ L P ++L E QA +
Sbjct: 185 KQRMLIEMQSAMKTMMNSQFSGHL----PNEALTEHQE----------------QAPQED 224
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
+ + ++ P LP ++++ EV H+ ++ +Q
Sbjct: 225 LSSKPKQEQETIKSPSPLPGTDMAKEEVIGMVTRAHKDTFMYNQEQ 270
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 398 VWEEFSLSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 457
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 458 VTFLSGKKYSVDDLHSM 474
>gi|417402806|gb|JAA48237.1| Putative nuclear receptor [Desmodus rotundus]
Length = 565
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 152 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 211
Query: 62 RERSDSE 68
++R +E
Sbjct: 212 KQRMLAE 218
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 433 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 492
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 493 VMFLSRTTYSLQELSAM 509
>gi|195592078|ref|XP_002085763.1| GD14944 [Drosophila simulans]
gi|194197772|gb|EDX11348.1| GD14944 [Drosophila simulans]
Length = 612
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/48 (93%), Positives = 47/48 (97%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRD 50
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCL+ GMSRD
Sbjct: 408 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMSRD 455
>gi|344288189|ref|XP_003415833.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 1 group
D member 2-like [Loxodonta africana]
Length = 581
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 127 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 186
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L D I + S
Sbjct: 187 KQRMLIEMQSAMKTMMNSQFSGHLQNDMLVEHHEQTALPAQEQLRPKPQLEQDHIKSSS 245
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 403 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 462
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 463 VTFLSGKKYSVDALHSM 479
>gi|355568630|gb|EHH24911.1| V-erbA-related protein 1 [Macaca mulatta]
Length = 668
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 175 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 234
Query: 62 RERSDSE 68
++R +E
Sbjct: 235 KQRMLAE 241
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 457 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 516
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 517 VMFLSRTTYSLQELGAM 533
>gi|348502485|ref|XP_003438798.1| PREDICTED: retinoic acid receptor alpha-A-like isoform 2
[Oreochromis niloticus]
Length = 447
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 116/240 (48%), Gaps = 56/240 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C R+ C++ ++ RNRCQYCR +KCL VGMS++SVR R K+
Sbjct: 101 KGFFRRSIQKNMVYTCHREKNCIINKVTRNRCQYCRLQKCLEVGMSKESVRNDRNKKKKD 160
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH--- 119
E+ T S +S DT+Q+ I V +AH
Sbjct: 161 EKKQECTESYVLSP------------------------DTEQM-----IDRVRKAHQDTF 191
Query: 120 -SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
S C+ + T + VSL + LW +F+ T + +
Sbjct: 192 PSLCQLGKYTTTNSSERRVSL---------------------DVDLWDKFSELSTKCIIK 230
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
VEFAK++PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 231 TVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRNQMH 290
>gi|351705192|gb|EHB08111.1| Nuclear receptor subfamily 1 group D member 2, partial
[Heterocephalus glaber]
Length = 574
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 76/115 (66%), Gaps = 6/115 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 119 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 178
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVI 111
++R E S + ++ S L+ ++ +LP+ +L K L + I
Sbjct: 179 KQRMLIEMQSAMKTMMNSQFSSHLQNDTLIEHHEQTALPAQEQLRPKPQLEQENI 233
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ +K G FE+ + + L + +
Sbjct: 397 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNNLKAGTFEVLMVRFASLFDAKERT 456
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 457 VTFLSGKKYSVDDLHSM 473
>gi|23504267|emb|CAA52153.2| retinoic acid receptor gamma 2 isoform [Gallus gallus]
Length = 425
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 110/240 (45%), Gaps = 57/240 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQ+CR +KC VGMS+++VR
Sbjct: 100 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQFCRLQKCFEVGMSKEAVR--------N 151
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH--- 119
+R+ + + E +LE ++I VS+AH
Sbjct: 152 DRNKKKKEVKEEAADSPELSPALE----------------------ELIQKVSRAHQETF 189
Query: 120 -SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
S C+ + + V L P LW +F+ T + +
Sbjct: 190 PSLCQLGKYTMSSSAQHRVQLDPG---------------------LWDKFSELATKCIIK 228
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQLE 236
+VEFAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 229 IVEFAKRLPGFTALSIADQITLLKAACLDILMLRICTRYTLEQDTMTFSDGLTLNRTQMH 288
>gi|431919409|gb|ELK17928.1| Nuclear receptor subfamily 1 group D member 2 [Pteropus alecto]
Length = 591
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 84/147 (57%), Gaps = 22/147 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 137 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 196
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTY-------- 108
++R E S + ++ L+ V+ SLP+ +L K L
Sbjct: 197 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTSLPAQEQLRPKPQLEQENVKSSSP 256
Query: 109 --------DVILAVSQAHHSNCEYTEE 127
+VI V++AH Y +E
Sbjct: 257 PSSDFAKEEVIGMVTRAHKDTFMYNQE 283
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 111 ILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAA 170
I SQ + N G R + P+S+ P + H+S +W++F+
Sbjct: 372 IDGFSQNENKNSYLCNNGGRMHLVCPMSMSP-----------YVDPHKSGH-EIWEEFSM 419
Query: 171 HVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGM 228
TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + ++TF G
Sbjct: 420 SFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERTVTFLSGK 479
Query: 229 YVTRQQLEVM 238
+ L M
Sbjct: 480 KYSVDDLHSM 489
>gi|78172881|gb|ABB29465.1| peroxisome proliferator-activated receptor beta [Sparus aurata]
Length = 506
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 122/253 (48%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+++ ++EY RC R C + + NRN+CQYCRF+KCL++GMS D++RYGR+P+
Sbjct: 160 KGFFRRTVRMKLEYDRCERS--CKIQKKNRNKCQYCRFQKCLSLGMSHDAIRYGRMPEAE 217
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
R++ V+ AE + P ++L T + V+ A+ N
Sbjct: 218 RKK--------LVAGLLAEEQN--------HGKPGGSDLKT-------LAKQVNTAYLKN 254
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF----------AAH 171
T++ R ++ + + +SP V +++ +W Q H
Sbjct: 255 LSMTKKRARSIL-----MGKTASTSPFVIYDVDTLWKAESGLVWSQLVPGAPLTKEIGVH 309
Query: 172 V--------TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
V +V+ + EFAK +PGF DL +DQ+ L+K G E + L L
Sbjct: 310 VFYRCQCTTVETVRELTEFAKCIPGFVDLFLNDQVTLLKYGVHEAIFAMLPSLMNKDGLL 369
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 370 VANGKGFVTREFL 382
>gi|302954190|gb|ADL74878.1| thyroid hormone receptor beta type 2 [Xenopus (Silurana)
tropicalis]
Length = 476
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 123/241 (51%), Gaps = 33/241 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+AVGM+ D V R+
Sbjct: 143 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLA 202
Query: 59 KRSR-ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQA 117
KR E + + + + + P P+ E + Q+++ + +Q
Sbjct: 203 KRKLIEENREKRRKDEIQKSLVQKPE-----------PTQEEWELIQVVSEAHVATNAQG 251
Query: 118 HHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
H + R+ + + + P V++PE E + QF +TP++
Sbjct: 252 SHW------KQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSQFTKIITPAIT 296
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQL 235
RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR QL
Sbjct: 297 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL 356
Query: 236 E 236
+
Sbjct: 357 K 357
>gi|444511395|gb|ELV09860.1| Nuclear receptor subfamily 1 group D member 2 [Tupaia chinensis]
Length = 570
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 89/171 (52%), Gaps = 29/171 (16%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 39 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 98
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVSQ 116
++R E S + ++ L+ V+ +LP+ +L K L + I
Sbjct: 99 KQRMLIEMQSAMKTMMNSQFNGHLQNDTLVEHHEQTALPAQEQLRPKPQLEQENI----- 153
Query: 117 AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
K PPS+ + EV H+ L+ +Q
Sbjct: 154 ------------------KSSPPPPSDFAKEEVIGMVTRAHKDTFLYNQEQ 186
>gi|78172868|gb|ABB29459.1| peroxisome proliferator-activated receptor beta [Dicentrarchus
labrax]
Length = 510
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 122/253 (48%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+++ ++EY RC R C + + NRN+CQYCRF+KCL++GMS D++RYGR+P+
Sbjct: 164 KGFFRRTVRMKLEYDRCERS--CKIQKKNRNKCQYCRFQKCLSLGMSHDAIRYGRMPEAE 221
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
R++ V+ AE + P ++L T + V+ A+ N
Sbjct: 222 RKK--------LVAGLLAEEQN--------HGKPGGSDLKT-------LAKQVNTAYLKN 258
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF----------AAH 171
T++ R ++ + + +SP V +++ +W Q H
Sbjct: 259 LSMTKKRARSIL-----MGKTASTSPFVIYDVDTLWKAESGLVWSQLVPGAPLTKEIGVH 313
Query: 172 V--------TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
V +V+ + EFAK +PGF DL +DQ+ L+K G E + L L
Sbjct: 314 VFYRCQCTTVETVRELTEFAKCIPGFVDLFLNDQVTLLKYGVHEAIFAMLPSLMNKDGLL 373
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 374 VANGKGFVTREFL 386
>gi|348502483|ref|XP_003438797.1| PREDICTED: retinoic acid receptor alpha-A-like isoform 1
[Oreochromis niloticus]
Length = 454
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 116/239 (48%), Gaps = 56/239 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C R+ C++ ++ RNRCQYCR +KCL VGMS++SVR R K+
Sbjct: 108 KGFFRRSIQKNMVYTCHREKNCIINKVTRNRCQYCRLQKCLEVGMSKESVRNDRNKKKKD 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH--- 119
E+ T S +S DT+Q+ I V +AH
Sbjct: 168 EKKQECTESYVLSP------------------------DTEQM-----IDRVRKAHQDTF 198
Query: 120 -SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
S C+ + T + VSL + LW +F+ T + +
Sbjct: 199 PSLCQLGKYTTTNSSERRVSL---------------------DVDLWDKFSELSTKCIIK 237
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
VEFAK++PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 238 TVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRNQM 296
>gi|219688698|dbj|BAH09862.1| thyroid hormone receptor alpha b [Solea senegalensis]
Length = 409
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 122/241 (50%), Gaps = 33/241 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 73 KGFFRRTIQKNLHPAYSCKYDCCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDESKRVA 132
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR R+ E E +Q+ P T + +++I V++AH
Sbjct: 133 KR------------RLIEQNREKRKKEEMVKTLQNRPEPTGAE------WELIRHVTEAH 174
Query: 119 -HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
H+N + + +R LP SP +S + L + +F +TP++
Sbjct: 175 RHTNAQGAQWKQKRKF-----LPDKIGQSPVTPTSDG---DKVDLEAFSEFTKIITPAIT 226
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQL 235
RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V R+QL
Sbjct: 227 RVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAIRYDPESETLTLSGEMAVKREQL 286
Query: 236 E 236
+
Sbjct: 287 K 287
>gi|432115889|gb|ELK37034.1| Nuclear receptor subfamily 1 group D member 2 [Myotis davidii]
Length = 501
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 83/145 (57%), Gaps = 20/145 (13%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 49 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 108
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ----SLPSSTELDTKQLLTY--------- 108
++R E S S ++ L+ V +LP+ +L K L
Sbjct: 109 KQRMLIEMQSAMKSMMNSQFSGHLQNDTLVDHEQTALPAQEQLRPKPQLEQESIKSSSPS 168
Query: 109 ------DVILAVSQAHHSNCEYTEE 127
+VI V++AH Y +E
Sbjct: 169 SDFAKEEVIGMVTRAHKDTFLYNQE 193
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 323 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 382
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 383 VTFLSGKKYSVDDLHSM 399
>gi|325930187|gb|ADZ45552.1| retinoid X receptor gamma [Taeniopygia guttata]
Length = 468
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 119/232 (51%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +RSR
Sbjct: 165 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRSR 222
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ERS++E ST ++G+E ++ +++L + LAV +
Sbjct: 223 ERSENEAEST---SSGSE------------------DMPVERILEAE--LAVEPKTEA-- 257
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y++ GT PV T CH + + Q F +VE+
Sbjct: 258 -YSDVGTESSTNDPV---------------TNICHAADK----QLFT---------LVEW 288
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 289 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 340
>gi|237690148|gb|ACR15760.1| peroxisome proliferator-activated receptor beta [Lateolabrax
japonicus]
Length = 510
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 122/253 (48%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+++ ++EY RC R C + + NRN+CQYCRF+KCL++GMS D++RYGR+P+
Sbjct: 164 KGFFRRTVRMKLEYDRCERS--CKIQKKNRNKCQYCRFQKCLSLGMSHDAIRYGRMPEAE 221
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
R++ V+ AE + S P ++L T + V+ A+ N
Sbjct: 222 RKK--------LVAGLLAEELN--------LSKPGGSDLKT-------LAKQVNTAYLKN 258
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF----------AAH 171
T++ R ++ S +SP V +++ +W Q H
Sbjct: 259 LSMTKKRARSILTGKTS-----STSPFVIYDVDTLWKAESGLVWSQLVPGAPLTKEIGVH 313
Query: 172 V--------TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
V +V+ + EFAK +PGF DL +DQ+ L+K G E + L L
Sbjct: 314 VFYRCQCTTVETVRELTEFAKCIPGFVDLFLNDQVTLLKYGVHEAIFAMLPSLMNKDGLL 373
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 374 VANGKGFVTREFL 386
>gi|371940918|ref|NP_001243138.1| retinoic acid receptor RXR-gamma [Taeniopygia guttata]
Length = 468
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 119/232 (51%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +RSR
Sbjct: 165 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRSR 222
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ERS++E ST ++G+E ++ +++L + LAV +
Sbjct: 223 ERSENEAEST---SSGSE------------------DMPVERILEAE--LAVEPKTEA-- 257
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y++ GT PV T CH + + Q F +VE+
Sbjct: 258 -YSDVGTESSTNDPV---------------TNICHAADK----QLFT---------LVEW 288
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 289 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 340
>gi|378925284|dbj|BAL63410.1| retinoic acid receptor alpha 1, partial [Solea senegalensis]
Length = 219
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 114/234 (48%), Gaps = 48/234 (20%)
Query: 4 GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRE 63
GFFRRSIQK + Y C R+ C++ ++ RNRCQYCR +KCL VGMS++SVR R K+ E
Sbjct: 1 GFFRRSIQKNMVYTCHREKNCIINKVTRNRCQYCRLQKCLDVGMSKESVRNDRNKKKKDE 60
Query: 64 RSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCE 123
+ T S +S DT+Q+ I V +AH
Sbjct: 61 KKQECTESYVLSP------------------------DTEQM-----IDKVRKAHKE--- 88
Query: 124 YTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFA 183
+ P S+++E S + LW +F+ T + + VEFA
Sbjct: 89 --------------TFPSLCQLGKYTTSNSSERRVSLDVDLWDKFSELSTKCIIKTVEFA 134
Query: 184 KRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
K++PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 135 KQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 188
>gi|348572976|ref|XP_003472268.1| PREDICTED: nuclear receptor ROR-beta-like [Cavia porcellus]
Length = 470
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 119/284 (41%), Gaps = 90/284 (31%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVR--------- 53
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMSRD+V+
Sbjct: 42 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 101
Query: 54 ---YGRVPKR----------------SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSL 94
Y V K + R S + S +S G+E S T G V L
Sbjct: 102 DSLYAEVQKHQQRLQEQRQQQSGDAEALARVYSTSISNGLSNLGSET-SGTYTNGHVIDL 160
Query: 95 PSST---ELDTKQ-----------------------------LLTYD------------- 109
P S +D+ Q L TY
Sbjct: 161 PKSEGYYSVDSGQPSPDQSGLDMTGIKQIKQEPIYDLSSVPNLFTYSSFNNGQLAPGITM 220
Query: 110 -----VILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWL 164
+ + ++H C+YT E +L + + E+ + + S A L
Sbjct: 221 SEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTY--EEIKAYQSKSREA---------L 269
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
WQQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+
Sbjct: 270 WQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEV 313
>gi|126308170|ref|XP_001370296.1| PREDICTED: nuclear receptor subfamily 1 group D member 1
[Monodelphis domestica]
Length = 622
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C +IR+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 160 KGFFRRSIQQNIQYKKCLKNESCSIIRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 219
Query: 62 RERSDSE 68
++R +E
Sbjct: 220 KQRMLAE 226
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
+W+ F+ TP+V+ VVEFAK +PGFCDLSQ DQ+ L+K G FE+ +
Sbjct: 443 IWEDFSMSFTPAVREVVEFAKHIPGFCDLSQHDQVTLLKAGTFEVLM 489
>gi|214832|gb|AAA49970.1| thyroid hormone receptor protein [Xenopus laevis]
Length = 418
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 123/241 (51%), Gaps = 33/241 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSR--DSVRYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D RV
Sbjct: 82 KGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLDLDDSKRVA 141
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR D RV E +L+ PSS E +++I V++AH
Sbjct: 142 KRKLIEED------RVRRRKEEMIKTLQQCPE----PSSEE--------WELIRIVTEAH 183
Query: 119 HS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
S N + + RR P ++ +AS + L + +F +TP++
Sbjct: 184 RSTNAQGSHWKQRR------KFLPEDIGQSPMASMPD--GDKVDLEAFSEFTKIITPAIT 235
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQL 235
RVV+FAK++P F +L+ +DQ+IL+K E+ + R DS +LT S M V R+QL
Sbjct: 236 RVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEMAVKREQL 295
Query: 236 E 236
+
Sbjct: 296 K 296
>gi|345323708|ref|XP_001509051.2| PREDICTED: nuclear receptor subfamily 1 group D member 2-like
[Ornithorhynchus anatinus]
Length = 699
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 237 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 296
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQL 105
++R E S + + S L+ V+ +T +QL
Sbjct: 297 KQRMLIEMQSAMKTMMNGQFNSHLQNDALVEHHEQATLTAQEQL 340
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 521 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 580
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 581 VTFLSGKKFSVDDLHSM 597
>gi|432957376|ref|XP_004085823.1| PREDICTED: nuclear receptor subfamily 1 group D member 2-like,
partial [Oryzias latipes]
Length = 528
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 66/99 (66%), Gaps = 10/99 (10%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL VGMSRDSVR+GR+PKR
Sbjct: 81 KGFFRRSIQQNIQYKKCLKNDSCPIMRVNRNRCQQCRFKKCLMVGMSRDSVRFGRIPKRE 140
Query: 62 RER--------SDSETGSTRVSTTGAEPPSSLETAGPVQ 92
++R D+ +R+ PP ET GP
Sbjct: 141 KQRMLLEMQSAMDNMMNDSRLQNQPQGPPLPPET-GPAH 178
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAK++PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 350 VWEEFSHCFTPAVREVVEFAKKIPGFRDLSQHDQVSLLKAGTFEVLVVRFASLFNVKDRT 409
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L+ M
Sbjct: 410 VTFLGGKKYRVETLKAM 426
>gi|157278151|ref|NP_001098175.1| thyroid hormone receptor alpha [Oryzias latipes]
gi|42794038|dbj|BAD11772.1| thyroid hormone receptor alpha [Oryzias latipes]
Length = 411
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 122/241 (50%), Gaps = 33/241 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+ VGM+ D V RV
Sbjct: 75 KGFFRRTIQKSLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIDVGMAMDLVLDDSKRVA 134
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR R+ E E +Q+ P T + +D+I V++AH
Sbjct: 135 KR------------RLIEENREKRKKEEMVKSLQTRPEPT------VDEWDLIRMVTEAH 176
Query: 119 -HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
++N + + +R LP SP +S + L + +F +TP++
Sbjct: 177 RNTNAQGAQWKQKRKF-----LPEKIGQSPVAPTSDG---DKVDLEAFSEFTKIITPAIT 228
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQL 235
RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V R+QL
Sbjct: 229 RVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAIRYDPESETLTLSGEMAVKREQL 288
Query: 236 E 236
+
Sbjct: 289 K 289
>gi|397511708|ref|XP_003826209.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Pan
paniscus]
Length = 504
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 49 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 108
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 109 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQLEQENIKSSS 167
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 326 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 385
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 386 VTFLSGKKYSVDDLHSM 402
>gi|224177493|ref|NP_001138897.1| nuclear receptor subfamily 1 group D member 2 isoform 2 [Homo
sapiens]
gi|426339690|ref|XP_004033776.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 isoform 2
[Gorilla gorilla gorilla]
gi|119584745|gb|EAW64341.1| nuclear receptor subfamily 1, group D, member 2, isoform CRA_b
[Homo sapiens]
gi|194377964|dbj|BAG63345.1| unnamed protein product [Homo sapiens]
gi|325495473|gb|ADZ17342.1| nuclear receptor Rev-ErbA beta variant 2 [Homo sapiens]
Length = 504
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 49 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 108
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 109 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQLEQENIKSSS 167
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 326 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 385
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 386 VTFLSGKKYSVDDLHSM 402
>gi|332816245|ref|XP_003309702.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 isoform 1
[Pan troglodytes]
Length = 504
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 49 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 108
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 109 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQLDQENIKSSS 167
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 326 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 385
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 386 VTFLSGKKYSVDDLHSM 402
>gi|295414060|gb|ADG08189.1| nuclear receptor subfamily 1 group D member 1 [Potorous
tridactylus]
Length = 621
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C +IR+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 159 KGFFRRSIQQNIQYKKCLKNESCSIIRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 218
Query: 62 RERSDSE 68
++R +E
Sbjct: 219 KQRMLAE 225
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
+W+ F+ TP+V+ VVEFAK +PGFCDLSQ DQ+ L+K G FE+ +
Sbjct: 442 IWEDFSMSFTPAVREVVEFAKHIPGFCDLSQHDQVTLLKAGTFEVLM 488
>gi|402861701|ref|XP_003895223.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 isoform 2
[Papio anubis]
Length = 504
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 49 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 108
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 109 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTTLPAQEQLRPKPQLEQENIKSSS 167
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 326 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 385
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 386 VTFLSGKKYSVDDLHSM 402
>gi|332215364|ref|XP_003256813.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Nomascus
leucogenys]
Length = 504
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 49 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 108
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 109 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQLEQENIKSSS 167
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 326 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 385
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 386 VTFLSGKKYSVDDLHSM 402
>gi|62087762|dbj|BAD92328.1| orphan nuclear receptor NR1D2 variant [Homo sapiens]
Length = 549
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 93 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 152
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 153 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQLEQENIKSSS 211
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 371 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 430
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 431 VTFLSGKKYSVDDLHSM 447
>gi|363743762|ref|XP_003642912.1| PREDICTED: nuclear receptor ROR-beta-like [Gallus gallus]
Length = 540
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 120/290 (41%), Gaps = 94/290 (32%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMS-------------R 49
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMS R
Sbjct: 106 KGFFRRSQQNNASYSCSRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 165
Query: 50 DSVRYGRVPKRSRER------SDSETGSTRVSTT-------------------------- 77
DS+ Y V K + + D +R+ TT
Sbjct: 166 DSL-YAEVQKHQQRQEQSGGPKDEPEPLSRIYTTSVSSGLSDLDDISTLSDGLLFDFPLT 224
Query: 78 --GAEPPSSLETAGPVQSLPSSTELDT------KQLLTYDVILA---------------- 113
G+ +L+ Q P + LD KQ Y+++L
Sbjct: 225 PDGSSSYYNLDLLASAQPSPDQSSLDVADATLIKQESIYELMLEPALFAHGALEGSQLAG 284
Query: 114 -------------VSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ 160
V ++H C+YT E + L S P EV + + S A
Sbjct: 285 DISVLEIDRIAQNVVKSHLETCQYTAEELKHLAWSLYS--PEEVRALQSKSCEA------ 336
Query: 161 RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
+WQQ + H++ ++Q VVEFAKR+ GF +L Q+DQ+IL+K G E+ +
Sbjct: 337 ---MWQQCSLHISNAIQYVVEFAKRIDGFMELCQNDQIILLKAGCLEVLL 383
>gi|50882282|gb|AAT85616.1| peroxisome proliferator-activated receptor beta [Dicentrarchus
labrax]
Length = 510
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 122/253 (48%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+++ ++EY RC R C + + +RN+CQYCRF+KCL++GMS D++RYGR+P+
Sbjct: 164 KGFFRRTVRMKLEYDRCERS--CKIQKKDRNKCQYCRFQKCLSLGMSHDAIRYGRMPEAE 221
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
R+R V+ AE + P ++L T + V+ A+ N
Sbjct: 222 RKR--------LVAGLLAEEQN--------HGKPGGSDLKT-------LAKQVNTAYLKN 258
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF----------AAH 171
T++ R ++ + + +SP V +++ +W Q H
Sbjct: 259 LSMTKKRARSIL-----MGKTSSTSPFVIYDVDTLWKAESGLVWSQLVPGAPLTKEIGVH 313
Query: 172 V--------TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
V +V+ + EFAK +PGF DL +DQ+ L+K G E + L L
Sbjct: 314 VFYRCQCTTVETVRELTEFAKCIPGFVDLFLNDQVTLLKYGVHEAIFAMLPSLMNKDGLL 373
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 374 VANGKGFVTREFL 386
>gi|426339688|ref|XP_004033775.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 isoform 1
[Gorilla gorilla gorilla]
Length = 579
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 184 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQLEQENIKSSS 242
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 401 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 460
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 461 VTFLSGKKYSVDDLHSM 477
>gi|60829127|gb|AAX36866.1| nuclear receptor subfamily 1 group D member 2 [synthetic construct]
gi|61368627|gb|AAX43212.1| nuclear receptor subfamily 1 group D member 2 [synthetic construct]
Length = 580
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 184 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQLEQENIKSSS 242
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 401 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 460
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 461 VTFLSGKKYSVDDLHSM 477
>gi|215274122|sp|Q14995.3|NR1D2_HUMAN RecName: Full=Nuclear receptor subfamily 1 group D member 2;
AltName: Full=Orphan nuclear hormone receptor BD73;
AltName: Full=Rev-erb-beta; AltName: Full=V-erbA-related
protein 1-related; Short=EAR-1R
Length = 579
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 184 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQLEQENIKSSS 242
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 401 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 460
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 461 VTFLSGKKYSVDDLHSM 477
>gi|48146985|emb|CAG33715.1| NR1D2 [Homo sapiens]
Length = 579
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 184 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQLEQENIKSSS 242
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 401 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 460
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 461 VTFLSGKKYSVDDLHSM 477
>gi|224177491|ref|NP_005117.3| nuclear receptor subfamily 1 group D member 2 isoform 1 [Homo
sapiens]
gi|2116672|dbj|BAA20088.1| EAR-1r [Homo sapiens]
gi|168278146|dbj|BAG11051.1| orphan nuclear receptor NR1D2 [synthetic construct]
gi|189066703|dbj|BAG36250.1| unnamed protein product [Homo sapiens]
gi|325495471|gb|ADZ17341.1| nuclear receptor Rev-ErbA beta variant 1 [Homo sapiens]
Length = 579
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 184 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQLEQENIKSSS 242
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 401 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 460
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 461 VTFLSGKKYSVDDLHSM 477
>gi|157679166|dbj|BAF80458.1| peroxisome proliferator-activated receptor beta [Pagrus major]
Length = 399
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 121/253 (47%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+++ ++EY RC R C + + NRN+CQYCRF+KCL++GMS D++RYGR+P+
Sbjct: 69 KGFFRRTVRMKLEYDRCERS--CKIQKKNRNKCQYCRFQKCLSLGMSHDAIRYGRMPEAE 126
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
R++ V+ AE L P S D K L V+ A+ N
Sbjct: 127 RKK--------LVAGLLAE---ELNVGKPGGS-------DLKTLAK-----QVNTAYLKN 163
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF----------AAH 171
T++ R ++ + + +SP V +++ +W Q H
Sbjct: 164 LSMTKKRARSIL-----MGKTSSTSPFVIYDVDTLWKAESGLVWSQLVPGAPLTKEIGVH 218
Query: 172 V--------TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
V +V+ + EFAK +PGF DL +DQ+ L+K G E + L L
Sbjct: 219 VFYRCQCTTVETVRELTEFAKCIPGFVDLFLNDQVTLLKYGVHEAIFAMLPSLMNKDGLL 278
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 279 VANGKGFVTREFL 291
>gi|417411933|gb|JAA52385.1| Putative nuclear receptor subfamily protein 1 group d member 2
isoform 1, partial [Desmodus rotundus]
Length = 612
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 77/118 (65%), Gaps = 5/118 (4%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 159 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 218
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 219 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHEQTALPAQEQLRPKPQLEQENIKSSS 276
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 434 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 493
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 494 VTFLSGKKYSVDDLHSM 510
>gi|216409694|dbj|BAH02284.1| nuclear receptor subfamily 1, group D, member 2 [Homo sapiens]
Length = 579
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 184 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQLEQENIKSSS 242
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 401 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 460
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 461 VTFLSGKKYSVDDLHSM 477
>gi|28279409|gb|AAH45613.1| Nuclear receptor subfamily 1, group D, member 2 [Homo sapiens]
Length = 579
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 184 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQLEQENIKSSS 242
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 401 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 460
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 461 VTFLSGKKYSVDDLHSM 477
>gi|114585699|ref|XP_516330.2| PREDICTED: nuclear receptor subfamily 1 group D member 2 isoform 2
[Pan troglodytes]
gi|410213864|gb|JAA04151.1| nuclear receptor subfamily 1, group D, member 2 [Pan troglodytes]
gi|410255500|gb|JAA15717.1| nuclear receptor subfamily 1, group D, member 2 [Pan troglodytes]
gi|410293036|gb|JAA25118.1| nuclear receptor subfamily 1, group D, member 2 [Pan troglodytes]
gi|410355045|gb|JAA44126.1| nuclear receptor subfamily 1, group D, member 2 [Pan troglodytes]
Length = 579
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 184 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQLDQENIKSSS 242
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 401 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 460
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 461 VTFLSGKKYSVDDLHSM 477
>gi|348534188|ref|XP_003454585.1| PREDICTED: peroxisome proliferator-activated receptor gamma-like
isoform 2 [Oreochromis niloticus]
Length = 524
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 21/252 (8%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y C D C + + +RN+CQYCRF+KCL VGMS +++R+GR+P+
Sbjct: 153 KGFFRRTIRLKLVYDHC--DLHCRIHKKSRNKCQYCRFQKCLNVGMSHNAIRFGRMPQAE 210
Query: 62 RER------SDSETGSTRVSTTGAEPPSSLE--------TAGPVQSLPSSTELDTKQLLT 107
+E+ SD E + A E T +++ S D +
Sbjct: 211 KEKLLAEFSSDMEHMHPEAADLRALARHLYEAYLKYFPLTKAKARAILSGKTGDNVPFVI 270
Query: 108 YDVILAVSQAHHSNCEY--TEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLW 165
+D+ + NC+ E ++ + +LPP E ++ L +
Sbjct: 271 HDMKSLMEGEQFINCKQIPVPEHHQQQQHQTSTLPPVHGGGMTGFGGHGEA-DAVELRFF 329
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFS 225
Q + +V+ V EFAK +PGF DL +DQ+ L+K G E+ I +S L S
Sbjct: 330 QSCQSRSAEAVREVTEFAKSIPGFVDLDLNDQVTLLKYGVIEVLIIMMSPLMNKDGTLIS 389
Query: 226 DG-MYVTRQQLE 236
G +++TR+ L+
Sbjct: 390 YGQIFMTREFLK 401
>gi|338715053|ref|XP_001492528.3| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Equus
caballus]
Length = 503
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 84/147 (57%), Gaps = 22/147 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 49 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 108
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLL---------- 106
++R E S + ++ L+ V+ +LP+ +L K L
Sbjct: 109 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQLEPENIKSSSP 168
Query: 107 ------TYDVILAVSQAHHSNCEYTEE 127
+VI V++AH Y +E
Sbjct: 169 PSSDFAKEEVIGMVTRAHKDTFMYNQE 195
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 325 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 384
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 385 VTFLSGKKYSVDDLHSM 401
>gi|45383934|ref|NP_990536.1| nuclear receptor subfamily 1 group D member 2 [Gallus gallus]
gi|1429379|emb|CAA56551.1| REV-ERBb [Gallus gallus]
Length = 549
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 99 KGFFRRSIQQNIQYKKCLKNNNCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 158
Query: 62 RER 64
++R
Sbjct: 159 KQR 161
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 371 VWEEFSLSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDARERT 430
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 431 VTFLSGKKYSVDDLHSM 447
>gi|119584744|gb|EAW64340.1| nuclear receptor subfamily 1, group D, member 2, isoform CRA_a
[Homo sapiens]
Length = 333
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 49 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 108
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 109 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQLEQENIKSSS 167
>gi|471081|gb|AAA65937.1| orphan nuclear hormone receptor BD73, partial [Homo sapiens]
Length = 579
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 123 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 182
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 183 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQLEQENIKSSS 241
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 400 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 459
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 460 VTFLSGKKYSVDDLHSM 476
>gi|395816616|ref|XP_003781794.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 isoform 2
[Otolemur garnettii]
Length = 502
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 83/146 (56%), Gaps = 21/146 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 49 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 108
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTK------------- 103
++R E S + ++ L+ V+ +LP+ +L K
Sbjct: 109 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQMEQENIKSSPP 168
Query: 104 --QLLTYDVILAVSQAHHSNCEYTEE 127
+VI V++AH Y +E
Sbjct: 169 SSDFAKEEVIGMVTRAHKDTFMYNQE 194
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 324 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 383
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 384 VTFLSGKKYSVDDLHSM 400
>gi|380788235|gb|AFE65993.1| nuclear receptor subfamily 1 group D member 2 isoform 1 [Macaca
mulatta]
gi|383409825|gb|AFH28126.1| nuclear receptor subfamily 1 group D member 2 isoform 1 [Macaca
mulatta]
Length = 579
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 184 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQDQLRPKPQLEQENIKSSS 242
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 401 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 460
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 461 VTFLSGKKYSVDDLHSM 477
>gi|45384158|ref|NP_990424.1| nuclear receptor ROR-beta [Gallus gallus]
gi|1619285|emb|CAA69928.1| nuclear orphan receptor ROR-beta [Gallus gallus]
Length = 459
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 116/283 (40%), Gaps = 88/283 (31%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVR--------- 53
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMSRD+V+
Sbjct: 31 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 90
Query: 54 ---YGRVPKR------------------SRERSDS----------ETGSTRVSTTGAEPP 82
Y V K +R S+S ETGST + + P
Sbjct: 91 DSLYAEVQKHQQRLQEQRQQQSGEAEALARVYSNSISNGLGNLNNETGSTYSNGHVIDLP 150
Query: 83 SS--LETAGPVQSLPSSTELD------TKQLLTYD------------------------- 109
S Q P + LD KQ YD
Sbjct: 151 KSEGYYNVDSAQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGISMT 210
Query: 110 ----VILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLW 165
+ + ++H C+YT E +L + + +V + R LW
Sbjct: 211 EIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKVYQSKT-----------REALW 259
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
QQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+
Sbjct: 260 QQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEV 302
>gi|51556245|ref|NP_991292.1| nuclear receptor subfamily 1 group D member 1 [Danio rerio]
gi|37362256|gb|AAQ91256.1| nuclear receptor subfamily 1, group D, member 1 [Danio rerio]
Length = 637
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 149 KGFFRRSIQQNIQYKKCLKNETCTIMRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 208
Query: 62 RERSDSE 68
++R +E
Sbjct: 209 KQRMLAE 215
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF LSQ+DQ+ L+K G FE+ + S L + +
Sbjct: 459 IWEDFSLSFTPAVREVVEFAKHIPGFSTLSQNDQVTLLKAGTFEVLMVRFSSLFNVKEKT 518
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + + L+ M
Sbjct: 519 VTFISGATYSLEALKSM 535
>gi|291399718|ref|XP_002716247.1| PREDICTED: nuclear receptor subfamily 1, group D, member 2
[Oryctolagus cuniculus]
Length = 606
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 85/147 (57%), Gaps = 22/147 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C V+R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 152 KGFFRRSIQQNIQYKKCLKNENCSVMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 211
Query: 62 RERSDSETGSTRVSTTGAEPPSSL----------ETAGPVQS-LPSSTELDTKQLLTY-- 108
++R E S + ++ L +TA PVQ L +L+ + L
Sbjct: 212 KQRMLIEMQSAMKTMMNSQFSGQLQNDTLVEHREQTALPVQEQLRPKPQLEQENLKNSPP 271
Query: 109 --------DVILAVSQAHHSNCEYTEE 127
+VI V++AH Y +E
Sbjct: 272 PPSDFAKEEVIGMVTRAHKDTFMYNQE 298
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 428 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 487
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 488 VTFLSGKKYSVDDLHSM 504
>gi|395532574|ref|XP_003768345.1| PREDICTED: nuclear receptor subfamily 1 group D member 1
[Sarcophilus harrisii]
Length = 598
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C +IR+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 155 KGFFRRSIQQNIQYKKCLKNESCSIIRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 214
Query: 62 RERSDSE 68
++R +E
Sbjct: 215 KQRMLAE 221
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
+W+ F+ TP+V+ VVEFAK +PGFCDLSQ DQ+ L+K G FE+ +
Sbjct: 438 IWEDFSMSFTPAVREVVEFAKHIPGFCDLSQHDQVTLLKAGTFEVLM 484
>gi|224088946|ref|XP_002190992.1| PREDICTED: nuclear receptor ROR-beta [Taeniopygia guttata]
Length = 458
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 116/283 (40%), Gaps = 88/283 (31%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVR--------- 53
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMSRD+V+
Sbjct: 31 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 90
Query: 54 ---YGRVPKR------------------SRERSDS----------ETGSTRVSTTGAEPP 82
Y V K +R S+S ETGST + + P
Sbjct: 91 DSLYAEVQKHQQRLQEQRQQQNGEAEALTRVYSNSISNGLNNLNNETGSTYSNGHVIDLP 150
Query: 83 SS--LETAGPVQSLPSSTELD------TKQLLTYD------------------------- 109
S Q P + LD KQ YD
Sbjct: 151 KSEGYYNVDSAQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGISMS 210
Query: 110 ----VILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLW 165
+ + ++H C+YT E +L + + +V + R LW
Sbjct: 211 EIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKVYQSKT-----------REALW 259
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
QQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+
Sbjct: 260 QQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEV 302
>gi|402861699|ref|XP_003895222.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 isoform 1
[Papio anubis]
Length = 579
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 184 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTTLPAQEQLRPKPQLEQENIKSSS 242
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 401 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 460
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 461 VTFLSGKKYSVDDLHSM 477
>gi|355560069|gb|EHH16797.1| hypothetical protein EGK_12145, partial [Macaca mulatta]
gi|355747100|gb|EHH51714.1| hypothetical protein EGM_11146, partial [Macaca fascicularis]
Length = 574
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 119 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 178
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 179 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQDQLRPKPQLEQENIKSSS 237
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 396 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 455
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 456 VTFLSGKKYSVDDLHSM 472
>gi|229619548|dbj|BAH58104.1| peroxisome proliferator-activated receptor beta [Oryzias latipes]
Length = 506
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 121/253 (47%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+++ ++EY RC R C + + NRN+CQYCRF+KCL++GMS D++RYGR+P+
Sbjct: 160 KGFFRRTVRMKLEYERCERS--CKIQKKNRNKCQYCRFQKCLSLGMSHDAIRYGRMPEAE 217
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
R++ V+ AE + S P ++L T + V+ A+ N
Sbjct: 218 RKK--------LVAGLLAEEMN--------LSKPGGSDLKT-------LAKQVNTAYQKN 254
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF----------AAH 171
T++ R ++ S +SP V +++ +W Q H
Sbjct: 255 LSMTKKKARSILTGKTS-----STSPFVIYDVETLWKAESGLVWSQLVPGAPLTKEIGVH 309
Query: 172 V--------TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
V +V+ + EFAK +PGF DL +DQ+ L+K G + L L
Sbjct: 310 VFYRCQCTTVETVRELTEFAKCIPGFVDLYLNDQVTLLKYGVHGAIFAMLPSLMNKDGLL 369
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 370 VANGKGFVTREFL 382
>gi|403290000|ref|XP_003936122.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Saimiri
boliviensis boliviensis]
Length = 586
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 131 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 190
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 191 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQLEQENIKSSS 249
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 408 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 467
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 468 VTFLSGKKYSVDDLHSM 484
>gi|395816614|ref|XP_003781793.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 isoform 1
[Otolemur garnettii]
Length = 577
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 83/146 (56%), Gaps = 21/146 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTK------------- 103
++R E S + ++ L+ V+ +LP+ +L K
Sbjct: 184 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQMEQENIKSSPP 243
Query: 104 --QLLTYDVILAVSQAHHSNCEYTEE 127
+VI V++AH Y +E
Sbjct: 244 SSDFAKEEVIGMVTRAHKDTFMYNQE 269
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 399 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 458
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 459 VTFLSGKKYSVDDLHSM 475
>gi|148224951|ref|NP_001091097.1| peroxisome proliferators-activated receptor beta [Takifugu
rubripes]
gi|138997030|dbj|BAF52669.1| peroxisome proliferators-activated receptor beta [Takifugu
rubripes]
Length = 491
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 124/253 (49%), Gaps = 51/253 (20%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+++ ++EY RC R C + + NRN+CQYCRF+KCL++GMS D++RYGR+P+
Sbjct: 146 KGFFRRTVRMKLEYDRCTRS--CKIQKKNRNKCQYCRFQKCLSLGMSHDAIRYGRMPEAK 203
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
R++ V+ AE E G P ++L + + V+ A+ N
Sbjct: 204 RKK--------LVAGLLAE-----ENVGK----PGCSDLKS-------LAKQVNSAYLKN 239
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVA--SSTAECHESQRLW--------LWQQFAAH 171
T++ R ++ S +SP V T ES +W L ++ H
Sbjct: 240 LSMTKKRARSILAGKTS-----STSPFVIYDVDTLWKAESGLVWSRLLPDAPLTKEIGVH 294
Query: 172 V--------TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
V +V+ + EFAK +PGF DL +DQ+ L+K G E + L L
Sbjct: 295 VFYRCQCTTVETVRELTEFAKCIPGFVDLFLNDQVTLLKYGVHEAIFAMLPSLMNKDGLL 354
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 355 VANGKGFVTREFL 367
>gi|326672370|ref|XP_001921013.3| PREDICTED: thyroid hormone receptor alpha [Danio rerio]
Length = 410
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 123/242 (50%), Gaps = 34/242 (14%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 73 KGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 132
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR R+ E E +Q+ P T + +++I V++AH
Sbjct: 133 KR------------RLIEENREKRKKEEMVKTLQNRPEPTSSE------WELIRVVTEAH 174
Query: 119 -HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
H+N + + +R LP SP +S + L + +F +TP++
Sbjct: 175 RHTNAQGSHWKQKRKF-----LPEDIGQSPVAPTSDG---DKVDLEAFSEFTKIITPAIT 226
Query: 178 RVVEFAKRVPGFCD-LSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQ 234
RVV+FAK++P F + L +DQ+IL+K E+ + R +S +LT S M V R+Q
Sbjct: 227 RVVDFAKKLPMFSEQLPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQ 286
Query: 235 LE 236
L+
Sbjct: 287 LK 288
>gi|297287011|ref|XP_001089921.2| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Macaca
mulatta]
Length = 582
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 184 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQDQLRPKPQLEQENIKSSS 242
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 401 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 460
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 461 VTFLSGKKYSVDDLHSM 477
>gi|209168776|gb|ACI42381.1| peroxisome proliferator-activated receptor alpha [Lateolabrax
japonicus]
Length = 469
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 120/252 (47%), Gaps = 42/252 (16%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R +C + + NRN+CQYCRF+KCL+VGMS +++R+GR+P+
Sbjct: 124 KGFFRRTIRLKLEYDKCER--RCKIQKKNRNKCQYCRFQKCLSVGMSHNAIRFGRMPQSE 181
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVIL-AVSQAHHS 120
+ + +E TG E++ QL + + +A+
Sbjct: 182 KLKLKAEM------VTG------------------DREVEDPQLADQKTLARQIYEAYLK 217
Query: 121 NCEYTEEGTRRLVRKPVSLPPSEVSSPE-------------VASSTAECHESQRLWLWQQ 167
N + R ++ S PP + E V S+TA + ++
Sbjct: 218 NFNMNKAKARTILTGKTSTPPFVIHDMETLQLAEQTLVAKMVGSATALKDREAEVRIFHC 277
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSD 226
+V + EFAK VPGF +L +DQ+ L+K G +E L+ S + D L
Sbjct: 278 CQCTSVETVTELTEFAKSVPGFSNLDLNDQVTLLKYGVYEALFAMLASSMNKDGLLVAYG 337
Query: 227 GMYVTRQQLEVM 238
++TR+ L+ +
Sbjct: 338 SGFITREFLKSL 349
>gi|449492745|ref|XP_002194827.2| PREDICTED: nuclear receptor subfamily 1 group D member 2
[Taeniopygia guttata]
Length = 477
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 26 KGFFRRSIQQNIQYKKCLKNNSCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 85
Query: 62 RER 64
++R
Sbjct: 86 KQR 88
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 299 IWEEFSLSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 358
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 359 VTFLSGKKYSVDDLHSM 375
>gi|50080134|dbj|BAD27473.1| thyroid hormone receptor alpha A [Conger myriaster]
Length = 416
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 122/239 (51%), Gaps = 29/239 (12%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D V + +
Sbjct: 80 KGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLV----LDDK 135
Query: 61 SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH-H 119
R R E +L+ + PS +E +++I V++AH H
Sbjct: 136 KRVEKRRLIEENRERRRKEEMVKTLQN----RPEPSGSE--------WELIHLVTEAHRH 183
Query: 120 SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRV 179
+N + + +R LP SP +S + L + +F +TP++ RV
Sbjct: 184 TNAQGSHWKQKRKF-----LPEDIGQSPVAPTSDG---DKVDLEAFSEFTKIITPAITRV 235
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQLE 236
V+FAK++P F +L +DQ+IL+K E+ + R DS +LT S M V R+QL+
Sbjct: 236 VDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEMAVKREQLK 294
>gi|134270869|gb|ABO69007.1| peroxisome proliferator-activated receptor beta [Dentex dentex]
Length = 506
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 121/253 (47%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+++ ++EY RC R C + + NRN+CQYCRF+KCL++GMS D++RYGR+P+
Sbjct: 160 KGFFRRTVRMKLEYDRCERS--CKIQKKNRNKCQYCRFQKCLSLGMSHDAIRYGRMPEAE 217
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
R++ V+ AE L P S D K L V+ A+ N
Sbjct: 218 RKK--------LVAGLLAE---ELNVGKPGGS-------DLKTLAK-----QVNTAYLKN 254
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF----------AAH 171
T++ R ++ + + +SP V +++ +W Q H
Sbjct: 255 LSMTKKRARSIL-----MGKTSSTSPFVIYDVDTLWKAESGLVWSQLVPGAPLTKEIGVH 309
Query: 172 V--------TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
V +V+ + EFAK +PGF DL +DQ+ L+K G E + L L
Sbjct: 310 VFYRCQCTTVETVRELTEFAKCIPGFVDLFLNDQVTLLKYGVHEAIFAMLPSLMNKDGLL 369
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 370 VANGKGFVTREFL 382
>gi|126341712|ref|XP_001380756.1| PREDICTED: nuclear receptor subfamily 1 group D member 2
[Monodelphis domestica]
Length = 575
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 118 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 177
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQL 105
++R E S + ++ L++ V+ +T +QL
Sbjct: 178 KQRMLMEMQSAMKTMMNSQFSGHLQSEALVERHGQTTSPTQEQL 221
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 397 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 456
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G L M
Sbjct: 457 VTFLSGKKYNMDDLRSM 473
>gi|330368231|gb|AEC11554.1| dominant positive thyroid hormone receptor [Xenopus transgenesis
plasmid pDRTREdpTR-HS4]
Length = 873
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 124/246 (50%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 182 KGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDGKRVA 241
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +R+R E + T P PSS E +++I
Sbjct: 242 KRKLIEENRQRRRKE---EMIKTLQQRP------------EPSSEE--------WELIRI 278
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
V++AH S N + + RR LP SP + + L + +F +
Sbjct: 279 VTEAHRSTNAQGSHWKQRRKF-----LPEDIGQSPMASMPDG---DKVDLEAFSEFTKII 330
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L+ +DQ+IL+K E+ + R DS +LT S M V
Sbjct: 331 TPAITRVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEMAV 390
Query: 231 TRQQLE 236
R+QL+
Sbjct: 391 KREQLK 396
>gi|47124048|gb|AAH70035.1| NR1D2 protein [Homo sapiens]
Length = 408
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 184 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQLEQENIKSSS 242
>gi|296228212|ref|XP_002759745.1| PREDICTED: nuclear receptor subfamily 1 group D member 2
[Callithrix jacchus]
Length = 584
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 129 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 188
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ ++ +LP+ +L K L + I + S
Sbjct: 189 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLIEHHEQTALPAQEQLRPKPQLEQENIKSSS 247
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 406 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 465
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 466 VTFLSGKKYSVDDLHSM 482
>gi|324505790|gb|ADY42483.1| Nuclear hormone receptor E75 [Ascaris suum]
Length = 523
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 97/206 (47%), Gaps = 45/206 (21%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C + +C + R NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 115 KGFFRRSIQQKIQYRPCTKSQQCAIARNNRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 174
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R E + + LE G V L D A + AH N
Sbjct: 175 KARLVEEMARASARSLIDALVAELEDEGAV-------------LEACDAAFA-TLAHTVN 220
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVE 181
+ +R P+ ++ P+++ VVE
Sbjct: 221 TYASGNNYTTDIRCPLR------------------------------SSGYLPTLKAVVE 250
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE 207
F+ +PGF + Q D++ L+K F+
Sbjct: 251 FSTSIPGFHLIFQQDRVQLLKGSVFQ 276
>gi|85682815|gb|ABC73395.1| peroxisome proliferator-activated receptor beta [Rachycentron
canadum]
Length = 510
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 121/253 (47%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+++ ++EY RC R C + + NRN+CQYCRF+KCL++GMS D++RYGR+P+
Sbjct: 164 KGFFRRTVRMKLEYERCERS--CKIQKKNRNKCQYCRFQKCLSLGMSHDAIRYGRMPEAE 221
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
R++ V+ AE + P ++L T + V+ A+ N
Sbjct: 222 RKK--------LVAGLLAEELN--------LGKPGGSDLKT-------LAKQVNTAYLKN 258
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF----------AAH 171
T++ R ++ S +SP V +++ +W Q H
Sbjct: 259 LSMTKKRARSILTGKTS-----STSPFVIYDVDTLWKAESGLVWSQLLPGAPLTKEIGVH 313
Query: 172 V--------TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
V +V+ + EFAK +PGF DL +DQ+ L+K G E + L L
Sbjct: 314 VFYRCQCTTVETVRELTEFAKCIPGFVDLFLNDQVTLLKYGVHEAIFAMLPSLMNKDGLL 373
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 374 VANGKGFVTREFL 386
>gi|410911348|ref|XP_003969152.1| PREDICTED: nuclear receptor subfamily 1 group D member 2-like
[Takifugu rubripes]
Length = 573
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 55/63 (87%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL VGMSRDSVR+GR+PKR
Sbjct: 113 KGFFRRSIQQNIQYKKCLKNESCPIMRINRNRCQQCRFKKCLMVGMSRDSVRFGRIPKRE 172
Query: 62 RER 64
++R
Sbjct: 173 KQR 175
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAK++PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 395 VWEEFSHSFTPAVREVVEFAKKIPGFRDLSQHDQVSLLKAGTFEVLVVRFASLFDVKNRT 454
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + + L M
Sbjct: 455 VTFLGGKKYSLEALRAM 471
>gi|327265851|ref|XP_003217721.1| PREDICTED: peroxisome proliferator-activated receptor gamma-like
[Anolis carolinensis]
Length = 475
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 123/250 (49%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ S + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRSLAKLLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + C++ L P + + EVA + ++Q+
Sbjct: 248 YDMNSLMMGEDQIKCKH--------------LAPMQEQNKEVA-----------IRIFQR 282
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
+VQ + EFAK +PGF L +DQ+ L+K G E+ ++ + + SDG
Sbjct: 283 CQFRSVEAVQEITEFAKSIPGFVSLDLNDQVTLLKYGVHEIIYTLLASMMNKDGVLISDG 342
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 343 QGFMTREFLK 352
>gi|162567479|gb|ABQ23994.2| peroxisome proliferator-activated receptor gamma [Anas
platyrhynchos]
Length = 475
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 125/252 (49%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKRSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSE--TGSTRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E +G +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSGIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + C++ P + + EVA + ++Q+
Sbjct: 248 YDMNSLMMGEDQIKCKHVS--------------PLQEQNKEVA-----------IRIFQR 282
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
+VQ + EFAK +PGF +L +DQ+ L+K G E+ ++ L + SDG
Sbjct: 283 CQFRSVEAVQEITEFAKNIPGFVNLDLNDQVTLLKYGVHEIIYTLLASLMNKDGVLISDG 342
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 343 QGFMTREFLKSL 354
>gi|351704944|gb|EHB07863.1| Nuclear receptor subfamily 1 group D member 2 [Heterocephalus
glaber]
Length = 492
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 76/115 (66%), Gaps = 6/115 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRS Q+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 80 KGFFRRSTQQNIQYKKCLKNENCSIMRMNRNRCQECRFKKCLSVGMSRDAVRFGRIPKRE 139
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVI 111
++R +E S + ++ S L+ ++ +LP+ +L K L + I
Sbjct: 140 KQRMLTELQSAMKTMMNSQFSSHLQNDTLIEHHEQTALPAQEQLRPKPQLEQENI 194
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 36/47 (76%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
+W++F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ +
Sbjct: 358 IWEEFSMSFTPAVKEVVEFAKHIPGFRDLSQHDQVNLLKAGTFEVLM 404
>gi|381413307|gb|AFG28651.1| molt-regulating transcription factor, partial [Chilo infuscatellus]
Length = 418
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 114/265 (43%), Gaps = 66/265 (24%)
Query: 14 IEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPK-------------R 60
+ Y+C R+ C+V R+NRNRCQYCR +KCL +GMSRD+V++GR+ K R
Sbjct: 3 VNYQCPRNKACVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQREKVEDEVRYHR 62
Query: 61 SRERSDSETGSTRVSTTGAEPPSS----------------------LETAGPVQSLPSST 98
++ R+ ++ V + PSS AGP +
Sbjct: 63 AQMRAQTDAAPDSVYDAQQQTPSSSDQFHGHYNGYPGYGSPLSSYSYNNAGPALTSNMGI 122
Query: 99 ELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHE 158
+ YD+ + + Y + T L + ++S V S AE H
Sbjct: 123 QPQPPPQQPYDI---SGDYNADSTTYEPKQTGFLDTDFIGHAEGDISKVLV-KSLAEAHA 178
Query: 159 -------------------SQRLW--------LWQQFAAHVTPSVQRVVEFAKRVPGFCD 191
S+ L+ +W A +T +Q ++EFAK +PGF
Sbjct: 179 NTNPKLEYIHEMFRKPPDVSKLLFYNSMTYEEMWLDCADKLTGMIQNIIEFAKLIPGFMK 238
Query: 192 LSQDDQLILIKMGFFELWIGYVSRL 216
LSQDDQ++L+K G FEL I +SRL
Sbjct: 239 LSQDDQILLLKSGSFELAIVRLSRL 263
>gi|387912440|dbj|BAM15695.1| thyroid hormone receptor alpha [Glandirana rugosa]
Length = 418
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 121/243 (49%), Gaps = 37/243 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 82 KGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 141
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + T P PSS E +++I V++
Sbjct: 142 KRKLIEENRERRRKEEMIKTLQQRPE------------PSSEE--------WELIRIVTE 181
Query: 117 AHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPS 175
AH S N + + RR P ++ +AS + L + +F +TP+
Sbjct: 182 AHRSTNAQGSHWKQRR------KFLPEDIGQNPMASMPDS--DKVDLEAFSEFTKIITPA 233
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQ 233
+ RVV+FAK++P F +L +DQ+IL+K E+ + R DS +LT S M V R+
Sbjct: 234 ITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEMAVKRE 293
Query: 234 QLE 236
QL+
Sbjct: 294 QLK 296
>gi|301791796|ref|XP_002930866.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 1 group
D member 2-like [Ailuropoda melanoleuca]
Length = 576
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RER 64
++R
Sbjct: 184 KQR 186
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 398 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 457
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 458 VTFLSGKKYSVDDLHSM 474
>gi|410971527|ref|XP_003992219.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Felis
catus]
Length = 501
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 49 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 108
Query: 62 RER 64
++R
Sbjct: 109 KQR 111
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 323 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 382
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 383 VTFLSGKKYSVDDLHSM 399
>gi|73989968|ref|XP_542763.2| PREDICTED: nuclear receptor subfamily 1 group D member 2 isoform 1
[Canis lupus familiaris]
Length = 576
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RER 64
++R
Sbjct: 184 KQR 186
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 398 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 457
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 458 VTFLSGKKYSVDDLHSM 474
>gi|281348874|gb|EFB24458.1| hypothetical protein PANDA_021476 [Ailuropoda melanoleuca]
Length = 571
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 119 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 178
Query: 62 RER 64
++R
Sbjct: 179 KQR 181
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 393 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 452
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 453 VTFLSGKKYSVDDLHSM 469
>gi|51235736|gb|AAT98633.1| orphan nuclear receptor E75C [Manduca sexta]
Length = 256
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 77/127 (60%), Gaps = 25/127 (19%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 120 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 179
Query: 62 RER---SDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
+ R + ++ ++R A + ELD L V+ +AH
Sbjct: 180 KARILAAMQQSSTSRAHEQAA-----------------AAELDDAPRLLARVV----RAH 218
Query: 119 HSNCEYT 125
CE+T
Sbjct: 219 LDTCEFT 225
>gi|586091|sp|Q02777.1|THA_RANCA RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear
receptor subfamily 1 group A member 1
gi|213654|gb|AAA16902.1| c-erbA-alpha [Rana catesbeiana]
Length = 418
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 121/243 (49%), Gaps = 37/243 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 82 KGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 141
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + T P PSS E +++I V++
Sbjct: 142 KRKLIEENRERRRKEEMIKTLQQRPE------------PSSEE--------WELIRIVTE 181
Query: 117 AHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPS 175
AH S N + + RR P ++ +AS + L + +F +TP+
Sbjct: 182 AHRSTNAQGSHWKQRR------KFLPEDIGQNPMASMPDS--DKVDLEAFSEFTKIITPA 233
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQ 233
+ RVV+FAK++P F +L +DQ+IL+K E+ + R DS +LT S M V R+
Sbjct: 234 ITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEMAVKRE 293
Query: 234 QLE 236
QL+
Sbjct: 294 QLK 296
>gi|507211|gb|AAC52144.1| Rev-Erb-beta, partial [Mus musculus]
Length = 542
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 85/144 (59%), Gaps = 19/144 (13%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 90 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 149
Query: 62 RERSDSETGS---TRVST--TGAEPPSSLETAGPVQSLPSSTELDTKQLLTY-------- 108
++R E S T ++T +G +L +LP+ +L K L
Sbjct: 150 KQRMLIEMQSAMKTMMNTQFSGHLQNDTLAEQHDQSALPAQEQLRPKSQLEQENIKNTPS 209
Query: 109 -----DVILAVSQAHHSNCEYTEE 127
+VI V++AH Y +E
Sbjct: 210 DFAKEEVIGMVTRAHKDTFLYNQE 233
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 364 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 423
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 424 VTFLSGKKYSVDDLHSM 440
>gi|254553267|ref|NP_035714.3| nuclear receptor subfamily 1 group D member 2 [Mus musculus]
gi|6166581|sp|Q60674.1|NR1D2_MOUSE RecName: Full=Nuclear receptor subfamily 1 group D member 2;
AltName: Full=Orphan nuclear receptor RVR; AltName:
Full=Rev-erb-beta
gi|537290|gb|AAA79513.1| RVR [Mus musculus]
gi|66396497|gb|AAH96461.1| Nuclear receptor subfamily 1, group D, member 2 [Mus musculus]
gi|148688703|gb|EDL20650.1| nuclear receptor subfamily 1, group D, member 2, isoform CRA_b [Mus
musculus]
Length = 576
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 85/144 (59%), Gaps = 19/144 (13%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RERSDSETGS---TRVST--TGAEPPSSLETAGPVQSLPSSTELDTKQLLTY-------- 108
++R E S T ++T +G +L +LP+ +L K L
Sbjct: 184 KQRMLIEMQSAMKTMMNTQFSGHLQNDTLAEQHDQSALPAQEQLRPKSQLEQENIKNTPS 243
Query: 109 -----DVILAVSQAHHSNCEYTEE 127
+VI V++AH Y +E
Sbjct: 244 DFAKEEVIGMVTRAHKDTFLYNQE 267
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 398 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 457
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 458 VTFLSGKKYSVDDLHSM 474
>gi|26347753|dbj|BAC37525.1| unnamed protein product [Mus musculus]
Length = 576
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 85/144 (59%), Gaps = 19/144 (13%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RERSDSETGS---TRVST--TGAEPPSSLETAGPVQSLPSSTELDTKQLLTY-------- 108
++R E S T ++T +G +L +LP+ +L K L
Sbjct: 184 KQRMLIEMQSAMKTMMNTQFSGHLQNDTLAEQHDQSALPAQEQLRPKSQLEQENIKNTPS 243
Query: 109 -----DVILAVSQAHHSNCEYTEE 127
+VI V++AH Y +E
Sbjct: 244 DFAKEEVIGMVTRAHKDTFLYNQE 267
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 398 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 457
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 458 VTFLSGKKYSVDDLHSM 474
>gi|432910618|ref|XP_004078441.1| PREDICTED: nuclear receptor subfamily 1 group D member 2-like
[Oryzias latipes]
Length = 566
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 55/63 (87%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL+ C ++R+NRNRCQ CRFKKCLAVGMSRD+VR+GR+PKR
Sbjct: 113 KGFFRRSIQQNIQYKKCLKMENCTIMRINRNRCQQCRFKKCLAVGMSRDAVRFGRIPKRE 172
Query: 62 RER 64
++R
Sbjct: 173 KQR 175
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLS+ DQ+ L+K G FE+ + + L ++ +
Sbjct: 387 IWEEFSMSFTPAVREVVEFAKRIPGFRDLSEHDQVSLLKAGTFEVLMVRFASLFNMSERT 446
Query: 222 LTFSDG 227
+TF G
Sbjct: 447 VTFLSG 452
>gi|410904527|ref|XP_003965743.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Takifugu
rubripes]
Length = 599
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 55/63 (87%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL+ C ++R+NRNRCQ CRFKKCLAVGMSRD+VR+GR+PKR
Sbjct: 119 KGFFRRSIQQNIQYKKCLKMENCTIVRINRNRCQQCRFKKCLAVGMSRDAVRFGRIPKRE 178
Query: 62 RER 64
++R
Sbjct: 179 KQR 181
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+VQ VV+FAKR+PGF DL ++DQ+ L+K G FE+ + + L + +
Sbjct: 420 IWEEFSMSFTPAVQEVVDFAKRIPGFRDLPKNDQVSLLKAGTFEVLMVRFASLFNAAERT 479
Query: 222 LTFSDG 227
+TF G
Sbjct: 480 VTFLSG 485
>gi|50882280|gb|AAT85615.1| peroxisome proliferator-activated receptor beta [Sparus aurata]
Length = 506
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 123/255 (48%), Gaps = 54/255 (21%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+++ ++EY RC R C + + NRN+CQYCRF+KCL++GMS D++RYGR+P+
Sbjct: 160 KGFFRRTVRMKLEYDRCERS--CKIQKKNRNKCQYCRFQKCLSLGMSHDAIRYGRMPEAE 217
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDT--KQLLTYDVILAVSQAHH 119
R++ V+ AE + P ++L T KQ+ T A+
Sbjct: 218 RKK--------LVAGLLAEELNV--------GKPGGSDLKTLAKQVYT---------AYL 252
Query: 120 SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF----------A 169
N T++ R ++ + + +SP V +++ +W Q
Sbjct: 253 KNLSMTKKRARSIL-----MGKTASTSPFVIYDVDTLWKAESGLVWSQLVPGAPLTKEIG 307
Query: 170 AHV--------TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS 221
HV +V+ + EFAK +PGF DL +DQ+ L+K G E + L
Sbjct: 308 VHVFYRCQCTTVETVRELTEFAKCIPGFVDLFLNDQVTLLKYGVHEAIFAMLPSLMNKDG 367
Query: 222 LTFSDGM-YVTRQQL 235
L ++G +VTR+ L
Sbjct: 368 LLVANGKGFVTREFL 382
>gi|348535606|ref|XP_003455290.1| PREDICTED: nuclear receptor subfamily 1 group D member 2-like
[Oreochromis niloticus]
Length = 627
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 55/63 (87%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL VGMSRDSVR+GR+PKR
Sbjct: 146 KGFFRRSIQQNIQYKKCLKNESCPIMRINRNRCQQCRFKKCLLVGMSRDSVRFGRIPKRE 205
Query: 62 RER 64
++R
Sbjct: 206 KQR 208
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAK++PGF +LSQ DQ+ L+K G FE+ + + L D +
Sbjct: 449 VWEEFSHSFTPAVREVVEFAKKIPGFRELSQHDQVSLLKAGTFEVLVVRFASLFDVKDRT 508
Query: 222 LTFSDG 227
+TF G
Sbjct: 509 VTFLGG 514
>gi|348509890|ref|XP_003442479.1| PREDICTED: nuclear receptor subfamily 1 group D member 1-like
[Oreochromis niloticus]
Length = 643
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 59/71 (83%), Gaps = 1/71 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ C+++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 174 KGFFRRSIQQNIQYKKCVKNESCTIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 233
Query: 62 RERSDSETGST 72
++R +E S
Sbjct: 234 KQRMLAEMQSA 244
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ+DQ+ L+K G FE+ + + L + +
Sbjct: 457 IWEDFSLSFTPAVREVVEFAKHIPGFSDLSQNDQVTLLKAGTFEVLMVRFASLFNMKEQT 516
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + ++L M
Sbjct: 517 VTFVSGATYSLEELRAM 533
>gi|197111718|gb|ACH43023.1| thyroid hormone receptor alpha [Amphiprion melanopus]
Length = 409
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 124/242 (51%), Gaps = 35/242 (14%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +G C++ ++ RN+CQ CRFKKC++VGM+ D V RV
Sbjct: 73 KGFFRRTIQKNLHPSYSCKYEGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDESKRVA 132
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR R+ E E +Q P E DT + +++I V++AH
Sbjct: 133 KR------------RLIEENREKRKREEMVKTLQVRP---EPDTAE---WELIRMVTEAH 174
Query: 119 -HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
H+N + + + R+ + + P SP + L + +F +TP++
Sbjct: 175 RHTNAQGSSWKQKRKFLSDKIGQSP---VSPTSDGDKVD------LEAFSEFTKIITPAI 225
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQ 234
RVV+FAK++P F +L +DQ+IL+K E+ + R DS +LT S M V R+Q
Sbjct: 226 TRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAMRYDPDSETLTLSGEMAVKREQ 285
Query: 235 LE 236
L+
Sbjct: 286 LK 287
>gi|395540267|ref|XP_003772078.1| PREDICTED: nuclear receptor subfamily 1 group D member 2, partial
[Sarcophilus harrisii]
Length = 456
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 55/62 (88%), Gaps = 1/62 (1%)
Query: 4 GFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR +
Sbjct: 1 GFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREK 60
Query: 63 ER 64
+R
Sbjct: 61 QR 62
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 278 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 337
Query: 222 LTFSDG 227
+TF G
Sbjct: 338 VTFLSG 343
>gi|224065487|ref|XP_002187946.1| PREDICTED: peroxisome proliferator-activated receptor gamma
[Taeniopygia guttata]
Length = 475
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 124/252 (49%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + C++ P + + EVA + ++Q+
Sbjct: 248 YDMNSLMMGEDQIKCKHVS--------------PLQEENKEVA-----------IRIFQR 282
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
+VQ + EFAK +PGF +L +DQ+ L+K G E+ ++ L + SDG
Sbjct: 283 CQFRSVEAVQEITEFAKNIPGFVNLDLNDQVTLLKYGVHEIIYTLLASLMNKDGVLISDG 342
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 343 QGFMTREFLKSL 354
>gi|432862598|ref|XP_004069934.1| PREDICTED: peroxisome proliferator-activated receptor alpha
[Oryzias latipes]
Length = 412
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 117/251 (46%), Gaps = 44/251 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R +C + + NRN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 67 KGFFRRTIRLKLEYDKCER--RCKIQKKNRNKCQYCRFQKCLAVGMSHNAIRFGRMPQSE 124
Query: 62 RERSDSE--TGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH 119
+ + +E G V SL KQ+ YD A+
Sbjct: 125 KLKLKAEMVVGEREVEDPQLADQKSL----------------AKQI--YD-------AYL 159
Query: 120 SNCEYTEEGTRRLVRKPVSLPPSEVSSPE-------------VASSTAECHESQRLWLWQ 166
N T+ R ++ S PP + E V S+ A + ++
Sbjct: 160 KNFNMTKAKARTVLTGKTSTPPFVIHDMETLQRAEQTLVAKMVGSTGALKDREAEVRIFH 219
Query: 167 QFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFS 225
+V + EFAK VPGF L +DQ+ L+K G +E L+ S + D L
Sbjct: 220 CCQCTSVETVTELTEFAKSVPGFAALDLNDQVTLLKYGVYEALFALLASSMNKDGLLVAY 279
Query: 226 DGMYVTRQQLE 236
++TR+ L+
Sbjct: 280 GSGFITREFLK 290
>gi|63102362|gb|AAH95127.1| Nr1d1 protein, partial [Danio rerio]
Length = 511
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 142 KGFFRRSIQQNIQYKKCLKNETCTIMRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 201
Query: 62 RERSDSE 68
++R +E
Sbjct: 202 KQRMLAE 208
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 37/53 (69%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL 216
+W+ F+ TP+V+ VVEFAK +PGF LSQ+DQ+ L+K G FE+ + S L
Sbjct: 452 IWEDFSLSFTPAVREVVEFAKHIPGFSTLSQNDQVTLLKAGTFEVLMVRFSSL 504
>gi|298504094|gb|ADI86264.1| thyroid hormone receptor beta [Scarus iseri]
Length = 359
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 123/244 (50%), Gaps = 30/244 (12%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+AVGM+ D V R+
Sbjct: 40 KGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDNNKRLA 99
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR L+ + P+ E +D+I V++AH
Sbjct: 100 KR----------KLIEENRERRRREELQKTVWDRQEPTQEE--------WDLIRMVTEAH 141
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVA--SSTAECHESQRLWL--WQQFAAHVTP 174
S ++ RK +S + + PE +S E ++ + + QF +TP
Sbjct: 142 MSTNAQGNHWKQK--RKFLSAAGVKETKPEDIGQASMVNAPEGNKVDIEAFSQFTKIITP 199
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 200 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 259
Query: 233 QQLE 236
QL+
Sbjct: 260 GQLK 263
>gi|585482|sp|Q08882.1|HR3_MANSE RecName: Full=Probable nuclear hormone receptor HR3; Short=mHR3;
AltName: Full=Nuclear receptor subfamily 1 group F
member 4
gi|396804|emb|CAA52654.1| MHR3 [Manduca sexta]
Length = 548
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 115/269 (42%), Gaps = 55/269 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSR------------- 49
+GFFRRS + Y+C R+ C+V R+NRNRCQYCR +KCL +GMSR
Sbjct: 125 KGFFRRSQSTVVNYQCPRNKACVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 184
Query: 50 ----DSVRYGRVPKRSRE----------------RSDSETGSTRVSTTGAEPPSSL--ET 87
D VRY + R++ SD G A P SS
Sbjct: 185 EKVEDEVRYHKAQMRAQNDAAPDSVYDAQQQTPSSSDQFHGHYNGYPGYASPLSSYGYNN 244
Query: 88 AGP-VQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTE-------EG------TRRLV 133
AGP + S SS + + YD + + Y + EG + L
Sbjct: 245 AGPPLTSNMSSIQAQPQAQQPYDYADSTTTYEPKQPGYLDADFIGQVEGDISKVLVKSLA 304
Query: 134 RKPVSLPPS------EVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVP 187
+ + P S P+ S + +W A +T +Q ++EFAK +P
Sbjct: 305 ERHANTNPKLEYINEMFSKPQDVSKLLFYNSMTYEEMWLDCADKLTAMIQNIIEFAKLIP 364
Query: 188 GFCDLSQDDQLILIKMGFFELWIGYVSRL 216
GF L+QDDQ++L+K G FEL I +SRL
Sbjct: 365 GFMKLTQDDQILLLKSGSFELAIVRLSRL 393
>gi|241106442|ref|XP_002410049.1| nuclear receptor, putative [Ixodes scapularis]
gi|215492869|gb|EEC02510.1| nuclear receptor, putative [Ixodes scapularis]
Length = 498
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 83/126 (65%), Gaps = 20/126 (15%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPK
Sbjct: 60 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPK-- 117
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
RE++ +V+ + E ++L + EL+ + L +D ++ +AH
Sbjct: 118 REKAKILAAMQKVNASSQE-----------KAL--AVELEDEMRL-FDTVV---RAHEET 160
Query: 122 CEYTEE 127
C++T +
Sbjct: 161 CDFTSD 166
>gi|22219446|ref|NP_671743.1| nuclear receptor subfamily 1 group D member 2 [Rattus norvegicus]
gi|758418|gb|AAA64750.1| orphan nuclear receptor HZF-2 [Rattus norvegicus]
Length = 494
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 81/146 (55%), Gaps = 21/146 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD VR+GR+PKR
Sbjct: 39 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDRVRFGRIPKRE 98
Query: 62 RER------------SDSETGSTRVSTTGAEP-----PSSLETAGPVQSLPSSTELDTKQ 104
++R ++ G S T AEP P + E P S T
Sbjct: 99 KQRMLIEMQSAMKTMMSTQFGGHLQSDTLAEPHEQSVPPAQEQLRPSPSWSKKTSKAPLL 158
Query: 105 LLTY---DVILAVSQAHHSNCEYTEE 127
LL VI V++AH Y +E
Sbjct: 159 LLILQRRKVIGMVTRAHKDTFLYNQE 184
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 315 IWEEFSMSFTPAVKEVVEFAKCIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 374
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 375 VTFLSGKKYSVDDLHSM 391
>gi|440905289|gb|ELR55685.1| Nuclear receptor subfamily 1 group D member 2, partial [Bos
grunniens mutus]
Length = 578
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RER 64
++R
Sbjct: 184 KQR 186
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 400 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 459
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 460 VTFLSGKKYSVDDLHSM 476
>gi|687735|gb|AAA62508.1| Rev-ErbA-beta, partial [Rattus norvegicus]
Length = 533
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 86/151 (56%), Gaps = 31/151 (20%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 79 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 138
Query: 62 RER------------SDSETGSTRVSTTGAEP-----PSSLETAGP--------VQSLPS 96
++R ++ G S T AEP P + E P ++S P
Sbjct: 139 KQRMLIEMQSAMKTMMSTQFGGHLQSDTLAEPHEQSVPPAQEQLRPKPQLEQENIKSTPP 198
Query: 97 STELDTKQLLTYDVILAVSQAHHSNCEYTEE 127
++ ++ VI V++AH Y +E
Sbjct: 199 PSDFAKEE-----VIGMVTRAHKDTFLYNQE 224
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 355 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 414
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 415 VTFLSGKKYSVDDLHSM 431
>gi|350590999|ref|XP_003358388.2| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Sus
scrofa]
Length = 804
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 350 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 409
Query: 62 RER 64
++R
Sbjct: 410 KQR 412
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 626 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 685
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 686 VTFLSGKKYSVDDLHSM 702
>gi|148688702|gb|EDL20649.1| nuclear receptor subfamily 1, group D, member 2, isoform CRA_a [Mus
musculus]
Length = 599
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 85/144 (59%), Gaps = 19/144 (13%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 147 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 206
Query: 62 RERSDSETGS---TRVST--TGAEPPSSLETAGPVQSLPSSTELDTKQLLTY-------- 108
++R E S T ++T +G +L +LP+ +L K L
Sbjct: 207 KQRMLIEMQSAMKTMMNTQFSGHLQNDTLAEQHDQSALPAQEQLRPKSQLEQENIKNTPS 266
Query: 109 -----DVILAVSQAHHSNCEYTEE 127
+VI V++AH Y +E
Sbjct: 267 DFAKEEVIGMVTRAHKDTFLYNQE 290
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 421 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 480
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 481 VTFLSGKKYSVDDLHSM 497
>gi|71992375|ref|NP_001021667.1| Protein NHR-85, isoform a [Caenorhabditis elegans]
gi|17369898|sp|Q9XUK7.2|NHR85_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-85
gi|11060535|emb|CAB04919.2| Protein NHR-85, isoform a [Caenorhabditis elegans]
gi|28396042|gb|AAO39184.1| nuclear receptor NHR-85 [Caenorhabditis elegans]
Length = 514
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I YR C R CL++R NRNRCQ CR KKCLAVGMSRD+VR+GRVPKR
Sbjct: 134 KGFFRRSIQQKITYRACTRAEDCLILRNNRNRCQCCRLKKCLAVGMSRDAVRFGRVPKRE 193
Query: 62 RERSDSETGSTRVST 76
+ R E T V +
Sbjct: 194 KARMFEEMQKTNVQS 208
>gi|148688697|gb|EDL20644.1| retinoic acid receptor, beta, isoform CRA_b [Mus musculus]
Length = 429
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 102/220 (46%), Gaps = 46/220 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 129 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 187
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD D+ + +AH
Sbjct: 188 EPSKQEC---------------------TESYEMTAELD-------DLTEKIRKAHQE-- 217
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P +S+A+ L LW +F+ T + ++VEF
Sbjct: 218 ---------------TFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF 262
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSL 222
AKR+PGF L+ DQ+ L+K ++ + + T++ L
Sbjct: 263 AKRLPGFTGLTIADQITLLKAACLDILLLPLEMDDTETGL 302
>gi|348511147|ref|XP_003443106.1| PREDICTED: nuclear receptor subfamily 1 group D member 2-like
[Oreochromis niloticus]
Length = 599
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 55/63 (87%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL+ C ++R+NRNRCQ CRFKKCLAVGMSRD+VR+GR+PKR
Sbjct: 119 KGFFRRSIQQNIQYKKCLKMENCTIMRINRNRCQQCRFKKCLAVGMSRDAVRFGRIPKRE 178
Query: 62 RER 64
++R
Sbjct: 179 KQR 181
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAK +PGF DL + DQ+ L+K G FE+ + + L + +
Sbjct: 420 VWEEFSMSFTPAVREVVEFAKGIPGFRDLPEHDQVGLLKAGTFEVLMVRFASLFNIAEQT 479
Query: 222 LTFSDG 227
+TF G
Sbjct: 480 VTFLSG 485
>gi|157679168|dbj|BAF80459.1| peroxisome proliferator-activated receptor gamma [Pagrus major]
Length = 522
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 122/250 (48%), Gaps = 19/250 (7%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y C D C + + +RN+CQYCRF+KCL VGMS +++R+GR+P+
Sbjct: 153 KGFFRRTIRLKLVYDHC--DLHCRIHKKSRNKCQYCRFQKCLNVGMSHNAIRFGRMPQAE 210
Query: 62 RER------SDSETGSTRVSTTGAEPPSSLE--------TAGPVQSLPSSTELDTKQLLT 107
+E+ SD E + A E T +++ S D +
Sbjct: 211 KEKLLAEFSSDMEHMHPEAADLRALSRHLYEAYLKYFPLTKAKARAILSGKTGDNAPFVI 270
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
+D+ + NC+ + +++ V+ + S + ++ L +Q
Sbjct: 271 HDMKSLMEGEQFINCKQIPNQEHQQQTSALTIGHGGVTGAYLGSDHSGM-DAVELRFFQS 329
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTT-DSSLTFSD 226
+ +V+ V EFAK +PGF DL +DQ+ L+K G E+ I ++ L D +L
Sbjct: 330 CQSRSAEAVREVTEFAKSIPGFIDLDLNDQVTLLKYGVIEILIIMMAPLMNKDGTLIAYG 389
Query: 227 GMYVTRQQLE 236
+++TR+ L+
Sbjct: 390 QIFMTREFLK 399
>gi|37726911|gb|AAO62999.1| thyroid hormone receptor beta [Necturus maculosus]
Length = 373
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 124/243 (51%), Gaps = 37/243 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC VGM+ D V R+
Sbjct: 40 KGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCTHVGMATDLVLDDGKRLA 99
Query: 59 KRSRERSDSET-GSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQA 117
KR + E + T + P P+S E + +I V +A
Sbjct: 100 KRKLIEDNREKRRRDELQKTLIDRPE-----------PTSEE--------WGLIQIVKEA 140
Query: 118 HHS-NCEYTEEGTRRL-VRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPS 175
H + N E ++ +R+ + K + P V++PE E + QF +TP+
Sbjct: 141 HMATNAEGSQWKQKRIFLPKDIGQAPI-VNAPESGKVDLEA--------FSQFTKIITPA 191
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQ 233
+ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 192 ITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESKTLTLNGEMAVTRD 251
Query: 234 QLE 236
QL+
Sbjct: 252 QLK 254
>gi|6166582|sp|Q63504.1|NR1D2_RAT RecName: Full=Nuclear receptor subfamily 1 group D member 2;
AltName: Full=EAR4; AltName: Full=Rev-erb-beta
gi|695707|emb|CAA58021.1| Rev-erb-Beta1 [Rattus norvegicus]
gi|149040000|gb|EDL94084.1| nuclear receptor subfamily 1, group D, member 2, isoform CRA_a
[Rattus norvegicus]
gi|149040001|gb|EDL94085.1| nuclear receptor subfamily 1, group D, member 2, isoform CRA_a
[Rattus norvegicus]
Length = 578
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 86/151 (56%), Gaps = 31/151 (20%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RER------------SDSETGSTRVSTTGAEP-----PSSLETAGP--------VQSLPS 96
++R ++ G S T AEP P + E P ++S P
Sbjct: 184 KQRMLIEMQSAMKTMMSTQFGGHLQSDTLAEPHEQSVPPAQEQLRPKPQLEQENIKSTPP 243
Query: 97 STELDTKQLLTYDVILAVSQAHHSNCEYTEE 127
++ ++ VI V++AH Y +E
Sbjct: 244 PSDFAKEE-----VIGMVTRAHKDTFLYNQE 269
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 400 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 459
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 460 VTFLSGKKYSVDDLHSM 476
>gi|379136516|gb|AFC93487.1| nuclear receptor subfamily 1 group D member 1, partial [Gadus
morhua]
Length = 111
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 64/86 (74%), Gaps = 6/86 (6%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I Y+ C+++ CL++R+NRNRCQ+CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 25 KGFFRRSIQQNINYKMCVKNENCLIMRMNRNRCQHCRFKKCLSVGMSRDAVRFGRIPKRE 84
Query: 62 RERSDSETGS-----TRVSTTGAEPP 82
++R E S +T +PP
Sbjct: 85 KQRLLDEMQSYMNSLNESATMDMDPP 110
>gi|444714013|gb|ELW54901.1| Thyroid hormone receptor alpha [Tupaia chinensis]
Length = 423
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 123/242 (50%), Gaps = 22/242 (9%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D +G K
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDCKGHGHGLKG 133
Query: 61 SRE--RSDSETGSTR-VSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQA 117
+R DS+ + R + E E +Q P T + +D+I ++A
Sbjct: 134 ARGVVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEE------WDLIHVATEA 187
Query: 118 HHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
H S N + + RR LP SP V+ + L + +F +TP++
Sbjct: 188 HRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKIITPAI 239
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQ 234
RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V R+Q
Sbjct: 240 TRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQ 299
Query: 235 LE 236
L+
Sbjct: 300 LK 301
>gi|354472063|ref|XP_003498260.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 1 group
D member 2-like [Cricetulus griseus]
Length = 634
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 180 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 239
Query: 62 RER 64
++R
Sbjct: 240 KQR 242
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 456 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 515
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 516 VTFLSGKKYSVDDLHSM 532
>gi|50080132|dbj|BAD27472.1| thyroid hormone receptor beta 2 [Conger myriaster]
Length = 378
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 123/249 (49%), Gaps = 40/249 (16%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV-----RYG 55
+GFFRR+IQK + Y C + KC++ ++ RN+CQ CRF+KC+AVGM+ D V R
Sbjct: 36 KGFFRRTIQKNLNPTYACKYEAKCVIDKVTRNQCQECRFRKCIAVGMATDLVLDDSKRLA 95
Query: 56 RVPKRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVS 115
+ R + S PS E +D+I V+
Sbjct: 96 KRRLIEENRERRRREELQRSVWEKPEPSPQE---------------------WDLIHLVT 134
Query: 116 QAHHS-NCEYTEEGTRRLVRKPVSLP---PSEVSSPEVASSTAECHESQRLWL--WQQFA 169
+AH + N + +R + V +P P ++ P + S+ E ++ + + QF
Sbjct: 135 EAHMATNAQGNHWKQKRKFLRDVCVPECKPEDLGHPPILSAP----EGNKVDIEAFSQFT 190
Query: 170 AHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDG 227
+TP++ RVV+FAK++P FC+L +DQ++L+K E+ + R +S +LT +
Sbjct: 191 KIITPAITRVVDFAKKLPMFCELPCEDQIVLLKGCCMEIMSLRAAVRYDPESETLTLNGE 250
Query: 228 MYVTRQQLE 236
M VTR QL+
Sbjct: 251 MAVTRGQLK 259
>gi|348535608|ref|XP_003455291.1| PREDICTED: thyroid hormone receptor beta-like [Oreochromis
niloticus]
Length = 511
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 126/244 (51%), Gaps = 30/244 (12%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+AVGM+ D V R+
Sbjct: 169 KGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLA 228
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR + E L+ + P+ E +D+I V++AH
Sbjct: 229 KRKLIEENRERRRR----------EELQKTAWDRLEPTQEE--------WDLIRMVTEAH 270
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPE--VASSTAECHESQRLWL--WQQFAAHVTP 174
+ ++ RK +S + + PE +ST E ++ + + QF +TP
Sbjct: 271 MATNAQGNHWKQK--RKFLSAAGVKEAKPEDIGQASTGNAPEGSKVDIEAFSQFTKIITP 328
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 329 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 388
Query: 233 QQLE 236
QL+
Sbjct: 389 GQLK 392
>gi|297491334|ref|XP_002698802.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Bos
taurus]
gi|296472291|tpg|DAA14406.1| TPA: nuclear receptor subfamily 1, group D, member 2 [Bos taurus]
Length = 585
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 131 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 190
Query: 62 RER 64
++R
Sbjct: 191 KQR 193
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 407 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 466
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 467 VTFLSGKKYSVDDLHSM 483
>gi|119918335|ref|XP_610586.3| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Bos
taurus]
Length = 585
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 131 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 190
Query: 62 RER 64
++R
Sbjct: 191 KQR 193
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 407 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 466
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 467 VTFLSGKKYSVDDLHSM 483
>gi|326924824|ref|XP_003208625.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Meleagris
gallopavo]
Length = 494
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 114/232 (49%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +RSR
Sbjct: 164 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRSR 221
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ERS++E S T+G + +P L+ + LAV +
Sbjct: 222 ERSENEAES---------------TSGGSEDMPVERILEAE--------LAVEPKTEA-- 256
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y++ T PV T CH + + Q F +VE+
Sbjct: 257 -YSDVNTESSTNDPV---------------TNICHAADK----QLFT---------LVEW 287
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 288 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 339
>gi|185136115|ref|NP_001117100.1| thyroid hormone receptor alpha [Salmo salar]
gi|13431920|sp|Q9W785.1|THA_SALSA RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear
receptor subfamily 1 group A member 1
gi|5052740|gb|AAD38689.1|AF146775_1 thyroid hormone receptor alpha [Salmo salar]
Length = 416
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 121/243 (49%), Gaps = 37/243 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRF+KC+AV M+ D V RV
Sbjct: 80 KGFFRRTIQKNLHPAYSCKYDGCCIIDKITRNQCQLCRFRKCIAVCMAMDLVLDDSKRVA 139
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + V T A P P S+E +++I V++
Sbjct: 140 KRRLIEENREKRKKDEIVKTLQARPE------------PDSSE--------WELIRHVTE 179
Query: 117 AH-HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPS 175
AH H+N + + +R LP SP + + L + +F +TP+
Sbjct: 180 AHRHTNAQGSHWKQKRKF-----LPEDIGQSPRAPTPDG---DKVDLEAFSEFTKIITPA 231
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQ 233
+ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V R+
Sbjct: 232 ITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKRE 291
Query: 234 QLE 236
QL+
Sbjct: 292 QLK 294
>gi|426256622|ref|XP_004021937.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 1 group
D member 2 [Ovis aries]
Length = 588
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 134 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 193
Query: 62 RER 64
++R
Sbjct: 194 KQR 196
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 410 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 469
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 470 VTFLSGKKYSVDDLHSM 486
>gi|50233771|ref|NP_571140.1| nuclear receptor subfamily 1 group D member 2 [Danio rerio]
gi|49257184|gb|AAH74065.1| Nuclear receptor subfamily 1, group D, member 2b [Danio rerio]
gi|182890554|gb|AAI64697.1| Nr1d2b protein [Danio rerio]
Length = 578
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 55/63 (87%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL VGMSRD+VR+GR+PKR
Sbjct: 107 KGFFRRSIQQNIQYKKCLKNESCPIMRINRNRCQQCRFKKCLLVGMSRDAVRFGRIPKRE 166
Query: 62 RER 64
++R
Sbjct: 167 KQR 169
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 37/47 (78%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ +
Sbjct: 400 IWEEFSMSFTPAVREVVEFAKRIPGFKDLSQHDQVSLLKAGTFEVLV 446
>gi|341875356|gb|EGT31291.1| CBN-NHR-85 protein [Caenorhabditis brenneri]
Length = 467
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I YR C R CL++R NRNRCQ CR KKCLAVGMSRD+VR+GRVPKR
Sbjct: 83 KGFFRRSIQQKITYRACTRAEDCLILRNNRNRCQCCRLKKCLAVGMSRDAVRFGRVPKRE 142
Query: 62 RERSDSETGSTRVST 76
+ R E T V +
Sbjct: 143 KARMFEEMQKTNVQS 157
>gi|1708295|sp|P49868.1|HR3_GALME RecName: Full=Probable nuclear hormone receptor HR3; Short=gHR3;
AltName: Full=Nuclear receptor subfamily 1 group F
member 4
gi|409272|gb|AAA83401.1| GHR3 [Galleria mellonella]
Length = 557
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 122/292 (41%), Gaps = 96/292 (32%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSR------------- 49
+GFFRRS + Y+C R+ C+V R+NRNRCQYCR +KCL +GMSR
Sbjct: 129 KGFFRRSQSTVVNYQCPRNKACVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 188
Query: 50 ----DSVRYGRVPKRSRERSDSETGSTRVSTTGAEPPSSLE------------------- 86
D VRY R++ R+ ++ V + PSS +
Sbjct: 189 EKVEDEVRY----HRAQMRAQTDAAPDSVYDAQQQTPSSSDQFHGHYNGYPGYRSPLSSY 244
Query: 87 ----TAGPVQS---------------------LPSSTELDTKQ---LLTYDVI------- 111
AGP + + S+T + KQ L D I
Sbjct: 245 GYGGNAGPALTSNMNIQPQAPQQQPYDVSADYVDSTTAYEPKQTGGFLDADFIGHAEGDI 304
Query: 112 ---LAVSQAH-HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVAS---STAECHESQRLWL 164
L S A H+N E + RKP P+V+ + +E +
Sbjct: 305 SKVLVKSLAEAHANTNPKLEYVHEMFRKP----------PDVSKLLFYNSMTYEE----M 350
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL 216
W A +T +Q ++EFAK +PGF LSQDDQ++L+K G FEL I +SRL
Sbjct: 351 WLDCADKLTGMIQNIIEFAKLIPGFMKLSQDDQILLLKSGSFELAIVRLSRL 402
>gi|14994043|gb|AAK76396.1| Rev-Erb beta 2 [Danio rerio]
Length = 592
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 55/63 (87%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL VGMSRD+VR+GR+PKR
Sbjct: 121 KGFFRRSIQQNIQYKKCLKNESCPIMRINRNRCQQCRFKKCLLVGMSRDAVRFGRIPKRE 180
Query: 62 RER 64
++R
Sbjct: 181 KQR 183
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 37/47 (78%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ +
Sbjct: 414 IWEEFSMSFTPAVREVVEFAKRIPGFKDLSQHDQVSLLKAGTFEVLV 460
>gi|449268313|gb|EMC79183.1| Retinoic acid receptor RXR-gamma, partial [Columba livia]
Length = 451
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 117/232 (50%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +RSR
Sbjct: 148 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRSR 205
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ERS++E ST + G+E ++ +++L + LAV +
Sbjct: 206 ERSENEAEST---SNGSE------------------DMPVERILEAE--LAVEPKTEA-- 240
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y++ T PV T CH + + Q F +VE+
Sbjct: 241 -YSDVNTESSTNDPV---------------TNICHAADK----QLFT---------LVEW 271
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 272 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 323
>gi|326678036|ref|XP_699900.5| PREDICTED: peroxisome proliferator-activated receptor delta [Danio
rerio]
Length = 467
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 116/253 (45%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY RC R C + + +RN+CQ+CRF+KCL +GMS D++RYGR+P+
Sbjct: 121 KGFFRRTIRMKLEYERCER--SCKIQKKSRNKCQFCRFQKCLMLGMSHDAIRYGRMPEAE 178
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + G++ +S E D K L V+ A+ N
Sbjct: 179 KRKL---VAGLLAGERGSQ---------------NSNESDLKTLAKR-----VNNAYLKN 215
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPS------ 175
T++ R ++ S S+P V +++ +W Q P+
Sbjct: 216 LNMTKKKARNILTGKTS-----ASTPFVIHDMDSLVQAENGLVWNQVIHGAPPNKEIGVH 270
Query: 176 ------------VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
V+ + EF+K +PGF DL +DQ+ L+K G E + L L
Sbjct: 271 VFYRCQCTTVETVRELTEFSKSIPGFIDLFLNDQVTLLKYGVHEAIFAMLPSLMNKDGLL 330
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 331 VANGRGFVTREFL 343
>gi|308470171|ref|XP_003097320.1| CRE-NHR-85 protein [Caenorhabditis remanei]
gi|308240292|gb|EFO84244.1| CRE-NHR-85 protein [Caenorhabditis remanei]
Length = 499
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C R CL++R NRNRCQ CR KKCLAVGMSRD+VR+GRVPKR
Sbjct: 135 KGFFRRSIQQKIQYRACTRVEDCLILRNNRNRCQCCRLKKCLAVGMSRDAVRFGRVPKRE 194
Query: 62 RERSDSETGSTRVST 76
+ R E T V +
Sbjct: 195 KARMFEEMQKTNVQS 209
>gi|134270849|gb|ABO69005.1| peroxisome proliferator-activated receptor gamma [Dentex dentex]
Length = 505
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 19/252 (7%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y C D C + + +RN+CQYCRF+KCL VGMS +++R+GR+P+
Sbjct: 153 KGFFRRTIRLKLVYDHC--DLHCRIHKKSRNKCQYCRFQKCLNVGMSHNAIRFGRMPQAE 210
Query: 62 RER------SDSETGSTRVSTTGAEPPSSLE--------TAGPVQSLPSSTELDTKQLLT 107
+E+ SD E + A E T +++ S D +
Sbjct: 211 KEKLLAEFSSDMEHMHPEAADLRALSRHLYEAYLKYFPLTKAKARAILSGKTGDNAPFVI 270
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
+D+ + NC+ + +++ V+ + S + ++ L +Q
Sbjct: 271 HDMKSLMEGEQFINCKQIPNQEHQQQTSALTIGHGGVTGAYLGSDHSGM-DAVELRFFQS 329
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
+ +V+ V EFAK +PGF DL +DQ+ L+K G E+ I ++ L S G
Sbjct: 330 CQSRSAEAVREVTEFAKSIPGFIDLDLNDQVTLLKYGVIEILIIMMAPLMNKDGTLISYG 389
Query: 228 -MYVTRQQLEVM 238
+++TR+ L+ +
Sbjct: 390 QIFMTREFLKSL 401
>gi|16797872|gb|AAL29194.1|AF323681_1 nuclear receptor AmNR2 [Acropora millepora]
Length = 448
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 26/238 (10%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPK-RS 61
+GFF+R++QKQ+EY C DG C V +++RNRCQYCRF KCLA GM +++VR R P R
Sbjct: 107 KGFFKRTVQKQLEYTCKGDGNCEVNQISRNRCQYCRFNKCLAQGMLKEAVREDRTPGGRH 166
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHS- 120
R RS + + + + P T +++ D S A S
Sbjct: 167 RHRSLQDHRPKKPHRSARDEPG------------------TNEVVNGDDCTDKSLAPRSA 208
Query: 121 NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVV 180
+ + E T + K + + PE+ + E E + A +Q V+
Sbjct: 209 DAPSSREETMAFIAK---IQENVTLVPEIPGHSLESDEKPGSKDVNKLMALAYTELQFVI 265
Query: 181 EFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSLTFSDGMYVTRQQL 235
++AK VPGF DL +DQ+ L+K F +L + Y S S+ FS + ++++
Sbjct: 266 QWAKGVPGFKDLHLEDQVCLLKACFMDLNVFRLAYRSVACDPMSVRFSQNTILEKEEV 323
>gi|223018255|gb|ACM78031.1| peroxisome proliferator activated receptor alpha b
[Ctenopharyngodon idella]
Length = 467
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 118/252 (46%), Gaps = 42/252 (16%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R +C + + NRN+CQYCRF+KCL+VGMS +++R+GR+P+
Sbjct: 122 KGFFRRTIRLKLEYDKCER--RCKIQKRNRNKCQYCRFQKCLSVGMSHNAIRFGRMPQSE 179
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA-VSQAHHS 120
+ R +E L E++ QL + + +A+
Sbjct: 180 KLRLKAEI------------------------LTGEREVEDPQLADQKTLAKQIYEAYMK 215
Query: 121 NCEYTEEGTRRLVRKPVSLPPSEVSSPE-------------VASSTAECHESQRLWLWQQ 167
N + R ++ S PP + E V SS ++ + ++
Sbjct: 216 NFNMNKCKARTILTGKTSTPPFVIHDMETLQLAEQTFVAKMVGSSGGLLNKDAEVRIFHC 275
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSD 226
+V + EFAK VPGF +L +DQ+ L+K G E L+ S + D L
Sbjct: 276 CQCTSVETVTELTEFAKSVPGFSNLDLNDQVTLLKYGVHEALFAMLASCMNKDGLLVAYG 335
Query: 227 GMYVTRQQLEVM 238
++TR+ L+ +
Sbjct: 336 SGFITREFLKSL 347
>gi|431898965|gb|ELK07335.1| Retinoic acid receptor RXR-alpha [Pteropus alecto]
Length = 439
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 112/233 (48%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 133 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 190
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+RS++E AEP SS PV+ + + LAV
Sbjct: 191 DRSEAE----------AEPASSANEDMPVEKI-------------LEAELAV-------- 219
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L PS + P T C + + Q F +VE+
Sbjct: 220 ---EPKTETYVEANMGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 259
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 260 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 312
>gi|6448520|emb|CAB61238.1| peroxisome proliferator activated receptor gamma [Crocodylus
niloticus]
Length = 393
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 121/250 (48%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 56 KGFFRRTIRLKLIYDRC--DLNCRIHKKGRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 113
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 114 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 173
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + C++ P + + EVA + ++Q+
Sbjct: 174 YDMNSLMMGEDQIKCKHVS--------------PLQEQNKEVA-----------IRIFQR 208
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
+VQ EFAK +PGF +L +DQ+ L+K G E+ ++ L + SDG
Sbjct: 209 CQFRSVEAVQEXTEFAKNIPGFVNLDLNDQVTLLKYGVHEIIYTLLASLMNKDGVLISDG 268
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 269 QGFMTREFLK 278
>gi|15741116|gb|AAL06732.1| thyroid hormone receptor beta small isoform [Salmo salar]
Length = 387
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 125/243 (51%), Gaps = 37/243 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C + KC++ ++ RN+CQ CRFKKC+AVGM+ D V R+
Sbjct: 54 KGFFRRTIQKNLNPTYACKYEAKCIIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLA 113
Query: 59 KRSR-ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQA 117
KR E + + T + P PS E +D+I V++A
Sbjct: 114 KRKLIEENRERRRKEELQKTVWDRPE-----------PSQEE--------WDLIRMVTEA 154
Query: 118 HHS-NCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPS 175
H S N + + R+ + + + P +++PE + E + QF +TP+
Sbjct: 155 HMSTNAQGNHWKQKRKFLPEDIGQAPV-INAPEGSKVDIEA--------FSQFTKIITPA 205
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQ 233
+ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 206 ITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRG 265
Query: 234 QLE 236
QL+
Sbjct: 266 QLK 268
>gi|344237342|gb|EGV93445.1| Nuclear receptor subfamily 1 group D member 2 [Cricetulus griseus]
Length = 265
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 39 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 98
Query: 62 RER 64
++R
Sbjct: 99 KQR 101
>gi|449266326|gb|EMC77390.1| Peroxisome proliferator-activated receptor gamma [Columba livia]
Length = 475
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 122/250 (48%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + C++ P + + EVA + ++Q+
Sbjct: 248 YDMNSLMMGEDQIKCKHVS--------------PLQEENKEVA-----------IRIFQR 282
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
+VQ + EFAK +PGF L +DQ+ L+K G E+ ++ L + SDG
Sbjct: 283 CQFRSVEAVQEITEFAKNIPGFVSLDLNDQVTLLKYGVHEIIYTLLASLMNKDGVLISDG 342
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 343 QGFMTREFLK 352
>gi|269785035|ref|NP_001161669.1| thyroid hormone receptor [Saccoglossus kowalevskii]
gi|268054363|gb|ACY92668.1| thyroid hormone receptor [Saccoglossus kowalevskii]
Length = 381
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 27/235 (11%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRR+IQK + Y C + +C++ + RN+CQ CR+KKCLAVGM+ D V ++++
Sbjct: 50 KGFFRRTIQKNLSYYCKWNEECIIDKTTRNQCQQCRYKKCLAVGMAPDLV-LNENQRKAK 108
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ +E R L T+G L SS ++ + L + V++A
Sbjct: 109 RKLIAENRDRRRRE------DILRTSG---ILLSSQLSESDEELIHHVVMA--------- 150
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E + ++ S+ +E PE E + WQ A VTPS+ +VVEF
Sbjct: 151 --NRETCKMFNKRRESVESNEY-EPEAKKLKVEFPDKLS---WQNLAEVVTPSIIKVVEF 204
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQL 235
AKRVPGF L +DQ++L+K E+ + + D+ +L S+G+ V + L
Sbjct: 205 AKRVPGFTTLEYNDQVLLLKTCCMEIMCLRIAQKYDADTKTLLLSNGLKVQKGHL 259
>gi|126341433|ref|XP_001369854.1| PREDICTED: thyroid hormone receptor beta [Monodelphis domestica]
Length = 476
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 125/244 (51%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 143 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 202
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + T G +P P+ E +D+I V++
Sbjct: 203 KRKLIEENREKRRREELQKTIGHKPE------------PTDEE--------WDLIRTVTE 242
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + QF +TP
Sbjct: 243 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLE--------AFSQFTKIITP 293
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 294 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 353
Query: 233 QQLE 236
QL+
Sbjct: 354 GQLK 357
>gi|348517947|ref|XP_003446494.1| PREDICTED: retinoic acid receptor alpha-B-like [Oreochromis
niloticus]
Length = 483
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 113/236 (47%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQ CR +KCL VGMS++ VR R K+
Sbjct: 118 KGFFRRSIQKNMVYTCHRDKVCVINKVTRNRCQSCRLQKCLDVGMSKELVRNDRTKKKKE 177
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E+ +T +S DT+Q+ I V +AH
Sbjct: 178 EKKQPDTEIYVLSA------------------------DTEQM-----IERVRRAHQD-- 206
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P S+++E + + LW +F+ T + + VEF
Sbjct: 207 ---------------TFPSLCQLGKYTTSNSSEHRVALDVSLWDKFSELSTKCIIKTVEF 251
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AK++PGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ + R Q+
Sbjct: 252 AKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMH 307
>gi|351698410|gb|EHB01329.1| Nuclear receptor ROR-alpha [Heterocephalus glaber]
Length = 571
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 127/294 (43%), Gaps = 66/294 (22%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R +RNRCQ+CR +KCLAVGMSRD+V++GR+ K+ R
Sbjct: 143 KGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQR 202
Query: 63 ERSDSETGSTRV---STTGAEPPSSLETAGPVQSLPSS--TELDTKQLLTY--------- 108
+ +E R+ + P E P S+ ++ TEL + L TY
Sbjct: 203 DSLYAEVQKHRLQQQQRDHQQQPGEAEPLTPTYSISANGLTELH-EDLSTYMDGHTPEGS 261
Query: 109 -----------DVILAVSQAH--------HSNCEYTEEG-------TRRLVRKPVSLPPS 142
D+ + Q+ C+YT T VS+
Sbjct: 262 KADSAVSSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFLKNSFTNGETSPTVSMAEL 321
Query: 143 EVSSPEVASSTAECHESQRLWL----WQQFAAHVTPSVQR-------------------- 178
E + ++ S E + R L WQ F T + Q
Sbjct: 322 EHLAQNISKSHLETCQYLREELQQITWQTFLQEETENYQNKQREVMWQLCAIKITEAIQY 381
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSDGMYVT 231
VVEFAKR+ GF +L Q+DQ++L+K G E ++I + ++ + DG Y +
Sbjct: 382 VVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYAS 435
>gi|112806970|dbj|BAF03081.1| thyroid hormone receptor beta [Eublepharis macularius]
Length = 369
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 121/242 (50%), Gaps = 35/242 (14%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 36 KGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 95
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + T G +P P+ E + +++T + +Q
Sbjct: 96 KRKLIEENREKRRREELQKTIGIKPE------------PTDEEWELIKIVTEAHVATNAQ 143
Query: 117 AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
H + R+ + + + P V++PE E + QF +TP++
Sbjct: 144 GSHW------KQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSQFTKIITPAI 188
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQ 234
RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR Q
Sbjct: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
Query: 235 LE 236
L+
Sbjct: 249 LK 250
>gi|50080130|dbj|BAD27471.1| thyroid hormone receptor beta 1 [Conger myriaster]
Length = 397
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 122/242 (50%), Gaps = 25/242 (10%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60
+GFFRR+IQK + Y C +GKC + ++ RN+CQ CRFKKC+AVGM+ D V
Sbjct: 54 KGFFRRTIQKNLHPTYACKYEGKCAIDKVTRNQCQECRFKKCIAVGMATDLV-------- 105
Query: 61 SRERSDSETGSTR--VSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
DS+ + R + E V S P T + +++I AV++AH
Sbjct: 106 ---LDDSKRLAKRRLIEENRQRRRRREEVQRKVWSKPEPTPDE------WELIRAVTEAH 156
Query: 119 -HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSV 176
+N + +R + V + S+ A S+ L + QF +TP++
Sbjct: 157 VATNAQGNHWKQKRKFLRAVEVKESKAEDIGQAPIINAPDGSKVDLEAFSQFTQIITPAI 216
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQ 234
RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR Q
Sbjct: 217 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 276
Query: 235 LE 236
L+
Sbjct: 277 LK 278
>gi|18859511|ref|NP_571415.1| thyroid hormone receptor beta [Danio rerio]
gi|6492254|gb|AAF14239.1|AF109732_1 thyroid hormone receptor beta 1 [Danio rerio]
gi|190337500|gb|AAI63114.1| Thyroid hormone receptor beta [Danio rerio]
gi|190338736|gb|AAI63106.1| Thyroid hormone receptor beta [Danio rerio]
Length = 386
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 121/240 (50%), Gaps = 31/240 (12%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+AVGM+ D V R+
Sbjct: 53 KGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLA 112
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR ++ E E V P T+ + +++I V++AH
Sbjct: 113 KR------------KLIEENRERRRREELQKTVWDRPEPTQEE------WEMIRVVTEAH 154
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
+ T +K LP S+P V + + + QF +TP++ R
Sbjct: 155 MA----TNAQGNHWKQKRKFLPEDIGSAPIVNAPEG---NKVDIEAFSQFTKIITPAITR 207
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQLE 236
VV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR QL+
Sbjct: 208 VVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLNGEMAVTRGQLK 267
>gi|356582318|ref|NP_001239150.1| thyroid hormone receptor beta isoform 2 [Gallus gallus]
gi|449273803|gb|EMC83189.1| Thyroid hormone receptor beta [Columba livia]
Length = 476
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 121/242 (50%), Gaps = 35/242 (14%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 143 KGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLA 202
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + T G +P P+ E + +++T + +Q
Sbjct: 203 KRKLIEENREKRRREELQKTIGHKPE------------PTDEEWELIKIVTEAHVATNAQ 250
Query: 117 AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
H + R+ + + + P V++PE E + QF +TP++
Sbjct: 251 GSHW------KQKRKFLPEDIGQAPI-VNAPEGGKVDLE--------AFSQFTKIITPAI 295
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQ 234
RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR Q
Sbjct: 296 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 355
Query: 235 LE 236
L+
Sbjct: 356 LK 357
>gi|213979|gb|AAA49657.1| thyroid hormone receptor beta B1 protein [Xenopus laevis]
Length = 373
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 121/241 (50%), Gaps = 33/241 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC VGM+ D V R+
Sbjct: 40 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCKTVGMATDLVLDDSKRLA 99
Query: 59 KRSR-ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQA 117
KR E + + + + + P P+ E + Q++T + +Q
Sbjct: 100 KRKLIEENREKRRKDEIQKSIVQRPE-----------PTQEEWELIQVVTEAHVATNAQG 148
Query: 118 HHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
H + R+ + + + P V++PE E + QF +TP++
Sbjct: 149 SHW------KQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSQFTKIITPAIT 193
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQL 235
RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR QL
Sbjct: 194 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL 253
Query: 236 E 236
+
Sbjct: 254 K 254
>gi|47825369|ref|NP_001001460.1| peroxisome proliferator-activated receptor gamma [Gallus gallus]
gi|326927823|ref|XP_003210088.1| PREDICTED: peroxisome proliferator-activated receptor gamma-like
[Meleagris gallopavo]
gi|8843931|gb|AAF80170.1|AF163811_1 peroxisome proliferator-activated receptor gamma [Gallus gallus]
gi|8953747|dbj|BAA98100.1| peroxisome proliferator-activated receptor [Gallus gallus]
gi|19110867|gb|AAL85323.1| peroxisome proliferator-activated receptor gamma [Gallus gallus]
Length = 475
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 27/244 (11%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVI-----LAVSQ 116
+E+ AE S ++ Q P S +L YD L ++
Sbjct: 188 KEK------------LLAEISSDID-----QLNPESADLRALAKHLYDSYIKSFPLTKAK 230
Query: 117 AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSP-EVASSTAECHESQRLWLWQQFAAHVTPS 175
A T + + ++ SL E + AS E ++ + ++Q+ +
Sbjct: 231 ARAILTGKTTDKSPFVIYDMNSLRMGEDQIKCKHASPLQEQNKEVAIRIFQRCQFRSVEA 290
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQQ 234
VQ + EFAK +PGF +L +DQ+ L+K G E+ ++ L + SDG ++TR+
Sbjct: 291 VQEITEFAKNIPGFVNLDLNDQVTLLKYGVHEIIYTLLASLMNKDGVLISDGQGFMTREF 350
Query: 235 LEVM 238
L+ +
Sbjct: 351 LKSL 354
>gi|218156226|dbj|BAH03345.1| retinoic acid receptor 1 [Eptatretus burgeri]
Length = 380
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 112/236 (47%), Gaps = 47/236 (19%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRD-SVRYGRVPKRS 61
+GFFRRSIQK + Y C RD C++ + RNRCQYCR ++C VGMS++ +VR R
Sbjct: 18 KGFFRRSIQKNMVYTCHRDKNCVINKNTRNRCQYCRLQRCFQVGMSKEAAVRNDR----- 72
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
++ + E V+ S EL+ D+I +++AH
Sbjct: 73 -----NKKKKEPPKSPEVE----------VECYTLSPELE-------DMINKINKAHQE- 109
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVE 181
+ P +S+AE L LW +F+ T + ++VE
Sbjct: 110 ----------------TFPSLCQLGKYTTNSSAEHRVQLDLNLWDKFSELSTKCIVKIVE 153
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFELWIGYVS-RLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K ++ I + R T + ++TFSDG+ + R Q+
Sbjct: 154 FAKRLPGFPSLTIADQITLLKAACLDILILRICLRYTPEHDTMTFSDGLTLNRTQM 209
>gi|189514197|gb|ACE07028.1| thyroid hormone receptor alpha [Xenopus (Silurana) tropicalis]
Length = 418
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 119/243 (48%), Gaps = 37/243 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 82 KGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDTKRVA 141
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + T P S E +++I V++
Sbjct: 142 KRKLIEENRERRRKEEMIKTLQQRPEPSKE--------------------EWELIRIVTE 181
Query: 117 AHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPS 175
AH S N + + RR P ++ +AS + L + +F +TP+
Sbjct: 182 AHRSTNAQGSHWKQRR------KFLPEDIGQSPMASMPD--GDKVDLEAFSEFTKIITPA 233
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQ 233
+ RVV+FAK++P F +L +DQ+IL+K E+ + R DS +LT S M V R+
Sbjct: 234 ITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEMAVKRE 293
Query: 234 QLE 236
QL+
Sbjct: 294 QLK 296
>gi|147906631|ref|NP_001081250.1| thyroid hormone receptor beta-B [Xenopus laevis]
gi|135715|sp|P18119.1|THBB_XENLA RecName: Full=Thyroid hormone receptor beta-B; Short=TRbetaB;
AltName: Full=Nuclear receptor subfamily 1 group A
member 2-B
gi|213981|gb|AAA49658.1| thyroid hormone receptor beta B2 protein [Xenopus laevis]
Length = 414
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 121/241 (50%), Gaps = 33/241 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC VGM+ D V R+
Sbjct: 81 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCKTVGMATDLVLDDSKRLA 140
Query: 59 KRSR-ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQA 117
KR E + + + + + P P+ E + Q++T + +Q
Sbjct: 141 KRKLIEENREKRRKDEIQKSIVQRPE-----------PTQEEWELIQVVTEAHVATNAQG 189
Query: 118 HHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
H + R+ + + + P V++PE E + QF +TP++
Sbjct: 190 SHW------KQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSQFTKIITPAIT 234
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQL 235
RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR QL
Sbjct: 235 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL 294
Query: 236 E 236
+
Sbjct: 295 K 295
>gi|146760614|gb|ABQ44495.1| retinoic acid receptor gamma 1 [Oryzias latipes]
Length = 259
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 97/207 (46%), Gaps = 47/207 (22%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 98 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKD 157
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ + P S E +G ++ L + VS+AH
Sbjct: 158 VKEEMVL------------PESYELSGELEEL----------------VNKVSKAHQET- 188
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 189 -----------------FPSLCQLGKYTTNSSSDHRVQLDLGLWDKFSELSTKCIIKIVE 231
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFEL 208
FAKR+PGF L+ DQ+ L+K ++
Sbjct: 232 FAKRLPGFTTLTIADQITLLKSACLDI 258
>gi|366984666|gb|AEX09237.1| peroxisome proliferator-activated receptor gamma [Podarcis siculus]
Length = 461
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 123/250 (49%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 131 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 188
Query: 62 RERSDSETGS--TRVSTTGAE--PPSSLETAGPVQSLP----------SSTELDTKQLLT 107
+E+ +E S +++ A+ + L ++S P + D +
Sbjct: 189 KEKLLAEISSDIDQLNPESADLRALAKLLYDSYIKSFPLTKAKARAILTGKATDKSPFVI 248
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ C++ L P + + EVA + ++Q+
Sbjct: 249 YDMNSLKMGEDQIKCKH--------------LTPMQEQNKEVA-----------IRIFQR 283
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
+VQ + EFAK +PGF +L +DQ+ L+K G E+ ++ + + S+G
Sbjct: 284 CQFRSVEAVQEITEFAKNIPGFVNLDLNDQVTLLKYGVHEIIYTLLASMMNKDGVLISNG 343
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 344 QGFMTREFLK 353
>gi|348562377|ref|XP_003466987.1| PREDICTED: retinoic acid receptor alpha-like isoform 1 [Cavia
porcellus]
Length = 459
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 109/235 (46%), Gaps = 48/235 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SV
Sbjct: 106 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESV---------- 155
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
R+D V + +L P EL I V +AH
Sbjct: 156 -RNDRNKKKKEVPKPESSESCTLT--------PEVGEL----------IEKVRKAHQE-- 194
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P ++++E S + LW +F+ T + + VEF
Sbjct: 195 ---------------TFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEF 239
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
AK++PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 240 AKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 294
>gi|26344309|dbj|BAC35811.1| unnamed protein product [Mus musculus]
Length = 381
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RER 64
++R
Sbjct: 184 KQR 186
>gi|161339211|gb|AAT08962.2| PHR3 [Plodia interpunctella]
Length = 539
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 112/264 (42%), Gaps = 50/264 (18%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSR------------- 49
+GFFRRS + Y+C R+ C+V R+NRNRCQYCR +KCL +GMSR
Sbjct: 125 KGFFRRSQSTVVNYQCPRNKACVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 184
Query: 50 ----DSVRYGRVPKRSR----------------ERSDSETGSTRVSTTGAEPPSSLETAG 89
D VRY + R + SD G A P SS
Sbjct: 185 EKVEDEVRYHKAQMRVQIDAAPDSVYDAQQQTPSSSDQFHGHYNGYPGYASPLSSYGYNN 244
Query: 90 PVQSLPSSTELDTKQL--------LTYDVILAVSQAHHSNCEYTE--EG--TRRLVRKPV 137
+LPS QL + Y Q + ++ EG ++ LV+
Sbjct: 245 GAPTLPSHMCGFHPQLRDKLPNDYVHYTTTYEPKQLGDLDADFISKLEGDISKVLVKSLA 304
Query: 138 -----SLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDL 192
+ P E P S + +W A +T +Q ++EFAK +PGF L
Sbjct: 305 EGHANTNPKLEYIKPHDVSKVLFYYSMTYEEMWLDCADKLTAMIQNIIEFAKLIPGFMKL 364
Query: 193 SQDDQLILIKMGFFELWIGYVSRL 216
+QDDQ++L+K G FEL I +SRL
Sbjct: 365 TQDDQILLLKSGSFELAIVRLSRL 388
>gi|169743245|gb|ACA66244.1| thyroid hormone receptor beta isoform 1 [Oryctolagus cuniculus]
Length = 456
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 123 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 182
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +D+I V++
Sbjct: 183 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WDLIKTVTE 222
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 223 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 273
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R DS +LT + M VTR
Sbjct: 274 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTR 333
Query: 233 QQLE 236
QL+
Sbjct: 334 GQLK 337
>gi|88697726|gb|ABD48808.1| thyroid hormone receptor beta [Alligator mississippiensis]
Length = 369
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 121/242 (50%), Gaps = 35/242 (14%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 36 KGFFRRTIQKNLHPTYSCKYEGKCVINKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLA 95
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + T G +P P+ E + +++T + +Q
Sbjct: 96 KRKLIEENREKRRREELQKTIGHKPE------------PTDEEWELIKIVTEAHVATNAQ 143
Query: 117 AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
H + R+ + + + P V++PE E + QF +TP++
Sbjct: 144 GSHW------KQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSQFTKIITPAI 188
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQ 234
RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR Q
Sbjct: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
Query: 235 LE 236
L+
Sbjct: 249 LK 250
>gi|6094474|sp|Q91279.1|THB_PAROL RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear
receptor subfamily 1 group A member 2
gi|639677|dbj|BAA08201.1| thyroid hormone receptor beta [Paralichthys olivaceus]
Length = 395
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 122/242 (50%), Gaps = 26/242 (10%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+AVGM+ D V
Sbjct: 53 KGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLA 112
Query: 61 SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHS 120
R+ + R LE P+ E +D+I V++AH +
Sbjct: 113 KRKLIEENRERRRKEELQKTVWDRLE--------PTQEE--------WDLIRMVTEAHMA 156
Query: 121 NCEYTEEGTRRLVRKPVSLPPSEVSSPEVA--SSTAECHESQRLWL--WQQFAAHVTPSV 176
++ RK +S + PE +S A E ++ + + QF +TP++
Sbjct: 157 TNAQGNHWKQK--RKFLSAAGVKEDKPEEIGQASMANTPEGNKVDIEAFSQFTKIITPAI 214
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQ 234
RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR Q
Sbjct: 215 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 274
Query: 235 LE 236
L+
Sbjct: 275 LK 276
>gi|224045376|ref|XP_002197349.1| PREDICTED: thyroid hormone receptor beta [Taeniopygia guttata]
Length = 369
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 121/242 (50%), Gaps = 35/242 (14%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 36 KGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLA 95
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + T G +P P+ E + +++T + +Q
Sbjct: 96 KRKLIEENREKRRREELQKTIGHKPE------------PTDEEWELIKIVTEAHVATNAQ 143
Query: 117 AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
H + R+ + + + P V++PE E + QF +TP++
Sbjct: 144 GSHW------KQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSQFTKIITPAI 188
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQ 234
RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR Q
Sbjct: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
Query: 235 LE 236
L+
Sbjct: 249 LK 250
>gi|268559752|ref|XP_002646063.1| C. briggsae CBR-NHR-85 protein [Caenorhabditis briggsae]
Length = 524
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+++ YR C R CL++R NRNRCQ CR KKCLAVGMSRD+VR+GRVPKR
Sbjct: 138 KGFFRRSIQQKLTYRACTRVEDCLILRNNRNRCQCCRLKKCLAVGMSRDAVRFGRVPKRE 197
Query: 62 RERSDSETGSTRVST 76
+ R E T V +
Sbjct: 198 KARMFEEMQKTNVQS 212
>gi|326921993|ref|XP_003207237.1| PREDICTED: thyroid hormone receptor beta-like [Meleagris gallopavo]
gi|56405103|sp|P68305.1|THB_CAIMO RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear
receptor subfamily 1 group A member 2
gi|56405104|sp|P68306.1|THB_CHICK RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear
receptor subfamily 1 group A member 2
gi|63821|emb|CAA35544.1| unnamed protein product [Gallus gallus]
gi|929028|emb|CAA89020.1| beta-thyroid hormone receptor [Cairina moschata]
gi|1107566|emb|CAA90566.1| beta-thyroid hormone receptor [Gallus gallus]
gi|1587178|prf||2206306A beta thyroid hormone receptor
Length = 369
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 121/242 (50%), Gaps = 35/242 (14%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 36 KGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLA 95
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + T G +P P+ E + +++T + +Q
Sbjct: 96 KRKLIEENREKRRREELQKTIGHKPE------------PTDEEWELIKIVTEAHVATNAQ 143
Query: 117 AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
H + R+ + + + P V++PE E + QF +TP++
Sbjct: 144 GSHW------KQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSQFTKIITPAI 188
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQ 234
RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR Q
Sbjct: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
Query: 235 LE 236
L+
Sbjct: 249 LK 250
>gi|695709|emb|CAA55014.1| Rev-erb-Beta2 [Rattus norvegicus]
gi|149040002|gb|EDL94086.1| nuclear receptor subfamily 1, group D, member 2, isoform CRA_b
[Rattus norvegicus]
Length = 383
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RER 64
++R
Sbjct: 184 KQR 186
>gi|410921388|ref|XP_003974165.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like [Takifugu
rubripes]
Length = 462
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + +CL+ + RNRCQYCR++KCLA+GM R++V+ R +R R
Sbjct: 159 KGFFKRTVRKDLTYTCRDNKECLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGR 216
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER DSE S T+G + +P D IL A
Sbjct: 217 ERGDSEVES---------------TSGFNEDMP------------VDKILDAELAVEPKT 249
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E EG +P + + P T C + + Q F +VE+
Sbjct: 250 ETYNEG----------IPSNSTNDP----VTNICQAADK----QLFT---------LVEW 282
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F +L DDQ+IL++ G+ EL I S +T + + G++V R
Sbjct: 283 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHR 334
>gi|50539758|ref|NP_001002345.1| retinoic acid receptor RXR-gamma-B [Danio rerio]
gi|82200328|sp|Q6DHP9.1|RXRGB_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-B;
AltName: Full=Retinoid X receptor gamma-B
gi|49902731|gb|AAH75918.1| Zgc:92183 [Danio rerio]
gi|124054092|gb|ABM89230.1| retinoid X receptor gamma b [Danio rerio]
Length = 452
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 107/232 (46%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C +CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 149 KGFFKRTIRKDLTYTCRDIKECLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 206
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E+SD+E +T S PV + D L+V +
Sbjct: 207 EKSDTEVETT----------SRFNEDMPVDKI-------------LDAELSVEPKTET-- 241
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
YTE PV T CH + + Q F +VE+
Sbjct: 242 -YTESSPSNSTNDPV---------------TNICHAADK----QLFT---------LVEW 272
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL DDQ+IL++ G+ EL I S +T + G++V R
Sbjct: 273 AKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSITVKDGILLGTGLHVHR 324
>gi|344286009|ref|XP_003414752.1| PREDICTED: thyroid hormone receptor alpha-like [Loxodonta africana]
Length = 410
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|14994041|gb|AAK76395.1| Rev-Erb beta 1 [Danio rerio]
Length = 404
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 55/63 (87%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL+ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 23 KGFFRRSIQQNIQYKKCLKTESCTIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 82
Query: 62 RER 64
++R
Sbjct: 83 KQR 85
>gi|215273960|sp|Q9PVE4.2|THB_DANRE RecName: Full=Thyroid hormone receptor beta; Short=TR-beta;
Short=TRb; AltName: Full=Nuclear receptor subfamily 1
group A member 2; AltName: Full=Thyroid hormone receptor
beta-1; Short=TRbeta1
Length = 395
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 127/246 (51%), Gaps = 34/246 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+AVGM+ D V R+
Sbjct: 53 KGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLA 112
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR ++ E E V P T+ + +++I V++AH
Sbjct: 113 KR------------KLIEENRERRRREELQKTVWDRPEPTQEE------WEMIRVVTEAH 154
Query: 119 HS-NCEYTEEGTRRLVRKPVSL---PPSEVSSPEVASSTAECHESQRLWL--WQQFAAHV 172
+ N + +R V + P ++ S + ++ E ++ + + QF +
Sbjct: 155 MATNAQGNHWKQKRKFLSAVGVKEAKPEDIGSAPIVNAP----EGNKVDIEAFSQFTKII 210
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M V
Sbjct: 211 TPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLNGEMAV 270
Query: 231 TRQQLE 236
TR QL+
Sbjct: 271 TRGQLK 276
>gi|55932|emb|CAA31237.1| c-erb-A thyroid hormone receptor [Rattus norvegicus]
Length = 398
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 62 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 121
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 122 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 158
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 159 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 210
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 211 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 270
Query: 231 TRQQLE 236
R+QL+
Sbjct: 271 KREQLK 276
>gi|318081977|gb|ADH95693.2| peroxisome proliferator activated receptor alpha [Megalobrama
amblycephala]
Length = 467
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 118/251 (47%), Gaps = 40/251 (15%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R +C + + NRN+CQYCRF+KCL+VGMS +++R+GR+P+
Sbjct: 122 KGFFRRTIRLKLEYDKCER--RCKIQKRNRNKCQYCRFQKCLSVGMSHNAIRFGRMPQSE 179
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R +E TG + A D K L + +A+ N
Sbjct: 180 KLRLKAEI------LTGERDVEDPQLA------------DQKTLAK-----QIYEAYMKN 216
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPE-------------VASSTAECHESQRLWLWQQF 168
+ R ++ S PP + E V SS ++ + ++
Sbjct: 217 FNMNKCKARAILTGKTSTPPFVIHDMETLQLAEQTLVAKLVGSSGGLLNKDAEVRIFHCC 276
Query: 169 AAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSDG 227
+V + EFAK VPGF +L +DQ+ L+K G E L+ S + D L
Sbjct: 277 QCTSVETVTELTEFAKSVPGFSNLDLNDQVTLLKYGVHEALFAMLASCMNKDGLLVAYGS 336
Query: 228 MYVTRQQLEVM 238
++TR+ L+ +
Sbjct: 337 GFITREFLKSL 347
>gi|50392|emb|CAA30577.1| thyroid hormone receptor [Mus musculus]
Length = 413
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|30017357|ref|NP_835161.1| thyroid hormone receptor alpha [Mus musculus]
gi|63079705|ref|NP_001017960.1| thyroid hormone receptor alpha isoform TRalpha1 [Rattus norvegicus]
gi|50388|emb|CAA30575.1| thyroid hormone receptor [Mus musculus]
gi|26347075|dbj|BAC37186.1| unnamed protein product [Mus musculus]
gi|148684218|gb|EDL16165.1| thyroid hormone receptor alpha, isoform CRA_b [Mus musculus]
gi|149054130|gb|EDM05947.1| thyroid hormone receptor alpha, isoform CRA_a [Rattus norvegicus]
gi|149054133|gb|EDM05950.1| thyroid hormone receptor alpha, isoform CRA_a [Rattus norvegicus]
Length = 410
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|291399720|ref|XP_002716263.1| PREDICTED: thyroid hormone receptor, beta (erythroblastic leukemia
viral (v-erb-a) oncogene homolog 2, avian) [Oryctolagus
cuniculus]
Length = 476
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 143 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 202
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +D+I V++
Sbjct: 203 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WDLIKTVTE 242
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 243 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 293
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R DS +LT + M VTR
Sbjct: 294 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTR 353
Query: 233 QQLE 236
QL+
Sbjct: 354 GQLK 357
>gi|76786382|gb|ABA54942.1| thyroid receptor alpha-2 [Carassius auratus]
Length = 378
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 124/246 (50%), Gaps = 44/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+++GM+ D V RV
Sbjct: 72 KGFFRRTIQKNLHPSYSCKYDSCCIIDKITRNQCQLCRFKKCISMGMAMDLVLDDSKRVA 131
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E V T P P+ +E +++I
Sbjct: 132 KRRLIEENRERKKKE---EMVKTLHTRPE------------PTVSE--------WELIRM 168
Query: 114 VSQAH-HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
V++AH H+N + +R LP SP S ++ L + +F +
Sbjct: 169 VTEAHRHTNAQGPHWKQKRKF-----LPEDIGQSPAPTSD----NDKVDLEAFSEFTKII 219
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 220 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAV 279
Query: 231 TRQQLE 236
+R+QL+
Sbjct: 280 SREQLK 285
>gi|348562369|ref|XP_003466983.1| PREDICTED: thyroid hormone receptor alpha-like isoform 3 [Cavia
porcellus]
Length = 451
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|148709885|gb|EDL41831.1| mCG52293 [Mus musculus]
Length = 362
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ +Y+ CL++ C ++R+NRNRCQ CRF+KCL+VGMSRD VR+GR+PKR
Sbjct: 17 KGFFRRSIQQNTQYKKCLKNENCSIMRVNRNRCQQCRFRKCLSVGMSRDVVRFGRIPKRE 76
Query: 62 RERSDSETGSTRVSTTGAEPPSSL--ETAGPVQSLPSSTELDTKQLLTYDVI 111
++R E S + + L +T +LP+ +L K L + I
Sbjct: 77 KQRMQIEMQSAMKTMMNTQFSGHLQNDTLAEQSALPAQEQLRPKSQLEQENI 128
>gi|55741799|ref|NP_999355.1| thyroid hormone receptor alpha [Sus scrofa]
gi|73966034|ref|XP_548137.2| PREDICTED: thyroid hormone receptor alpha isoform 1 [Canis lupus
familiaris]
gi|291405973|ref|XP_002719396.1| PREDICTED: thyroid hormone receptor, alpha (erythroblastic leukemia
viral (v-erb-a) oncogene homolog, avian) isoform 1
[Oryctolagus cuniculus]
gi|338711952|ref|XP_003362625.1| PREDICTED: thyroid hormone receptor alpha-like [Equus caballus]
gi|345805423|ref|XP_863301.2| PREDICTED: thyroid hormone receptor alpha isoform 5 [Canis lupus
familiaris]
gi|345805425|ref|XP_003435299.1| PREDICTED: thyroid hormone receptor alpha [Canis lupus familiaris]
gi|348562365|ref|XP_003466981.1| PREDICTED: thyroid hormone receptor alpha-like isoform 1 [Cavia
porcellus]
gi|354496825|ref|XP_003510525.1| PREDICTED: thyroid hormone receptor alpha-like isoform 1
[Cricetulus griseus]
gi|395826490|ref|XP_003786451.1| PREDICTED: thyroid hormone receptor alpha isoform 2 [Otolemur
garnettii]
gi|395826492|ref|XP_003786452.1| PREDICTED: thyroid hormone receptor alpha isoform 3 [Otolemur
garnettii]
gi|410980969|ref|XP_003996846.1| PREDICTED: thyroid hormone receptor alpha isoform 2 [Felis catus]
gi|4138568|emb|CAA06701.1| thyroid hormone receptor alpha 1 [Sus scrofa]
gi|431890672|gb|ELK01551.1| Thyroid hormone receptor alpha [Pteropus alecto]
Length = 410
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|226130|prf||1411299A thyroid hormone receptor alpha 1
Length = 410
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KRKQLK 288
>gi|1046295|gb|AAC59720.1| retinoid X receptor alpha [Danio rerio]
gi|1583308|prf||2120366C retinoid X receptor:ISOTYPE=alpha
Length = 441
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 107/232 (46%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + C + + RNRCQYCR++KCLA+GM R++V+ R +R R
Sbjct: 138 KGFFKRTIRKDLTYTCRDNKDCQIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGR 195
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ERSD+E S+ SS PV+ + D LAV +
Sbjct: 196 ERSDNEVDSS----------SSFNEEMPVEKI-------------LDAELAVEPKTEA-- 230
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y E PV T C + + Q F +VE+
Sbjct: 231 -YMESSMSNSTNDPV---------------TNICQAADK----QLFT---------LVEW 261
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL DDQ+IL++ G+ EL I S +T + + G++V R
Sbjct: 262 AKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHR 313
>gi|355724154|gb|AES08127.1| thyroid hormone receptor, alpha [Mustela putorius furo]
Length = 409
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 73 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 132
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 133 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 169
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 170 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 221
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 222 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 281
Query: 231 TRQQLE 236
R+QL+
Sbjct: 282 KREQLK 287
>gi|344276443|ref|XP_003410018.1| PREDICTED: peroxisome proliferator-activated receptor gamma-like
[Loxodonta africana]
Length = 486
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 124/241 (51%), Gaps = 25/241 (10%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 141 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 198
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGP-----VQSLPSSTELDTKQLLTYDVILAVSQ 116
+E+ +E S+ + E A ++S P T+ + +LT
Sbjct: 199 KEKLLAEI-SSDIDQLNPESADLRALAKHLYDSYIKSFP-LTKAKARAILTGKTTDKSPY 256
Query: 117 AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
+ + G ++ K ++ P + S EVA + ++Q H +V
Sbjct: 257 VIY-DMNSLMMGEDKINFKHIT--PLQEQSKEVA-----------IRIFQGCQFHSVEAV 302
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQQL 235
Q + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+ L
Sbjct: 303 QEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTREFL 362
Query: 236 E 236
+
Sbjct: 363 K 363
>gi|169743241|gb|ACA66242.1| thyroid hormone receptor alpha isoform 1 [Oryctolagus cuniculus]
Length = 410
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|47211198|emb|CAF95270.1| unnamed protein product [Tetraodon nigroviridis]
Length = 398
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 122/251 (48%), Gaps = 44/251 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R +C + + NRN+CQYCRF+KCL+VGMS +++R+GR+P+
Sbjct: 53 KGFFRRTIRLKLEYDKCER--RCKIQKKNRNKCQYCRFQKCLSVGMSHNAIRFGRMPQSE 110
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + +E V +P E D K L + +A+ N
Sbjct: 111 KLKLKAEM--VTVDKVVVDP----------------READQKTLAR-----QIYEAYLKN 147
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEV--------------ASSTAECHESQ-RLWLWQ 166
+ R ++ S PP + E ++ T + E++ R++
Sbjct: 148 FNMNKAKARSILSGKTSTPPFVIHDMETLQLAEQTLVAKMVSSAGTLKDREAEVRIFHCC 207
Query: 167 QFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFS 225
Q+ + +V + EFAK VPGF L +DQ+ L+K G +E L+ S + D L
Sbjct: 208 QYTS--VETVTELTEFAKSVPGFSSLDLNDQVTLLKYGVYEALFAMLASCMNKDGLLVAY 265
Query: 226 DGMYVTRQQLE 236
++TR+ L+
Sbjct: 266 GSGFITREFLK 276
>gi|216409680|dbj|BAH02277.1| thyroid hormone receptor alpha [Homo sapiens]
Length = 410
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHI 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPTFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|62526619|gb|AAX84684.1| thyroid receptor alpha-1 [Carassius auratus]
Length = 466
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 124/246 (50%), Gaps = 44/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+++GM+ D V RV
Sbjct: 72 KGFFRRTIQKNLHPSYSCKYDSCCIIDKITRNQCQLCRFKKCISMGMAMDLVLDDSKRVA 131
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E V T P P+ +E +++I
Sbjct: 132 KRRLIEENRERKKKE---EMVKTLHTRPE------------PTVSE--------WELIRM 168
Query: 114 VSQAH-HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
V++AH H+N + +R LP SP S ++ L + +F +
Sbjct: 169 VTEAHRHTNAQGPHWKQKRKF-----LPEDIGQSPAPTSD----NDKVDLEAFSEFTKII 219
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 220 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAV 279
Query: 231 TRQQLE 236
+R+QL+
Sbjct: 280 SREQLK 285
>gi|354496829|ref|XP_003510527.1| PREDICTED: thyroid hormone receptor alpha-like isoform 3
[Cricetulus griseus]
Length = 454
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|155369638|ref|NP_001094389.1| thyroid hormone receptor alpha [Ovis aries]
gi|2500920|sp|Q28570.1|THA_SHEEP RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear
receptor subfamily 1 group A member 1
gi|1136116|emb|CAA92650.1| thyroid hormone receptor alpha1 [Ovis aries]
Length = 410
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|185133653|ref|NP_001117032.1| peroxisome proliferator-activated receptor alpha [Salmo salar]
gi|89143253|emb|CAJ76702.1| peroxisome proliferator-activated receptor alpha [Salmo salar]
Length = 464
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 121/252 (48%), Gaps = 41/252 (16%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R +C + + NRN+CQYCRF+KCL+VGMS +++R+GR+P+
Sbjct: 118 KGFFRRTIRLKLEYDKCER--RCKIQKKNRNKCQYCRFQKCLSVGMSHNAIRFGRMPQSE 175
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + +E TG E P Q+ D K L + + +A+ N
Sbjct: 176 KLKLKAEI------LTGDR-----EVEDPQQA-------DQKTLARH-----IYEAYLKN 212
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVAS-----------STAECHESQRLWLWQQFAA 170
+ R ++ S PP + E TA H ++ + F
Sbjct: 213 FNMNKAKARTILTGKTSTPPFVIHDMETLQLAEQTLVAKMVGTAGSHLLEKEAEVRIFHC 272
Query: 171 HVTPSVQRV---VEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSD 226
SV+ V EFAK VPGF L +DQ+ L+K G +E L+ S + D L
Sbjct: 273 CQCTSVETVTELTEFAKSVPGFSSLDLNDQVTLLKYGVYEALFALLASCMNKDGLLVAYG 332
Query: 227 GMYVTRQQLEVM 238
++TR+ L+ +
Sbjct: 333 SGFITREFLKSL 344
>gi|410980971|ref|XP_003996847.1| PREDICTED: thyroid hormone receptor alpha isoform 3 [Felis catus]
Length = 460
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|390345461|ref|XP_784691.3| PREDICTED: ecdysone-induced protein 78C-like [Strongylocentrotus
purpuratus]
Length = 506
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 128/280 (45%), Gaps = 79/280 (28%)
Query: 3 QGFFRRSIQKQIEYRCLR-DGKCLVIRLNRNRCQYCRFKKCLAVGM-------------- 47
+GFFRRS +++ EY C +G C + R+NRNRCQ+CRFKKCLAVGM
Sbjct: 69 KGFFRRSSKREKEYTCRHGNGHCTIGRMNRNRCQHCRFKKCLAVGMRSKSLWNTPSRLGQ 128
Query: 48 --SRDS----------------VRYGRVPKRSRERSD----SETGST--RVSTTGAE--- 80
++DS VRYGRVP+R ++ S G+T R +T +E
Sbjct: 129 RRTKDSMPFWNFVGEHLTLVEAVRYGRVPQRGKKNGPVAGLSPGGATAMRKKSTDSEYGP 188
Query: 81 ----------PP-----SSLETAGPVQSLPSSTE--LDTKQLLTYDVILAVSQAHHSNCE 123
PP S+ + P LP + L KQ Y+++ +S A C
Sbjct: 189 SDTDDILQPFPPMPVNGSTFDLTPPHSMLPMGADPSLHLKQAEMYELVNTISYAFRMTCL 248
Query: 124 YTEEGTRRLVRKPVSLP-------PSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
YT P S P P E + S + + W Q A + +V
Sbjct: 249 YT----------PSSAPFLRGFTFPQENQNSHFPSEDMDARGRNQ---WVQLAHILDQAV 295
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL 216
VEFAK +PGF +L+QDDQL+L+K FFE+W+ ++ L
Sbjct: 296 SGQVEFAKAIPGFRNLTQDDQLLLLKSSFFEMWVVRIAPL 335
>gi|169159129|dbj|BAG12083.1| thyroid hormone receptor beta [Thunnus orientalis]
Length = 395
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 32/245 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+AVGM+ D V
Sbjct: 53 KGFFRRTIQKSLNPTYACKYEGKCIIDKVTRNQCQECRFKKCIAVGMATDLV-------- 104
Query: 61 SRERSDSETGSTR---VSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQA 117
DS+ + R L+ + P+ E +D+I V++A
Sbjct: 105 ---LDDSKRLAKRKLIEENRERRRKEELQKTAWDRLEPTQEE--------WDLIRMVTEA 153
Query: 118 HHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVA--SSTAECHESQRLWL--WQQFAAHVT 173
H + ++ RK +S ++ + PE +S + ++ + + QF +T
Sbjct: 154 HMATNAQGNHWKQK--RKFLSAAGAKETKPEDIGQASMVNTPDGNKVDIEAFSQFTKIIT 211
Query: 174 PSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVT 231
P++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VT
Sbjct: 212 PAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVT 271
Query: 232 RQQLE 236
R QL+
Sbjct: 272 RGQLK 276
>gi|50386|emb|CAA36241.1| unnamed protein product [Mus musculus]
Length = 410
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 120/246 (48%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNHCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|348562367|ref|XP_003466982.1| PREDICTED: thyroid hormone receptor alpha-like isoform 2 [Cavia
porcellus]
Length = 490
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|291405977|ref|XP_002719397.1| PREDICTED: thyroid hormone receptor, alpha (erythroblastic leukemia
viral (v-erb-a) oncogene homolog, avian) isoform 2
[Oryctolagus cuniculus]
Length = 491
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|410980967|ref|XP_003996845.1| PREDICTED: thyroid hormone receptor alpha isoform 1 [Felis catus]
Length = 499
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|301779113|ref|XP_002924975.1| PREDICTED: thyroid hormone receptor alpha-like [Ailuropoda
melanoleuca]
Length = 507
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|338711954|ref|XP_003362626.1| PREDICTED: thyroid hormone receptor alpha-like [Equus caballus]
Length = 481
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|40806160|ref|NP_955366.1| thyroid hormone receptor alpha isoform 1 [Homo sapiens]
gi|397522890|ref|XP_003831481.1| PREDICTED: thyroid hormone receptor alpha isoform 2 [Pan paniscus]
gi|426348357|ref|XP_004041803.1| PREDICTED: thyroid hormone receptor alpha isoform 5 [Gorilla
gorilla gorilla]
gi|29879|emb|CAA38749.1| thyriod hormone receptor alpha 1, THRA1 [Homo sapiens]
gi|339663|gb|AAA66021.1| thyroid receptor alpha-1 [Homo sapiens]
gi|14250764|gb|AAH08851.1| THRA protein [Homo sapiens]
gi|49456785|emb|CAG46713.1| THRA [Homo sapiens]
gi|119581037|gb|EAW60633.1| thyroid hormone receptor, alpha (erythroblastic leukemia viral
(v-erb-a) oncogene homolog, avian), isoform CRA_b [Homo
sapiens]
gi|325495529|gb|ADZ17370.1| thyroid normone nuclear receptor alpha variant 1 [Homo sapiens]
gi|380816024|gb|AFE79886.1| thyroid hormone receptor alpha isoform 1 [Macaca mulatta]
gi|383410383|gb|AFH28405.1| thyroid hormone receptor alpha isoform 1 [Macaca mulatta]
gi|384939454|gb|AFI33332.1| thyroid hormone receptor alpha isoform 1 [Macaca mulatta]
gi|410215242|gb|JAA04840.1| thyroid hormone receptor, alpha (erythroblastic leukemia viral
(v-erb-a) oncogene homolog, avian) [Pan troglodytes]
gi|410262438|gb|JAA19185.1| thyroid hormone receptor, alpha (erythroblastic leukemia viral
(v-erb-a) oncogene homolog, avian) [Pan troglodytes]
gi|410306376|gb|JAA31788.1| thyroid hormone receptor, alpha (erythroblastic leukemia viral
(v-erb-a) oncogene homolog, avian) [Pan troglodytes]
gi|410353611|gb|JAA43409.1| thyroid hormone receptor, alpha (erythroblastic leukemia viral
(v-erb-a) oncogene homolog, avian) [Pan troglodytes]
Length = 410
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHI 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|6448631|emb|CAB61263.1| peroxisome proliferator activated receptor gamma [Trachemys scripta
elegans]
Length = 393
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 125/252 (49%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 56 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 113
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 114 KEKLLAEISSDIDQLNPESADLRALAKNLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 173
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + NC++ + P + + EVA + ++Q+
Sbjct: 174 YDMNSLMMGEDQINCKH--------------VTPLQEQNKEVA-----------IRIFQR 208
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
+VQ + EFAK +PGF + +DQ+ L+K G E+ ++ L + S+G
Sbjct: 209 CQFRSVEAVQEITEFAKSIPGFVNPDLNDQVTLLKYGVHEIIYTLLASLMNKDGVLISNG 268
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 269 QGFMTREFLKSL 280
>gi|207301|gb|AAA42238.1| thyroid hormone receptor [Rattus norvegicus]
Length = 410
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMTV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KRKQLK 288
>gi|380783425|gb|AFE63588.1| thyroid hormone receptor alpha isoform 3 [Macaca mulatta]
gi|384939450|gb|AFI33330.1| thyroid hormone receptor alpha isoform 3 [Macaca mulatta]
Length = 451
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHI 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|60834865|gb|AAX37114.1| unknown [synthetic construct]
Length = 411
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHI 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|24308535|ref|NP_571471.1| thyroid hormone receptor alpha-A [Danio rerio]
gi|6094469|sp|Q98867.1|THAA_DANRE RecName: Full=Thyroid hormone receptor alpha-A; Short=zTRalpha-A;
AltName: Full=Nuclear receptor subfamily 1 group A
member 1-A; AltName: Full=Thyroid hormone receptor
alpha-1; Short=TRalpha-1
gi|1314773|gb|AAA99811.1| thyroid hormone receptor alpha 1 [Danio rerio]
gi|66911171|gb|AAH96778.1| Thyroid hormone receptor alpha a [Danio rerio]
gi|182889166|gb|AAI64729.1| Thraa protein [Danio rerio]
Length = 427
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 121/241 (50%), Gaps = 34/241 (14%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRF+KC++VGM+ D V RV
Sbjct: 78 KGFFRRTIQKNLHPSYSCKYDSCCIIDKITRNQCQLCRFRKCISVGMAMDLVLDDSKRVA 137
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR R+ E E + + P T + +++I V++AH
Sbjct: 138 KR------------RLIEENREKRKKEEIVKTLHNRPEPT------VSEWELIRMVTEAH 179
Query: 119 -HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
H+N + +R LP SP S ++ L + +F +TP++
Sbjct: 180 RHTNAQGPHWKQKRKF-----LPEDIGQSPAPTSD----NDKVDLEAFSEFTKIITPAIT 230
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQL 235
RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V+R+QL
Sbjct: 231 RVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVSREQL 290
Query: 236 E 236
+
Sbjct: 291 K 291
>gi|284018143|sp|P63058.2|THA_MOUSE RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear
receptor subfamily 1 group A member 1; AltName:
Full=c-erbA-1; AltName: Full=c-erbA-alpha
gi|28386179|gb|AAH46795.1| Thra protein [Mus musculus]
gi|148684217|gb|EDL16164.1| thyroid hormone receptor alpha, isoform CRA_a [Mus musculus]
Length = 492
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|13124576|sp|O97716.1|THA_PIG RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear
receptor subfamily 1 group A member 1; AltName:
Full=c-erbA-1; AltName: Full=c-erbA-alpha
gi|4138570|emb|CAA06702.1| thyroid hormone receptor alpha 2 [Sus scrofa]
Length = 506
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|204048|gb|AAA41121.1| c-erbA-alpha-2-related protein [Rattus norvegicus]
Length = 492
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|57391|emb|CAA30307.1| unnamed protein product [Rattus rattus]
Length = 454
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 36 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 95
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 96 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 132
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 133 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 184
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 185 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 244
Query: 231 TRQQLE 236
R+QL+
Sbjct: 245 KREQLK 250
>gi|63079703|ref|NP_112396.2| thyroid hormone receptor alpha [Rattus norvegicus]
gi|149054131|gb|EDM05948.1| thyroid hormone receptor alpha, isoform CRA_b [Rattus norvegicus]
Length = 492
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|50390|emb|CAA30576.1| thyroid hormone receptor [Mus musculus]
Length = 452
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|46811848|gb|AAT02178.1| thyroid hormone receptor beta [Pimephales promelas]
Length = 378
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 127/246 (51%), Gaps = 34/246 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+AVGM+ D V R+
Sbjct: 36 KGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLA 95
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR ++ E E V P T+ + +++I V++AH
Sbjct: 96 KR------------KLIEENRERRRREEMQKTVWDRPEPTQEE------WELIRVVTEAH 137
Query: 119 HS-NCEYTEEGTRRLVRKPVSL---PPSEVSSPEVASSTAECHESQRLWL--WQQFAAHV 172
+ N + +R V + P ++ S + ++ E ++ + + QF +
Sbjct: 138 MATNAQGNHWKQKRKFLSAVGVKEAKPEDIGSAPIVNAP----EGSKVDIEAFSQFTKII 193
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M V
Sbjct: 194 TPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAV 253
Query: 231 TRQQLE 236
TR QL+
Sbjct: 254 TRGQLK 259
>gi|52001262|sp|P63059.1|THA_RAT RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear
receptor subfamily 1 group A member 1; AltName:
Full=c-erbA-1; AltName: Full=c-erbA-alpha
Length = 492
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|410306378|gb|JAA31789.1| thyroid hormone receptor, alpha (erythroblastic leukemia viral
(v-erb-a) oncogene homolog, avian) [Pan troglodytes]
Length = 451
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHI 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|395826488|ref|XP_003786450.1| PREDICTED: thyroid hormone receptor alpha isoform 1 [Otolemur
garnettii]
Length = 491
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|355754119|gb|EHH58084.1| Nuclear receptor subfamily 1 group A member 1, partial [Macaca
fascicularis]
Length = 327
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHI 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|149723860|ref|XP_001500679.1| PREDICTED: thyroid hormone receptor alpha-like isoform 1 [Equus
caballus]
Length = 520
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|114052506|ref|NP_001039794.1| thyroid hormone receptor alpha [Bos taurus]
gi|92096602|gb|AAI14726.1| Thyroid hormone receptor, alpha (erythroblastic leukemia viral
(v-erb-a) oncogene homolog, avian) [Bos taurus]
gi|296476351|tpg|DAA18466.1| TPA: thyroid hormone receptor, alpha [Bos taurus]
gi|440904252|gb|ELR54791.1| Thyroid hormone receptor alpha [Bos grunniens mutus]
Length = 511
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|327283073|ref|XP_003226266.1| PREDICTED: thyroid hormone receptor beta-like [Anolis carolinensis]
Length = 474
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 121/242 (50%), Gaps = 35/242 (14%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 141 KGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 200
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + T G +P P+ E + +++T + +Q
Sbjct: 201 KRKLIEENREKRRREELQKTVGMKPE------------PTDEEWELIKIVTEAHVATNAQ 248
Query: 117 AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
H + R+ + + + P V++PE E + QF +TP++
Sbjct: 249 GSHW------KQKRKFLPEDIGQAPI-VNAPEGGKVDLE--------AFSQFTKIITPAI 293
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQ 234
RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + + VTR Q
Sbjct: 294 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEIAVTRGQ 353
Query: 235 LE 236
L+
Sbjct: 354 LK 355
>gi|169743243|gb|ACA66243.1| thyroid hormone receptor alpha isoform 2 [Oryctolagus cuniculus]
Length = 451
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|60813032|gb|AAX36243.1| thyroid hormone receptor alpha [synthetic construct]
Length = 451
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHI 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|41282088|ref|NP_571292.2| retinoic acid receptor RXR-gamma-A [Danio rerio]
gi|52788288|sp|Q90416.2|RXRGA_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-A;
AltName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Retinoid X receptor alpha; AltName: Full=Retinoid X
receptor gamma-A
gi|37590367|gb|AAH59576.1| Retinoid x receptor, gamma a [Danio rerio]
Length = 441
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 107/232 (46%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + C + + RNRCQYCR++KCLA+GM R++V+ R +R R
Sbjct: 138 KGFFKRTIRKDLTYTCRDNKDCQIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGR 195
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ERSD+E S+ SS PV+ + D LAV +
Sbjct: 196 ERSDNEVDSS----------SSFNEEMPVEKI-------------LDAELAVEPKTEA-- 230
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y E PV T C + + Q F +VE+
Sbjct: 231 -YMESSMSNSTNDPV---------------TNICQAADK----QLFT---------LVEW 261
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL DDQ+IL++ G+ EL I S +T + + G++V R
Sbjct: 262 AKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHR 313
>gi|380783427|gb|AFE63589.1| thyroid hormone receptor alpha isoform 2 [Macaca mulatta]
gi|383410385|gb|AFH28406.1| thyroid hormone receptor alpha isoform 2 [Macaca mulatta]
gi|384939452|gb|AFI33331.1| thyroid hormone receptor alpha isoform 2 [Macaca mulatta]
Length = 490
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHI 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|62088272|dbj|BAD92583.1| thyroid hormone receptor, alpha isoform 1 variant [Homo sapiens]
Length = 397
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 121/245 (49%), Gaps = 41/245 (16%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 61 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 120
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 121 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHI 157
Query: 114 VSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVT 173
++AH S +G+ R+ LP SP V+ + L + +F +T
Sbjct: 158 ATEAHRST---NAQGSHWKQRRKF-LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKIIT 210
Query: 174 PSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVT 231
P++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 211 PAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVK 270
Query: 232 RQQLE 236
R+QL+
Sbjct: 271 REQLK 275
>gi|385843192|gb|AFI80893.1| PPARalpha, partial [Oncorhynchus nerka]
Length = 452
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 121/252 (48%), Gaps = 41/252 (16%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R +C + + NRN+CQYCRF+KCL+VGMS +++R+GR+P+
Sbjct: 118 KGFFRRTIRLKLEYDKCER--RCKIQKKNRNKCQYCRFQKCLSVGMSHNAIRFGRMPQSE 175
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + +E TG E P Q+ D K L + + +A+ N
Sbjct: 176 KLKLKAEI------LTGDR-----EVEDPQQA-------DQKTLARH-----IYEAYLKN 212
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVAS-----------STAECHESQRLWLWQQFAA 170
+ R ++ S PP + E TA H ++ + F
Sbjct: 213 FNMNKAKARTILTGKTSTPPFVIHDMETLQLAEQTLVAKMVGTAGGHLLEKEAEVRIFHC 272
Query: 171 HVTPSVQRV---VEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSD 226
SV+ V EFAK VPGF L +DQ+ L+K G +E L+ S + D L
Sbjct: 273 CQCTSVETVTELTEFAKSVPGFSSLDLNDQVTLLKYGVYEALFALLASCMNKDGLLVAYG 332
Query: 227 GMYVTRQQLEVM 238
++TR+ L+ +
Sbjct: 333 SGFITREFLKSL 344
>gi|2661447|emb|CAA05768.1| retinoic acid receptor alpha2 [Rattus norvegicus]
Length = 307
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 107/236 (45%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SV
Sbjct: 97 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESV---------- 146
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
R+D +L P EL I V +AH
Sbjct: 147 -RNDRNKKKKEAPKPECSESYTLT--------PEVGEL----------IEKVRKAHQE-- 185
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P ++++E S + LW +F+ T + + VEF
Sbjct: 186 ---------------TFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEF 230
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AK++PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 231 AKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 286
>gi|20127452|ref|NP_003241.2| thyroid hormone receptor alpha isoform 2 [Homo sapiens]
gi|300116309|ref|NP_001177848.1| thyroid hormone receptor alpha isoform 2 [Homo sapiens]
gi|397522888|ref|XP_003831480.1| PREDICTED: thyroid hormone receptor alpha isoform 1 [Pan paniscus]
gi|426348349|ref|XP_004041799.1| PREDICTED: thyroid hormone receptor alpha isoform 1 [Gorilla
gorilla gorilla]
gi|426348351|ref|XP_004041800.1| PREDICTED: thyroid hormone receptor alpha isoform 2 [Gorilla
gorilla gorilla]
gi|426348353|ref|XP_004041801.1| PREDICTED: thyroid hormone receptor alpha isoform 3 [Gorilla
gorilla gorilla]
gi|135705|sp|P10827.1|THA_HUMAN RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear
receptor subfamily 1 group A member 1; AltName:
Full=V-erbA-related protein 7; Short=EAR-7; AltName:
Full=c-erbA-1; AltName: Full=c-erbA-alpha
gi|339665|gb|AAA61176.1| thyroid hormone receptor [Homo sapiens]
gi|537522|gb|AAA35783.1| triiodothyronine receptor [Homo sapiens]
gi|12653001|gb|AAH00261.1| Thyroid hormone receptor, alpha (erythroblastic leukemia viral
(v-erb-a) oncogene homolog, avian) [Homo sapiens]
gi|12803777|gb|AAH02728.1| Thyroid hormone receptor, alpha (erythroblastic leukemia viral
(v-erb-a) oncogene homolog, avian) [Homo sapiens]
gi|119581036|gb|EAW60632.1| thyroid hormone receptor, alpha (erythroblastic leukemia viral
(v-erb-a) oncogene homolog, avian), isoform CRA_a [Homo
sapiens]
gi|123983394|gb|ABM83438.1| thyroid hormone receptor, alpha (erythroblastic leukemia viral
(v-erb-a) oncogene homolog, avian) [synthetic construct]
gi|123998101|gb|ABM86652.1| thyroid hormone receptor, alpha (erythroblastic leukemia viral
(v-erb-a) oncogene homolog, avian) [synthetic construct]
gi|158254492|dbj|BAF83219.1| unnamed protein product [Homo sapiens]
gi|224487813|dbj|BAH24141.1| thyroid hormone receptor, alpha [synthetic construct]
gi|410215238|gb|JAA04838.1| thyroid hormone receptor, alpha (erythroblastic leukemia viral
(v-erb-a) oncogene homolog, avian) [Pan troglodytes]
gi|410306372|gb|JAA31786.1| thyroid hormone receptor, alpha (erythroblastic leukemia viral
(v-erb-a) oncogene homolog, avian) [Pan troglodytes]
Length = 490
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHI 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|158962474|dbj|BAF91724.1| retinoid X receptor [Ornithodoros moubata]
Length = 453
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 110/233 (47%), Gaps = 32/233 (13%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C D C++ + RNRCQYCR++KCL+ GM R++V+ R +R++
Sbjct: 125 KGFFKRTVRKDLTYACREDRNCVIDKRQRNRCQYCRYQKCLSCGMKREAVQEER--QRTK 182
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER ++E ST S+ AE P ++ P + +L+ L S
Sbjct: 183 ERGENEVEST--SSGQAEMPIDRILEAELRVEPKAEDLEVNAL-------------PSRG 227
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ RL P P PE T C + R + ++VE+
Sbjct: 228 APAPQPVHRLPFVPQVKPADLTMPPEKDPVTNICQAADR-------------QLHQLVEW 274
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AK +P F +L +D+++L+K G+ EL I S + + + G+ V R
Sbjct: 275 AKHIPHFTELPLEDRMVLLKAGWNELLIAAFSHRSMXVKDGIVLATGLVVQRH 327
>gi|300116307|ref|NP_001177847.1| thyroid hormone receptor alpha isoform 3 [Homo sapiens]
gi|426348355|ref|XP_004041802.1| PREDICTED: thyroid hormone receptor alpha isoform 4 [Gorilla
gorilla gorilla]
gi|23243455|gb|AAH35137.1| THRA protein [Homo sapiens]
gi|119581038|gb|EAW60634.1| thyroid hormone receptor, alpha (erythroblastic leukemia viral
(v-erb-a) oncogene homolog, avian), isoform CRA_c [Homo
sapiens]
Length = 451
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHI 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|354496827|ref|XP_003510526.1| PREDICTED: thyroid hormone receptor alpha-like isoform 2
[Cricetulus griseus]
gi|344256923|gb|EGW13027.1| Thyroid hormone receptor alpha [Cricetulus griseus]
Length = 493
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|6094471|sp|Q91242.1|THAB_PAROL RecName: Full=Thyroid hormone receptor alpha-B; Short=THR-alpha-B;
AltName: Full=Nuclear receptor subfamily 1 group A
member 1-B
gi|416423|dbj|BAA03929.1| thyroid hormone receptor alpha B [Paralichthys olivaceus]
Length = 391
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 123/251 (49%), Gaps = 52/251 (20%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 54 KGFFRRTIQKNLHPSYSCKYDCCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 113
Query: 59 KR-----SRERSDSE----TGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYD 109
KR +RER E T R TGAE ++
Sbjct: 114 KRRLIEENRERRKKEEIVKTLQNRPEPTGAE---------------------------WE 146
Query: 110 VILAVSQAH-HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF 168
+I V++AH H+N + + +R LP SP +S + L + +F
Sbjct: 147 LIRMVTEAHRHTNAQGAQWKQKRKF-----LPDKIGQSPVAPTSDG---DKVDLEAFSEF 198
Query: 169 AAHVTPSVQRVVEFAKRVPGFCD-LSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFS 225
+TP++ RVV+FAK++P F + L +DQ+IL+K E+ + R +S +LT S
Sbjct: 199 TKIITPAITRVVDFAKKLPMFSEQLPCEDQIILLKGCCMEIMSLRAAMRYDPESETLTLS 258
Query: 226 DGMYVTRQQLE 236
M V R+QL+
Sbjct: 259 GEMAVKREQLK 269
>gi|33386556|emb|CAD62447.1| peroxisome proliferator-activated receptor alpha [Pleuronectes
platessa]
Length = 474
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 125/253 (49%), Gaps = 25/253 (9%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C +++ NRN+CQYCRF KCL+VGMS +++R+GR+P+
Sbjct: 110 KGFFRRTIRLKLEYDKCER--SCKILKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPQAE 167
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSS-------TELDTKQLLTYDVILAV 114
+ + +E+ AE P + V+ + + ++ K +LT
Sbjct: 168 KLKLKAESNMVEKE---AESPMLADHKILVRQIHDAYMKNFNMSKAKAKLILTGKTSKPP 224
Query: 115 SQAHHSNCEYTEEGT--RRLVRKPVSLPPSEVSSPEVASSTAECHESQ------RLWLWQ 166
H E T +V + P + S VA AEC E + RL+
Sbjct: 225 FIIHDMETFQLAERTLAAHMVNGDQAEPECGLQSRAVALD-AECGELEQREAEARLFFCC 283
Query: 167 QFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFS 225
Q + +V + EFAK VPGF L +DQ+ L+K G +E L+ S + D L
Sbjct: 284 QSTS--VETVTELTEFAKAVPGFQSLDLNDQVTLLKYGVYEALFTLLASCMNKDGLLVAR 341
Query: 226 DGMYVTRQQLEVM 238
G ++TR+ L+ +
Sbjct: 342 GGGFITREFLKSL 354
>gi|444518523|gb|ELV12209.1| Retinoic acid receptor RXR-alpha [Tupaia chinensis]
Length = 386
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 80 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 137
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R++SE EP SS PV+ + + LAV
Sbjct: 138 DRNESEV----------EPTSSANEDMPVEKI-------------LEAELAV-------- 166
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L PS + P T C + + Q F +VE+
Sbjct: 167 ---EPKTDTYVEANMGLSPSSPNDP----VTNICQAADK----QLFT---------LVEW 206
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKRVP F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 207 AKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 259
>gi|157278123|ref|NP_001098160.1| thyroid hormone receptor beta [Oryzias latipes]
gi|42794040|dbj|BAD11773.1| thyroid hormone receptor beta [Oryzias latipes]
Length = 378
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 125/245 (51%), Gaps = 32/245 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+AVGM+ D V R+
Sbjct: 36 KGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDGKRLA 95
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR L+ + P+ E +D+I V++AH
Sbjct: 96 KR----------KLIEENRERRRKEELQKTAWDRLEPTQEE--------WDLIRLVTEAH 137
Query: 119 HSNCEYTEEGTR-RLVRKPVSLPPSEVSSPE--VASSTAECHESQRLWL--WQQFAAHVT 173
+ +G+ + RK +S + + PE SS + ++ + + QF +T
Sbjct: 138 TTT---NAQGSHWKQKRKFLSQAGGKETKPEDFGQSSVVSSPDGNKVDIEAFSQFTKIIT 194
Query: 174 PSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVT 231
P++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VT
Sbjct: 195 PAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVT 254
Query: 232 RQQLE 236
R QL+
Sbjct: 255 RDQLK 259
>gi|62526621|gb|AAX84685.1| thyroid receptor beta [Carassius auratus]
Length = 395
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 127/246 (51%), Gaps = 34/246 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+AVGM+ D V R+
Sbjct: 53 KGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLA 112
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR ++ E E V P T+ + +++I V++AH
Sbjct: 113 KR------------KLIEENRERRRREEQQKTVWERPEPTQEE------WELIRGVTEAH 154
Query: 119 HS-NCEYTEEGTRRLVRKPVSL---PPSEVSSPEVASSTAECHESQRLWL--WQQFAAHV 172
+ N + +R V + P ++ S + ++ E ++ + + QF +
Sbjct: 155 MATNAQGNHWKQKRKFLSAVGVKEAKPEDIGSAPIINAP----EGSKVDIEAFSQFTKII 210
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M V
Sbjct: 211 TPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAV 270
Query: 231 TRQQLE 236
TR QL+
Sbjct: 271 TRGQLK 276
>gi|395540269|ref|XP_003772079.1| PREDICTED: thyroid hormone receptor beta [Sarcophilus harrisii]
Length = 474
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 125/244 (51%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 141 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 200
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + T G +P P+ E +++I V++
Sbjct: 201 KRKLIEENREKRRREELQKTIGHKPE------------PTDEE--------WELIRTVTE 240
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + QF +TP
Sbjct: 241 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSQFTKIITP 291
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 292 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 351
Query: 233 QQLE 236
QL+
Sbjct: 352 GQLK 355
>gi|62990125|ref|NP_571481.2| retinoic acid receptor alpha-A [Danio rerio]
gi|118573266|sp|Q90271.2|RARAA_DANRE RecName: Full=Retinoic acid receptor alpha-A; Short=RAR-alpha-A;
AltName: Full=Nuclear receptor subfamily 1 group B
member 1-A; AltName: Full=Retinoic acid receptor alpha;
Short=zRAR alpha; AltName: Full=Retinoic acid receptor
alpha-2.A; Short=RAR-alpha-2.A
gi|704370|gb|AAB32276.1| retinoic acid receptor alpha [Danio rerio]
gi|62531027|gb|AAH92692.1| Retinoic acid receptor, alpha a [Danio rerio]
Length = 444
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 109/240 (45%), Gaps = 56/240 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C R+ C++ ++ RNRCQYCR +KCL VGMS++SVR R
Sbjct: 96 KGFFRRSIQKNMVYTCHREKNCIINKVTRNRCQYCRLQKCLEVGMSKESVRNDR------ 149
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH--- 119
+ P TE T T +I V +AH
Sbjct: 150 -----------------------NKKKKEEKKPECTENYTLSPDTEQMIDRVRKAHQETF 186
Query: 120 -SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
S C+ + T + V+L LW +F+ T + +
Sbjct: 187 PSLCQLGKYTTSNSSERRVAL-------------------DVDLW--DKFSELSTKCIIK 225
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
VEFAK++PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 226 TVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 285
>gi|195067480|ref|XP_001996885.1| GH23579 [Drosophila grimshawi]
gi|193891546|gb|EDV90412.1| GH23579 [Drosophila grimshawi]
Length = 135
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 55/62 (88%), Gaps = 1/62 (1%)
Query: 4 GFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR +
Sbjct: 1 GFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREK 60
Query: 63 ER 64
R
Sbjct: 61 AR 62
>gi|90085555|dbj|BAE91518.1| unnamed protein product [Macaca fascicularis]
Length = 612
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHI 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|222088208|gb|ACM42164.1| peroxisome proliferator-activated receptor alpha [Ctenopharyngodon
idella]
Length = 208
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 108/221 (48%), Gaps = 48/221 (21%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+G FRR+I+ ++EY +C R+ C + + NRN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 14 KGLFRRTIRLKLEYDKCERN--CKIQKKNRNKCQYCRFRKCLAVGMSHNAIRFGRIPQSE 71
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
++R +E +G E S +LDTK L + +A+ +
Sbjct: 72 KQRLKAEK-----DVSGKEEHQS-------------PQLDTKSLAR-----QMHEAYLKH 108
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEV--------------------ASSTAECHESQR 161
+ R + S PP + + AS+ E R
Sbjct: 109 FHMNKAKARVFLTGKTSTPPFVIHDMDSLQHAEKKLLTQLLGNMTSGDASTLREREVEAR 168
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIK 202
L+L+ Q+A+ +V + EFAK VPGF L +DQ+ L+K
Sbjct: 169 LFLFCQYAS--VATVTELTEFAKAVPGFATLDLNDQVTLLK 207
>gi|158605197|gb|ABW74841.1| peroxisome proliferator-activated receptor alpha [Merluccius
merluccius]
Length = 337
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 115/254 (45%), Gaps = 28/254 (11%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C + +C + + NRN+CQYCRF KCL GMS +++R+GR+P+
Sbjct: 4 KGFFRRTIRLKLEYEKC--ELRCRIHKKNRNKCQYCRFHKCLREGMSHNAIRFGRIPQSE 61
Query: 62 RERSDSE--TGSTRVSTTGAEPPSSLETAGPVQSL---PSSTELDTKQLLTYD------- 109
++R E TG R PP+ + S D +L+
Sbjct: 62 KQRLKEEFGTGGRREEEQTPTPPNHKVLVQQIHQAYMRNFSMNKDRARLILTGKTSRPPF 121
Query: 110 VILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAE----CHESQRLWLW 165
VI + + G PV PP + P V C + R W
Sbjct: 122 VIHDMETFQAAEQTLEVRGAAGPCPGPVRRPPIWLQEPLVKGDLERQKPGCSSAARALQW 181
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTF 224
+++ EFAK +PGF L +Q+ L+K G +E L+ + S + D L
Sbjct: 182 S--------GSKKLTEFAKNIPGFLHLDLTNQVTLLKYGVYEALFTLHASCMNKDGLLVA 233
Query: 225 SDGMYVTRQQLEVM 238
G ++TR+ L+ +
Sbjct: 234 RGGGFITREFLKSL 247
>gi|215024|gb|AAA50049.1| retinoic acid receptor alpha-2.A [Danio rerio]
Length = 444
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 109/240 (45%), Gaps = 56/240 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C R+ C++ ++ RNRCQYCR +KCL VGMS++SVR R
Sbjct: 96 KGFFRRSIQKNMVYTCHREKNCIINKVTRNRCQYCRLQKCLEVGMSKESVRNDR------ 149
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH--- 119
+ P TE T T +I V +AH
Sbjct: 150 -----------------------NKKKKEEKKPECTENYTLSPDTEQMIDRVRKAHQETF 186
Query: 120 -SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
S C+ + T + V+L LW +F+ T + +
Sbjct: 187 PSLCQLGKYTTSNSSERRVAL-------------------DVDLW--DKFSELSTKCIIK 225
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
VEFAK++PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 226 TVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 285
>gi|145386519|ref|NP_036804.2| thyroid hormone receptor beta isoform 1 [Rattus norvegicus]
gi|76097020|gb|ABA39294.1| thyroid hormone receptor beta delta variant [Rattus norvegicus]
Length = 497
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 164 EGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 223
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 224 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 263
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 264 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 314
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R DS +LT + M VTR
Sbjct: 315 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTR 374
Query: 233 QQLE 236
QL+
Sbjct: 375 GQLK 378
>gi|403289919|ref|XP_003936086.1| PREDICTED: thyroid hormone receptor beta isoform 1 [Saimiri
boliviensis boliviensis]
gi|403289921|ref|XP_003936087.1| PREDICTED: thyroid hormone receptor beta isoform 2 [Saimiri
boliviensis boliviensis]
gi|403289923|ref|XP_003936088.1| PREDICTED: thyroid hormone receptor beta isoform 3 [Saimiri
boliviensis boliviensis]
gi|403289925|ref|XP_003936089.1| PREDICTED: thyroid hormone receptor beta isoform 4 [Saimiri
boliviensis boliviensis]
Length = 461
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 128 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 187
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 188 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 227
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 228 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 278
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R DS +LT + M VTR
Sbjct: 279 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTR 338
Query: 233 QQLE 236
QL+
Sbjct: 339 GQLK 342
>gi|338718051|ref|XP_001498920.2| PREDICTED: peroxisome proliferator-activated receptor delta [Equus
caballus]
Length = 402
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 117/253 (46%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 56 KGFFRRTIRMKLEYEKCARS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 113
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + + ++ S Q P +L Y+ L N
Sbjct: 114 KRKLVAGLTASEAS----------------QHNPQVADLKAFSKHIYNAYL-------KN 150
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S S+P V ++++ +W+Q + P
Sbjct: 151 FNMTKKKARGILTGKAS-----HSAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVH 205
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F +L +DQ+ L+K G E ++ + L
Sbjct: 206 VFYRCQCTSVETVRELTEFAKSIPSFSNLFLNDQVTLLKYGVHEAIFAMLASIINKDGLL 265
Query: 224 FSDGM-YVTRQQL 235
+ G +VTR+ L
Sbjct: 266 VASGTGFVTREFL 278
>gi|326679971|ref|XP_003201422.1| PREDICTED: peroxisome proliferator-activated receptor alpha-like,
partial [Danio rerio]
Length = 407
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 117/251 (46%), Gaps = 44/251 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R +C + + NRN+CQYCRF+KCL+VGMS +++R+GR+P+
Sbjct: 66 KGFFRRTIRLKLEYDKCER--RCKIQKKNRNKCQYCRFQKCLSVGMSHNAIRFGRMPQSE 123
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R +E TG E D K L + +A+ N
Sbjct: 124 KLRLKAEI------LTGER----------------DVEDDQKTLAK-----QIYEAYVKN 156
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPE---------VASSTAEC----HESQRLWLWQQF 168
+ R ++ S PP + E VA C ++ + ++
Sbjct: 157 FNMNKSKARTILTGKTSTPPFVIHDMETLQLAEQTFVAKMMGSCGGLLNKDPEVRIFHCC 216
Query: 169 AAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSDG 227
+V + EFAK VPGF +L +DQ+ L+K G E L+ S + D L
Sbjct: 217 QCTSVETVTELTEFAKSVPGFSNLDLNDQVTLLKYGVHEALFAMLASCMNKDGLLVAYGS 276
Query: 228 MYVTRQQLEVM 238
++TR+ L+ +
Sbjct: 277 GFITREFLKSL 287
>gi|156523279|ref|NP_001096037.1| peroxisome proliferator-activated receptor alpha [Danio rerio]
gi|113037637|gb|ABI30003.1| peroxisome proliferator activated receptor alpha [Danio rerio]
Length = 459
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 117/251 (46%), Gaps = 44/251 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R +C + + NRN+CQYCRF+KCL+VGMS +++R+GR+P+
Sbjct: 118 KGFFRRTIRLKLEYDKCER--RCKIQKKNRNKCQYCRFQKCLSVGMSHNAIRFGRMPQSE 175
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R +E TG E D K L + +A+ N
Sbjct: 176 KLRLKAEI------LTGER----------------DVEDDQKTLAK-----QIYEAYVKN 208
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPE---------VASSTAEC----HESQRLWLWQQF 168
+ R ++ S PP + E VA C ++ + ++
Sbjct: 209 FNMNKSKARTILTGKTSTPPFVIHDMETLQLAEQTFVAKMMGSCGGLLNKDPEVRIFHCC 268
Query: 169 AAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSDG 227
+V + EFAK VPGF +L +DQ+ L+K G E L+ S + D L
Sbjct: 269 QCTSVETVTELTEFAKSVPGFSNLDLNDQVTLLKYGVHEALFAMLASCMNKDGLLVAYGS 328
Query: 228 MYVTRQQLEVM 238
++TR+ L+ +
Sbjct: 329 GFITREFLKSL 339
>gi|399498506|ref|NP_001257783.1| thyroid hormone receptor beta isoform 2 [Rattus norvegicus]
gi|149040004|gb|EDL94088.1| thyroid hormone receptor beta, isoform CRA_b [Rattus norvegicus]
gi|149040005|gb|EDL94089.1| thyroid hormone receptor beta, isoform CRA_b [Rattus norvegicus]
Length = 461
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 128 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 187
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 188 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 227
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 228 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 278
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R DS +LT + M VTR
Sbjct: 279 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTR 338
Query: 233 QQLE 236
QL+
Sbjct: 339 GQLK 342
>gi|157679164|dbj|BAF80457.1| peroxisome proliferator-activated receptor alpha [Pagrus major]
Length = 469
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 117/251 (46%), Gaps = 40/251 (15%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R +C + + NRN+CQYCRF+KCL+VGMS +++R+GR+P+
Sbjct: 124 KGFFRRTIRLKLEYDKCER--RCKIQKKNRNKCQYCRFQKCLSVGMSHNAIRFGRMPQSE 181
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + +E TG + A D K L + +A+ N
Sbjct: 182 KLKLKAEM------VTGDREVEDPQVA------------DQKTLAR-----QIYEAYLKN 218
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPE-------------VASSTAECHESQRLWLWQQF 168
+ R ++ S PP + E V S+ + + ++
Sbjct: 219 FNMNKAKARTILTGKTSTPPFVIHDMETLQLAEQTLVAKMVGSAASLKDREAEVRIFHCC 278
Query: 169 AAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSDG 227
+V + EFAK VPGF L +DQ+ L+K G +E L+ S + D L
Sbjct: 279 QCTSVETVTELTEFAKSVPGFSSLDLNDQVTLLKYGVYEALFAMLASSMNKDGLLVAYGS 338
Query: 228 MYVTRQQLEVM 238
++TR+ L+ +
Sbjct: 339 GFITREFLKSL 349
>gi|308387346|ref|NP_001184140.1| peroxisome proliferator-activated receptor alpha [Oncorhynchus
mykiss]
gi|307751334|gb|ADN92684.1| peroxisome proliferator-activated receptor alpha [Oncorhynchus
mykiss]
Length = 464
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 120/252 (47%), Gaps = 41/252 (16%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCL+VGMS +++R+GR+P+
Sbjct: 118 KGFFRRTIRLKLEYDKCER--HCKIQKKNRNKCQYCRFQKCLSVGMSHNAIRFGRMPQSE 175
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + +E TG E P Q+ D K L + + +A+ N
Sbjct: 176 KLKLKAEI------LTGDR-----EVEDPQQA-------DQKTLARH-----IYEAYLKN 212
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVAS-----------STAECHESQRLWLWQQFAA 170
+ R ++ S PP + E TA H ++ + F
Sbjct: 213 FNMNKAKARTILTGKTSTPPFVIHDMETLQLAEQTLVAKMVGTAGGHLLEKEAEVRIFHC 272
Query: 171 HVTPSVQRV---VEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSD 226
SV+ V EFAK VPGF L +DQ+ L+K G +E L+ S + D L
Sbjct: 273 CQCTSVETVTELTEFAKSVPGFSSLDLNDQVTLLKYGVYEALFALLASCMNKDGLLVAYG 332
Query: 227 GMYVTRQQLEVM 238
++TR+ L+ +
Sbjct: 333 SGFITREFLKSL 344
>gi|157060005|dbj|BAF79869.1| peroxisome proliferator-activated receptor gamma [Eublepharis
macularius]
gi|157060007|dbj|BAF79870.1| peroxisome proliferator-activated receptor gamma [Eublepharis
macularius]
Length = 476
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 123/250 (49%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC + C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--ELNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAE--PPSSLETAGPVQSLP----------SSTELDTKQLLT 107
+E+ +E S +++ A+ + L ++S P + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKLLYDSYIKSFPLTKAKARAILTGKTTDISPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + C++ L P + + EVA + ++Q+
Sbjct: 248 YDMNSLMMGEDQIKCKH--------------LTPMQEQNKEVA-----------ICIFQR 282
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
+VQ + EFAK +PGF L +DQ+ L+K G E+ ++ + + S+G
Sbjct: 283 CQFRSVEAVQEITEFAKSIPGFVSLDLNDQVTLLKYGVHEIIYTLLASMMNKDGVLISNG 342
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 343 QGFMTREFLK 352
>gi|623567|gb|AAA60743.1| thyroid hormone receptor [Rattus norvegicus]
Length = 461
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 128 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 187
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 188 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 227
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 228 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 278
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R DS +LT + M VTR
Sbjct: 279 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTR 338
Query: 233 QQLE 236
QL+
Sbjct: 339 GQLK 342
>gi|164663877|ref|NP_001106888.1| thyroid hormone receptor beta isoform 1 [Mus musculus]
gi|586093|sp|P37242.1|THB_MOUSE RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear
receptor subfamily 1 group A member 2; AltName:
Full=c-erbA-2; AltName: Full=c-erbA-beta
gi|238332|gb|AAB20226.1| hormone receptor beta subunit [Mus sp.]
gi|148688699|gb|EDL20646.1| thyroid hormone receptor beta, isoform CRA_a [Mus musculus]
Length = 461
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 128 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 187
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 188 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 227
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 228 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 278
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R DS +LT + M VTR
Sbjct: 279 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTR 338
Query: 233 QQLE 236
QL+
Sbjct: 339 GQLK 342
>gi|151413587|gb|ABS11251.1| thyroid hormone receptor [Scyliorhinus canicula]
Length = 373
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 117/240 (48%), Gaps = 31/240 (12%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC AVGM+ D V R+
Sbjct: 37 KGFFRRTIQKNLHPAYSCKYDGCCVIDKITRNQCQLCRFKKCTAVGMAMDLVLDDSKRIA 96
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR ++ E E +Q+ P T + +++I + AH
Sbjct: 97 KR------------KLIEDNREKRRREEVVKTMQNRPEPTSEE------WELIRVATDAH 138
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
+ T +K LP SP +S + L + QF +TP++ R
Sbjct: 139 MT----TNAQGSHWKQKRKFLPEDIGQSPMATTSEG---DKVDLEAFSQFTRIITPAITR 191
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQLE 236
VV+FAK++P F +L +DQ+IL+K E+ + R +S +LT + M V R+QL+
Sbjct: 192 VVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDAESETLTLNGEMAVKREQLK 251
>gi|400270857|gb|AFP75252.1| retinoid X receptor, partial [Tupaia belangeri]
Length = 431
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 125 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 182
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R++SE EP SS PV+ + + LAV
Sbjct: 183 DRNESEV----------EPTSSANEDMPVEKI-------------LEAELAV-------- 211
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L PS + P T C + + Q F +VE+
Sbjct: 212 ---EPKTDTYVEANMGLSPSSPNDP----VTNICQAADK----QLFT---------LVEW 251
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKRVP F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 252 AKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 304
>gi|185133784|ref|NP_001117172.1| thyroid hormone receptor beta [Salmo salar]
gi|15741114|gb|AAL06731.1| thyroid hormone receptor beta large isoform [Salmo salar]
Length = 396
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 124/251 (49%), Gaps = 44/251 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C + KC++ ++ RN+CQ CRFKKC+AVGM+ D V R+
Sbjct: 54 KGFFRRTIQKNLNPTYACKYEAKCIIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLA 113
Query: 59 KRSR-ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQA 117
KR E + + T + P PS E +D+I V++A
Sbjct: 114 KRKLIEENRERRRKEELQKTVWDRPE-----------PSQEE--------WDLIRMVTEA 154
Query: 118 HHS-NCEYTEEGTRRLVRKPVSLPPSE---------VSSPEVASSTAECHESQRLWLWQQ 167
H S N + +R V + ++ +++PE + E + Q
Sbjct: 155 HMSTNAQGNHWKQKRKFLSAVGVKETKPEDIGQAPVINAPEGSKVDIEA--------FSQ 206
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFS 225
F +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT +
Sbjct: 207 FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLN 266
Query: 226 DGMYVTRQQLE 236
M VTR QL+
Sbjct: 267 GEMAVTRGQLK 277
>gi|395530718|ref|XP_003767435.1| PREDICTED: retinoic acid receptor RXR-gamma [Sarcophilus harrisii]
Length = 470
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 113/232 (48%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 167 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 224
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ERS++E ST ++G E ++ +++L + LAV S
Sbjct: 225 ERSENEVEST---SSGHE------------------DMPVERILEAE--LAVEPKTES-- 259
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y PV T CH + + Q F +VE+
Sbjct: 260 -YGNTNMENSTNDPV---------------TNICHAADK----QLFT---------LVEW 290
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S +T + + G++V R
Sbjct: 291 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVTVQDGILLATGLHVHR 342
>gi|74182672|dbj|BAE34683.1| unnamed protein product [Mus musculus]
Length = 461
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 128 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 187
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 188 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 227
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 228 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 278
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R DS +LT + M VTR
Sbjct: 279 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTR 338
Query: 233 QQLE 236
QL+
Sbjct: 339 GQLK 342
>gi|158962495|dbj|BAF91725.1| thyroid hormone receptor alpha A [Solea senegalensis]
Length = 413
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 120/240 (50%), Gaps = 31/240 (12%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +G C++ ++ RN+CQ CRFKKC++VGM+ D V RV
Sbjct: 77 KGFFRRTIQKNLHPSYSCKYEGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDEAKRVA 136
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR R+ E E +Q P E DT + +++I ++AH
Sbjct: 137 KR------------RLIEENREKRKKEEMVRTLQVRP---EPDTAE---WELIRMATEAH 178
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
YT +K +P P V +S + L + +F +TP++ R
Sbjct: 179 R----YTNAQGSSWKQKRKFMPDDIGQGPMVPTSDG---DKVDLEAFSEFTKIMTPAITR 231
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQLE 236
VV+FAK++P F +L +DQ+IL+K E+ + R +S +LT + M V R+QL+
Sbjct: 232 VVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVKREQLK 291
>gi|586094|sp|P18113.2|THB_RAT RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear
receptor subfamily 1 group A member 2; AltName:
Full=c-erbA-2; AltName: Full=c-erbA-beta
Length = 461
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 128 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 187
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 188 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 227
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 228 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGQVDLEA--------FSHFTKIITP 278
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R DS +LT + M VTR
Sbjct: 279 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTR 338
Query: 233 QQLE 236
QL+
Sbjct: 339 GQLK 342
>gi|395533985|ref|XP_003769029.1| PREDICTED: peroxisome proliferator-activated receptor delta
[Sarcophilus harrisii]
Length = 442
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 118/253 (46%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C D C V + NRN+CQ+CRF+KCLA+GMS +++R+GR+P+
Sbjct: 96 KGFFRRTIRMKLEYEKC--DRSCKVQKKNRNKCQHCRFQKCLALGMSHNAIRFGRMPEAE 153
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R G T +G P + D K + + A+ N
Sbjct: 154 KRRLVE--GLTASEVSGQNPQGA----------------DLKAFSKH-----IYNAYLKN 190
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF----------AAH 171
T++ R ++ S P P V ++++ +W+Q + H
Sbjct: 191 FNMTKKKARGILTGKASSTP-----PFVIHDMDTLWQAEKGLVWKQLVNGLPQYKEMSVH 245
Query: 172 V--------TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
V +V+ + EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 246 VFYRCQCTTVETVRELTEFAKSIPSFVSLFLNDQVTLLKYGVHEAIFAMLASIMNKDGLL 305
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 306 VANGNGFVTREFL 318
>gi|203419|gb|AAA40916.1| thyroid hormone receptor [Rattus norvegicus]
Length = 456
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 123 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 182
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 183 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 222
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 223 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGQVDLEA--------FSHFTKIITP 273
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R DS +LT + M VTR
Sbjct: 274 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTR 333
Query: 233 QQLE 236
QL+
Sbjct: 334 GQLK 337
>gi|297595168|gb|ADI48100.1| thyroid hormone receptor aa [Sciaenops ocellatus]
Length = 413
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +G C++ ++ RN+CQ CRFKKC++VGM+ D V RV
Sbjct: 77 KGFFRRTIQKNLHPAYSCKYEGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDESKRVA 136
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +R+R E R T EP ++ +++I
Sbjct: 137 KRRLIEENRQRRKREE-MVRTLQTRPEPNTA----------------------EWELIRM 173
Query: 114 VSQAH-HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH H+N + + +R LP P V +S + L + +F +
Sbjct: 174 ATEAHRHTNAQGSSWKQKRKF-----LPDDIGQGPMVPTSVG---DKVDLEAFSEFTKIM 225
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT + M V
Sbjct: 226 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAV 285
Query: 231 TRQQLE 236
R+QL+
Sbjct: 286 KREQLK 291
>gi|16580811|dbj|BAB71756.1| retinoic acid receptor alpha [Paralichthys olivaceus]
Length = 285
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 115/237 (48%), Gaps = 50/237 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSR--DSVRYGRVPKR 60
+GFFRRSIQK + Y C R+ C++ ++ RNRCQYCR +KCL VGMS+ +SVR R K+
Sbjct: 16 KGFFRRSIQKNMVYTCHREKNCIINKVTRNRCQYCRLQKCLEVGMSKECESVRNDRNKKK 75
Query: 61 SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHS 120
E+ T S +S DT+Q+ I V +AH
Sbjct: 76 KDEKKQECTESYVLSP------------------------DTEQM-----IDRVRKAHKE 106
Query: 121 NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVV 180
+ P S+++E S + LW +F+ T + + V
Sbjct: 107 -----------------TFPSLCQLGKYTTSNSSERRVSLDVDLWDKFSELSTKCIIKTV 149
Query: 181 EFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQL 235
EFAK++PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 150 EFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQM 206
>gi|148237103|ref|NP_001089591.1| uncharacterized protein LOC734648 [Xenopus laevis]
gi|68533768|gb|AAH99024.1| MGC115510 protein [Xenopus laevis]
Length = 471
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 112/232 (48%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C CL+ + RNRCQYCR++KCLA+GM R++V+ R RSR
Sbjct: 168 KGFFKRTIRKDLFYTCRDSKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--HRSR 225
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E+SD+E ST + +S E+ +++L + LAV +
Sbjct: 226 EKSDTEAESTSI---------------------TSEEMAVERILEAE--LAVEPKIEA-- 260
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + G PV T CH + + Q F +VE+
Sbjct: 261 -FGDAGLPNSTNDPV---------------TNICHAADK----QLFT---------LVEW 291
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 292 AKRIPHFSDLLLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 343
>gi|825639|emb|CAA38899.1| thyroid hormone receptor alpha 1 [Homo sapiens]
Length = 410
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 120/246 (48%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHI 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R QL+
Sbjct: 283 KRAQLK 288
>gi|374534098|gb|AEZ53930.1| peroxisome proliferator activated receptor gamma [Capra hircus]
Length = 475
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K +S P + S EVA R++ Q
Sbjct: 248 YDM------------NSLMMGEDKIKFKHIS--PLQEPSKEVAI---------RIFQGCQ 284
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 285 FRS--VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 342
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 343 QGFMTREFLK 352
>gi|2653404|emb|CAA73032.1| peroxisome proliferator activated receptor gamma 1 [Bos taurus]
gi|94534932|gb|AAI16099.1| PPARG protein [Bos taurus]
Length = 475
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K +S P + S EVA R++ Q
Sbjct: 248 YDM------------NSLMMGEDKIKFKHIS--PLQEPSKEVAI---------RIFQGCQ 284
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 285 FRS--VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 342
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 343 QGFMTREFLK 352
>gi|373938668|gb|AEY79497.1| peroxisome proliferator activated receptor gamma 1a [Bubalus
bubalis]
Length = 475
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K +S P + S EVA R++ Q
Sbjct: 248 YDM------------NSLMMGEDKIKFKHIS--PLQEPSKEVAI---------RIFQGCQ 284
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 285 FRS--VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 342
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 343 QGFMTREFLK 352
>gi|155369642|ref|NP_001094391.1| peroxisome proliferator-activated receptor gamma [Ovis aries]
gi|23306673|gb|AAN15206.1| peroxisome proliferator activated receptor gamma 1 protein [Ovis
aries]
gi|262385089|gb|ACY64542.1| peroxisome proliferator-activated receptor gamma [Capra hircus]
gi|314912407|gb|ADT63789.1| peroxisome proliferator-activated receptor gamma [Capra hircus]
Length = 475
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K +S P + S EVA R++ Q
Sbjct: 248 YDM------------NSLMMGEDKIKFKHIS--PLQEPSKEVAI---------RIFQGCQ 284
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 285 FRS--VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 342
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 343 QGFMTREFLK 352
>gi|45382025|ref|NP_990059.1| peroxisome proliferator-activated receptor delta [Gallus gallus]
gi|8886491|gb|AAF80480.1|AF163810_1 peroxisome proliferator-activated receptor beta [Gallus gallus]
Length = 443
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 117/256 (45%), Gaps = 49/256 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCL++GMS +++R+GR+P+
Sbjct: 96 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLSLGMSHNAIRFGRMPEAE 153
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + + ++ +S P +L Y+ L N
Sbjct: 154 KRKLVAGLTASEISCQN----------------PQVADLKAFSKHIYNAYL-------KN 190
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S P P V ++++ +W+Q + P
Sbjct: 191 FNMTKKKARGILTGKASSTP----QPFVIHDMDTLWQAEKGLVWKQLVNGIPPYKEIGVH 246
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 247 VFYRCQCTTVETVRELTEFAKSIPSFIGLYLNDQVTLLKYGVHEAIFAMLASIMNKDGLL 306
Query: 224 FSDGM-YVTRQQLEVM 238
++G +VTR+ L +
Sbjct: 307 VANGNGFVTREFLRTL 322
>gi|45384256|ref|NP_990625.1| retinoic acid receptor RXR-gamma [Gallus gallus]
gi|133700|sp|P28701.1|RXRG_CHICK RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|63496|emb|CAA41743.1| retinoic acid receptor [Gallus gallus]
Length = 467
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 113/232 (48%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R + SR
Sbjct: 164 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QGSR 221
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ERS++E S T+G + +P L+ + LAV +
Sbjct: 222 ERSENEAES---------------TSGGSEDMPVERILEAE--------LAVEPKTEA-- 256
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y++ T PV T CH + + Q F +VE+
Sbjct: 257 -YSDVNTESSTNDPV---------------TNICHAADK----QLFT---------LVEW 287
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 288 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 339
>gi|15741098|gb|AAL06723.1| thyroid hormone receptor alpha [Takifugu rubripes]
Length = 321
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 125/242 (51%), Gaps = 35/242 (14%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +G C++ ++ RN+CQ CRFKKC +VGM+ D V RV
Sbjct: 6 KGFFRRTIQKNLHPAYSCKYEGCCIIDKITRNQCQLCRFKKCTSVGMAMDLVLDDSKRVA 65
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR R+ + E +Q+ P E DT + +++I V++AH
Sbjct: 66 KR------------RLIEENRQKRKKEEMVRMLQARP---EPDTAE---WELIRMVTEAH 107
Query: 119 -HSNCE-YTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
H+N E T + R+ + + P V SS + L + +F +TP++
Sbjct: 108 RHTNAEGSTWKQKRKFLSDDIG------QGPVVPSSDG---DKVDLEAFSEFTKIMTPAI 158
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQ 234
RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S + V R+Q
Sbjct: 159 TRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGKIAVKREQ 218
Query: 235 LE 236
L+
Sbjct: 219 LK 220
>gi|6018474|emb|CAB57886.1| thyroid hormone receptor alpha 2 [Homo sapiens]
Length = 490
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 120/246 (48%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHI 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R QL+
Sbjct: 283 KRAQLK 288
>gi|74227383|dbj|BAE21770.1| unnamed protein product [Mus musculus]
Length = 385
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 52 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 111
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 112 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 151
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 152 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 202
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R DS +LT + M VTR
Sbjct: 203 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTR 262
Query: 233 QQLE 236
QL+
Sbjct: 263 GQLK 266
>gi|372199357|gb|AEX88626.1| peroxisome proliferator-activated receptor gamma 2 [Capra hircus]
Length = 505
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K +S P + S EVA R++ Q
Sbjct: 278 YDM------------NSLMMGEDKIKFKHIS--PLQEPSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 373 QGFMTREFLK 382
>gi|6094470|sp|Q91241.1|THAA_PAROL RecName: Full=Thyroid hormone receptor alpha-A; Short=THR-alpha-A;
AltName: Full=Nuclear receptor subfamily 1 group A
member 1-A
gi|416422|dbj|BAA03928.1| thyroid hormone receptor alpha A [Paralichthys olivaceus]
Length = 416
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 124/242 (51%), Gaps = 35/242 (14%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +G C++ ++ RN+CQ CRFKKC++VGM+ D V RV
Sbjct: 80 KGFFRRTIQKNLHPSYSCKYEGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVA 139
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR R+ E E +Q P E DT + +++I + AH
Sbjct: 140 KR------------RLIEENREKRKREEMVRTLQIRP---EPDTAE---WELIRMATDAH 181
Query: 119 -HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
H+N + + + R+ + + SP V +S + L + +F +TP++
Sbjct: 182 RHTNAQGSSWKQKRKFLSDDIG------QSPMVPTSDG---DKVDLEAFSEFTKIMTPAI 232
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQ 234
RVV+FAK++P F +L +DQ+IL+K E+ + R DS +LT + M V R+Q
Sbjct: 233 TRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNSEMAVKREQ 292
Query: 235 LE 236
L+
Sbjct: 293 LK 294
>gi|158962497|dbj|BAF91726.1| thyroid hormone receptor beta [Solea senegalensis]
Length = 395
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 123/245 (50%), Gaps = 32/245 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60
+GFFRR+IQK + Y C + KC++ ++ RN+CQ CRFKKC+AVGM+ D V
Sbjct: 53 KGFFRRTIQKNLNPTYACKFEAKCVIDKVTRNQCQECRFKKCIAVGMATDLV-------- 104
Query: 61 SRERSDSETGSTR---VSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQA 117
DS+ + R L+ + P+ E +D+I V+ A
Sbjct: 105 ---LDDSKRLAKRKLIEENRERRRKEELQKTAWDRLEPTQEE--------WDLIRMVTDA 153
Query: 118 HHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVA--SSTAECHESQRLWL--WQQFAAHVT 173
H + ++ RK +S + + PE +S A E ++ + + QF +T
Sbjct: 154 HMATNAQGNHWKQK--RKFLSAAGVKEAKPEDIGHASMANTPEGNKVDIEAFSQFTKIIT 211
Query: 174 PSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVT 231
P++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VT
Sbjct: 212 PAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVT 271
Query: 232 RQQLE 236
R QL+
Sbjct: 272 RGQLK 276
>gi|30794338|ref|NP_851367.1| peroxisome proliferator-activated receptor gamma [Bos taurus]
gi|13431789|sp|O18971.1|PPARG_BOVIN RecName: Full=Peroxisome proliferator-activated receptor gamma;
Short=PPAR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group C member 3
gi|2653406|emb|CAA73033.1| peroxisome proliferator activated receptor gamma 2 [Bos taurus]
gi|296474654|tpg|DAA16769.1| TPA: peroxisome proliferator-activated receptor gamma [Bos taurus]
gi|440900005|gb|ELR51236.1| Peroxisome proliferator-activated receptor gamma [Bos grunniens
mutus]
Length = 505
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K +S P + S EVA R++ Q
Sbjct: 278 YDM------------NSLMMGEDKIKFKHIS--PLQEPSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 373 QGFMTREFLK 382
>gi|410901913|ref|XP_003964439.1| PREDICTED: thyroid hormone receptor alpha-like isoform 1 [Takifugu
rubripes]
Length = 416
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 126/247 (51%), Gaps = 45/247 (18%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +G C++ ++ RN+CQ CRFKKC +VGM+ D V RV
Sbjct: 80 KGFFRRTIQKNLHPAYSCKYEGCCIIDKITRNQCQLCRFKKCTSVGMAMDLVLDDSKRVA 139
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +R+R E V+ L + E DT + +++I
Sbjct: 140 KRRLIEENRQRRKKEEM--------------------VRMLQARPEPDTAE---WELIRM 176
Query: 114 VSQAH-HSNCE-YTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAH 171
V++AH H+N E T + R+ + + P V SS + L + +F
Sbjct: 177 VTEAHRHTNAEGSTWKQKRKFLSDDIG------QGPVVPSSDG---DKVDLEAFSEFTKI 227
Query: 172 VTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMY 229
+TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S +
Sbjct: 228 MTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGKIA 287
Query: 230 VTRQQLE 236
V R+QL+
Sbjct: 288 VKREQLK 294
>gi|326933851|ref|XP_003213012.1| PREDICTED: peroxisome proliferator-activated receptor delta-like
[Meleagris gallopavo]
Length = 443
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 116/253 (45%), Gaps = 49/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCL++GMS +++R+GR+P+
Sbjct: 96 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLSLGMSHNAIRFGRMPEAE 153
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + + ++ +S P +L Y+ L N
Sbjct: 154 KRKLVAGLTASEISCQN----------------PQVADLKAFSKHIYNAYL-------KN 190
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S P P V ++++ +W+Q + P
Sbjct: 191 FNMTKKKARGILTGKASSTP----QPFVIHDMDTLWQAEKGLVWKQLVNGIPPYKEIGVH 246
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 247 VFYRCQCTTVETVRELTEFAKSIPSFIGLYLNDQVTLLKYGVHEAIFAMLASIMNKDGLL 306
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 307 VANGNGFVTREFL 319
>gi|410901915|ref|XP_003964440.1| PREDICTED: thyroid hormone receptor alpha-like isoform 2 [Takifugu
rubripes]
Length = 409
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 126/247 (51%), Gaps = 45/247 (18%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +G C++ ++ RN+CQ CRFKKC +VGM+ D V RV
Sbjct: 73 KGFFRRTIQKNLHPAYSCKYEGCCIIDKITRNQCQLCRFKKCTSVGMAMDLVLDDSKRVA 132
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +R+R E V+ L + E DT + +++I
Sbjct: 133 KRRLIEENRQRRKKEEM--------------------VRMLQARPEPDTAE---WELIRM 169
Query: 114 VSQAH-HSNCE-YTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAH 171
V++AH H+N E T + R+ + + P V SS + L + +F
Sbjct: 170 VTEAHRHTNAEGSTWKQKRKFLSDDIG------QGPVVPSSDG---DKVDLEAFSEFTKI 220
Query: 172 VTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMY 229
+TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S +
Sbjct: 221 MTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGKIA 280
Query: 230 VTRQQLE 236
V R+QL+
Sbjct: 281 VKREQLK 287
>gi|296279072|gb|ADH04374.1| thyroid hormone receptor beta2delta [Rattus norvegicus]
Length = 511
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 178 EGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 237
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 238 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 277
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 278 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 328
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R DS +LT + M VTR
Sbjct: 329 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTR 388
Query: 233 QQLE 236
QL+
Sbjct: 389 GQLK 392
>gi|15741118|gb|AAL06733.1| thyroid hormone receptor alpha [Scophthalmus maximus]
Length = 307
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 125/239 (52%), Gaps = 29/239 (12%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60
+GFFRR+IQK + Y C +G C++ ++ RN+CQ CRFKKC++VGM+ D V G +
Sbjct: 3 KGFFRRTIQKNLHPAYSCKYEGCCIIDKITRNQCQLCRFKKCISVGMAMDLV-LGDSKRV 61
Query: 61 SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH-H 119
++ R E R + V++L E +T++ +D+I V++AH H
Sbjct: 62 AKRRLIEENREKR------------KREEMVRTLQIRPEPNTEE---WDLIKLVTEAHRH 106
Query: 120 SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRV 179
+N + + +R L P V +S + L + +F +TP++ RV
Sbjct: 107 TNAQGSSWKQKRKF-----LSDDIGQGPMVPTSDG---DKVDLEAFSEFTKIMTPAITRV 158
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQLE 236
V+FAK++P F +L +DQ+IL+K E+ + R +S +LT + M V R+QL+
Sbjct: 159 VDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVKREQLK 217
>gi|351709120|gb|EHB12039.1| Thyroid hormone receptor alpha [Heterocephalus glaber]
Length = 548
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC++VGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|401834511|gb|AFQ23187.1| peroxisome proliferator activated receptor gamma2 [Capra hircus]
Length = 505
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K +S P + S EVA R++ Q
Sbjct: 278 YDM------------NSLMMGEDKIKFKHIS--PLQEPSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 373 QGFMTREFLK 382
>gi|417402485|gb|JAA48089.1| Putative thyroid hormone receptor alpha [Desmodus rotundus]
Length = 538
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC++VGM+ D V RV
Sbjct: 76 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVA 135
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 136 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 172
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 173 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 224
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 225 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 284
Query: 231 TRQQLE 236
R+QL+
Sbjct: 285 KREQLK 290
>gi|449490414|ref|XP_002199092.2| PREDICTED: peroxisome proliferator-activated receptor delta
[Taeniopygia guttata]
Length = 440
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 116/253 (45%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCL++GMS +++R+GR+P+
Sbjct: 94 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLSLGMSHNAIRFGRMPEAE 151
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + + ++ +S P +L Y+ L N
Sbjct: 152 KRKLVAGLTASEISCQN----------------PQVADLKAFSKHIYNAYL-------KN 188
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S P P V ++++ +W+Q + P
Sbjct: 189 FNMTKKKARGILTGKASSTP-----PFVIHDMDTLWQAEKGLVWKQLVNGIPPYKEIGVH 243
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 244 VFYRCQCTTVETVRELTEFAKSIPSFIGLYLNDQVTLLKYGVHEAIFAMLASIMNKDGLL 303
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 304 VANGNGFVTREFL 316
>gi|6678343|ref|NP_033406.1| thyroid hormone receptor beta isoform 2 [Mus musculus]
gi|558456|gb|AAA86957.1| beta 2 thyroid hormone receptor [Mus musculus]
gi|110645784|gb|AAI19553.1| Thyroid hormone receptor beta [Mus musculus]
gi|110645786|gb|AAI19554.1| Thyroid hormone receptor beta [Mus musculus]
gi|111598818|gb|AAH89035.1| Thyroid hormone receptor beta [Mus musculus]
gi|148688700|gb|EDL20647.1| thyroid hormone receptor beta, isoform CRA_b [Mus musculus]
Length = 475
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 142 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 201
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 202 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 241
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 242 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 292
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R DS +LT + M VTR
Sbjct: 293 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTR 352
Query: 233 QQLE 236
QL+
Sbjct: 353 GQLK 356
>gi|210060989|pdb|3DZU|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
gi|210060995|pdb|3DZY|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
gi|210061001|pdb|3E00|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 419
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 74 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 131
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 132 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 191
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 192 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 228
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 229 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 286
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 287 QGFMTREFLK 296
>gi|417402483|gb|JAA48088.1| Putative thyroid hormone receptor alpha [Desmodus rotundus]
Length = 538
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC++VGM+ D V RV
Sbjct: 76 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVA 135
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 136 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 172
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 173 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 224
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 225 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 284
Query: 231 TRQQLE 236
R+QL+
Sbjct: 285 KREQLK 290
>gi|25990190|gb|AAN75018.1| peroxisome proliferator activated receptor gamma-2 [Bos taurus]
Length = 505
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K +S P + S EVA R++ Q
Sbjct: 278 YDM------------NSLMMGEDKIKFKHIS--PLQEPSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 373 QGFMTREFLK 382
>gi|163929562|ref|NP_001106647.1| peroxisome proliferator-activated receptor gamma [Felis catus]
gi|162424857|gb|ABX90078.1| peroxisome proliferator-activated receptor gamma [Felis catus]
Length = 505
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 127/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YDV G ++ K ++ P + S EVA R++ Q
Sbjct: 278 YDV------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 373 QGFMTREFLKSL 384
>gi|346716100|ref|NP_001231210.1| peroxisome proliferator-activated receptor gamma [Cricetulus
griseus]
gi|13431791|sp|P57797.1|PPARG_CRIGR RecName: Full=Peroxisome proliferator-activated receptor gamma;
Short=PPAR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group C member 3
gi|461359|emb|CAA83219.1| peroxisome proliferator activated receptor gamma [Cricetulus
griseus]
Length = 475
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 248 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 284
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 285 FRS--VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 342
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 343 QGFMTREFLK 352
>gi|301608498|ref|XP_002933799.1| PREDICTED: retinoic acid receptor RXR-gamma [Xenopus (Silurana)
tropicalis]
Length = 468
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 114/232 (49%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C CL+ + RNRCQYCR++KCLA+GM R++V+ R +RSR
Sbjct: 165 KGFFKRTIRKDLVYTCRDTKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRSR 222
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E+SD+E ST S+T S E+ +++L + LAV +
Sbjct: 223 EKSDTEAEST--SST-------------------SEEMPVERILEAE--LAVEPKIEA-- 257
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + G PV T CH + + Q F +VE+
Sbjct: 258 -FGDAGLPNSTNDPV---------------TNICHAADK----QLFT---------LVEW 288
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 289 AKRIPHFSDLPLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 340
>gi|6094473|sp|O42450.2|THA_PYGAD RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear
receptor subfamily 1 group A member 1
Length = 402
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 116/242 (47%), Gaps = 35/242 (14%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYG--RVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC++VGM+ D V Y RV
Sbjct: 72 KGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLYDSKRVA 131
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + + P PS+ E +++I V++
Sbjct: 132 KRKLIEENRERRRKEEMIKSLQHRPN------------PSAEE--------WELIHVVTE 171
Query: 117 AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
AH S T +K LP SP + + L + +F +TP++
Sbjct: 172 AHRS----TNAQGSHWKQKRKFLPEDIGQSPMASMPDG---DKVDLEAFSEFTKIITPAI 224
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI--GYVSRLTTDSSLTFSDGMYVTRQQ 234
RVV+FAK++P F +L +DQ+IL+K E+ V +LT S M V R+Q
Sbjct: 225 TRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPEGGTLTLSGEMAVKREQ 284
Query: 235 LE 236
L+
Sbjct: 285 LK 286
>gi|355712925|gb|AES04513.1| peroxisome proliferator-activated receptor gamma [Mustela putorius
furo]
Length = 517
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 173 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 230
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 231 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 290
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 291 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 327
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 328 FRS--VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 385
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 386 QGFMTREFLK 395
>gi|454001|gb|AAC52134.1| peroxisome proliferator activated receptor gamma [Mus musculus]
Length = 475
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 248 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 284
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 285 FRS--VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 342
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 343 QGFMTREFLK 352
>gi|1710810|sp|P51129.1|RXRG_XENLA RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 470
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 112/232 (48%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C CL+ + RNRCQYCR++KCLA+GM R++V+ R +RSR
Sbjct: 167 KGFFKRTIRKDLVYTCRDSKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRSR 224
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E+SD+E ST +S E+ +++L + LAV +
Sbjct: 225 EKSDTEAESTSS---------------------TSEEMPVERILEAE--LAVDPKIEA-- 259
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + G PV T CH + + Q F +VE+
Sbjct: 260 -FGDAGLPNSTNDPV---------------TNICHAADK----QLFT---------LVEW 290
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 291 AKRIPYFSDLPLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 342
>gi|223941854|ref|NP_001138838.1| peroxisome proliferator-activated receptor gamma isoform 2 [Rattus
norvegicus]
gi|223941857|ref|NP_001138839.1| peroxisome proliferator-activated receptor gamma isoform 2 [Rattus
norvegicus]
gi|5107413|gb|AAD40118.1|AF156665_1 peroxisome proliferator-activated receptor gamma 1 [Rattus
norvegicus]
gi|7533192|gb|AAF63385.1|AF246457_1 peroxisome proliferator-activated receptor [Rattus norvegicus]
gi|7533194|gb|AAF63386.1|AF246458_1 peroxisome proliferator-activated receptor [Rattus norvegicus]
gi|3492843|dbj|BAA32540.1| PPAR-gamma protein [Rattus norvegicus]
gi|149049701|gb|EDM02155.1| peroxisome proliferator activated receptor gamma, isoform CRA_b
[Rattus norvegicus]
gi|149049702|gb|EDM02156.1| peroxisome proliferator activated receptor gamma, isoform CRA_b
[Rattus norvegicus]
Length = 475
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 248 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 284
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 285 FRS--VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 342
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 343 QGFMTREFLK 352
>gi|3915110|sp|Q28571.1|THB_SHEEP RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear
receptor subfamily 1 group A member 2
gi|1136118|emb|CAA92649.1| thyroid hormone receptor [Ovis aries]
Length = 411
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 125/244 (51%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 126 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 185
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 186 KRKLIEENREKRRREELQRSMGHKPE------------PTDQE--------WELIKTVTE 225
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 226 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 276
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 277 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 336
Query: 233 QQLE 236
+QL+
Sbjct: 337 RQLK 340
>gi|2582814|emb|CAA05310.1| thyroid hormone receptor alpha [Pygoscelis adeliae]
Length = 401
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 116/242 (47%), Gaps = 35/242 (14%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYG--RVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC++VGM+ D V Y RV
Sbjct: 71 KGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLYDSKRVA 130
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + + P PS+ E +++I V++
Sbjct: 131 KRKLIEENRERRRKEEMIKSLQHRPN------------PSAEE--------WELIHVVTE 170
Query: 117 AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
AH S T +K LP SP + + L + +F +TP++
Sbjct: 171 AHRS----TNAQGSHWKQKRKFLPEDIGQSPMASMPDG---DKVDLEAFSEFTKIITPAI 223
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI--GYVSRLTTDSSLTFSDGMYVTRQQ 234
RVV+FAK++P F +L +DQ+IL+K E+ V +LT S M V R+Q
Sbjct: 224 TRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPEGGTLTLSGEMAVKREQ 283
Query: 235 LE 236
L+
Sbjct: 284 LK 285
>gi|187960105|ref|NP_001120802.1| peroxisome proliferator-activated receptor gamma isoform 1 [Mus
musculus]
gi|514307|gb|AAA19971.1| peroxisome proliferator-activated receptor gamma [Mus musculus]
Length = 475
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 248 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 284
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 285 FRS--VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 342
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 343 QGFMTREFLK 352
>gi|158261165|dbj|BAF82760.1| unnamed protein product [Homo sapiens]
Length = 410
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 120/246 (48%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNPHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHI 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|90823201|gb|ABE01102.1| peroxisome proliferator-activated receptor gamma 1 [Sus scrofa]
Length = 475
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 248 YDM------------NSLMMGEDKIKFKHIT--PLQEHSKEVAI---------RIFQGCQ 284
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 285 FRS--VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 342
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 343 QGFMTREFLK 352
>gi|147902511|ref|NP_001088948.1| retinoid X receptor, gamma [Xenopus laevis]
gi|57032681|gb|AAH88915.1| LOC496325 protein [Xenopus laevis]
Length = 470
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 112/232 (48%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C CL+ + RNRCQYCR++KCLA+GM R++V+ R +RSR
Sbjct: 167 KGFFKRTIRKDLVYTCRDSKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRSR 224
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E+SD+E ST +S E+ +++L + LAV +
Sbjct: 225 EKSDTEAESTSS---------------------TSEEMPVERILEAE--LAVDPKIEA-- 259
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + G PV T CH + + Q F +VE+
Sbjct: 260 -FGDAGLPNSTNDPV---------------TNICHAADK----QLFT---------LVEW 290
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 291 AKRIPYFSDLPLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 342
>gi|410901917|ref|XP_003964441.1| PREDICTED: thyroid hormone receptor alpha-like isoform 3 [Takifugu
rubripes]
Length = 408
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 126/247 (51%), Gaps = 45/247 (18%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +G C++ ++ RN+CQ CRFKKC +VGM+ D V RV
Sbjct: 72 KGFFRRTIQKNLHPAYSCKYEGCCIIDKITRNQCQLCRFKKCTSVGMAMDLVLDDSKRVA 131
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +R+R E V+ L + E DT + +++I
Sbjct: 132 KRRLIEENRQRRKKEEM--------------------VRMLQARPEPDTAE---WELIRM 168
Query: 114 VSQAH-HSNCE-YTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAH 171
V++AH H+N E T + R+ + + P V SS + L + +F
Sbjct: 169 VTEAHRHTNAEGSTWKQKRKFLSDDIG------QGPVVPSSDG---DKVDLEAFSEFTKI 219
Query: 172 VTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMY 229
+TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S +
Sbjct: 220 MTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGKIA 279
Query: 230 VTRQQLE 236
V R+QL+
Sbjct: 280 VKREQLK 286
>gi|149040003|gb|EDL94087.1| thyroid hormone receptor beta, isoform CRA_a [Rattus norvegicus]
Length = 514
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 181 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 240
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 241 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 280
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 281 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLE--------AFSHFTKIITP 331
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R DS +LT + M VTR
Sbjct: 332 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTR 391
Query: 233 QQLE 236
QL+
Sbjct: 392 GQLK 395
>gi|344298847|ref|XP_003421102.1| PREDICTED: peroxisome proliferator-activated receptor delta-like
[Loxodonta africana]
Length = 441
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 120/253 (47%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P
Sbjct: 95 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMP--- 149
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
++E T +E S +S D K + + A+ N
Sbjct: 150 ----EAEKRKLVAGLTASE-----------GSRHNSQVADLKAFSKH-----IYNAYLKN 189
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 190 FNMTKKKARAILTGKASH-----TAPFVIHDIETLWQAEKGLVWKQLVNSLPPYKEISVH 244
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ ++EFAK +P F +L +DQ+ L+K G E ++ + L
Sbjct: 245 VFYRCQCTTVETVRELIEFAKSIPSFGNLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 304
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 305 VANGSGFVTREFL 317
>gi|344239007|gb|EGV95110.1| Peroxisome proliferator-activated receptor gamma [Cricetulus
griseus]
Length = 402
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 248 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 284
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 285 FRS--VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 342
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 343 QGFMTREFLK 352
>gi|227015775|gb|ACP17905.1| peroxisome proliferator activated receptor alpha [Cyprinus carpio]
Length = 208
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 50/222 (22%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R+ C + + NRN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 14 KGFFRRTIRLKLEYGKCERN--CKIQKKNRNKCQYCRFRKCLAVGMSHNAIRFGRIPQSE 71
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
++R + TG E S +LDTK L + +A+ +
Sbjct: 72 KQRLKAGQ-----DVTGKEQHES-------------QQLDTKSLAR-----QMHEAYLRH 108
Query: 122 CEYTEEGTRRLVRKPVSLPP---------------------SEVSSPEVASSTAECHESQ 160
+ R + S PP V+S +V + E
Sbjct: 109 FHMNKAKARVFLTGKTSTPPFVIHDMDTLQHAERKLLTQLLGNVASGDVCT-LREREVEA 167
Query: 161 RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIK 202
R++L+ Q+A+ +V + EFAK VPGF L +DQ+ L+K
Sbjct: 168 RIFLFCQYAS--VATVTELTEFAKAVPGFATLDLNDQVTLLK 207
>gi|13432235|sp|P37238.3|PPARG_MOUSE RecName: Full=Peroxisome proliferator-activated receptor gamma;
Short=PPAR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group C member 3
gi|500640|gb|AAA62277.1| peroxisome proliferator activated protein-gamma-2 [Mus musculus]
Length = 505
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + G ++ K ++ P + S EVA R++ Q
Sbjct: 278 YDMNSLMM------------GEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 373 QGFMTREFLK 382
>gi|148667109|gb|EDK99525.1| peroxisome proliferator activated receptor gamma [Mus musculus]
Length = 504
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 159 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 216
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 217 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 276
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + G ++ K ++ P + S EVA R++ Q
Sbjct: 277 YDMNSLMM------------GEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 313
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 314 FRS--VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 371
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 372 QGFMTREFLK 381
>gi|145315395|gb|ABP62960.1| thyroid hormone receptor alpha A protein [Epinephelus coioides]
Length = 416
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 124/242 (51%), Gaps = 35/242 (14%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +G C++ ++ RN+CQ CRFKKC++VGM+ D V RV
Sbjct: 80 KGFFRRTIQKNLHPAYSCKYEGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVA 139
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR R+ + E +Q+ P T + +++I ++AH
Sbjct: 140 KR------------RLIEENRQKRKREEMVRTLQTRPEPTTAE------WELIRMATEAH 181
Query: 119 -HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
H+N + + + R+ + + P V++S + L + +F +TP++
Sbjct: 182 RHTNAQGSSWKQKRKFLSDDIG------QGPMVSTSDG---DKVDLEAFSEFTKIMTPAI 232
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQ 234
RVV+FAK++P F +L +DQ+IL+K E+ + R DS +LT + M V R+Q
Sbjct: 233 TRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVKREQ 292
Query: 235 LE 236
L+
Sbjct: 293 LK 294
>gi|187960103|ref|NP_035276.2| peroxisome proliferator-activated receptor gamma isoform 2 [Mus
musculus]
gi|18255316|gb|AAH21798.1| Peroxisome proliferator activated receptor gamma [Mus musculus]
gi|32395567|gb|AAO45097.1| peroxisome proliferator-activated receptor gamma isoform 2 [Mus
musculus]
gi|32395569|gb|AAO45098.1| peroxisome proliferator-activated receptor gamma isoform 2 [Mus
musculus]
gi|32395964|gb|AAP42200.1| peroxisome proliferator-activated receptor gamma transcript 2 [Mus
musculus]
gi|157890439|dbj|BAF80899.1| peroxisome proliferator-activated receptor gamma [Mus musculus]
gi|157890441|dbj|BAF80900.1| peroxisome proliferator-activated receptor gamma [Mus musculus]
Length = 505
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + G ++ K ++ P + S EVA R++ Q
Sbjct: 278 YDMNSLMM------------GEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 373 QGFMTREFLK 382
>gi|417515778|gb|JAA53699.1| retinoic acid receptor RXR-alpha [Sus scrofa]
Length = 467
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 110/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 161 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 218
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R ++E ST SS PV+ + + LAV
Sbjct: 219 DRGENEVEST----------SSANEDMPVEKI-------------LEAELAV-------- 247
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V V L PS + P T C + + Q F +VE+
Sbjct: 248 ---EPKTETYVEANVGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 287
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKRVP F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 288 AKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 340
>gi|47678881|dbj|BAD20642.1| peroxisome proliferator-activated receptor gamma 1a [Sus scrofa]
gi|47678883|dbj|BAD20643.1| peroxisome proliferator-activated receptor gamma 1b [Sus scrofa]
gi|47678885|dbj|BAD20644.1| peroxisome proliferator-activated receptor gamma 1c [Sus scrofa]
gi|47678887|dbj|BAD20645.1| peroxisome proliferator-activated receptor gamma 1d [Sus scrofa]
Length = 475
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 248 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 284
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 285 FRS--VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 342
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 343 QGFMTREFLK 352
>gi|417403213|gb|JAA48424.1| Putative thyroid hormone receptor alpha [Desmodus rotundus]
Length = 604
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC++VGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|332219399|ref|XP_003258843.1| PREDICTED: retinoic acid receptor RXR-gamma [Nomascus leucogenys]
Length = 463
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 113/232 (48%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 160 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 217
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE +T G E ++ +++L + LAV S
Sbjct: 218 ERAESE---AECATGGHE------------------DMPVERILEAE--LAVEPKTES-- 252
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + T PV T CH + + Q F +VE+
Sbjct: 253 -YGDMNTENSTNDPV---------------TNICHAADK----QLFT---------LVEW 283
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 284 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>gi|117570937|gb|ABK39948.1| peroxisome proliferator activated receptor gamma 2 [Mus musculus]
Length = 505
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + G ++ K ++ P + S EVA R++ Q
Sbjct: 278 YDMNSLMM------------GEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 373 QGFMTREFLK 382
>gi|33413868|gb|AAO47435.1| thyroid hormone receptor alpha [Ambystoma mexicanum]
Length = 408
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 117/240 (48%), Gaps = 31/240 (12%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 72 KGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 131
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR ++ E E +Q P T + +++I V++AH
Sbjct: 132 KR------------KLIEENRERRRKEEMLKSMQHRPEPTSEE------WELIRVVTEAH 173
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
S T +K LP + P + L + +F +TP++ R
Sbjct: 174 RS----TNAQGSHWKQKRKFLPDAIGQCPMTNVPDG---DKVDLEAFSEFTKIITPAITR 226
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQLE 236
VV+FAK++P F +L +DQ+IL+K E+ + R DS +LT S M V R+QL+
Sbjct: 227 VVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEMAVKREQLK 286
>gi|395516634|ref|XP_003762492.1| PREDICTED: peroxisome proliferator-activated receptor gamma
[Sarcophilus harrisii]
Length = 475
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 127/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 248 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 284
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 285 FRS--VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 342
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 343 QGFMTREFLKSL 354
>gi|71060009|emb|CAJ18548.1| Pparg [Mus musculus]
Length = 505
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 127/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 278 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 373 QGFMTREFLKSL 384
>gi|335298750|ref|XP_001928500.3| PREDICTED: thyroid hormone receptor beta [Sus scrofa]
Length = 461
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 128 KGFFRRTIQKNLHPSYACKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 187
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 188 KRKLIEENREKRRREELQRSIGHKPE------------PTDQE--------WELIKTVTE 227
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 228 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 278
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 279 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 338
Query: 233 QQLE 236
QL+
Sbjct: 339 GQLK 342
>gi|47523814|ref|NP_999544.1| peroxisome proliferator-activated receptor gamma [Sus scrofa]
gi|13431782|sp|O62807.1|PPARG_PIG RecName: Full=Peroxisome proliferator-activated receptor gamma;
Short=PPAR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group C member 3
gi|3065957|gb|AAC14348.1| peroxisome proliferator-activated receptor gamma 2 [Sus scrofa]
gi|4378477|gb|AAD19577.1| peroxisome proliferator activated receptor gamma 2 [Sus scrofa]
gi|47678889|dbj|BAD20646.1| peroxisome proliferator-activated receptor gamma 2 [Sus scrofa]
Length = 504
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 159 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 216
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 217 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 276
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 277 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 313
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 314 FRS--VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 371
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 372 QGFMTREFLK 381
>gi|403270242|ref|XP_003927097.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
1 [Saimiri boliviensis boliviensis]
Length = 475
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 248 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 284
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 285 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 342
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 343 QGFMTREFLK 352
>gi|298676423|ref|NP_001177320.1| thyroid hormone receptor beta [Ovis aries]
gi|297241705|gb|ADI24672.1| thyroid hormone receptor beta isoform [Ovis aries]
Length = 459
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 126 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 185
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 186 KRKLIEENREKRRREELQRSMGHKPE------------PTDQE--------WELIKTVTE 225
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 226 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 276
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 277 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 336
Query: 233 QQLE 236
QL+
Sbjct: 337 GQLK 340
>gi|6981386|ref|NP_037256.1| peroxisome proliferator-activated receptor gamma isoform 1 [Rattus
norvegicus]
gi|13431783|sp|O88275.2|PPARG_RAT RecName: Full=Peroxisome proliferator-activated receptor gamma;
Short=PPAR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group C member 3
gi|5107415|gb|AAD40119.1|AF156666_1 peroxisome proliferator-activated receptor gamma 2 [Rattus
norvegicus]
gi|4115709|dbj|BAA36485.1| PPAR gamma2 [Rattus norvegicus]
gi|149049700|gb|EDM02154.1| peroxisome proliferator activated receptor gamma, isoform CRA_a
[Rattus norvegicus]
Length = 505
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + G ++ K ++ P + S EVA R++ Q
Sbjct: 278 YDMNSLMM------------GEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 373 QGFMTREFLK 382
>gi|2605497|dbj|BAA23354.1| peroxisome proliferator activated-receptor gamma [Homo sapiens]
Length = 474
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 132 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 189
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 190 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 249
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 250 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 286
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 287 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 344
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 345 QGFMTREFLK 354
>gi|90823203|gb|ABE01103.1| peroxisome proliferator-activated receptor gamma 2 [Sus scrofa]
Length = 504
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 159 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 216
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 217 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 276
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 277 YDM------------NSLMMGEDKIKFKHIT--PLQEHSKEVAI---------RIFQGCQ 313
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 314 FRS--VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 371
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 372 QGFMTREFLK 381
>gi|2645733|gb|AAB87481.1| peroxisome proliferator-activated receptor gamma 1-a [Macaca
mulatta]
gi|2645735|gb|AAB87482.1| peroxisome proliferator-activated receptor gamma 1-b [Macaca
mulatta]
Length = 475
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 248 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 284
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 285 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 342
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 343 QGFMTREFLK 352
>gi|296225874|ref|XP_002758687.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
3 [Callithrix jacchus]
Length = 475
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 248 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 284
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 285 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 342
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 343 QGFMTREFLK 352
>gi|7446201|pir||JE0279 peroxisome proliferator-activated receptor gamma 1 - pig
gi|3646468|emb|CAA07224.1| peroxisome proliferator-cctivated receptor gamma 1 [Sus scrofa]
Length = 475
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 125/249 (50%), Gaps = 43/249 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 248 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 284
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 285 FRS--VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 342
Query: 228 M-YVTRQQL 235
++TR+ L
Sbjct: 343 QGFMTREFL 351
>gi|12584576|emb|CAA73382.2| peroxisome proliferator activated receptor (PPAR) gamma 2 [Rattus
norvegicus]
Length = 505
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + G ++ K ++ P + S EVA R++ Q
Sbjct: 278 YDMNSLMM------------GEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 373 QGFMTREFLKSL 384
>gi|169743247|gb|ACA66245.1| thyroid hormone receptor beta isoform 2 [Oryctolagus cuniculus]
Length = 421
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 123/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ V M+ D V R+
Sbjct: 88 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVDMATDLVLDDSKRLA 147
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +D+I V++
Sbjct: 148 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WDLIKTVTE 187
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 188 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 238
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R DS +LT + M VTR
Sbjct: 239 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVTR 298
Query: 233 QQLE 236
QL+
Sbjct: 299 GQLK 302
>gi|3646470|emb|CAA07225.1| peroxisome proliferator-activated receptor-gamma 2 [Sus scrofa]
Length = 504
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 125/249 (50%), Gaps = 43/249 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 159 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 216
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 217 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 276
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 277 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 313
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 314 FRS--VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 371
Query: 228 M-YVTRQQL 235
++TR+ L
Sbjct: 372 QGFMTREFL 380
>gi|440910600|gb|ELR60380.1| Retinoic acid receptor RXR-gamma, partial [Bos grunniens mutus]
Length = 447
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 144 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 201
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE AE +S PV+ + + LAV S
Sbjct: 202 ERAESE----------AECANSGHEDMPVERI-------------LEAELAVEPKTES-- 236
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + T PV T CH + + Q F +VE+
Sbjct: 237 -YGDMNTENSTNDPV---------------TNICHAADK----QLFT---------LVEW 267
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 268 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 319
>gi|147904405|ref|NP_001091096.1| peroxisome proliferators-activated receptor gamma [Takifugu
rubripes]
gi|138997034|dbj|BAF52670.1| peroxisome proliferators-activated receptor gamma [Takifugu
rubripes]
Length = 518
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 115/251 (45%), Gaps = 19/251 (7%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y C D C + + +RN+CQYCRF+KCL VGMS +++R+GR+P+
Sbjct: 147 RGFFRRTIRLKLVYDHC--DLHCRIHKKSRNKCQYCRFQKCLNVGMSHNAIRFGRMPQAE 204
Query: 62 RER------SDSETGSTRVSTTGAEPPSSLE--------TAGPVQSLPSSTELDTKQLLT 107
+E+ SD E + A E T +++ S D +
Sbjct: 205 KEKLLAEFSSDLEHMHPEAADLRALSRHLYEAYLKNFPLTKAKARAILSGKAGDKAPFVI 264
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEV-ASSTAECHESQRLWLWQ 166
+D+ + NC + +L P E S + L +
Sbjct: 265 HDMKSLMEGEQFINCRQIPCQEHHQQQLAPALAPGLAGLTEAHCGSDGNISDELELRFFN 324
Query: 167 QFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSD 226
+ +V+ V EFAK +PGF DL +DQ+ L+K G E+ I ++ L S
Sbjct: 325 SCQSRSVEAVREVTEFAKSIPGFIDLDLNDQVTLLKYGVIEILIIMMAPLMNKDGTLISY 384
Query: 227 G-MYVTRQQLE 236
G +++TR+ L+
Sbjct: 385 GQIFMTREFLK 395
>gi|431916836|gb|ELK16596.1| Peroxisome proliferator-activated receptor delta [Pteropus alecto]
Length = 441
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 117/253 (46%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 152
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + + L + Q P +L Y+ L N
Sbjct: 153 KRKL----------------VAGLTASEGSQHNPQVADLKAFSKHIYNAYL-------KN 189
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 190 FNMTKKKARGILTGKTSH-----TAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISIH 244
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F +L +DQ+ L+K G E ++ + L
Sbjct: 245 VFYRCQCTTVETVRELTEFAKSIPSFGNLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 304
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 305 VANGTGFVTREFL 317
>gi|281347607|gb|EFB23191.1| hypothetical protein PANDA_010204 [Ailuropoda melanoleuca]
Length = 478
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 133 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 190
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 191 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 250
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 251 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 287
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 288 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 345
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 346 QGFMTREFLK 355
>gi|149728268|ref|XP_001492480.1| PREDICTED: peroxisome proliferator-activated receptor gamma-like
isoform 2 [Equus caballus]
Length = 474
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 129 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 186
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 187 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 246
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 247 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 283
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 284 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 341
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 342 QGFMTREFLK 351
>gi|410036561|ref|XP_003950079.1| PREDICTED: peroxisome proliferator-activated receptor gamma [Pan
troglodytes]
gi|426339482|ref|XP_004033679.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
1 [Gorilla gorilla gorilla]
gi|426339486|ref|XP_004033681.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
3 [Gorilla gorilla gorilla]
Length = 477
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 132 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 189
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 190 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 249
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + G ++ K ++ P + S EVA R++ Q
Sbjct: 250 YDMNSLMM------------GEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 286
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 287 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 344
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 345 QGFMTREFLK 354
>gi|60654177|gb|AAX29781.1| peroxisome proliferative activated receptor gamma [synthetic
construct]
gi|60830772|gb|AAX36944.1| peroxisome proliferative activated receptor gamma [synthetic
construct]
Length = 476
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 248 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 284
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 285 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 342
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 343 QGFMTREFLK 352
>gi|54696118|gb|AAV38431.1| thyroid hormone receptor, alpha (erythroblastic leukemia viral
(v-erb-a) oncogene homolog, avian) [synthetic construct]
gi|61365614|gb|AAX42736.1| thyroid hormone receptor alpha [synthetic construct]
Length = 452
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 120/246 (48%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+G FRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGLFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHI 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|62898788|dbj|BAD97248.1| peroxisome proliferative activated receptor gamma isoform 2 variant
[Homo sapiens]
Length = 478
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 133 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 190
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 191 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 250
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + G ++ K ++ P + S EVA R++ Q
Sbjct: 251 YDMNSLMM------------GEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 287
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 288 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 345
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 346 QGFMTREFLK 355
>gi|50882284|gb|AAT85617.1| peroxisome proliferator-activated receptor gamma [Dicentrarchus
labrax]
Length = 522
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 23/252 (9%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y C D C + + +RN+CQYCRF+KCL VGMS +++R+GR+P+
Sbjct: 153 KGFFRRTIRLKLVYDHC--DLHCRIHKKSRNKCQYCRFQKCLNVGMSHNAIRFGRMPQAE 210
Query: 62 RER------SDSETGSTRVSTTGAEPPSSLE--------TAGPVQSLPSSTELDTKQLLT 107
+E+ SD E + A E T +++ S D +
Sbjct: 211 KEKLLAEFSSDMEHMHPEAADLRALSRHLYEAYLKYFPLTKAKARAILSGKTGDNAPFVI 270
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECH--ESQRLWLW 165
+D+ + NC+ + +S+ + + S EC+ ++ L +
Sbjct: 271 HDMKSLMEGEQFINCKQIPTQEHQPQTSALSVGHGGLMGAHLGS---ECNILDAVELRFF 327
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTT-DSSLTF 224
+ +V+ V EFAK +PGF +L +DQ+ L+K G E+ I ++ L D +L
Sbjct: 328 HSCQSRSAEAVREVTEFAKSIPGFINLDLNDQVTLLKYGVIEVLIIMMAPLMNKDGTLIA 387
Query: 225 SDGMYVTRQQLE 236
+++TR+ L+
Sbjct: 388 YGQIFMTREFLK 399
>gi|410951730|ref|XP_003982546.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
2 [Felis catus]
Length = 475
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 127/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 248 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 284
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 285 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 342
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 343 QGFMTREFLKSL 354
>gi|397511915|ref|XP_003826307.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
2 [Pan paniscus]
Length = 477
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 132 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 189
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 190 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 249
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + G ++ K ++ P + S EVA R++ Q
Sbjct: 250 YDMNSLMM------------GEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 286
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 287 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 344
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 345 QGFMTREFLK 354
>gi|216409692|dbj|BAH02283.1| peroxisome proliferator activated receptor gamma [Homo sapiens]
Length = 477
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 132 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 189
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 190 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 249
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 250 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 286
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 287 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 344
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 345 QGFMTREFLK 354
>gi|1490314|emb|CAA62153.1| peroxisome proliferator activated receptor gamma [Homo sapiens]
gi|48762805|gb|AAN38992.2| peroxisome proliferative activated receptor gamma [Homo sapiens]
gi|60819360|gb|AAX36497.1| peroxisome proliferative activated receptor gamma [synthetic
construct]
gi|61363113|gb|AAX42337.1| peroxisome proliferative activated receptor gamma [synthetic
construct]
gi|158254594|dbj|BAF83270.1| unnamed protein product [Homo sapiens]
Length = 475
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + G ++ K ++ P + S EVA R++ Q
Sbjct: 248 YDMNSLMM------------GEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 284
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 285 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 342
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 343 QGFMTREFLKSL 354
>gi|116284368|ref|NP_005028.4| peroxisome proliferator-activated receptor gamma isoform 1 [Homo
sapiens]
gi|116284370|ref|NP_619726.2| peroxisome proliferator-activated receptor gamma isoform 1 [Homo
sapiens]
gi|116284373|ref|NP_619725.2| peroxisome proliferator-activated receptor gamma isoform 1 [Homo
sapiens]
gi|1490313|emb|CAA62152.1| peroxisome proliferator activated receptor gamma [Homo sapiens]
gi|13905056|gb|AAH06811.1| Peroxisome proliferator-activated receptor gamma [Homo sapiens]
gi|17978516|gb|AAA80314.2| peroxisome proliferator activated receptor gamma [Homo sapiens]
gi|30583401|gb|AAP35945.1| peroxisome proliferative activated receptor, gamma [Homo sapiens]
gi|60654873|gb|AAX32001.1| peroxisome proliferative activated receptor gamma [synthetic
construct]
gi|119584527|gb|EAW64123.1| peroxisome proliferative activated receptor, gamma, isoform CRA_a
[Homo sapiens]
gi|123980410|gb|ABM82034.1| peroxisome proliferative activated receptor, gamma [synthetic
construct]
gi|123995227|gb|ABM85215.1| peroxisome proliferative activated receptor, gamma [synthetic
construct]
gi|261859986|dbj|BAI46515.1| peroxisome proliferator-activated receptor gamma [synthetic
construct]
gi|283132454|dbj|BAI63629.1| peroxisome proliferative activated receptor gamma isoform 6 variant
[Homo sapiens]
gi|325495543|gb|ADZ17377.1| peroxisome proliferator-activated nuclear receptor gamma variant 1
[Homo sapiens]
gi|428229099|dbj|BAM71699.1| peroxisome proliferative activated receptor gamma [Homo sapiens]
Length = 477
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 132 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 189
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 190 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 249
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 250 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 286
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 287 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 344
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 345 QGFMTREFLK 354
>gi|440905288|gb|ELR55684.1| Thyroid hormone receptor beta, partial [Bos grunniens mutus]
Length = 463
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 143 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 202
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 203 KRKLIEENREKRRREELQRSMGHKPE------------PTDQE--------WELIKTVTE 242
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 243 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 293
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 294 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 353
Query: 233 QQLE 236
QL+
Sbjct: 354 GQLK 357
>gi|403301502|ref|XP_003941427.1| PREDICTED: retinoic acid receptor RXR-alpha [Saimiri boliviensis
boliviensis]
Length = 365
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 59 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 116
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 117 DRNENEVEST----------SSANEDMPVERI-------------LEAELAV-------- 145
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V V L PS + P T C + + Q F +VE+
Sbjct: 146 ---EPKTETYVEANVGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 185
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 186 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 238
>gi|395844547|ref|XP_003795021.1| PREDICTED: retinoic acid receptor RXR-alpha [Otolemur garnettii]
Length = 487
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 110/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 181 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 238
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ERS++E ST SS PV+ + + LAV
Sbjct: 239 ERSENEVEST----------SSASEDMPVEKI-------------LEAELAV-------- 267
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V L PS + P T C + + Q F +VE+
Sbjct: 268 ---EPKTGACVEASTGLHPSSPNDP----VTNICQAADK----QLFT---------LVEW 307
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 308 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 360
>gi|14994054|gb|AAK76401.1| Rev-Erb beta [Takifugu rubripes]
Length = 480
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 53/61 (86%), Gaps = 1/61 (1%)
Query: 5 FFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRE 63
FFRRSIQ+ I+Y+ CL+ C ++R+NRNRCQ CRFKKCLAVGMSRD+VR+GR+PK+ ++
Sbjct: 18 FFRRSIQQNIQYKKCLKMENCTIVRINRNRCQQCRFKKCLAVGMSRDAVRFGRIPKKEKQ 77
Query: 64 R 64
R
Sbjct: 78 R 78
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+VQ VV+FAKR+PGF DL ++DQ+ L+K G FE+ + + L + +
Sbjct: 317 IWEEFSMSFTPAVQEVVDFAKRIPGFRDLPKNDQVSLLKAGTFEVLMVRFASLFNAAERT 376
Query: 222 LTFSDG 227
+TF G
Sbjct: 377 VTFLSG 382
>gi|226131|prf||1411299B thyroid hormone receptor alpha 2
Length = 492
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 120/246 (48%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AV M+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVAMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|332231708|ref|XP_003265036.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
1 [Nomascus leucogenys]
gi|332231712|ref|XP_003265038.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
3 [Nomascus leucogenys]
gi|332231714|ref|XP_003265039.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
4 [Nomascus leucogenys]
gi|441665312|ref|XP_004091803.1| PREDICTED: peroxisome proliferator-activated receptor gamma
[Nomascus leucogenys]
gi|441665315|ref|XP_004091804.1| PREDICTED: peroxisome proliferator-activated receptor gamma
[Nomascus leucogenys]
Length = 477
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 132 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 189
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 190 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 249
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 250 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 286
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 287 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 344
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 345 QGFMTREFLK 354
>gi|301774943|ref|XP_002922885.1| PREDICTED: peroxisome proliferator-activated receptor alpha-like
[Ailuropoda melanoleuca]
gi|281348935|gb|EFB24519.1| hypothetical protein PANDA_011925 [Ailuropoda melanoleuca]
Length = 468
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 116/252 (46%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+++ ++ Y RC D C + + NRN+CQYCRF KCL+VGMS +++R+GR+P+
Sbjct: 123 KGFFRRTVRLKLAYDRC--DRHCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSE 180
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + +E T P ETA D K L + +A+ N
Sbjct: 181 KAKLKAEI------LTCEHEPEDAETA------------DLKSLAK-----RIYEAYLKN 217
Query: 122 CEYTEEGTRR-LVRKPVSLPPSEVSSPE-------------VASSTAECHESQRLWLWQQ 167
+ R L K + PP + E VA+ R++ Q
Sbjct: 218 FNMNKVKARVILAGKASNNPPFVIHDMETLCMAEKTLVAKLVANGIQNKEAEVRIFHCCQ 277
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR-LTTDSSLTFSD 226
+ +V + EFAK +PGF +L +DQ+ L+K G +E +S + D L
Sbjct: 278 CTS--VETVTELTEFAKSIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYG 335
Query: 227 GMYVTRQQLEVM 238
++TR+ L+ +
Sbjct: 336 NGFITREFLKSL 347
>gi|194225999|ref|XP_001917400.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Equus caballus]
Length = 587
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 281 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 338
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 339 DRNENEVEST----------SSANEDMPVEKI-------------LEAELAV-------- 367
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V V L PS + P T C + + Q F +VE+
Sbjct: 368 ---EPKTEAYVEANVGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 407
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 408 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 460
>gi|338714446|ref|XP_001492461.2| PREDICTED: peroxisome proliferator-activated receptor gamma-like
isoform 1 [Equus caballus]
Length = 528
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 127/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 183 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 240
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 241 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 300
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 301 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 337
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 338 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 395
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 396 QGFMTREFLKSL 407
>gi|17942647|pdb|1HLZ|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
gi|17942648|pdb|1HLZ|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
gi|17942651|pdb|1GA5|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
gi|17942652|pdb|1GA5|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
gi|17942653|pdb|1GA5|E Chain E, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
gi|17942654|pdb|1GA5|F Chain F, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
gi|157838075|pdb|1A6Y|A Chain A, Reverba Orphan Nuclear ReceptorDNA COMPLEX
gi|157838076|pdb|1A6Y|B Chain B, Reverba Orphan Nuclear ReceptorDNA COMPLEX
Length = 94
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 31 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 90
Query: 62 RER 64
++R
Sbjct: 91 KQR 93
>gi|18175313|gb|AAL59880.1| peroxisome proliferator activated receptor isoform b [Pimephales
promelas]
Length = 233
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 115/244 (47%), Gaps = 54/244 (22%)
Query: 13 QIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRERSDSETGS 71
++EY RC R C V++ +RN+CQYCRF+KCLA+GMS D++RYGR+P+ +++
Sbjct: 2 KLEYERCER--ACKVLKKSRNKCQYCRFQKCLALGMSHDAIRYGRMPEAEKKKL------ 53
Query: 72 TRVSTTGAEPPSSLETAGPV--QSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGT 129
AG + ++L SS+ D K L + V+ A+ N T++
Sbjct: 54 ---------------VAGLLAGENLKSSSGADLKTLAKH-----VNTAYLKNLNMTKKKA 93
Query: 130 RRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF---------AAHV-------- 172
R ++ S ++P V +++ +W Q HV
Sbjct: 94 RSILTGKTS-----CTTPFVIHDMDSLWQAENGLVWNQLNGAPPNKEIGVHVFYRCQCTT 148
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVT 231
+V+ + EFAK +PGF DL +DQ+ L+K G E + L L ++G +VT
Sbjct: 149 VETVRELTEFAKNIPGFVDLFLNDQVTLLKYGVHESIFAMLPSLMNKDGLLVANGKGFVT 208
Query: 232 RQQL 235
R+ L
Sbjct: 209 REFL 212
>gi|301771798|ref|XP_002921313.1| PREDICTED: peroxisome proliferator-activated receptor gamma-like
[Ailuropoda melanoleuca]
Length = 529
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 127/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 184 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 241
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 242 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 301
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 302 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 338
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 339 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 396
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 397 QGFMTREFLKSL 408
>gi|296228217|ref|XP_002759704.1| PREDICTED: thyroid hormone receptor beta isoform 2 [Callithrix
jacchus]
Length = 461
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 128 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 187
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 188 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 227
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 228 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 278
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 279 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 338
Query: 233 QQLE 236
QL+
Sbjct: 339 GQLK 342
>gi|109070868|ref|XP_001116676.1| PREDICTED: peroxisome proliferator-activated receptor delta isoform
2 [Macaca mulatta]
Length = 441
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 118/253 (46%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 152
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + V+ A S Q P +L Y+ L N
Sbjct: 153 KRK--------LVAGLTANEGS--------QYNPQVADLKAFSKHIYNAYL-------KN 189
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 190 FNMTKKKARSILTGKAS-----HTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVH 244
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ ++EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 245 VFYRCQCTTVETVRELIEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 304
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 305 VANGSGFVTREFL 317
>gi|3024414|sp|O19052.1|PPARG_RABIT RecName: Full=Peroxisome proliferator-activated receptor gamma;
Short=PPAR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group C member 3
gi|2231587|gb|AAB96380.1| peroxisome proliferator activated receptor gamma-1 [Oryctolagus
cuniculus]
Length = 475
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 125/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 248 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 284
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 285 FRS--VEAVQEITEYAKNIPGFVSLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 342
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 343 QGFMTREFLK 352
>gi|403270244|ref|XP_003927098.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
2 [Saimiri boliviensis boliviensis]
Length = 505
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 127/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 278 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 373 QGFMTREFLKSL 384
>gi|403261652|ref|XP_003923229.1| PREDICTED: peroxisome proliferator-activated receptor delta
[Saimiri boliviensis boliviensis]
Length = 441
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 115/253 (45%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 152
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + + + S Q P +L Y+ L N
Sbjct: 153 KRKLVAGLTANEGS----------------QYNPQVADLKAFSQHIYNAYL-------KN 189
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S P P V ++++ +W+Q + P
Sbjct: 190 FNMTKKKARSILTGKASHTP-----PFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVH 244
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 245 VFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 304
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 305 VANGSGFVTREFL 317
>gi|14994049|gb|AAK76399.1| peroxisome proliferator-activated receptor beta [Salmo salar]
Length = 337
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 41/232 (17%)
Query: 23 KCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRERSDSETGSTRVSTTGAEPP 82
+C + + +RN+CQYCRF+KCL +GMS D++RYGR+P+ + + + G P
Sbjct: 4 RCKIQKKSRNKCQYCRFQKCLLLGMSHDAIRYGRMPEAEKRKLVAGL------LAGDTAP 57
Query: 83 SSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPS 142
++ ++SL V+ A+ N T++ R ++ S P
Sbjct: 58 TTNPNGSDLKSLAKR----------------VNNAYLKNLNMTKKKARSILTGKNSSSPV 101
Query: 143 EVSSPEVASSTAECHESQRLWLWQQFAAHVTP------------------SVQRVVEFAK 184
P V H+++ +W Q P +V+ + EFAK
Sbjct: 102 AYPYPFVIHDMDSLHQAENGLVWNQLINGTPPNKEIGVHVFYRCQCTTVETVRELTEFAK 161
Query: 185 RVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQQL 235
+PGF DL +DQ+ L+K G E + L L ++G +VTR+ L
Sbjct: 162 SIPGFVDLFLNDQVTLLKYGVHEAIFAMLPSLMNKDGLLVANGKGFVTREFL 213
>gi|27752867|gb|AAO19445.1| proliferator activated receptor-gamma1 [Capra hircus]
Length = 475
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 123/251 (49%), Gaps = 45/251 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLYCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGP-----VQSLP----------SSTELDTKQLL 106
+E+ +E S+ + E A ++S P + D +
Sbjct: 188 KEKLLAEI-SSDIDQLNPESADLRALAKHLYDSYIKSFPLTRAKARAILTGKTTDKSPFV 246
Query: 107 TYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQ 166
YD+ G ++ K +S P + S EVA R++
Sbjct: 247 IYDM------------NSLMMGEDKIKFKHIS--PLQEPSKEVAI---------RIFQGC 283
Query: 167 QFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSD 226
QF + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+
Sbjct: 284 QFRS--VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 341
Query: 227 GM-YVTRQQLE 236
G ++TR+ L+
Sbjct: 342 GQGFMTREFLK 352
>gi|15723730|gb|AAL05261.1| peroxisome proliferator-activated receptor gamma 1 [Macaca
fascicularis]
gi|15723734|gb|AAL05263.1| peroxisome proliferator-activated receptor gamma 3 [Macaca
fascicularis]
gi|21552437|gb|AAL05268.1| peroxisome proliferator-activated receptor gamma 5 [Macaca
fascicularis]
gi|21552441|gb|AAL05270.1| peroxisome proliferator-activated receptor gamma 7 [Macaca
fascicularis]
Length = 475
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 248 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 284
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 285 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVFISEG 342
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 343 QGFMTREFLK 352
>gi|50978780|ref|NP_001003093.1| peroxisome proliferator-activated receptor alpha [Canis lupus
familiaris]
gi|24418624|sp|Q95N78.1|PPARA_CANFA RecName: Full=Peroxisome proliferator-activated receptor alpha;
Short=PPAR-alpha; AltName: Full=Nuclear receptor
subfamily 1 group C member 1
gi|13752442|gb|AAK38655.1|AF350327_1 peroxisome proliferator activated receptor alpha [Canis lupus
familiaris]
Length = 468
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 117/252 (46%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y +C D C + + NRN+CQYCRF KCL+VGMS +++R+GR+P+
Sbjct: 123 KGFFRRTIRLKLAYDKC--DRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSE 180
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + +E T + P ETA D K L + +A+ N
Sbjct: 181 KAKLKAEI------LTCEQDPEDAETA------------DLKSLAK-----RIYEAYLKN 217
Query: 122 CEYTEEGTRR-LVRKPVSLPPSEVSSPE-------------VASSTAECHESQRLWLWQQ 167
+ R L K + PP + E VA+ R++ Q
Sbjct: 218 FNMNKVKARVILAGKASNNPPFVIHDMETLCMAEKTLVAKLVANGIQNKEAEVRIFHCCQ 277
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR-LTTDSSLTFSD 226
+ +V + EFAK +PGF +L +DQ+ L+K G +E +S + D L
Sbjct: 278 CTS--VETVTELTEFAKSIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYG 335
Query: 227 GMYVTRQQLEVM 238
++TR+ L+ +
Sbjct: 336 NGFITREFLKSL 347
>gi|40806162|ref|NP_000452.2| thyroid hormone receptor beta [Homo sapiens]
gi|189491769|ref|NP_001121648.1| thyroid hormone receptor beta [Homo sapiens]
gi|189491771|ref|NP_001121649.1| thyroid hormone receptor beta [Homo sapiens]
gi|358001057|ref|NP_001239563.1| thyroid hormone receptor beta [Homo sapiens]
gi|114585713|ref|XP_001163850.1| PREDICTED: thyroid hormone receptor beta isoform 2 [Pan
troglodytes]
gi|114585717|ref|XP_001163914.1| PREDICTED: thyroid hormone receptor beta isoform 4 [Pan
troglodytes]
gi|114585723|ref|XP_001164073.1| PREDICTED: thyroid hormone receptor beta isoform 8 [Pan
troglodytes]
gi|114585727|ref|XP_001164153.1| PREDICTED: thyroid hormone receptor beta isoform 10 [Pan
troglodytes]
gi|332215366|ref|XP_003256814.1| PREDICTED: thyroid hormone receptor beta isoform 1 [Nomascus
leucogenys]
gi|332215368|ref|XP_003256815.1| PREDICTED: thyroid hormone receptor beta isoform 2 [Nomascus
leucogenys]
gi|332215370|ref|XP_003256816.1| PREDICTED: thyroid hormone receptor beta isoform 3 [Nomascus
leucogenys]
gi|397511699|ref|XP_003826205.1| PREDICTED: thyroid hormone receptor beta isoform 1 [Pan paniscus]
gi|397511701|ref|XP_003826206.1| PREDICTED: thyroid hormone receptor beta isoform 2 [Pan paniscus]
gi|397511703|ref|XP_003826207.1| PREDICTED: thyroid hormone receptor beta isoform 3 [Pan paniscus]
gi|397511705|ref|XP_003826208.1| PREDICTED: thyroid hormone receptor beta isoform 4 [Pan paniscus]
gi|426339732|ref|XP_004033797.1| PREDICTED: thyroid hormone receptor beta isoform 1 [Gorilla gorilla
gorilla]
gi|426339734|ref|XP_004033798.1| PREDICTED: thyroid hormone receptor beta isoform 2 [Gorilla gorilla
gorilla]
gi|426339736|ref|XP_004033799.1| PREDICTED: thyroid hormone receptor beta isoform 3 [Gorilla gorilla
gorilla]
gi|426339738|ref|XP_004033800.1| PREDICTED: thyroid hormone receptor beta isoform 4 [Gorilla gorilla
gorilla]
gi|441611020|ref|XP_004087984.1| PREDICTED: thyroid hormone receptor beta [Nomascus leucogenys]
gi|586092|sp|P10828.2|THB_HUMAN RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear
receptor subfamily 1 group A member 2; AltName:
Full=c-erbA-2; AltName: Full=c-erbA-beta
gi|76827091|gb|AAI06930.1| Thyroid hormone receptor, beta (erythroblastic leukemia viral
(v-erb-a) oncogene homolog 2, avian) [Homo sapiens]
gi|76827895|gb|AAI06931.1| THRB protein [Homo sapiens]
gi|119584749|gb|EAW64345.1| thyroid hormone receptor, beta (erythroblastic leukemia viral
(v-erb-a) oncogene homolog 2, avian), isoform CRA_a
[Homo sapiens]
gi|119584750|gb|EAW64346.1| thyroid hormone receptor, beta (erythroblastic leukemia viral
(v-erb-a) oncogene homolog 2, avian), isoform CRA_a
[Homo sapiens]
gi|119584751|gb|EAW64347.1| thyroid hormone receptor, beta (erythroblastic leukemia viral
(v-erb-a) oncogene homolog 2, avian), isoform CRA_a
[Homo sapiens]
gi|119584752|gb|EAW64348.1| thyroid hormone receptor, beta (erythroblastic leukemia viral
(v-erb-a) oncogene homolog 2, avian), isoform CRA_a
[Homo sapiens]
gi|119584753|gb|EAW64349.1| thyroid hormone receptor, beta (erythroblastic leukemia viral
(v-erb-a) oncogene homolog 2, avian), isoform CRA_a
[Homo sapiens]
gi|167773517|gb|ABZ92193.1| thyroid hormone receptor, beta (erythroblastic leukemia viral
(v-erb-a) oncogene homolog 2, avian) [synthetic
construct]
gi|168277450|dbj|BAG10703.1| thyroid hormone receptor beta-1 [synthetic construct]
gi|193788447|dbj|BAG53341.1| unnamed protein product [Homo sapiens]
gi|325495461|gb|ADZ17336.1| thyroid hormone nuclear receptor beta variant 1 [Homo sapiens]
gi|410211582|gb|JAA03010.1| thyroid hormone receptor, beta (erythroblastic leukemia viral
(v-erb-a) oncogene homolog 2, avian) [Pan troglodytes]
gi|410211584|gb|JAA03011.1| thyroid hormone receptor, beta (erythroblastic leukemia viral
(v-erb-a) oncogene homolog 2, avian) [Pan troglodytes]
gi|410293620|gb|JAA25410.1| thyroid hormone receptor, beta (erythroblastic leukemia viral
(v-erb-a) oncogene homolog 2, avian) [Pan troglodytes]
gi|410339269|gb|JAA38581.1| thyroid hormone receptor, beta (erythroblastic leukemia viral
(v-erb-a) oncogene homolog 2, avian) [Pan troglodytes]
Length = 461
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 128 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 187
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 188 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 227
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 228 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 278
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 279 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 338
Query: 233 QQLE 236
QL+
Sbjct: 339 GQLK 342
>gi|355561621|gb|EHH18253.1| hypothetical protein EGK_14816 [Macaca mulatta]
gi|355748489|gb|EHH52972.1| hypothetical protein EGM_13521 [Macaca fascicularis]
gi|380813958|gb|AFE78853.1| peroxisome proliferator-activated receptor delta isoform 1 [Macaca
mulatta]
gi|383412973|gb|AFH29700.1| peroxisome proliferator-activated receptor delta isoform 1 [Macaca
mulatta]
gi|384939384|gb|AFI33297.1| peroxisome proliferator-activated receptor delta isoform 1 [Macaca
mulatta]
Length = 441
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 117/253 (46%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 152
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + + + S Q P +L Y+ L N
Sbjct: 153 KRKLVAGLTANEGS----------------QYNPQVADLKAFSKHIYNAYL-------KN 189
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 190 FNMTKKKARSILTGKAS-----HTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVH 244
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ ++EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 245 VFYRCQCTTVETVRELIEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 304
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 305 VANGSGFVTREFL 317
>gi|22003526|gb|AAM88773.1| peroxisome proliferator activated receptor-gamma 1 [Anas
platyrhynchos]
Length = 475
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 125/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 248 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 284
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 285 FRS--VEAVQEITEYAKNIPGFVSLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 342
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 343 QGFMTREFLK 352
>gi|334338609|ref|XP_001376147.2| PREDICTED: peroxisome proliferator-activated receptor gamma-like
[Monodelphis domestica]
Length = 475
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 127/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 188 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 247
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 248 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 284
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 285 FRS--VEAVQEITEYAKSIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 342
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 343 QGFMTREFLKSL 354
>gi|31209|emb|CAA68539.1| unnamed protein product [Homo sapiens]
Length = 490
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 120/246 (48%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AV M+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVAMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHI 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>gi|29169314|gb|AAO66458.1| CREB3L2-PPARgamma [Homo sapiens]
Length = 584
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 239 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 296
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 297 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 356
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + G ++ K ++ P + S EVA R++ Q
Sbjct: 357 YDMNSLMM------------GEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 393
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 394 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 451
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 452 QGFMTREFLKSL 463
>gi|426339484|ref|XP_004033680.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
2 [Gorilla gorilla gorilla]
Length = 505
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + G ++ K ++ P + S EVA R++ Q
Sbjct: 278 YDMNSLMM------------GEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 373 QGFMTREFLKSL 384
>gi|397511913|ref|XP_003826306.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
1 [Pan paniscus]
Length = 505
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + G ++ K ++ P + S EVA R++ Q
Sbjct: 278 YDMNSLMM------------GEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 373 QGFMTREFLKSL 384
>gi|395847245|ref|XP_003796291.1| PREDICTED: peroxisome proliferator-activated receptor gamma
[Otolemur garnettii]
Length = 505
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + G ++ K ++ P + S EVA R++ Q
Sbjct: 278 YDMNSLMM------------GEDKIKFKHIT--PVQEQSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 373 QGFMTREFLK 382
>gi|147732610|sp|A2T929.2|RXRAA_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-A;
AltName: Full=RXRalpha-B; AltName: Full=Retinoid X
receptor alpha-A
Length = 430
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 112/233 (48%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + C++ + RNRCQYCR++KCLA+GM R++V+ R +R++
Sbjct: 124 KGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRAK 181
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ERS++E ST SS PV+ + + LAV
Sbjct: 182 ERSENEVEST----------SSANEDMPVEKI-------------LEAELAV-------- 210
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T + V +P + + P T C + + Q F +VE+
Sbjct: 211 ---EPKTETYIETNVPMPSNSPNDP----VTNICQAADK----QLFT---------LVEW 250
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 251 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 303
>gi|109052494|ref|XP_001090554.1| PREDICTED: thyroid hormone receptor beta-like isoform 1 [Macaca
mulatta]
gi|109052497|ref|XP_001090678.1| PREDICTED: thyroid hormone receptor beta-like isoform 2 [Macaca
mulatta]
gi|109052506|ref|XP_001091145.1| PREDICTED: thyroid hormone receptor beta-like isoform 6 [Macaca
mulatta]
gi|109052509|ref|XP_001091273.1| PREDICTED: thyroid hormone receptor beta-like isoform 7 [Macaca
mulatta]
gi|402861705|ref|XP_003895225.1| PREDICTED: thyroid hormone receptor beta isoform 1 [Papio anubis]
gi|402861707|ref|XP_003895226.1| PREDICTED: thyroid hormone receptor beta isoform 2 [Papio anubis]
gi|402861709|ref|XP_003895227.1| PREDICTED: thyroid hormone receptor beta isoform 3 [Papio anubis]
gi|402861711|ref|XP_003895228.1| PREDICTED: thyroid hormone receptor beta isoform 4 [Papio anubis]
Length = 461
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 128 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 187
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 188 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 227
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 228 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 278
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 279 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 338
Query: 233 QQLE 236
QL+
Sbjct: 339 GQLK 342
>gi|115495279|ref|NP_001068876.1| retinoic acid receptor RXR-gamma [Bos taurus]
gi|119367365|sp|Q0VC20.1|RXRG_BOVIN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|111305288|gb|AAI20392.1| Retinoid X receptor, gamma [Bos taurus]
gi|296489911|tpg|DAA32024.1| TPA: retinoic acid receptor RXR-gamma [Bos taurus]
Length = 463
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 160 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 217
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE AE +S PV+ + + LAV S
Sbjct: 218 ERAESE----------AECANSGHEDMPVERI-------------LEAELAVEPKTES-- 252
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + T PV T CH + + Q F +VE+
Sbjct: 253 -YGDMNTENSTNDPV---------------TNICHAADK----QLFT---------LVEW 283
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 284 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>gi|20336229|ref|NP_056953.2| peroxisome proliferator-activated receptor gamma isoform 2 [Homo
sapiens]
gi|13432234|sp|P37231.3|PPARG_HUMAN RecName: Full=Peroxisome proliferator-activated receptor gamma;
Short=PPAR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group C member 3
gi|1432177|gb|AAB04028.1| peroxisome proliferator activated receptor gamma 2 [Homo sapiens]
gi|1711117|gb|AAC51248.1| ligand activated transcription factor PPARgamma2 [Homo sapiens]
gi|119584528|gb|EAW64124.1| peroxisome proliferative activated receptor, gamma, isoform CRA_b
[Homo sapiens]
gi|197692375|dbj|BAG70151.1| peroxisome proliferative activated receptor gamma isoform 2 [Homo
sapiens]
gi|197692673|dbj|BAG70300.1| peroxisome proliferative activated receptor gamma isoform 2 [Homo
sapiens]
Length = 505
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + G ++ K ++ P + S EVA R++ Q
Sbjct: 278 YDMNSLMM------------GEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 373 QGFMTREFLKSL 384
>gi|431899941|gb|ELK07888.1| Peroxisome proliferator-activated receptor gamma [Pteropus alecto]
Length = 556
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + G ++ K ++ P + S EVA R++ Q
Sbjct: 278 YDMNSLMM------------GEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 373 QGFMTREFLKSL 384
>gi|426217053|ref|XP_004002768.1| PREDICTED: retinoic acid receptor RXR-gamma [Ovis aries]
Length = 463
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 160 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 217
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE AE +S PV+ + + LAV S
Sbjct: 218 ERAESE----------AECANSGHEDMPVERI-------------LEAELAVEPKTES-- 252
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + T PV T CH + + Q F +VE+
Sbjct: 253 -YGDMNTENSTNDPV---------------TNICHAADK----QLFT---------LVEW 283
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 284 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>gi|410951728|ref|XP_003982545.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
1 [Felis catus]
Length = 505
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 127/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 278 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 373 QGFMTREFLKSL 384
>gi|345789103|ref|XP_862690.2| PREDICTED: thyroid hormone receptor beta isoform 10 [Canis lupus
familiaris]
Length = 461
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 128 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 187
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 188 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 227
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 228 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 278
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 279 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 338
Query: 233 QQLE 236
QL+
Sbjct: 339 GQLK 342
>gi|114585446|ref|XP_001153669.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
3 [Pan troglodytes]
Length = 505
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + G ++ K ++ P + S EVA R++ Q
Sbjct: 278 YDMNSLMM------------GEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 373 QGFMTREFLKSL 384
>gi|66864891|ref|NP_001019803.1| peroxisome proliferator-activated receptor gamma [Canis lupus
familiaris]
gi|75068622|sp|Q4U3Q4.1|PPARG_CANFA RecName: Full=Peroxisome proliferator-activated receptor gamma;
Short=PPAR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group C member 3
gi|63195114|gb|AAY34942.1| peroxisome proliferator-activated receptor gamma [Canis lupus
familiaris]
Length = 505
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + G ++ K ++ P + S EVA R++ Q
Sbjct: 278 YDMNSLMM------------GEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 373 QGFMTREFLKSL 384
>gi|417400991|gb|JAA47402.1| Putative peroxisome proliferator-activated receptor delta [Desmodus
rotundus]
Length = 441
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 152
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + V+ A S L P +L Y L N
Sbjct: 153 KRK--------LVAGLTASEGSQLN--------PQVADLKAFSKHIYSAYL-------KN 189
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 190 FNMTKKKARGILTGKTS-----HTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVH 244
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F +L +DQ+ L+K G E ++ + L
Sbjct: 245 VFYRCQCTTVETVRELTEFAKSIPSFGNLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 304
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 305 VANGTGFVTREFL 317
>gi|21552435|gb|AAL05267.1| peroxisome proliferator-activated receptor gamma 4 [Macaca
fascicularis]
gi|21552439|gb|AAL05269.1| peroxisome proliferator-activated receptor gamma 6 [Macaca
fascicularis]
Length = 483
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 138 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 195
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 196 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 255
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 256 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 292
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 293 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVFISEG 350
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 351 QGFMTREFLK 360
>gi|380783781|gb|AFE63766.1| thyroid hormone receptor beta [Macaca mulatta]
gi|380783783|gb|AFE63767.1| thyroid hormone receptor beta [Macaca mulatta]
Length = 461
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 128 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 187
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 188 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 227
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 228 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 278
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 279 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 338
Query: 233 QQLE 236
QL+
Sbjct: 339 GQLK 342
>gi|134270863|gb|ABO69006.1| peroxisome proliferator-activated receptor alpha [Dentex dentex]
Length = 477
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 119/270 (44%), Gaps = 59/270 (21%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R+ C + + NRN+CQYCRF KCL+VGMS +++R+GR+P+
Sbjct: 113 KGFFRRTIRLKLEYDKCERN--CKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPQAE 170
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + +E E AGP+ + D K L + + A+ N
Sbjct: 171 KLKLKAERKVVEK-----------EVAGPMLA-------DHKIL-----VREIHGAYVKN 207
Query: 122 CEYTEEGTRRLVRKPVSLPP----------------------SEVSSPEVASSTAECHES 159
+ R ++ S PP S+ PE E +
Sbjct: 208 FSMNKAKARLILTGKTSKPPFIIHDMETFQLAERTLSAHMVNSDNPEPESGIQAGELVPA 267
Query: 160 QRLWLWQQFAAHV----------TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-L 208
QQ A +V + EFAK VPGF L +DQ+ L+K G +E L
Sbjct: 268 VGCGELQQREAEARVLHCCQSTSVETVTELTEFAKAVPGFQSLDLNDQVTLLKYGVYEAL 327
Query: 209 WIGYVSRLTTDSSLTFSDGMYVTRQQLEVM 238
+ S + D L G ++TR+ L+ +
Sbjct: 328 FTVLASCMNKDGLLVARGGGFITREFLKSL 357
>gi|410971531|ref|XP_003992221.1| PREDICTED: thyroid hormone receptor beta [Felis catus]
Length = 461
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 128 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 187
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 188 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 227
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 228 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 278
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 279 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 338
Query: 233 QQLE 236
QL+
Sbjct: 339 GQLK 342
>gi|383412975|gb|AFH29701.1| peroxisome proliferator-activated receptor delta isoform 2 [Macaca
mulatta]
gi|384939386|gb|AFI33298.1| peroxisome proliferator-activated receptor delta isoform 2 [Macaca
mulatta]
Length = 361
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 118/253 (46%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 152
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + V+ A S Q P +L Y+ L N
Sbjct: 153 KRK--------LVAGLTANEGS--------QYNPQVADLKAFSKHIYNAYL-------KN 189
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 190 FNMTKKKARSILTGKASH-----TAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVH 244
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ ++EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 245 VFYRCQCTTVETVRELIEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 304
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 305 VANGSGFVTREFL 317
>gi|90080433|dbj|BAE89698.1| unnamed protein product [Macaca fascicularis]
Length = 461
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 128 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 187
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 188 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 227
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 228 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 278
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 279 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 338
Query: 233 QQLE 236
QL+
Sbjct: 339 GQLK 342
>gi|296225870|ref|XP_002758685.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
1 [Callithrix jacchus]
Length = 505
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 127/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 278 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 373 QGFMTREFLKSL 384
>gi|332231710|ref|XP_003265037.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
2 [Nomascus leucogenys]
Length = 505
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + G ++ K ++ P + S EVA R++ Q
Sbjct: 278 YDMNSLMM------------GEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 373 QGFMTREFLKSL 384
>gi|74136281|ref|NP_001028032.1| peroxisome proliferator-activated receptor gamma [Macaca mulatta]
gi|13431788|sp|O18924.1|PPARG_MACMU RecName: Full=Peroxisome proliferator-activated receptor gamma;
Short=PPAR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group C member 3
gi|2645731|gb|AAB87480.1| peroxisome proliferator-activated receptor gamma 2 [Macaca mulatta]
gi|355746519|gb|EHH51133.1| hypothetical protein EGM_10463 [Macaca fascicularis]
Length = 505
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + G ++ K ++ P + S EVA R++ Q
Sbjct: 278 YDMNSLMM------------GEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 373 QGFMTREFLKSL 384
>gi|149729684|ref|XP_001494302.1| PREDICTED: thyroid hormone receptor beta isoform 1 [Equus caballus]
gi|338715051|ref|XP_003363198.1| PREDICTED: thyroid hormone receptor beta [Equus caballus]
Length = 461
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 128 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 187
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 188 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 227
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 228 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 278
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 279 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 338
Query: 233 QQLE 236
QL+
Sbjct: 339 GQLK 342
>gi|344288187|ref|XP_003415832.1| PREDICTED: thyroid hormone receptor beta [Loxodonta africana]
Length = 467
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 134 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 193
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 194 KRKLIEENREKRRREELQKSMGQKPE------------PTDEE--------WELIKTVTE 233
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 234 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 284
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 285 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 344
Query: 233 QQLE 236
QL+
Sbjct: 345 GQLK 348
>gi|124054090|gb|ABM89229.1| retinoid X receptor alpha a [Danio rerio]
Length = 340
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 112/233 (48%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + C++ + RNRCQYCR++KCLA+GM R++V+ R +R++
Sbjct: 152 KGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRAK 209
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ERS++E ST SS PV+ + + LAV
Sbjct: 210 ERSENEVEST----------SSANEDMPVEKI-------------LEAELAV-------- 238
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T + V +P + + P T C + + Q F +VE+
Sbjct: 239 ---EPKTETYIETNVPMPSNSPNDP----VTNICQAADK----QLFT---------LVEW 278
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 279 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 331
>gi|110238754|dbj|BAE97647.1| thyroid hormone receptor alpha [Coturnix japonica]
Length = 279
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 122/241 (50%), Gaps = 33/241 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC++VGM+ D V RV
Sbjct: 25 KGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVA 84
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR ++ E E +Q PS + + +++I V++AH
Sbjct: 85 KR------------KLIEENXERRRKEEMIKSLQHRPSPSAEE------WELIHVVTEAH 126
Query: 119 HS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
S N + + +R P ++ +AS + L + +F +TP++
Sbjct: 127 RSTNAQGSHWKQKR------KFLPEDIGQSPMASMPX--GDKVDLEAFSEFTKIITPAIT 178
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQL 235
RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V R+QL
Sbjct: 179 RVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQL 238
Query: 236 E 236
+
Sbjct: 239 K 239
>gi|349096|gb|AAA42095.1| transcription factor, partial [Rattus norvegicus]
Length = 483
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 119/284 (41%), Gaps = 90/284 (31%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMS-------------R 49
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMS R
Sbjct: 55 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 114
Query: 50 DSVRYGRVPKRSRERS----------------------------DSETGSTRVSTTGAEP 81
DS+ Y V K + ++ETG T + +
Sbjct: 115 DSL-YAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNTETGGTYANGHVIDL 173
Query: 82 P-----------------SSLETAG-------------PVQSLPSSTELDTKQL---LTY 108
P S L+ G V +L + + + QL +T
Sbjct: 174 PKSEGYYNIDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVHNLFTYSSFNNGQLAPGITM 233
Query: 109 DVILAVSQ----AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWL 164
I ++Q +H C+YT E +L + + E+ + + S A L
Sbjct: 234 SEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTY--EEIKAYQSKSREA---------L 282
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
WQQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+
Sbjct: 283 WQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEV 326
>gi|281348859|gb|EFB24443.1| hypothetical protein PANDA_002085 [Ailuropoda melanoleuca]
Length = 447
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 144 KGFFKRTIRKDLMYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 201
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE AE SS PV+ + + LAV S
Sbjct: 202 ERAESE----------AECASSGHEDMPVERI-------------LEAELAVEPKTES-- 236
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 237 -YGDMNMENSTNDPV---------------TNICHAADK----QLFT---------LVEW 267
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 268 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 319
>gi|327275473|ref|XP_003222498.1| PREDICTED: thyroid hormone receptor alpha-like [Anolis
carolinensis]
Length = 376
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 117/240 (48%), Gaps = 31/240 (12%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 40 KGFFRRTIQKNLHPTYSCKYDGSCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 99
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR ++ E E +Q P T + +++I ++AH
Sbjct: 100 KR------------KLIEENRERRRKEEMMKSLQHRPEPTAEE------WELIHVATEAH 141
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
S T +K LP SP + + L + +F +TP++ R
Sbjct: 142 RS----TNAQGSHWKQKRKFLPEDIGQSPMASMPDG---DKVDLEAFSEFTKIITPAITR 194
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQLE 236
VV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V R+QL+
Sbjct: 195 VVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQLK 254
>gi|308387337|ref|NP_001184135.1| thyroid hormone receptor alpha [Monodelphis domestica]
gi|295414064|gb|ADG08191.1| thyroid hormone receptor alpha 1 [Monodelphis domestica]
Length = 408
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 118/240 (49%), Gaps = 31/240 (12%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC++VGM+ D V RV
Sbjct: 72 KGFFRRTIQKNLHPTYSCKYDGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVA 131
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR ++ E E +Q P + + +D+I V++AH
Sbjct: 132 KR------------KLIEENRERRRKEEMIRSLQQRPEPSPEE------WDLIHLVTEAH 173
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
S T +K LP SP + + L + +F +TP++ R
Sbjct: 174 RS----TNAQGSHWKQKRKFLPEDIGQSPMASMPDG---DKVDLEAFSEFTKIITPAITR 226
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQLE 236
VV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V R+QL+
Sbjct: 227 VVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQLK 286
>gi|238859643|ref|NP_001155023.1| retinoic acid receptor RXR-alpha-A [Danio rerio]
Length = 458
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 112/233 (48%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + C++ + RNRCQYCR++KCLA+GM R++V+ R +R++
Sbjct: 152 KGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRAK 209
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ERS++E ST SS PV+ + + LAV
Sbjct: 210 ERSENEVEST----------SSANEDMPVEKI-------------LEAELAV-------- 238
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T + V +P + + P T C + + Q F +VE+
Sbjct: 239 ---EPKTETYIETNVPMPSNSPNDP----VTNICQAADK----QLFT---------LVEW 278
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 279 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 331
>gi|431919410|gb|ELK17929.1| Thyroid hormone receptor beta [Pteropus alecto]
Length = 430
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 97 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 156
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 157 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 196
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 197 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 247
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 248 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 307
Query: 233 QQLE 236
QL+
Sbjct: 308 GQLK 311
>gi|417401446|gb|JAA47609.1| Putative retinoic acid receptor rxr-alpha [Desmodus rotundus]
Length = 467
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 115/232 (49%), Gaps = 55/232 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 161 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 218
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R++SE ST+GA S ++ +++L + LAV
Sbjct: 219 DRNESEV----ESTSGA-----------------SEDMPVEKILEAE--LAV-------- 247
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L P+ + P T C + + Q F +VE+
Sbjct: 248 ---EPKTETYVEANMGLNPNSPNDP----VTNICQAADK----QLFT---------LVEW 287
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 288 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHR 339
>gi|297491332|ref|XP_002698801.1| PREDICTED: thyroid hormone receptor beta [Bos taurus]
gi|296472290|tpg|DAA14405.1| TPA: thyroid hormone receptor, beta [Bos taurus]
Length = 520
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 187 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 246
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 247 KRKLIEENREKRRREELQRSMGHKPE------------PTDQE--------WELIKTVTE 286
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 287 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 337
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 338 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 397
Query: 233 QQLE 236
QL+
Sbjct: 398 GQLK 401
>gi|68132036|gb|AAY85284.1| RXRalpha-B [Danio rerio]
Length = 365
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 112/233 (48%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + C++ + RNRCQYCR++KCLA+GM R++V+ R +R++
Sbjct: 59 KGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRAK 116
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ERS++E ST SS PV+ + + LAV
Sbjct: 117 ERSENEVEST----------SSANEDMPVEKI-------------LEAELAV-------- 145
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T + V +P + + P T C + + Q F +VE+
Sbjct: 146 ---EPKTETYIETNVPMPSNSPNDP----VTNICQAADK----QLFT---------LVEW 185
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 186 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 238
>gi|301785325|ref|XP_002928077.1| PREDICTED: thyroid hormone receptor beta-like [Ailuropoda
melanoleuca]
Length = 467
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 134 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 193
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 194 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 233
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 234 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 284
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 285 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 344
Query: 233 QQLE 236
QL+
Sbjct: 345 GQLK 348
>gi|432115887|gb|ELK37032.1| Thyroid hormone receptor beta [Myotis davidii]
Length = 468
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 135 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 194
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 195 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 234
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 235 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 285
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 286 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 345
Query: 233 QQLE 236
QL+
Sbjct: 346 GQLK 349
>gi|395832220|ref|XP_003789172.1| PREDICTED: peroxisome proliferator-activated receptor delta isoform
1 [Otolemur garnettii]
Length = 441
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 116/253 (45%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 152
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + + L + Q P +L Y+ L N
Sbjct: 153 KRKL----------------VAGLTASEGSQHNPQVADLKAFSKHIYNAYL-------KN 189
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 190 FNMTKKKARSILTGKASH-----TAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVH 244
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 245 VFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 304
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 305 VANGSGFVTREFL 317
>gi|464702|sp|Q05343.1|RXRA_RAT RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|206819|gb|AAA42093.1| retinoid X receptor alpha [Rattus norvegicus]
Length = 467
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 161 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 218
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 219 DRNENEVEST----------SSANEDMPVEKI-------------LEAELAV-------- 247
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L PS + P T C + + Q F +VE+
Sbjct: 248 ---EPKTETYVEANMGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 287
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 288 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 340
>gi|74194825|dbj|BAE26004.1| unnamed protein product [Mus musculus]
Length = 467
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 161 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 218
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 219 DRNENEVEST----------SSANEDMPVEKI-------------LEAELAV-------- 247
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L PS + P T C + + Q F +VE+
Sbjct: 248 ---EPKTETYVEANMGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 287
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 288 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 340
>gi|395532498|ref|XP_003768307.1| PREDICTED: thyroid hormone receptor alpha [Sarcophilus harrisii]
gi|295414062|gb|ADG08190.1| thyroid hormone receptor alpha 1 [Potorous tridactylus]
Length = 408
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 118/240 (49%), Gaps = 31/240 (12%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC++VGM+ D V RV
Sbjct: 72 KGFFRRTIQKNLHPTYSCKYDGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVA 131
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR ++ E E +Q P + + +D+I V++AH
Sbjct: 132 KR------------KLIEENRERRRKEEMIRSLQQRPEPSPEE------WDLIHLVTEAH 173
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
S T +K LP SP + + L + +F +TP++ R
Sbjct: 174 RS----TNAQGSHWKQKRKFLPEDIGQSPMASMPDG---DKVDLEAFSEFTKIITPAITR 226
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQLE 236
VV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V R+QL+
Sbjct: 227 VVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQLK 286
>gi|363583682|gb|AEW27308.1| thyroid hormone receptor beta [Columba livia]
Length = 260
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 119/240 (49%), Gaps = 34/240 (14%)
Query: 3 QGFFRRSIQKQIE-YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVPK 59
+GFFRR+ +K Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+ K
Sbjct: 11 KGFFRRTFEKPPPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAK 70
Query: 60 RS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQA 117
R E + T G +P P+ E + +++T + +Q
Sbjct: 71 RKLIEENREKRRREELQKTIGHKPE------------PTDEEWELIKIVTEAHVATNAQG 118
Query: 118 HHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
H + R+ + + + P V++PEV E + QF +TP++
Sbjct: 119 SHW------KQKRKFLPEDIGQAPI-VNAPEVGKVDLE--------AFSQFTKIITPAIT 163
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQL 235
RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR QL
Sbjct: 164 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL 223
>gi|395816618|ref|XP_003781795.1| PREDICTED: thyroid hormone receptor beta [Otolemur garnettii]
Length = 460
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 127 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 186
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 187 KRKLIEENREKRRREELQKSLGHKPE------------PTDEE--------WELIKTVTE 226
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 227 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 277
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 278 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 337
Query: 233 QQLE 236
QL+
Sbjct: 338 GQLK 341
>gi|395832222|ref|XP_003789173.1| PREDICTED: peroxisome proliferator-activated receptor delta isoform
2 [Otolemur garnettii]
Length = 402
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 116/253 (45%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P
Sbjct: 56 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMP--- 110
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
++E T +E Q P +L Y+ L N
Sbjct: 111 ----EAEKRKLVAGLTASEGS---------QHNPQVADLKAFSKHIYNAYL-------KN 150
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 151 FNMTKKKARSILTGKASH-----TAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVH 205
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 206 VFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 265
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 266 VANGSGFVTREFL 278
>gi|354501950|ref|XP_003513051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cricetulus
griseus]
gi|344245296|gb|EGW01400.1| Retinoic acid receptor RXR-alpha [Cricetulus griseus]
Length = 439
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 133 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 190
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 191 DRNENEVEST----------SSANEDMPVEKI-------------LEAELAV-------- 219
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L PS + P T C + + Q F +VE+
Sbjct: 220 ---EPKTETYVEANMGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 259
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 260 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 312
>gi|31207|emb|CAA28412.1| put.thyroid hormone receptor [Homo sapiens]
gi|180253|gb|AAA35677.1| c-erbA [Homo sapiens]
gi|225391|prf||1301322A thyroid hormone receptor
Length = 456
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 118/242 (48%), Gaps = 35/242 (14%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 123 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 182
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 183 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 222
Query: 117 AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
AH + T +KP LP +P V + L + F +TP++
Sbjct: 223 AHVA----TNAQGSHWKQKPKFLPEDIGQAPIVNAPEG---GKVDLEAFSHFTKIITPAI 275
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQ 234
RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M V R Q
Sbjct: 276 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVIRGQ 335
Query: 235 LE 236
L+
Sbjct: 336 LK 337
>gi|6755384|ref|NP_035435.1| retinoic acid receptor RXR-alpha [Mus musculus]
gi|133702|sp|P28700.1|RXRA_MOUSE RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|54022|emb|CAA46962.1| retinoid X receptor-alpha [Mus musculus]
gi|200878|gb|AAA40080.1| retinoid X receptor alpha [Mus musculus]
gi|187953011|gb|AAI38803.1| Retinoid X receptor alpha [Mus musculus]
gi|187954071|gb|AAI38801.1| Retinoid X receptor alpha [Mus musculus]
Length = 467
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 161 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 218
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 219 DRNENEVEST----------SSANEDMPVEKI-------------LEAELAV-------- 247
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L PS + P T C + + Q F +VE+
Sbjct: 248 ---EPKTETYVEANMGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 287
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 288 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 340
>gi|149039210|gb|EDL93430.1| retinoid X receptor alpha, isoform CRA_b [Rattus norvegicus]
Length = 439
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 133 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 190
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 191 DRNENEVEST----------SSANEDMPVEKI-------------LEAELAV-------- 219
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L PS + P T C + + Q F +VE+
Sbjct: 220 ---EPKTETYVEANMGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 259
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 260 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 312
>gi|5902068|ref|NP_008848.1| retinoic acid receptor RXR-gamma isoform a [Homo sapiens]
gi|114561087|ref|XP_513962.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 2 [Pan
troglodytes]
gi|397508368|ref|XP_003824630.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan paniscus]
gi|1350913|sp|P48443.1|RXRG_HUMAN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|1053069|gb|AAA80681.1| retinoid X receptor-gamma [Homo sapiens]
gi|15082315|gb|AAH12063.1| Retinoid X receptor, gamma [Homo sapiens]
gi|48145527|emb|CAG32986.1| RXRG [Homo sapiens]
gi|119611151|gb|EAW90745.1| retinoid X receptor, gamma [Homo sapiens]
gi|190689913|gb|ACE86731.1| retinoid X receptor, gamma protein [synthetic construct]
gi|190691285|gb|ACE87417.1| retinoid X receptor, gamma protein [synthetic construct]
gi|261858858|dbj|BAI45951.1| retinoid X receptor, gamma [synthetic construct]
gi|325495501|gb|ADZ17356.1| retinoid X nuclear receptor gamma variant 1 [Homo sapiens]
gi|326205168|dbj|BAJ83970.1| retinoic acid receptor RXR-gamma [Homo sapiens]
Length = 463
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 160 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 217
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE +T+G E ++ +++L + LAV S
Sbjct: 218 ERAESE---AECATSGHE------------------DMPVERILEAE--LAVEPKTES-- 252
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 253 -YGDMNMENSTNDPV---------------TNICHAADK----QLFT---------LVEW 283
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 284 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>gi|112806968|dbj|BAF03080.1| thyroid hormone receptor alpha [Eublepharis macularius]
Length = 408
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 117/240 (48%), Gaps = 31/240 (12%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 72 KGFFRRTIQKNLHPTYSCKYDGSCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 131
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR ++ E E +Q P T + +++I ++AH
Sbjct: 132 KR------------KLIEENRERRRKEEMLKSLQHRPEPTAEE------WELIHIATEAH 173
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
S T +K LP SP + + L + +F +TP++ R
Sbjct: 174 RS----TNAQGSHWKQKRKFLPEDIGQSPMASMPDG---DKVDLEAFSEFTKIITPAITR 226
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQLE 236
VV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V R+QL+
Sbjct: 227 VVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQLK 286
>gi|148747360|ref|NP_036937.2| retinoic acid receptor RXR-alpha [Rattus norvegicus]
gi|110781215|emb|CAL25727.1| retinoid X receptor alpha [Rattus norvegicus]
gi|110781217|emb|CAL25728.1| retinoid X receptor alpha [Rattus norvegicus]
gi|112982471|emb|CAL36079.1| retinoid X receptor alpha [Rattus norvegicus]
gi|149039209|gb|EDL93429.1| retinoid X receptor alpha, isoform CRA_a [Rattus norvegicus]
Length = 467
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 161 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 218
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 219 DRNENEVEST----------SSANEDMPVEKI-------------LEAELAV-------- 247
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L PS + P T C + + Q F +VE+
Sbjct: 248 ---EPKTETYVEANMGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 287
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 288 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 340
>gi|15723732|gb|AAL05262.1| peroxisome proliferator-activated receptor gamma 2 [Macaca
fascicularis]
Length = 505
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + G ++ K ++ P + S EVA R++ Q
Sbjct: 278 YDMNSLMM------------GEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVFISEG 372
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 373 QGFMTREFLKSL 384
>gi|1685271|gb|AAB36777.1| RXR alpha 2 [Mus musculus]
gi|1685273|gb|AAB36778.1| RXR alpha 3 [Mus musculus]
Length = 439
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 133 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 190
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 191 DRNENEVEST----------SSANEDMPVEKI-------------LEAELAV-------- 219
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L PS + P T C + + Q F +VE+
Sbjct: 220 ---EPKTETYVEANMGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 259
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 260 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 312
>gi|84579013|dbj|BAE72940.1| hypothetical protein [Macaca fascicularis]
Length = 361
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 118/253 (46%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRVKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 152
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + V+ A S Q P +L Y+ L N
Sbjct: 153 KRK--------LVAGLTANEGS--------QYNPQVADLKAFSKHIYNAYL-------KN 189
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 190 FNMTKKKARSILTGKASH-----TAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVH 244
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ ++EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 245 VFYRCQCTTVETVRELIEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 304
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 305 VANGSGFVTREFL 317
>gi|155968659|dbj|BAF75791.1| thyroid hormone receptor [Leucopsarion petersii]
Length = 413
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 124/241 (51%), Gaps = 33/241 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +G C++ ++ RN+CQ CRFKKC++VGM+ D V RV
Sbjct: 77 KGFFRRTIQKNLHPSYSCKYEGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVA 136
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR R+ E ET +Q P E DT + +++I V++AH
Sbjct: 137 KR------------RLIEQNREKRKKEETVRMMQLRP---EPDTSE---WELIRMVTEAH 178
Query: 119 -HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
++N + + +R +P V +S + L + +F +TP++
Sbjct: 179 KNTNAQGSSWKQKRKF-----MPDGIGQGSMVPTSDG---DKVDLEAFSEFTKIMTPAIT 230
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQL 235
RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V R+QL
Sbjct: 231 RVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQL 290
Query: 236 E 236
+
Sbjct: 291 K 291
>gi|124028632|sp|P45446.3|RORB_RAT RecName: Full=Nuclear receptor ROR-beta; AltName: Full=Nuclear
receptor RZR-beta; AltName: Full=Nuclear receptor
subfamily 1 group F member 2; AltName:
Full=Retinoid-related orphan receptor-beta
Length = 470
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 119/284 (41%), Gaps = 90/284 (31%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMS-------------R 49
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMS R
Sbjct: 42 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 101
Query: 50 DSVRYGRVPKRSRERS----------------------------DSETGSTRVSTTGAEP 81
DS+ Y V K + ++ETG T + +
Sbjct: 102 DSL-YAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNTETGGTYANGHVIDL 160
Query: 82 P-----------------SSLETAG-------PVQSLPSSTEL------DTKQL---LTY 108
P S L+ G P+ L S L + QL +T
Sbjct: 161 PKSEGYYNIDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVHNLFTYSSFNNGQLAPGITM 220
Query: 109 DVILAVSQ----AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWL 164
I ++Q +H C+YT E +L + + E+ + + S A L
Sbjct: 221 SEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTY--EEIKAYQSKSREA---------L 269
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
WQQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+
Sbjct: 270 WQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEV 313
>gi|110351006|gb|ABG73395.1| peroxisome proliferator-activated receptor alpha-like protein
[Pimephales promelas]
Length = 240
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 115/250 (46%), Gaps = 44/250 (17%)
Query: 6 FRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRER 64
FRR+I+ ++EY +C R +C + + NRN+CQYCRF+KCL+VGMS +++R+GR+P+ + R
Sbjct: 1 FRRTIRLKLEYDKCER--RCKIQKRNRNKCQYCRFQKCLSVGMSHNAIRFGRMPQSEKLR 58
Query: 65 SDSE--TGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+E TG V D +Q + + +A+ N
Sbjct: 59 LKAEILTGEREVE-------------------------DPQQADQNPLAKQIYEAYMKNF 93
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPE-------------VASSTAECHESQRLWLWQQFA 169
+ R ++ S PP + E V SS ++ + ++
Sbjct: 94 NMNKCKARTILTGKTSTPPFVIHDMETLQLAEQTFVAKMVGSSGGLLNKDAEVRIFHCCQ 153
Query: 170 AHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSDGM 228
+V + EFAK VPGF DL +DQ+ L+K G E L+ S + D L
Sbjct: 154 CTSVETVTELTEFAKSVPGFSDLDLNDQVTLLKYGVHEALFAMLASCMNKDGLLVAYGSG 213
Query: 229 YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 214 FITREFLKSL 223
>gi|426332559|ref|XP_004027871.1| PREDICTED: retinoic acid receptor RXR-gamma [Gorilla gorilla
gorilla]
Length = 463
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 160 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 217
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE +T+G E ++ +++L + LAV S
Sbjct: 218 ERAESE---AECATSGHE------------------DMPVERILEAE--LAVEPKTES-- 252
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 253 -YGDMNMENSTNDPV---------------TNICHAADK----QLFT---------LVEW 283
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 284 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>gi|139948625|ref|NP_001077105.1| peroxisome proliferator-activated receptor delta [Bos taurus]
gi|134024721|gb|AAI34637.1| PPARD protein [Bos taurus]
gi|296474501|tpg|DAA16616.1| TPA: peroxisome proliferator-activated receptor delta [Bos taurus]
Length = 441
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 117/253 (46%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRMKLEYEKCER--ICKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 152
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + V+ A S Q P +L Y L N
Sbjct: 153 KRK--------LVAGLTANEGS--------QHNPQVADLRAFSKHIYSAYL-------KN 189
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 190 FNMTKKKARGILTGKAS-----HTAPFVIHDIETLWQAEKGLVWKQLVNSLPPYKEISVH 244
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F DL +DQ+ L+K G E ++ + L
Sbjct: 245 VFYRCQCTTVETVRELTEFAKSIPSFGDLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 304
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 305 VANGTGFVTREFL 317
>gi|59709816|gb|AAW88538.1| E78 [Schistosoma mansoni]
Length = 66
Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 41/45 (91%), Positives = 44/45 (97%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGM 47
+GFFRRSIQKQIEY+CLRDGKCLVIRLNRNRCQYCRF+KCLA GM
Sbjct: 22 KGFFRRSIQKQIEYKCLRDGKCLVIRLNRNRCQYCRFRKCLAAGM 66
>gi|45382081|ref|NP_990778.1| thyroid hormone receptor beta isoform 1 [Gallus gallus]
gi|212802|gb|AAA49107.1| beta-thyroid hormone receptor [Gallus gallus]
Length = 369
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 125/243 (51%), Gaps = 37/243 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 36 KGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLA 95
Query: 59 KRSR-ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQA 117
KR E + + + T P P+ E +++I V++A
Sbjct: 96 KRKLIEENREKRRREELQKTMVHKPE-----------PTDEE--------WELIKIVTEA 136
Query: 118 H-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPS 175
H +N + + + R+ + + + P V++PE E + QF +TP+
Sbjct: 137 HVATNAQVSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSQFTKIITPA 187
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQ 233
+ RVV+FAK++P F +L +DQ+IL+K+ E+ + R +S +LT + M VTR
Sbjct: 188 ITRVVDFAKKLPMFLELPCEDQIILLKVCCMEIMSLRAAVRYDPESETLTLNGEMAVTRG 247
Query: 234 QLE 236
QL+
Sbjct: 248 QLK 250
>gi|325930183|gb|ADZ45550.1| retinoid X receptor alpha [Taeniopygia guttata]
Length = 467
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 161 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 218
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 219 DRNENEVEST----------SSANEDMPVEKI-------------LEAELAV-------- 247
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T + + L PS + P T C + + Q F +VE+
Sbjct: 248 ---EPKTEAYIEANMGLTPSSPNDP----VTNICQAADK----QLFT---------LVEW 287
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 288 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 340
>gi|88697722|gb|ABD48806.1| thyroid hormone receptor alpha variant a [Alligator
mississippiensis]
gi|88697724|gb|ABD48807.1| thyroid hormone receptor alpha variant b [Alligator
mississippiensis]
Length = 372
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 118/242 (48%), Gaps = 35/242 (14%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC++VGM+ D V RV
Sbjct: 36 KGFFRRTIQKNLHPTYSCKYDGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVA 95
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + + P PS+ E +++I V++
Sbjct: 96 KRKLIEENRERRRKEEMIKSLQHRPE------------PSAEE--------WELIHVVTE 135
Query: 117 AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
AH S T +K LP SP + + L + +F +TP++
Sbjct: 136 AHRS----TNAQGSHWKQKRKFLPEDIGQSPMASMPDG---DKVDLEAFSEFTKIITPAI 188
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQ 234
RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V R+Q
Sbjct: 189 TRVVDFAKKLPMFAELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQ 248
Query: 235 LE 236
L+
Sbjct: 249 LK 250
>gi|8132822|gb|AAF73406.1|AF229357_1 peroxisome proliferator activated receptor beta [Bos taurus]
Length = 436
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 117/253 (46%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRMKLEYEKCER--ICKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 152
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + V+ A S Q P +L Y L N
Sbjct: 153 KRK--------LVAGLTANEGS--------QHNPQVADLRAFSKHIYSAYL-------KN 189
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 190 FNMTKKKARGILTGKAS-----HTAPFVIHDIETLWQAEKGLVWKQLVNSLPPYKEISVH 244
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F DL +DQ+ L+K G E ++ + L
Sbjct: 245 VFYRCQCTTVETVRELTEFAKSIPSFGDLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 304
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 305 VANGTGFVTREFL 317
>gi|216409720|dbj|BAH02297.1| retinoid X receptor-gamma [Homo sapiens]
Length = 463
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 160 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 217
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE +T+G E ++ +++L + LAV S
Sbjct: 218 ERAESE---AECATSGHE------------------DMPVERILEAE--LAVEPKTES-- 252
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 253 -YGDMNMENSTNDPV---------------TNICHAADK----QLFT---------LVEW 283
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 284 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>gi|363740474|ref|XP_003642339.1| PREDICTED: retinoic acid receptor RXR-alpha [Gallus gallus]
Length = 467
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 161 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 218
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 219 DRNENEVEST----------SSANEDMPVEKI-------------LEAELAV-------- 247
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T + + L PS + P T C + + Q F +VE+
Sbjct: 248 ---EPKTETYIEANMGLTPSSPNDP----VTNICQAADK----QLFT---------LVEW 287
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 288 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 340
>gi|33318315|gb|AAQ05028.1| RXR gamma [Scophthalmus maximus]
Length = 198
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 108/232 (46%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C +CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 4 KGFFKRTVRKDLTYTCRDSKECLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 61
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER +SE ST SS PV D IL A
Sbjct: 62 ERGESEVEST----------SSFNEDMPV-----------------DKILDAEVAVEPKT 94
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E +G+ P + + P T C + + Q F +VE+
Sbjct: 95 ETYSDGS----------PGNSTNDP----VTNICQAADK----QLFT---------LVEW 127
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL DDQ+IL++ G+ EL I S +T + + G++V R
Sbjct: 128 AKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHR 179
>gi|119584754|gb|EAW64350.1| thyroid hormone receptor, beta (erythroblastic leukemia viral
(v-erb-a) oncogene homolog 2, avian), isoform CRA_b
[Homo sapiens]
gi|355560070|gb|EHH16798.1| hypothetical protein EGK_12146 [Macaca mulatta]
gi|355747101|gb|EHH51715.1| hypothetical protein EGM_11147 [Macaca fascicularis]
Length = 476
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 143 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 202
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 203 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 242
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 243 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 293
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 294 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 353
Query: 233 QQLE 236
QL+
Sbjct: 354 GQLK 357
>gi|410986573|ref|XP_003999584.1| PREDICTED: retinoic acid receptor RXR-gamma [Felis catus]
Length = 463
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 160 KGFFKRTIRKDLMYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 217
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE AE SS PV+ + + LAV S
Sbjct: 218 ERAESE----------AECASSGHEDMPVERI-------------LEAELAVEPKTES-- 252
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 253 -YGDMNMENSTNDPV---------------TNICHAADK----QLFT---------LVEW 283
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 284 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>gi|356892262|gb|AET41699.1| peroxisome proliferator-activated receptor gamma [Bubalus bubalis]
Length = 449
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 126/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 104 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 161
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 162 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 221
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K +S P + S EVA R++ Q
Sbjct: 222 YDM------------NSLMMGEDKIKFKHIS--PMQEPSKEVAI---------RIFQGCQ 258
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G + ++ L + S+G
Sbjct: 259 FRS--VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHGIIYTMLASLMNKDGVLISEG 316
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 317 QGFMTREFLKSL 328
>gi|351705194|gb|EHB08113.1| Thyroid hormone receptor beta [Heterocephalus glaber]
Length = 476
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 143 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 202
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 203 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 242
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 243 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 293
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 294 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 353
Query: 233 QQLE 236
QL+
Sbjct: 354 GQLK 357
>gi|281341171|gb|EFB16755.1| hypothetical protein PANDA_017978 [Ailuropoda melanoleuca]
Length = 476
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 143 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 202
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 203 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 242
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 243 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 293
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 294 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 353
Query: 233 QQLE 236
QL+
Sbjct: 354 GQLK 357
>gi|84579197|dbj|BAE73032.1| hypothetical protein [Macaca fascicularis]
Length = 462
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 156 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 213
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E S T+G + +P L+ + LAV
Sbjct: 214 DRNENEVES---------------TSGANEDMPVERILEAE--------LAV-------- 242
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L PS + P ++ + + Q L VE+
Sbjct: 243 ---EPKTETYVEANMGLNPSSPNDP--VTNICQAADKQLFML---------------VEW 282
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 283 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 335
>gi|54026|emb|CAA46964.1| retinoid X receptor-gamma [Mus musculus]
Length = 463
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 160 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 217
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE AE SS PV+ + + LAV S
Sbjct: 218 ERAESE----------AECASSSHEDMPVERI-------------LEAELAVEPKTES-- 252
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 253 -YGDMNVENSTNDPV---------------TNICHAADK----QLFT---------LVEW 283
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 284 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>gi|340025441|gb|AEK27051.1| retinoid X receptor gamma [Lateolabrax japonicus]
Length = 453
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 109/232 (46%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C +C++ + RNRCQYCR++KCLA+GM R++V+ R +R R
Sbjct: 150 KGFFKRTVRKDLSYTCRDSKECVIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGR 207
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER +SE ST SS PV D IL A
Sbjct: 208 ERGESEVEST----------SSFNEEMPV-----------------DKILDAELAVEPKT 240
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E +G+ PS ++ V T C + + Q F +VE+
Sbjct: 241 ETYSDGS-----------PSNSTNDPV---TNICQAADK----QLFT---------LVEW 273
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F +L DDQ+IL++ G+ EL I S +T + + G++V R
Sbjct: 274 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHR 325
>gi|334321961|ref|XP_001370409.2| PREDICTED: retinoic acid receptor RXR-gamma-like [Monodelphis
domestica]
Length = 473
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 114/232 (49%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 170 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 227
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER+++E ST ++G E ++ +++L + LAV S
Sbjct: 228 ERAENEVEST---SSGHE------------------DMPVERILEAE--LAVEPKTES-- 262
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 263 -YGDTNMENSTNDPV---------------TNICHAADK----QLFT---------LVEW 293
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 294 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 345
>gi|83638436|gb|ABC33911.1| retinoid X receptor alpha transcript variant 1 [Sus scrofa]
Length = 374
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 109/233 (46%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+ +K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 68 KGFFKRTARKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 125
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R ++E ST SS PV+ + + LAV
Sbjct: 126 DRGENEVEST----------SSANEDMPVEKI-------------LEAELAV-------- 154
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V V L PS + P T C + + Q F +VE+
Sbjct: 155 ---EPKTETYVEANVGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 194
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKRVP F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 195 AKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 247
>gi|46048693|ref|NP_990644.1| thyroid hormone receptor alpha [Gallus gallus]
gi|135710|sp|P04625.1|THA_CHICK RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear
receptor subfamily 1 group A member 1
gi|63178|emb|CAA68792.1| unnamed protein product [Gallus gallus]
gi|225390|prf||1301321A protein c-erbA
Length = 408
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 119/240 (49%), Gaps = 31/240 (12%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC++VGM+ D V RV
Sbjct: 72 KGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVA 131
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR ++ E E +Q PS + + +++I V++AH
Sbjct: 132 KR------------KLIEENRERRRKEEMIKSLQHRPSPSAEE------WELIHVVTEAH 173
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
S T +K LP SP + + L + +F +TP++ R
Sbjct: 174 RS----TNAQGSHWKQKRKFLPEDIGQSPMASMPDG---DKVDLEAFSEFTKIITPAITR 226
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQLE 236
VV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V R+QL+
Sbjct: 227 VVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQLK 286
>gi|293344662|ref|XP_002725756.1| PREDICTED: nuclear receptor ROR-beta isoform 2 [Rattus norvegicus]
gi|293356460|ref|XP_002728915.1| PREDICTED: nuclear receptor ROR-beta isoform 1 [Rattus norvegicus]
Length = 470
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 119/284 (41%), Gaps = 90/284 (31%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMS-------------R 49
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMS R
Sbjct: 42 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 101
Query: 50 DSVRYGRVPKRSRERS----------------------------DSETGSTRVSTTGAEP 81
DS+ Y V K + ++ETG T + +
Sbjct: 102 DSL-YAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNTETGGTYANGHVIDL 160
Query: 82 P-----------------SSLETAG-------PVQSLPSSTEL------DTKQL---LTY 108
P S L+ G P+ L S L + QL +T
Sbjct: 161 PKSEGYYNIDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITM 220
Query: 109 DVILAVSQ----AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWL 164
I ++Q +H C+YT E +L + + E+ + + S A L
Sbjct: 221 SEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTY--EEIKAYQSKSREA---------L 269
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
WQQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+
Sbjct: 270 WQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEV 313
>gi|148676425|gb|EDL08372.1| retinoid X receptor alpha [Mus musculus]
Length = 457
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 151 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 208
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 209 DRNENEVEST----------SSANEDMPVEKI-------------LEAELAV-------- 237
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L PS + P T C + + Q F +VE+
Sbjct: 238 ---EPKTETYVEANMGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 277
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 278 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 330
>gi|4003528|gb|AAC95154.1| retinoic acid receptor RXR [Cloning vector pERV3]
Length = 479
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 173 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 230
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 231 DRNENEVEST----------SSANEDMPVERI-------------LEAELAV-------- 259
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L PS + P T C + + Q F +VE+
Sbjct: 260 ---EPKTETYVEANMGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 299
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 300 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 352
>gi|6677829|ref|NP_033133.1| retinoic acid receptor RXR-gamma isoform 1 [Mus musculus]
gi|1350914|sp|P28705.2|RXRG_MOUSE RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|200882|gb|AAA40082.1| retinoid X receptor-gamma [Mus musculus]
gi|386367|gb|AAB27244.1| retinoid-X receptor-gamma isoform 1 [Mus sp.]
gi|34849539|gb|AAH58401.1| Retinoid X receptor gamma [Mus musculus]
gi|148707231|gb|EDL39178.1| retinoid X receptor gamma [Mus musculus]
Length = 463
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 160 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 217
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE AE SS PV+ + + LAV S
Sbjct: 218 ERAESE----------AECASSSHEDMPVERI-------------LEAELAVEPKTES-- 252
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 253 -YGDMNVENSTNDPV---------------TNICHAADK----QLFT---------LVEW 283
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 284 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>gi|296197977|ref|XP_002746507.1| PREDICTED: peroxisome proliferator-activated receptor delta isoform
1 [Callithrix jacchus]
Length = 441
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 115/253 (45%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 152
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R G + V L + ++ + A+ N
Sbjct: 153 K----------RKLVAGLTANEGRQYNSQVADLKAFSQ-------------HIYNAYLKN 189
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S P P V ++++ +W+Q + P
Sbjct: 190 FNMTKKKARSILTGKASHTP-----PFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVH 244
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 245 VFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 304
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 305 VANGSGFVTREFL 317
>gi|148709623|gb|EDL41569.1| RAR-related orphan receptor beta, isoform CRA_a [Mus musculus]
Length = 474
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 119/284 (41%), Gaps = 90/284 (31%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMS-------------R 49
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMS R
Sbjct: 46 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 105
Query: 50 DSVRYGRVPKRSRERS----------------------------DSETGSTRVSTTGAEP 81
DS+ Y V K + ++ETG T + +
Sbjct: 106 DSL-YAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNTETGGTYANGHVIDL 164
Query: 82 P-----------------SSLETAG-------PVQSLPSSTEL------DTKQL---LTY 108
P S L+ G P+ L S L + QL +T
Sbjct: 165 PKSEGYYSIDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITM 224
Query: 109 DVILAVSQ----AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWL 164
I ++Q +H C+YT E +L + + E+ + + S A L
Sbjct: 225 SEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTY--EEIKAYQSKSREA---------L 273
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
WQQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+
Sbjct: 274 WQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEV 317
>gi|39645799|gb|AAH63827.1| RXRA protein [Homo sapiens]
Length = 516
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 210 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 267
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 268 DRNENEVEST----------SSANEDMPVERI-------------LEAELAV-------- 296
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L PS + P T C + + Q F +VE+
Sbjct: 297 ---EPKTETYVEANMGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 336
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 337 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 389
>gi|301756739|ref|XP_002914218.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Ailuropoda
melanoleuca]
Length = 463
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 160 KGFFKRTIRKDLMYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 217
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE AE SS PV+ + + LAV S
Sbjct: 218 ERAESE----------AECASSGHEDMPVERI-------------LEAELAVEPKTES-- 252
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 253 -YGDMNMENSTNDPV---------------TNICHAADK----QLFT---------LVEW 283
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 284 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>gi|13431914|sp|Q90382.1|THA_CAIMO RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear
receptor subfamily 1 group A member 1
gi|1107558|emb|CAA90411.1| alpha-thyroid hormone receptor [Cairina moschata]
Length = 401
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 119/240 (49%), Gaps = 31/240 (12%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC++VGM+ D V RV
Sbjct: 71 KGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVA 130
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR ++ E E +Q PS + + +++I V++AH
Sbjct: 131 KR------------KLIEENRERRRKEEMIKSLQHRPSPSAEE------WELIHVVTEAH 172
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
S T +K LP SP + + L + +F +TP++ R
Sbjct: 173 RS----TNAQGSHWKQKRKFLPEDIGQSPMASMPDG---DKVDLEAFSEFTKIITPAITR 225
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQLE 236
VV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V R+QL+
Sbjct: 226 VVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQLK 285
>gi|449269065|gb|EMC79874.1| Retinoic acid receptor RXR-alpha, partial [Columba livia]
Length = 458
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 152 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 209
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 210 DRNENEVEST----------SSANEDMPVEKI-------------LEAELAV-------- 238
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T + + L PS + P T C + + Q F +VE+
Sbjct: 239 ---EPKTETYIEANMGLTPSSPNDP----VTNICQAADK----QLFT---------LVEW 278
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 279 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 331
>gi|432110903|gb|ELK34377.1| Peroxisome proliferator-activated receptor gamma [Myotis davidii]
Length = 466
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 43/252 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 218 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 277
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ + G ++ K ++ P + S EVA R++ Q
Sbjct: 278 YDMNSLMM------------GEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 314
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 315 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 372
Query: 228 M-YVTRQQLEVM 238
++TR+ L+ +
Sbjct: 373 QGFMTREFLKSL 384
>gi|449267018|gb|EMC77994.1| Peroxisome proliferator-activated receptor delta [Columba livia]
Length = 443
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 49/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ +++Y +C R C + + NRN+CQYCRF+KCL++GMS +++R+GR+P+
Sbjct: 96 KGFFRRTIRMKLKYEKCERT--CKIQKKNRNKCQYCRFQKCLSLGMSHNAIRFGRMPEAE 153
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + + + +S P +L Y+ A+ N
Sbjct: 154 KRKLVAGLTANEISCQN----------------PQVADLKAFSKHIYN-------AYLKN 190
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S P P V ++++ +W+Q + P
Sbjct: 191 FNMTKKKARGILTGKASSTP----QPFVIHDMDTLWQAEKGLVWKQLVNGIPPYKEIGVH 246
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 247 VFYRCQCTTVETVRELTEFAKSIPSFVGLYLNDQVTLLKYGVHEAIFAMLASIMNKDGLL 306
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 307 VANGNGFVTREFL 319
>gi|14627168|gb|AAG60685.2| peroxisome proliferator activated receptor-gamma [Cavia porcellus]
Length = 475
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 122/251 (48%), Gaps = 45/251 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIGLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGP-----VQSLP----------SSTELDTKQLL 106
+E+ +E S+ + E A ++S P + D +
Sbjct: 188 KEKLLAEI-SSDIDQLNPESADLRALAKHLYDSYIKSFPLIKAKARAILTGRTTDKSPFV 246
Query: 107 TYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQ 166
YD+ G ++ K ++ P + S EVA R++
Sbjct: 247 IYDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGC 283
Query: 167 QFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSD 226
QF + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+
Sbjct: 284 QFRS--VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 341
Query: 227 GM-YVTRQQLE 236
G ++TR+ L+
Sbjct: 342 GQGFMTREFLK 352
>gi|210060988|pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
gi|210060994|pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
gi|210061000|pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 161 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 218
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 219 DRNENEVEST----------SSANEDMPVERI-------------LEAELAV-------- 247
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L PS + P T C + + Q F +VE+
Sbjct: 248 ---EPKTETYVEANMGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 287
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 288 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 340
>gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Cloning vector pFB-ERV]
Length = 472
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 166 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 223
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 224 DRNENEVEST----------SSANEDMPVERI-------------LEAELAV-------- 252
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L PS + P T C + + Q F +VE+
Sbjct: 253 ---EPKTETYVEANMGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 292
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 293 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 345
>gi|409194686|gb|AFV31633.1| retinoic X receptor gamma, partial [Acanthopagrus schlegelii]
Length = 453
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 109/232 (46%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C +CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 150 KGFFKRTVRKDLTYTCRDSKECLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 207
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER +SE ST SS PV D IL A
Sbjct: 208 ERGESEVEST----------SSFNEEMPV-----------------DKILDAELAVEPKT 240
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E +G+ PS ++ V T C + + Q F +VE+
Sbjct: 241 ETYSDGS-----------PSNSTNDPV---TNICQAADK----QLFT---------LVEW 273
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F +L DDQ+IL++ G+ EL I S +T + + G++V R
Sbjct: 274 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHR 325
>gi|344237344|gb|EGV93447.1| Thyroid hormone receptor beta [Cricetulus griseus]
Length = 377
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 44 KGFFRRTIQKSLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 103
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 104 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 143
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 144 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 194
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 195 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 254
Query: 233 QQLE 236
QL+
Sbjct: 255 GQLK 258
>gi|444511394|gb|ELV09859.1| Thyroid hormone receptor beta [Tupaia chinensis]
Length = 456
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 123 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 182
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 183 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 222
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 223 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 273
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 274 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 333
Query: 233 QQLE 236
QL+
Sbjct: 334 GQLK 337
>gi|440891153|gb|ELR45048.1| Peroxisome proliferator-activated receptor delta, partial [Bos
grunniens mutus]
Length = 398
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 117/253 (46%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 52 KGFFRRTIRMKLEYEKCER--ICKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 109
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + V+ A S Q P +L Y L N
Sbjct: 110 KRK--------LVAGLTANEGS--------QHNPQVADLRAFSKHIYSAYL-------KN 146
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 147 FNMTKKKARGILTGKAS-----HTAPFVIHDIETLWQAEKGLVWKQLVNSLPPYKEISVH 201
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F DL +DQ+ L+K G E ++ + L
Sbjct: 202 VFYRCQCTTVETVRELTEFAKSIPSFGDLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 261
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 262 VANGTGFVTREFL 274
>gi|149755798|ref|XP_001492700.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Equus caballus]
Length = 539
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 160 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 217
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE AE SS PV+ + + LAV S
Sbjct: 218 ERAESE----------AECASSGHEDMPVERI-------------LEAELAVEPKTES-- 252
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 253 -YGDMNMENSTNDPV---------------TNICHAADK----QLFT---------LVEW 283
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 284 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>gi|112821692|ref|NP_666207.3| nuclear receptor ROR-beta isoform 2 [Mus musculus]
gi|124028631|sp|Q8R1B8.3|RORB_MOUSE RecName: Full=Nuclear receptor ROR-beta; AltName: Full=Nuclear
receptor RZR-beta; AltName: Full=Nuclear receptor
subfamily 1 group F member 2; AltName:
Full=Retinoid-related orphan receptor-beta
gi|110589525|gb|ABG77270.1| retinoid-related orphan receptor beta 2 isoform [Mus musculus]
Length = 470
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 119/284 (41%), Gaps = 90/284 (31%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMS-------------R 49
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMS R
Sbjct: 42 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 101
Query: 50 DSVRYGRVPKRSRERS----------------------------DSETGSTRVSTTGAEP 81
DS+ Y V K + ++ETG T + +
Sbjct: 102 DSL-YAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNTETGGTYANGHVIDL 160
Query: 82 P-----------------SSLETAG-------PVQSLPSSTEL------DTKQL---LTY 108
P S L+ G P+ L S L + QL +T
Sbjct: 161 PKSEGYYSIDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITM 220
Query: 109 DVILAVSQ----AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWL 164
I ++Q +H C+YT E +L + + E+ + + S A L
Sbjct: 221 SEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTY--EEIKAYQSKSREA---------L 269
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
WQQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+
Sbjct: 270 WQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEV 313
>gi|344286664|ref|XP_003415077.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Loxodonta
africana]
Length = 489
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 110/232 (47%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 186 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 243
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE AE S+ PV+ + + LAV S
Sbjct: 244 ERAESE----------AESASNGHEDMPVERI-------------LEAELAVEPKTES-- 278
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 279 -YGDMNMENSTNDPV---------------TNICHAADK----QLFT---------LVEW 309
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 310 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 361
>gi|50882276|gb|AAT85613.1| peroxisome proliferator-activated receptor alpha [Sparus aurata]
Length = 477
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 116/247 (46%), Gaps = 13/247 (5%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R+ C + + NRN+CQYCRF KCL+VGMS +++R+GR+P+
Sbjct: 113 KGFFRRTIRLRLEYDKCERN--CKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPQAE 170
Query: 62 RERSDSETGSTRVSTTGAEPPSSL----ETAGPVQSLPSSTELDTKQLLTYDVILAVSQA 117
+ + +E G E G S + + +LT
Sbjct: 171 KLKLKAERKVVEKEVAGPMLADHKILVREIHGAYMKNFSMNKAKARLILTGKTSKQPFII 230
Query: 118 HHSNCEYTEEGT--RRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPS 175
H E T +V P S + + E+ + QR + F + S
Sbjct: 231 HDMETFQLAEKTLAAHMVNGDNQEPESGLQAGELVPAVGCGELQQREAEARLFHCCQSTS 290
Query: 176 VQRV---VEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSDGMYVT 231
V+ V EFAK VPGF L +DQ+ L+K G +E L+ S + D L G ++T
Sbjct: 291 VETVTELTEFAKAVPGFQSLDLNDQVTLLKYGVYEALFTLLASCMNKDGLLVARGGGFIT 350
Query: 232 RQQLEVM 238
R+ L+ +
Sbjct: 351 REFLKSL 357
>gi|432888946|ref|XP_004075101.1| PREDICTED: retinoic acid receptor RXR-alpha-A [Oryzias latipes]
Length = 471
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 112/233 (48%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + C++ + RNRCQYCR++KCLA+GM R++V+ R +R++
Sbjct: 165 KGFFKRTVRKDLTYTCRDNKDCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRAK 222
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E++++E ST S + PV+ IL +A
Sbjct: 223 EKNENEVEST----------SCVNEDMPVEK-----------------ILEAEEA----- 250
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T + +S+P + + P T C + + Q F +VE+
Sbjct: 251 --VEPKTETYIETNLSVPSNSPNDP----VTNICQAADK----QLFT---------LVEW 291
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F DL DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 292 AKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 344
>gi|410222730|gb|JAA08584.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410251064|gb|JAA13499.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410306614|gb|JAA31907.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410353913|gb|JAA43560.1| retinoid X receptor, alpha [Pan troglodytes]
Length = 462
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 156 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 213
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 214 DRNENEVEST----------SSANEDMPVERI-------------LEAELAV-------- 242
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L PS + P T C + + Q F +VE+
Sbjct: 243 ---EPKTETYVEANMGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 282
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 283 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 335
>gi|171362733|dbj|BAG14373.1| retinoid X receptor alpha homolog [Lepisosteus platyrhinchus]
Length = 288
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + C++ + RNRCQYCR++KCLA+GM R++V+ R +RS+
Sbjct: 16 KGFFKRTVRKDLTYTCRDNKDCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRSK 73
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + D LAV
Sbjct: 74 DRNENEVEST----------SSANEDMPVEKI-------------LDAELAV-------- 102
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T + + +P + + P T C + + Q F +VE+
Sbjct: 103 ---EPKTDTYIETNLGMPSNSPNDP----VTNICQAADK----QLFT---------LVEW 142
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 143 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 195
>gi|449478039|ref|XP_002196179.2| PREDICTED: retinoic acid receptor RXR-alpha [Taeniopygia guttata]
Length = 439
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 133 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 190
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 191 DRNENEVEST----------SSANEDMPVEKI-------------LEAELAV-------- 219
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T + + L PS + P T C + + Q F +VE+
Sbjct: 220 ---EPKTETYIEANMGLTPSSPNDP----VTNICQAADK----QLFT---------LVEW 259
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 260 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 312
>gi|383872390|ref|NP_001244539.1| retinoic acid receptor RXR-gamma [Macaca mulatta]
gi|355558991|gb|EHH15771.1| hypothetical protein EGK_01907 [Macaca mulatta]
gi|355746155|gb|EHH50780.1| hypothetical protein EGM_01657 [Macaca fascicularis]
gi|380815424|gb|AFE79586.1| retinoic acid receptor RXR-gamma isoform a [Macaca mulatta]
Length = 463
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 160 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 217
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE AE SS PV+ + + LAV S
Sbjct: 218 ERAESE----------AECASSGHEDMPVERI-------------LEAELAVEPKTES-- 252
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 253 -YGDMNMENSTNDPV---------------TNICHAADK----QLFT---------LVEW 283
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 284 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>gi|197101785|ref|NP_001124824.1| retinoic acid receptor RXR-gamma [Pongo abelii]
gi|402858038|ref|XP_003893537.1| PREDICTED: retinoic acid receptor RXR-gamma [Papio anubis]
gi|75062013|sp|Q5REL6.1|RXRG_PONAB RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|55726030|emb|CAH89791.1| hypothetical protein [Pongo abelii]
Length = 463
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 160 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 217
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE AE SS PV+ + + LAV S
Sbjct: 218 ERAESE----------AECASSGHEDMPVERI-------------LEAELAVEPKTES-- 252
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 253 -YGDMNMENSTNDPV---------------TNICHAADK----QLFT---------LVEW 283
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 284 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>gi|4506755|ref|NP_002948.1| retinoic acid receptor RXR-alpha [Homo sapiens]
gi|133701|sp|P19793.1|RXRA_HUMAN RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|35885|emb|CAA36982.1| unnamed protein product [Homo sapiens]
gi|84201602|gb|AAI10999.1| Retinoid X receptor, alpha [Homo sapiens]
gi|119608529|gb|EAW88123.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|119608530|gb|EAW88124.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|167773495|gb|ABZ92182.1| retinoid X receptor, alpha [synthetic construct]
gi|208965438|dbj|BAG72733.1| retinoid X receptor, alpha [synthetic construct]
gi|216409718|dbj|BAH02296.1| retinoid X receptor, alpha [Homo sapiens]
gi|325495497|gb|ADZ17354.1| retinoid X nuclear receptor alpha [Homo sapiens]
gi|380815422|gb|AFE79585.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|383420605|gb|AFH33516.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|226861|prf||1609194A retinoic acid receptor RXRalpha
Length = 462
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 156 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 213
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 214 DRNENEVEST----------SSANEDMPVERI-------------LEAELAV-------- 242
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L PS + P T C + + Q F +VE+
Sbjct: 243 ---EPKTETYVEANMGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 282
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 283 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 335
>gi|397503782|ref|XP_003822498.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Pan paniscus]
gi|402896147|ref|XP_003911168.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Papio anubis]
gi|410043384|ref|XP_520345.4| PREDICTED: retinoic acid receptor RXR-alpha [Pan troglodytes]
gi|193785958|dbj|BAG54745.1| unnamed protein product [Homo sapiens]
Length = 365
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 59 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 116
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 117 DRNENEVEST----------SSANEDMPVERI-------------LEAELAV-------- 145
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L PS + P T C + + Q F +VE+
Sbjct: 146 ---EPKTETYVEANMGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 185
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 186 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 238
>gi|4377451|emb|CAA51523.1| DR-78 [Drosophila melanogaster]
Length = 113
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/45 (95%), Positives = 45/45 (100%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGM 47
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCL+VGM
Sbjct: 68 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSVGM 112
>gi|400974222|ref|NP_001257887.1| nuclear receptor ROR-beta [Rattus norvegicus]
gi|109463688|ref|XP_001079696.1| PREDICTED: nuclear receptor ROR-beta isoform 1 [Rattus norvegicus]
Length = 459
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 119/284 (41%), Gaps = 90/284 (31%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMS-------------R 49
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMS R
Sbjct: 31 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 90
Query: 50 DSVRYGRVPKRSRERS----------------------------DSETGSTRVSTTGAEP 81
DS+ Y V K + ++ETG T + +
Sbjct: 91 DSL-YAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNTETGGTYANGHVIDL 149
Query: 82 P-----------------SSLETAG-------PVQSLPSSTEL------DTKQL---LTY 108
P S L+ G P+ L S L + QL +T
Sbjct: 150 PKSEGYYNIDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITM 209
Query: 109 DVILAVSQ----AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWL 164
I ++Q +H C+YT E +L + + E+ + + S A L
Sbjct: 210 SEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTY--EEIKAYQSKSREA---------L 258
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
WQQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+
Sbjct: 259 WQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEV 302
>gi|514308|gb|AAA19972.1| peroxisome proliferator-activated receptor delta [Mus musculus]
Length = 440
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 114/253 (45%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C D C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P
Sbjct: 94 KGFFRRTIRMKLEYEKC--DRICKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMP--- 148
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
D E T +E Q P +L Y+ L N
Sbjct: 149 ----DGEKRKLVAGLTASE---------GCQHNPQLADLKAFSKHIYNAYL-------KN 188
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 189 FNMTKKKARSILTG-----KSSHNAPFVIHDIETLWQAEKGLVWKQLVNGLPPYNEISVH 243
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 244 VFYRCQSTTVETVRELTEFAKNIPNFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 303
Query: 224 FSDGM-YVTRQQL 235
++G +VT + L
Sbjct: 304 VANGSGFVTHEFL 316
>gi|426363508|ref|XP_004048881.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Gorilla gorilla
gorilla]
Length = 365
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 59 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 116
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 117 DRNENEVEST----------SSANEDMPVERI-------------LEAELAV-------- 145
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L PS + P T C + + Q F +VE+
Sbjct: 146 ---EPKTETYVEANMGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 185
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 186 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 238
>gi|355567352|gb|EHH23693.1| hypothetical protein EGK_07223, partial [Macaca mulatta]
Length = 453
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 147 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 204
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 205 DRNENEVEST----------SSANEDMPVERI-------------LEAELAV-------- 233
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L PS + P T C + + Q F +VE+
Sbjct: 234 ---EPKTETYVEANMGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 273
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 274 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 326
>gi|55832822|gb|AAV66918.1| thyroid hormone receptor beta [Pseudopleuronectes americanus]
Length = 415
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 124/257 (48%), Gaps = 36/257 (14%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V
Sbjct: 53 KGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIVVGMATDLVLNDSKRLA 112
Query: 61 SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH- 119
R+ + R LE P+ E D +++T + +Q +H
Sbjct: 113 KRKLIEENRERRRKEELQKTVWDRLE--------PTQEEWDVIRMVTDAHMSTNAQGNHW 164
Query: 120 ------------------SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQR 161
N YT + + V++ P E+ +A+ T E ++
Sbjct: 165 KQKRKFLVEEAMLLNEITCNLFYTSDQSAAGVKED---KPEEIGQASMAN-TPEGNKVD- 219
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS 220
+ + QF +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S
Sbjct: 220 IEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPES 279
Query: 221 -SLTFSDGMYVTRQQLE 236
+LT + M VTR QL+
Sbjct: 280 ETLTLNGEMAVTRGQLK 296
>gi|228480295|ref|NP_001153203.1| retinoic acid receptor RXR-gamma isoform 2 [Mus musculus]
gi|386369|gb|AAB27245.1| retinoid-X receptor-gamma isoform 2 [Mus sp.]
Length = 340
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 37 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 94
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE AE SS PV+ + + LAV S
Sbjct: 95 ERAESE----------AECASSSHEDMPVERI-------------LEAELAVEPKTES-- 129
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 130 -YGDMNVENSTNDPV---------------TNICHAADK----QLFT---------LVEW 160
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 161 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 212
>gi|40886675|gb|AAR96256.1| retinoid X receptor gamma [Sus scrofa]
Length = 431
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 128 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 185
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE AE SS PV+ + + LAV S
Sbjct: 186 ERAESE----------AECASSGHEDMPVERI-------------LEAELAVEPKTES-- 220
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 221 -YGDMNMENSTNDPV---------------TNICHAADK----QLFT---------LVEW 251
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 252 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 303
>gi|327271223|ref|XP_003220387.1| PREDICTED: peroxisome proliferator-activated receptor delta-like
[Anolis carolinensis]
Length = 442
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 117/254 (46%), Gaps = 52/254 (20%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R+ C + + NRN+CQYCRF+KCL++GMS +++R+GR+P+
Sbjct: 96 KGFFRRTIRMKLEYEKCERN--CKIQKKNRNKCQYCRFQKCLSLGMSHNAIRFGRMPEAE 153
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA-VSQAHHS 120
+ + + +T ++ +QL V + A+
Sbjct: 154 KRKLVAGLTATEINC------------------------QNQQLADLKVFSKHIYNAYLK 189
Query: 121 NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------ 174
N T++ R ++ S P P V ++++ +W+Q + P
Sbjct: 190 NFNMTKKKARGILTGKASSTP-----PFVIHDMDTLWQAEKGLVWKQLINGLPPYKEIGV 244
Query: 175 ------------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSL 222
+V+ + EFAK +P F L +DQ+ L+K G E + + L
Sbjct: 245 HVFYRCQCTTVETVRELTEFAKSIPSFISLYLNDQVTLLKYGVHEAIFAMLPSIMNKDGL 304
Query: 223 TFSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 305 LVANGNGFVTREFL 318
>gi|112821700|ref|NP_001036819.1| nuclear receptor ROR-beta isoform 1 [Mus musculus]
gi|110589523|gb|ABG77269.1| retinoid-related orphan receptor beta 1 isoform [Mus musculus]
Length = 459
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 119/284 (41%), Gaps = 90/284 (31%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMS-------------R 49
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMS R
Sbjct: 31 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 90
Query: 50 DSVRYGRVPKRSRERS----------------------------DSETGSTRVSTTGAEP 81
DS+ Y V K + ++ETG T + +
Sbjct: 91 DSL-YAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNTETGGTYANGHVIDL 149
Query: 82 P-----------------SSLETAG-------PVQSLPSSTEL------DTKQL---LTY 108
P S L+ G P+ L S L + QL +T
Sbjct: 150 PKSEGYYSIDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITM 209
Query: 109 DVILAVSQ----AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWL 164
I ++Q +H C+YT E +L + + E+ + + S A L
Sbjct: 210 SEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTY--EEIKAYQSKSREA---------L 258
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
WQQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+
Sbjct: 259 WQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEV 302
>gi|449269569|gb|EMC80331.1| Nuclear receptor ROR-beta, partial [Columba livia]
Length = 461
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 115/284 (40%), Gaps = 90/284 (31%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMS-------------R 49
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMS R
Sbjct: 33 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 92
Query: 50 DSVRYGRVPKR------------------SRERSDS----------ETGSTRVSTTGAEP 81
DS+ Y V K +R S+S +TGST + +
Sbjct: 93 DSL-YAEVQKHQQRLQEQRQQQSGEAEALARVYSNSISNGLSNLNNDTGSTYSNGHVIDL 151
Query: 82 PSS--LETAGPVQSLPSSTELD------TKQLLTYD------------------------ 109
P S Q P + LD KQ YD
Sbjct: 152 PKSEGYYNVDSAQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGISM 211
Query: 110 -----VILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWL 164
+ + ++H C+YT E +L + + +V + R L
Sbjct: 212 TEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKVYQSKT-----------REAL 260
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
WQQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+
Sbjct: 261 WQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEV 304
>gi|167016572|sp|Q0GFF6.2|RXRG_PIG RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 463
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 160 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 217
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE AE SS PV+ + + LAV S
Sbjct: 218 ERAESE----------AECASSGHEDMPVERI-------------LEAELAVEPKTES-- 252
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 253 -YGDMNMENSTNDPV---------------TNICHAADK----QLFT---------LVEW 283
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 284 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>gi|149058123|gb|EDM09280.1| retinoid X receptor gamma, isoform CRA_b [Rattus norvegicus]
Length = 415
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 160 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 217
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE ++TG E ++ +++L + LAV S
Sbjct: 218 ERAESE---AECASTGHE------------------DMPVERILEAE--LAVEPKTES-- 252
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 253 -YGDMSVESSTNDPV---------------TNICHAADK----QLFT---------LVEW 283
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 284 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>gi|194332487|ref|NP_001123685.1| retinoic acid receptor RXR-gamma [Sus scrofa]
gi|112820329|gb|ABI24018.1| retinoid X receptor gamma [Sus scrofa]
Length = 463
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 160 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 217
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE AE SS PV+ + + LAV S
Sbjct: 218 ERAESE----------AECASSGHEDMPVERI-------------LEAELAVEPKTES-- 252
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 253 -YGDMNMENSTNDPV---------------TNICHAADK----QLFT---------LVEW 283
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 284 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>gi|83026436|gb|ABB96254.1| retinoid X receptor, alpha [Homo sapiens]
Length = 452
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 146 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 203
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 204 DRNENEVEST----------SSANEDMPVERI-------------LEAELAV-------- 232
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L PS + P T C + + Q F +VE+
Sbjct: 233 ---EPKTETYVEANMGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 272
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 273 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 325
>gi|354472061|ref|XP_003498259.1| PREDICTED: thyroid hormone receptor beta-like [Cricetulus griseus]
Length = 475
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 39/244 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 142 KGFFRRTIQKSLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 201
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + G +P P+ E +++I V++
Sbjct: 202 KRKLIEENREKRRREELQKSIGHKPE------------PTDEE--------WELIKTVTE 241
Query: 117 AH-HSNCEYTE-EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP 174
AH +N + + + R+ + + + P V++PE E + F +TP
Sbjct: 242 AHVATNAQGSHWKQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSHFTKIITP 292
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTR 232
++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR
Sbjct: 293 AITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTR 352
Query: 233 QQLE 236
QL+
Sbjct: 353 GQLK 356
>gi|297677918|ref|XP_002816833.1| PREDICTED: peroxisome proliferator-activated receptor delta isoform
1 [Pongo abelii]
Length = 441
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 152
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + V+ A S Q P +L Y+ L N
Sbjct: 153 KRK--------LVAGLTANEGS--------QYNPQVADLKAFSKHIYNAYL-------KN 189
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 190 FNMTKKKARSILTGKAS-----HTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVH 244
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 245 VFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 304
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 305 VANGSGFVTREFL 317
>gi|158256754|dbj|BAF84350.1| unnamed protein product [Homo sapiens]
Length = 441
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 116/253 (45%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 152
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + + + S Q P +L Y+ L N
Sbjct: 153 KRKLVAGLTANEGS----------------QYNPQVADLKAFSKHIYNAYL-------KN 189
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 190 FNMTKKKARSILTGKASH-----TAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVH 244
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 245 VFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 304
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 305 VANGSGFVTREFL 317
>gi|90076842|dbj|BAE88101.1| unnamed protein product [Macaca fascicularis]
Length = 277
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 10 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 67
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE AE SS PV+ + + LAV S
Sbjct: 68 ERAESE----------AECASSGHEDMPVERILEAE-------------LAVEPKTES-- 102
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 103 -YGDMNMENSTNDPV---------------TNICHAADK----QLFT---------LVEW 133
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 134 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 185
>gi|5453940|ref|NP_006229.1| peroxisome proliferator-activated receptor delta isoform 1 [Homo
sapiens]
gi|284807155|ref|NP_001165289.1| peroxisome proliferator-activated receptor delta isoform 1 [Homo
sapiens]
gi|417522|sp|Q03181.1|PPARD_HUMAN RecName: Full=Peroxisome proliferator-activated receptor delta;
Short=PPAR-delta; AltName: Full=NUCI; AltName:
Full=Nuclear hormone receptor 1; Short=NUC1; AltName:
Full=Nuclear receptor subfamily 1 group C member 2;
AltName: Full=Peroxisome proliferator-activated receptor
beta; Short=PPAR-beta
gi|190230|gb|AAA36469.1| peroxisome proliferator activated receptor [Homo sapiens]
gi|7417395|gb|AAF62553.1| peroxisome proliferative activated receptor delta [Homo sapiens]
gi|37953281|gb|AAR05439.1| peroxisome proliferative activated receptor, delta [Homo sapiens]
gi|60115375|gb|AAX14041.1| peroxisome proliferator activated receptor delta [Homo sapiens]
gi|119624230|gb|EAX03825.1| peroxisome proliferative activated receptor, delta, isoform CRA_a
[Homo sapiens]
gi|119624232|gb|EAX03827.1| peroxisome proliferative activated receptor, delta, isoform CRA_a
[Homo sapiens]
gi|119624233|gb|EAX03828.1| peroxisome proliferative activated receptor, delta, isoform CRA_a
[Homo sapiens]
gi|193784080|dbj|BAG53624.1| unnamed protein product [Homo sapiens]
gi|208965328|dbj|BAG72678.1| peroxisome proliferator-activated receptor delta [synthetic
construct]
Length = 441
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 152
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + V+ A S Q P +L Y+ L N
Sbjct: 153 KRK--------LVAGLTANEGS--------QYNPQVADLKAFSKHIYNAYL-------KN 189
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 190 FNMTKKKARSILTGKASH-----TAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVH 244
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 245 VFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 304
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 305 VANGSGFVTREFL 317
>gi|296191131|ref|XP_002743523.1| PREDICTED: retinoic acid receptor RXR-alpha [Callithrix jacchus]
Length = 603
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 297 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 354
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 355 DRNENEVEST----------SSANEDMPVERI-------------LEAELAV-------- 383
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V V L PS + P T C + + Q F +VE+
Sbjct: 384 ---EPKTETYVEANVGLNPSSPNDP----VTNICQAADK----QLFT---------LVEW 423
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 424 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 476
>gi|396095756|gb|AFN85443.1| peroxisome proliferator-activated receptor alpha [Columba livia]
Length = 468
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 19/238 (7%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y +C R+ C + + NRN+CQYCRF+KCL+VGMS +++R+GR+P+
Sbjct: 123 KGFFRRTIRLKLIYVKCDRN--CKIQKKNRNKCQYCRFQKCLSVGMSHNAIRFGRMPRSE 180
Query: 62 RERSDSE--TGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH 119
+ + +E TG V + SL V L + K +ILA ++
Sbjct: 181 KAKLKAEILTGENYVEDSEMADLKSLAKRIHVAYLKNFNMNKVKA----RIILAGKTNNN 236
Query: 120 SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRV 179
+ T + K + +++ + + + AE R++ Q + +V V
Sbjct: 237 PPFVIHDMDTLCMAEKTLV---AKLVANGIQNKEAEV----RIFHCCQCTS--VETVTEV 287
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSDGMYVTRQQLE 236
EFAK +PGF L +DQ+ L+K G +E ++ S + D L ++TR+ L+
Sbjct: 288 TEFAKSIPGFSSLDLNDQVTLLKYGVYEAIFAMLASVMNKDGMLVAYGNGFITREFLK 345
>gi|348576346|ref|XP_003473948.1| PREDICTED: peroxisome proliferator-activated receptor delta [Cavia
porcellus]
Length = 440
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C D C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 94 KGFFRRTIRMKLEYEKC--DRNCKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 151
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + + + + Q P +L Y+ L N
Sbjct: 152 KRKLVAGLTANKGH----------------QHNPQLADLKAFSKHIYNAYL-------KN 188
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V + ++++ +W+Q + P
Sbjct: 189 FNMTKKKARSILTG-----KSSHTAPFVIHNIETLWQAEKGLVWKQLVNGLPPYKEISVH 243
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 244 VFYRCQCTTVETVRELTEFAKNIPNFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 303
Query: 224 FSDGM-YVTRQQL 235
++G +VT + L
Sbjct: 304 VANGSGFVTHEFL 316
>gi|37194675|gb|AAH58269.1| Rorb protein, partial [Mus musculus]
Length = 462
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 119/284 (41%), Gaps = 90/284 (31%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMS-------------R 49
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMS R
Sbjct: 34 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 93
Query: 50 DSVRYGRVPKRSRERS----------------------------DSETGSTRVSTTGAEP 81
DS+ Y V K + ++ETG T + +
Sbjct: 94 DSL-YAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNTETGGTYANGHVIDL 152
Query: 82 P-----------------SSLETAG-------PVQSLPSSTEL------DTKQL---LTY 108
P S L+ G P+ L S L + QL +T
Sbjct: 153 PKSEGYYSIDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITM 212
Query: 109 DVILAVSQ----AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWL 164
I ++Q +H C+YT E +L + + E+ + + S A L
Sbjct: 213 SEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTY--EEIKAYQSKSREA---------L 261
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
WQQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+
Sbjct: 262 WQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEV 305
>gi|61657903|ref|NP_113953.1| retinoic acid receptor RXR-gamma [Rattus norvegicus]
gi|81888393|sp|Q5BJR8.1|RXRG_RAT RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|60551535|gb|AAH91363.1| Retinoid X receptor gamma [Rattus norvegicus]
gi|149058122|gb|EDM09279.1| retinoid X receptor gamma, isoform CRA_a [Rattus norvegicus]
Length = 463
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 160 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 217
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE ++TG E ++ +++L + LAV S
Sbjct: 218 ERAESE---AECASTGHE------------------DMPVERILEAE--LAVEPKTES-- 252
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 253 -YGDMSVESSTNDPV---------------TNICHAADK----QLFT---------LVEW 283
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 284 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>gi|397474193|ref|XP_003808572.1| PREDICTED: peroxisome proliferator-activated receptor delta isoform
1 [Pan paniscus]
gi|397474195|ref|XP_003808573.1| PREDICTED: peroxisome proliferator-activated receptor delta isoform
2 [Pan paniscus]
Length = 441
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 116/253 (45%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 152
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + + + S Q P +L Y+ L N
Sbjct: 153 KRKLVAGLTANEGS----------------QYNPQVADLKAFSKHIYNAYL-------KN 189
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 190 FNMTKKKARSILTGKASH-----TAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVH 244
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 245 VFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 304
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 305 VANGSGFVTREFL 317
>gi|114607054|ref|XP_518905.2| PREDICTED: peroxisome proliferator-activated receptor delta isoform
6 [Pan troglodytes]
gi|402866757|ref|XP_003897541.1| PREDICTED: peroxisome proliferator-activated receptor delta [Papio
anubis]
gi|410217754|gb|JAA06096.1| peroxisome proliferator-activated receptor delta [Pan troglodytes]
gi|410267582|gb|JAA21757.1| peroxisome proliferator-activated receptor delta [Pan troglodytes]
gi|410299412|gb|JAA28306.1| peroxisome proliferator-activated receptor delta [Pan troglodytes]
gi|410350977|gb|JAA42092.1| peroxisome proliferator-activated receptor delta [Pan troglodytes]
Length = 441
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 116/253 (45%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 152
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + + + S Q P +L Y+ L N
Sbjct: 153 KRKLVAGLTANEGS----------------QYNPQVADLKAFSKHIYNAYL-------KN 189
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 190 FNMTKKKARSILTGKASH-----TAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVH 244
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 245 VFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 304
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 305 VANGSGFVTREFL 317
>gi|449273309|gb|EMC82832.1| Peroxisome proliferator-activated receptor alpha, partial [Columba
livia]
Length = 469
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 19/238 (7%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y +C R+ C + + NRN+CQYCRF+KCL+VGMS +++R+GR+P+
Sbjct: 124 KGFFRRTIRLKLIYVKCDRN--CKIQKKNRNKCQYCRFQKCLSVGMSHNAIRFGRMPRSE 181
Query: 62 RERSDSE--TGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH 119
+ + +E TG V + SL V L + K +ILA ++
Sbjct: 182 KAKLKAEILTGENYVEDSEMADLKSLAKRIHVAYLKNFNMNKVKA----RIILAGKTNNN 237
Query: 120 SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRV 179
+ T + K + +++ + + + AE R++ Q + +V V
Sbjct: 238 PPFVIHDMDTLCMAEKTLV---AKLVANGIQNKEAEV----RIFHCCQCTS--VETVTEV 288
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSDGMYVTRQQLE 236
EFAK +PGF L +DQ+ L+K G +E ++ S + D L ++TR+ L+
Sbjct: 289 TEFAKSIPGFSSLDLNDQVTLLKYGVYEAIFAMLASVMNKDGMLVAYGNGFITREFLK 346
>gi|147900408|ref|NP_001091099.1| peroxisome proliferators-activated receptor alpha1 [Takifugu
rubripes]
gi|138996278|dbj|BAF52667.1| peroxisome proliferators-activated receptor alpha1 [Takifugu
rubripes]
Length = 469
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 120/253 (47%), Gaps = 44/253 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R +C + + NRN+CQYCRF+KCL+VGMS +++R+GR+P+
Sbjct: 124 KGFFRRTIRLKLEYDKCER--RCKIQKKNRNKCQYCRFQKCLSVGMSHNAIRFGRMPQSE 181
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + +E TG A D K L + +A+ N
Sbjct: 182 KLKLKAEM------VTGDREVDDPRVA------------DQKTLAR-----QIYEAYLKN 218
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPE------------VASSTAECHESQ---RLWLWQ 166
+ R ++ S PP + E + SS + + R++
Sbjct: 219 FNMNKAKARSILSGKTSTPPFVIRDMETLQLAEQTRVAKMVSSEGTLKDREVEVRIFHCC 278
Query: 167 QFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFS 225
Q+ + +V + EFAK VPGF L +DQ+ L+K G +E L+ S + D L
Sbjct: 279 QYTS--VETVTELTEFAKSVPGFSRLDLNDQVTLLKYGVYEALFAMLASCMNKDGLLVAY 336
Query: 226 DGMYVTRQQLEVM 238
++TR+ L+ +
Sbjct: 337 SSGFITREFLKSL 349
>gi|348565839|ref|XP_003468710.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Cavia porcellus]
Length = 451
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 114/232 (49%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 148 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 205
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE + +++G E ++ +++L + LAV S
Sbjct: 206 ERAESE---AKGASSGHE------------------DMPVERILEAE--LAVEPKTES-- 240
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 241 -YGDVNMENSTNDPV---------------TNICHAADK----QLFT---------LVEW 271
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 272 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 323
>gi|348512875|ref|XP_003443968.1| PREDICTED: peroxisome proliferator-activated receptor alpha
[Oreochromis niloticus]
Length = 469
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 117/249 (46%), Gaps = 40/249 (16%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R +C + + NRN+CQYCRF+KCL+VGMS +++R+GR+P+
Sbjct: 124 KGFFRRTIRLKLEYDKCER--RCKIQKKNRNKCQYCRFQKCLSVGMSHNAIRFGRMPQSE 181
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + +E + E P + D K L + + +A+ N
Sbjct: 182 KLKLKAEMVTV-----------DKEVENPQLA-------DQKTLAKH-----IYEAYLKN 218
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPE-------------VASSTAECHESQRLWLWQQF 168
+ R ++ + P + E V S A + + ++
Sbjct: 219 FNMNKAKARSILMGKTNTAPFVIHDMETLQLAEQTLVAKMVGSVGAMKDKEVEVRIFHCC 278
Query: 169 AAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSDG 227
+V + EFAK VPGF +L +DQ+ L+K G +E ++ S + D L
Sbjct: 279 QCTSVETVTELTEFAKSVPGFSNLDLNDQVTLLKYGVYEAIFAMLASSMNKDGLLVAYGS 338
Query: 228 MYVTRQQLE 236
++TR+ L+
Sbjct: 339 GFITREFLK 347
>gi|284807157|ref|NP_001165290.1| peroxisome proliferator-activated receptor delta isoform 3 [Homo
sapiens]
gi|221041340|dbj|BAH12347.1| unnamed protein product [Homo sapiens]
Length = 402
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 56 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 113
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + V+ A S Q P +L Y+ L N
Sbjct: 114 KRK--------LVAGLTANEGS--------QYNPQVADLKAFSKHIYNAYL-------KN 150
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 151 FNMTKKKARSILTGKASH-----TAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVH 205
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 206 VFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 265
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 266 VANGSGFVTREFL 278
>gi|351696221|gb|EHA99139.1| Retinoic acid receptor RXR-gamma [Heterocephalus glaber]
Length = 463
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 114/232 (49%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 160 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 217
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE + +++G E ++ +++L + LAV S
Sbjct: 218 ERAESE---AKGASSGHE------------------DMPVERILEAE--LAVEPKTES-- 252
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 253 -YGDMNMENSTNDPV---------------TNICHAADK----QLFT---------LVEW 283
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 284 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>gi|57015329|sp|O57606.2|THA_NECMA RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear
receptor subfamily 1 group A member 1
gi|51491323|emb|CAA76327.2| thyroid hormone receptor alpha [Necturus maculosus]
Length = 408
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 122/242 (50%), Gaps = 35/242 (14%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 72 KGFFRRTIQKNLHPSYSCKYDACCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 131
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR ++ E E +Q+ P T + +++I V+ AH
Sbjct: 132 KR------------KLIEENRERRRKEEMLKSMQNRPEPTSEE------WELIRLVTDAH 173
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWL--WQQFAAHVTPSV 176
C +G+ ++ LP + P A E+ R+ L + +F +TP++
Sbjct: 174 ---CSTNAQGSHWKQKRKF-LPDAIGQCPMTAVP-----ENDRVDLEAFSEFTKIITPAI 224
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQ 234
RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V R+Q
Sbjct: 225 TRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQ 284
Query: 235 LE 236
L+
Sbjct: 285 LK 286
>gi|15741102|gb|AAL06725.1| thyroid hormone receptor alpha [Oncorhynchus mykiss]
Length = 227
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 119/236 (50%), Gaps = 33/236 (13%)
Query: 8 RSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVPKRSRE 63
R+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D V RV KR
Sbjct: 1 RTIQKNLHPAYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKR--- 57
Query: 64 RSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH-HSNC 122
R+ E E +Q+ P T + +++I +++AH H+N
Sbjct: 58 ---------RLIEENREKRKKEEMVKTLQNRPEPTGSE------WELIRMLTEAHRHTNA 102
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + +R P ++ VA ++ + L + +F +TP++ RVV+F
Sbjct: 103 QGSHWKQKR------KFLPEDIGQSPVAPTSD--GDKVDLEAFSEFTKIITPAITRVVDF 154
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQLE 236
AK++P F +L +DQ+IL+K E+ + R +S +LT S M V R+QL+
Sbjct: 155 AKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQLK 210
>gi|332823850|ref|XP_003311287.1| PREDICTED: peroxisome proliferator-activated receptor delta [Pan
troglodytes]
gi|397474197|ref|XP_003808574.1| PREDICTED: peroxisome proliferator-activated receptor delta isoform
3 [Pan paniscus]
Length = 402
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 56 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 113
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + V+ A S Q P +L Y+ L N
Sbjct: 114 KRK--------LVAGLTANEGS--------QYNPQVADLKAFSKHIYNAYL-------KN 150
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 151 FNMTKKKARSILTGKASH-----TAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVH 205
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 206 VFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 265
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 266 VANGSGFVTREFL 278
>gi|441431287|gb|AGC31488.1| peroxisome proliferator activated receptor a1 [Scophthalmus
maximus]
Length = 469
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 116/251 (46%), Gaps = 40/251 (15%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R +C + + NRN+CQYCRF+KCL+VGMS +++R+GR+P+
Sbjct: 124 KGFFRRTIRLKLEYDKCER--RCKIQKKNRNKCQYCRFQKCLSVGMSHNAIRFGRMPQSE 181
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + +E TG + A D K L + +A+ N
Sbjct: 182 KLKLKAEM------VTGDREVGDPQIA------------DQKTLAR-----QIYEAYLKN 218
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPE-------------VASSTAECHESQRLWLWQQF 168
+ R ++ + PP + E V S+ + ++
Sbjct: 219 FNMHKAKARTILTGKTTTPPFVIHDMETLQLAEQTLVAKMVGSAGVLKDREVEVRIFHCC 278
Query: 169 AAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSDG 227
+V + EFAK VPGF L +DQ+ L+K G +E L+ S + D L
Sbjct: 279 QCTSVETVTELTEFAKSVPGFSSLDLNDQVTLLKYGVYEALFAMLASSMNKDGLLVAYGS 338
Query: 228 MYVTRQQLEVM 238
++TR+ L+ +
Sbjct: 339 GFITREFLKSL 349
>gi|30583763|gb|AAP36130.1| Homo sapiens peroxisome proliferative activated receptor, delta
[synthetic construct]
gi|60653331|gb|AAX29360.1| peroxisome proliferative activated receptor delta [synthetic
construct]
gi|60653333|gb|AAX29361.1| peroxisome proliferative activated receptor delta [synthetic
construct]
Length = 362
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 152
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + V+ A S Q P +L Y+ L N
Sbjct: 153 KRK--------LVAGLTANEGS--------QYNPQVADLKAFSKHIYNAYL-------KN 189
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 190 FNMTKKKARSILTGKASH-----TAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVH 244
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 245 VFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 304
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 305 VANGSGFVTREFL 317
>gi|6981382|ref|NP_037328.1| peroxisome proliferator-activated receptor alpha [Rattus
norvegicus]
gi|585718|sp|P37230.1|PPARA_RAT RecName: Full=Peroxisome proliferator-activated receptor alpha;
Short=PPAR-alpha; AltName: Full=Nuclear receptor
subfamily 1 group C member 1
gi|206318|gb|AAA41918.1| peroxisome proliferator activated receptor [Rattus norvegicus]
gi|149065700|gb|EDM15573.1| peroxisome proliferator activated receptor alpha [Rattus
norvegicus]
Length = 468
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 114/248 (45%), Gaps = 39/248 (15%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y +C D C + + NRN+CQYCRF KCL+VGMS +++R+GR+P+
Sbjct: 123 KGFFRRTIRLKLAYDKC--DRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSE 180
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + +E + L S D K L + +A+ N
Sbjct: 181 KAKLKAEILTCE------------------HDLKDSETADLKSLAK-----RIHEAYLKN 217
Query: 122 CEYTEEGTRR-LVRKPVSLPPSEVSSPE---------VASSTAECHESQ--RLWLWQQFA 169
+ R L K + PP + E VA A E++ + +
Sbjct: 218 FNMNKVKARVILAGKTSNNPPFVIHDMETLCMAEKTLVAKMVANGVENKEAEVRFFHCCQ 277
Query: 170 AHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM- 228
+V + EFAK +PGF +L +DQ+ L+K G +E +S L + + G
Sbjct: 278 CMSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMNKDGMLIAYGNG 337
Query: 229 YVTRQQLE 236
++TR+ L+
Sbjct: 338 FITREFLK 345
>gi|6094472|sp|O42295.2|THA_APTPA RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear
receptor subfamily 1 group A member 1
Length = 402
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 118/242 (48%), Gaps = 35/242 (14%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC++VGM+ D V RV
Sbjct: 72 KGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVA 131
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + + P PS+ E +++I V++
Sbjct: 132 KRKLIEENRERRRKEEMIKSLQHRPN------------PSAEE--------WELIHVVTE 171
Query: 117 AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
AH S T +K LP SP + + L + +F +TP++
Sbjct: 172 AHRS----TNAQGSHWKQKRKFLPEDIGQSPMASMPDG---DKVDLEAFSEFTKIITPAI 224
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQ 234
RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V R+Q
Sbjct: 225 TRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQ 284
Query: 235 LE 236
L+
Sbjct: 285 LK 286
>gi|29171750|ref|NP_803184.1| peroxisome proliferator-activated receptor delta isoform 2 [Homo
sapiens]
gi|12803755|gb|AAH02715.1| PPARD protein [Homo sapiens]
gi|14043181|gb|AAH07578.1| PPARD protein [Homo sapiens]
gi|119624231|gb|EAX03826.1| peroxisome proliferative activated receptor, delta, isoform CRA_b
[Homo sapiens]
gi|325495541|gb|ADZ17376.1| peroxisome proliferator-activated nuclear receptor beta/delta
variant 2 [Homo sapiens]
gi|410217756|gb|JAA06097.1| peroxisome proliferator-activated receptor delta [Pan troglodytes]
Length = 361
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 152
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + V+ A S Q P +L Y+ L N
Sbjct: 153 KRK--------LVAGLTANEGS--------QYNPQVADLKAFSKHIYNAYL-------KN 189
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 190 FNMTKKKARSILTGKASH-----TAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVH 244
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 245 VFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 304
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 305 VANGSGFVTREFL 317
>gi|94467591|dbj|BAE93688.1| RAR related orphan receptor beta [Mus musculus]
Length = 459
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 118/283 (41%), Gaps = 88/283 (31%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMS-------------R 49
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMS R
Sbjct: 31 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 90
Query: 50 DSVRYG-----------------------RVPKRSRERS----DSETGSTRVSTTGAEPP 82
DS+ G RV S ++ETG T + + P
Sbjct: 91 DSLYAGVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNTETGGTYANGHVIDLP 150
Query: 83 -----------------SSLETAG-------PVQSLPSSTEL------DTKQL---LTYD 109
S L+ G P+ L S L + QL +T
Sbjct: 151 KSEGYYSIDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITLS 210
Query: 110 VILAVSQ----AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLW 165
I ++Q +H C+YT E L + + E+ + + S A LW
Sbjct: 211 EIDRIAQNIIKSHLETCQYTMEELHHLAWQTHTY--EEIKAYQSKSREA---------LW 259
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
QQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+
Sbjct: 260 QQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEV 302
>gi|113931620|ref|NP_001039261.1| thyroid hormone receptor, alpha [Xenopus (Silurana) tropicalis]
gi|91754110|dbj|BAE93230.1| thyroid hormone receptor alpha [Xenopus (Silurana) tropicalis]
Length = 418
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 118/243 (48%), Gaps = 37/243 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ RFKKC+AVGM+ D V RV
Sbjct: 82 KGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLRRFKKCIAVGMAMDLVLDDTKRVA 141
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + T P S E +++I V++
Sbjct: 142 KRKLIEENRERRRKEEMIKTLQQRPEPSKE--------------------EWELIRIVTE 181
Query: 117 AHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPS 175
AH S N + + RR P ++ +AS + L + +F +TP+
Sbjct: 182 AHRSTNAQGSHWKQRR------KFLPEDIGQSPMASMPD--GDKVDLEAFSEFTKIITPA 233
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQ 233
+ RVV+FAK++P F +L +DQ+IL+K E+ + R DS +LT S M V R+
Sbjct: 234 ITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEMAVKRE 293
Query: 234 QLE 236
QL+
Sbjct: 294 QLK 296
>gi|291397512|ref|XP_002715914.1| PREDICTED: retinoid X receptor gamma [Oryctolagus cuniculus]
gi|262263191|dbj|BAI48098.1| retinoid X receptor, gamma [Sus scrofa]
Length = 340
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 37 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 94
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE AE SS PV+ + + LAV S
Sbjct: 95 ERAESE----------AECASSGHEDMPVERI-------------LEAELAVEPKTES-- 129
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 130 -YGDMNMENSTNDPV---------------TNICHAADK----QLFT---------LVEW 160
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 161 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 212
>gi|15741104|gb|AAL06726.1| thyroid hormone receptor beta [Oncorhynchus mykiss]
Length = 229
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 123/250 (49%), Gaps = 42/250 (16%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C + KC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 5 KGFFRRTIQKNLNPTYACKYEAKCIIDKVTRNQCQECRFKKCITVGMATDLVLDDSKRLA 64
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR ++ E E V P ++ + +D+I V++AH
Sbjct: 65 KR------------KLIEESRERRRKEEFQKTVWDRPELSQEE------WDLIRMVTEAH 106
Query: 119 HS-NCEYTEEGTRRLVRKPVSLPPSE---------VSSPEVASSTAECHESQRLWLWQQF 168
S N + +R V + ++ +++PE + E + QF
Sbjct: 107 MSTNAQGNHWKQKRKFLSAVGVKETKPEDIGQAPVINAPEGSKVDIE--------AFSQF 158
Query: 169 AAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSD 226
+TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT +
Sbjct: 159 TKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNG 218
Query: 227 GMYVTRQQLE 236
M VTR QL+
Sbjct: 219 EMAVTRGQLK 228
>gi|210137235|gb|ACJ09039.1| peroxisome proliferator activated receptor alpha [Ctenopharyngodon
idella]
Length = 210
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 113/243 (46%), Gaps = 54/243 (22%)
Query: 9 SIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRERSDS 67
+I+ ++EY +C R+ C + + NRN+CQYCRF+KCLAVGMS +++R+GR+P+ ++R +
Sbjct: 1 TIRLKLEYDKCERN--CKIQKKNRNKCQYCRFRKCLAVGMSHNAIRFGRIPQSEKQRLKA 58
Query: 68 ETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEE 127
E +G E S +LDTK L + +A+ + +
Sbjct: 59 EK-----DVSGKEEHQS-------------PQLDTKSLAR-----QMHEAYLKHFHMNKA 95
Query: 128 GTRRLVRKPVSLPPSEVSSPEV--------------------ASSTAECHESQRLWLWQQ 167
R + S PP + + AS+ E RL+L+ Q
Sbjct: 96 KARVFLTGKTSTPPFVIHDMDPLQHAEKELLTQLLGNMTSGDASTLREREVEARLFLFCQ 155
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
+A+ +V + EFAK VPGF L +DQ+ L+K G +E + +S DG
Sbjct: 156 YAS--VATVTELTEFAKAVPGFATLDLNDQVTLLKYGVYEALFALL------ASCMNKDG 207
Query: 228 MYV 230
+ V
Sbjct: 208 LLV 210
>gi|2780196|emb|CAA11109.1| retinoic acid X receptor gamma-1 [Rattus norvegicus]
Length = 322
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 81 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 138
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE ++TG E ++ +++L + LAV S
Sbjct: 139 ERAESE---AECASTGHE------------------DMPVERILEAE--LAVEPKTES-- 173
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 174 -YGDMSVESSTNDPV---------------TNICHAADK----QLFT---------LVEW 204
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 205 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 256
>gi|197098440|ref|NP_001124655.1| peroxisome proliferator-activated receptor gamma [Pongo abelii]
gi|55725294|emb|CAH89512.1| hypothetical protein [Pongo abelii]
Length = 477
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 126/250 (50%), Gaps = 43/250 (17%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+C+YCRF+KCLAVGMS +++R+GR+P+
Sbjct: 132 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCRYCRFQKCLAVGMSHNAIRFGRMPQAE 189
Query: 62 RERSDSETGS--TRVSTTGAEPPSSLE------------TAGPVQSLPSSTELDTKQLLT 107
+E+ +E S +++ A+ + + T +++ + D +
Sbjct: 190 KEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVI 249
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
YD+ G ++ K ++ P + S EVA R++ Q
Sbjct: 250 YDM------------NSLMMGEDKIKFKHIT--PLQEQSKEVAI---------RIFQGCQ 286
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
F + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G
Sbjct: 287 FRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 344
Query: 228 M-YVTRQQLE 236
++TR+ L+
Sbjct: 345 QGFMTREFLK 354
>gi|126309761|ref|XP_001369851.1| PREDICTED: peroxisome proliferator-activated receptor delta
[Monodelphis domestica]
Length = 441
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 118/253 (46%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C D C V + NRN+CQ+CRF+KCL++GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRMKLEYEKC--DRSCKVQKKNRNKCQHCRFQKCLSLGMSHNAIRFGRMPEAE 152
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + S+ VS +S D K + + A+ N
Sbjct: 153 KRKLVEGLTSSEVSGQ------------------NSQGADLKAFSKH-----IYNAYLKN 189
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF----------AAH 171
T++ R ++ S P P V ++++ +W+Q + H
Sbjct: 190 FNMTKKKARGILTGKASSTP-----PFVIHDMDTLWQAEKGLVWKQLVNGLPQYKEMSVH 244
Query: 172 V--------TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
V +V+ + EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 245 VFYRCQCTTVETVRELTEFAKSIPSFVSLFLNDQVTLLKYGVHEAIFAMLASIMNKDGLL 304
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 305 VANGNGFVTREFL 317
>gi|2582637|emb|CAA05339.1| alpha-thyroid hormone receptor [Aptenodytes patagonicus]
Length = 401
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 118/242 (48%), Gaps = 35/242 (14%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC++VGM+ D V RV
Sbjct: 71 KGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVA 130
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + + P PS+ E +++I V++
Sbjct: 131 KRKLIEENRERRRKEEMIKSLQHRPN------------PSAEE--------WELIHVVTE 170
Query: 117 AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
AH S T +K LP SP + + L + +F +TP++
Sbjct: 171 AHRS----TNAQGSHWKQKRKFLPEDIGQSPMASMPDG---DKVDLEAFSEFTKIITPAI 223
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQ 234
RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V R+Q
Sbjct: 224 TRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQ 283
Query: 235 LE 236
L+
Sbjct: 284 LK 285
>gi|1583309|prf||2120366D retinoid X receptor:ISOTYPE=gamma
Length = 391
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 112/233 (48%), Gaps = 57/233 (24%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + C++ + RNRCQYCR++KCLA+GM R++V+ R +R++
Sbjct: 87 KGFFKRTVRKDLTYTCRDNKDCMIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRAK 144
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ERS++E G ++ ++ +++L + LAV +
Sbjct: 145 ERSEAEFGGC-----------------------ANEDMPVEKILEAE--LAVEPKTET-- 177
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y E +L PS S + ++ + + Q L VE+
Sbjct: 178 -YVE----------ANLSPSANSPNDPVTNICQAADKQLFTL---------------VEW 211
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F DL DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 212 AKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 264
>gi|403272547|ref|XP_003928117.1| PREDICTED: retinoic acid receptor RXR-gamma [Saimiri boliviensis
boliviensis]
Length = 463
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 160 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 217
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE AE SS PV+ + + LAV S
Sbjct: 218 ERAESE----------AECASSGHEDMPVERI-------------LEAELAVEPKTESCG 254
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ E + PV T CH + + Q F +VE+
Sbjct: 255 DMNMENS---TNDPV---------------TNICHAADK----QLFT---------LVEW 283
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 284 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>gi|126297986|ref|XP_001372307.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Monodelphis
domestica]
Length = 489
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 183 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 240
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 241 DRNENEVEST----------SSANEDMPVEKI-------------LEAELAV-------- 269
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T + + L P+ + P T C + + Q F +VE+
Sbjct: 270 ---EPKTETYIEANMGLNPNSPNDP----VTNICQAADK----QLFT---------LVEW 309
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 310 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 362
>gi|348526468|ref|XP_003450741.1| PREDICTED: peroxisome proliferator-activated receptor alpha-like
isoform 1 [Oreochromis niloticus]
Length = 475
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 120/268 (44%), Gaps = 57/268 (21%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R+ C + + NRN+CQYCRF KCL+VGMS +++R+GR+P+
Sbjct: 113 KGFFRRTIRLKLEYDKCERN--CKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPQAE 170
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + E+ E P+ S D K L + + A+ N
Sbjct: 171 KLKLKEESKMVEK-----------EVESPLMS-------DHKFL-----VRQIHDAYMKN 207
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEV--------------------------ASSTAE 155
+ R ++ S PP + E S A
Sbjct: 208 FNMNKAKARLILTGKTSKPPFIIHDMETFQLAERTLAVHMINSDYPESDSVLGQVSPAAS 267
Query: 156 CHE-SQRLWLWQQFAAHVTPSVQRV---VEFAKRVPGFCDLSQDDQLILIKMGFFE-LWI 210
C E QR + F + SV+ V EFAK +PGF L +DQ+ L+K G +E L+
Sbjct: 268 CGELRQREAEARLFHCCQSTSVETVTELTEFAKAMPGFQSLDLNDQVTLLKYGVYEALFT 327
Query: 211 GYVSRLTTDSSLTFSDGMYVTRQQLEVM 238
S + D L G ++TR+ L+ +
Sbjct: 328 LLASCMNKDGLLVARGGGFITREFLKSL 355
>gi|348526470|ref|XP_003450742.1| PREDICTED: peroxisome proliferator-activated receptor alpha-like
isoform 2 [Oreochromis niloticus]
Length = 475
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 120/268 (44%), Gaps = 57/268 (21%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R+ C + + NRN+CQYCRF KCL+VGMS +++R+GR+P+
Sbjct: 113 KGFFRRTIRLKLEYDKCERN--CKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPQAE 170
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + E+ E P+ S D K L + + A+ N
Sbjct: 171 KLKLKEESKMVEK-----------EVESPLMS-------DHKFL-----VRQIHDAYMKN 207
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEV--------------------------ASSTAE 155
+ R ++ S PP + E S A
Sbjct: 208 FNMNKAKARLILTGKTSKPPFIIHDMETFQLAERTLAVHMINSDYPESDSVLGQVSPAAS 267
Query: 156 CHE-SQRLWLWQQFAAHVTPSVQRV---VEFAKRVPGFCDLSQDDQLILIKMGFFE-LWI 210
C E QR + F + SV+ V EFAK +PGF L +DQ+ L+K G +E L+
Sbjct: 268 CGELRQREAEARLFHCCQSTSVETVTELTEFAKAMPGFQSLDLNDQVTLLKYGVYEALFT 327
Query: 211 GYVSRLTTDSSLTFSDGMYVTRQQLEVM 238
S + D L G ++TR+ L+ +
Sbjct: 328 LLASCMNKDGLLVARGGGFITREFLKSL 355
>gi|348516240|ref|XP_003445647.1| PREDICTED: nuclear receptor ROR-beta [Oreochromis niloticus]
Length = 481
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 114/283 (40%), Gaps = 78/283 (27%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMS-------------R 49
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMS R
Sbjct: 40 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 99
Query: 50 DSVRYGRVPK---RSRERSDSETG-------------STRVST----------------- 76
DS+ Y V K R +E+ +TG + +ST
Sbjct: 100 DSL-YAEVQKHQARLQEQRQQQTGEAEALARVYSSSLTNGLSTLNHEIGGTYANGHVIEL 158
Query: 77 ------TGAEPPSSLETAGPVQSLPSSTELD------TKQLLTYDVILAVSQAHHSNCEY 124
GA P Q P + LD KQ YD+ + + +
Sbjct: 159 PKGGHGNGAGVPGGYYGMDSTQPSPDQSGLDMSGMKHIKQEPVYDLTPVPNLFSYGGYQE 218
Query: 125 TEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRL-W------------------LW 165
T+ G + + + + + E Q+L W LW
Sbjct: 219 TQLGPNNVSMGELDRIAQNIIKSHLETCQYTTEELQQLAWQTHSYEEVKMYQSKPRDVLW 278
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
QQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+
Sbjct: 279 QQCAIQITHAIQYVVEFAKRISGFMELCQNDQILLLKSGCLEV 321
>gi|345806213|ref|XP_858806.2| PREDICTED: retinoic acid receptor RXR-alpha isoform 11 [Canis lupus
familiaris]
Length = 492
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 186 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 243
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 244 DRNENEVEST----------SSANEDMPVEKI-------------LEAELAV-------- 272
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T V + L P+ + P T C + + Q F +VE+
Sbjct: 273 ---EPKTETYVDANMGLNPNSPNDP----VTNICQAADK----QLFT---------LVEW 312
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 313 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 365
>gi|149410285|ref|XP_001506054.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Ornithorhynchus
anatinus]
Length = 433
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 127 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 184
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 185 DRNENEVEST----------SSANEDMPVEKI-------------LEAELAV-------- 213
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T + + L P+ + P T C + + Q F +VE+
Sbjct: 214 ---EPKTETYIEANMGLNPNSPNDP----VTNICQAADK----QLFT---------LVEW 253
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 254 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 306
>gi|33859590|ref|NP_035275.1| peroxisome proliferator-activated receptor delta [Mus musculus]
gi|548577|sp|P35396.1|PPARD_MOUSE RecName: Full=Peroxisome proliferator-activated receptor delta;
Short=PPAR-delta; AltName: Full=Nuclear hormone receptor
1; Short=NUC1; AltName: Full=Nuclear receptor subfamily
1 group C member 2; AltName: Full=Peroxisome
proliferator-activated receptor beta; Short=PPAR-beta
gi|452114|gb|AAA63394.1| peroxisome proliferator-activated receptor [Mus musculus]
gi|22450690|emb|CAD44517.1| peroxisome proliferator activated receptor beta/delta [Mus
musculus]
gi|47125286|gb|AAH70398.1| Peroxisome proliferator activator receptor delta [Mus musculus]
Length = 440
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 115/253 (45%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C D C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 94 KGFFRRTIRMKLEYEKC--DRICKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 151
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + + L + Q P +L Y+ L N
Sbjct: 152 KRKL----------------VAGLTASEGCQHNPQLADLKAFSKHIYNAYL-------KN 188
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 189 FNMTKKKARSILTG-----KSSHNAPFVIHDIETLWQAEKGLVWKQLVNGLPPYNEISVH 243
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 244 VFYRCQSTTVETVRELTEFAKNIPNFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 303
Query: 224 FSDGM-YVTRQQL 235
++G +VT + L
Sbjct: 304 VANGSGFVTHEFL 316
>gi|301611491|ref|XP_002935274.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 459
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C C++ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 153 KGFFKRTVRKDLTYTCRDSKDCMIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 210
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER+++E S+ SS PV+ + LD A H+
Sbjct: 211 ERNENEVESS----------SSANEDMPVEKI-----LD---------------AEHA-- 238
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T + + L P+ S P T C + + Q F +VE+
Sbjct: 239 --VEPKTETYIEANMGLAPNSPSDP----VTNICQAADK----QLFT---------LVEW 279
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 280 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 332
>gi|18859345|ref|NP_571228.1| retinoic acid receptor RXR-alpha-B [Danio rerio]
gi|52783417|sp|Q90415.1|RXRAB_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-B;
AltName: Full=Retinoid X receptor alpha-B
gi|1046289|gb|AAC59719.1| retinoid X receptor [Danio rerio]
Length = 379
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 111/233 (47%), Gaps = 57/233 (24%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + C++ + RNRCQYCR++KCLA+GM R++V+ R +R++
Sbjct: 75 KGFFKRTVRKDLTYTCRDNKDCMIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRAK 132
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ERS++E G ++ ++ +++L + LAV +
Sbjct: 133 ERSEAEFGGC-----------------------ANEDMPVEKILEAE--LAVEPKTETYV 167
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E +L PS S + ++ + + Q L VE+
Sbjct: 168 E-------------ANLSPSANSPNDPVTNICQAADKQLFTL---------------VEW 199
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F DL DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 200 AKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 252
>gi|301757013|ref|XP_002914346.1| PREDICTED: peroxisome proliferator-activated receptor delta-like
[Ailuropoda melanoleuca]
Length = 441
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 116/253 (45%), Gaps = 50/253 (19%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KC+A+GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRMKLEYEKCERT--CKIQKKNRNKCQYCRFQKCVALGMSHNAIRFGRMPEAE 152
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ + + L + Q P +L Y+ L N
Sbjct: 153 KRKL----------------VAGLTASEGNQHNPQVADLKAFSKHIYNAYL-------KN 189
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTP------- 174
T++ R ++ S ++P V ++++ +W+Q + P
Sbjct: 190 FNMTKKKARGILTGKASH-----TAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVH 244
Query: 175 -----------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L
Sbjct: 245 VFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLL 304
Query: 224 FSDGM-YVTRQQL 235
++G +VTR+ L
Sbjct: 305 VANGTGFVTREFL 317
>gi|296229938|ref|XP_002760488.1| PREDICTED: retinoic acid receptor RXR-gamma [Callithrix jacchus]
Length = 463
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 110/232 (47%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C + CL+ + RNRCQYCR++KCL +GM R++V+ R +RSR
Sbjct: 160 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRSR 217
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
ER++SE AE S+ PV+ + + LAV S
Sbjct: 218 ERAESE----------AECASNGHEDMPVERI-------------LEAELAVEPKTES-- 252
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
Y + PV T CH + + Q F +VE+
Sbjct: 253 -YGDMNMENSTNDPV---------------TNICHAADK----QLFT---------LVEW 283
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 284 AKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>gi|395506404|ref|XP_003757522.1| PREDICTED: retinoic acid receptor RXR-alpha [Sarcophilus harrisii]
Length = 468
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 55/233 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 162 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 219
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+R+++E ST SS PV+ + + LAV
Sbjct: 220 DRNENEVEST----------SSANEDMPVEKI-------------LEAELAV-------- 248
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
E T + + L P+ + P T C + + Q F +VE+
Sbjct: 249 ---EPKTETYIEANMGLNPNSPNDP----VTNICQAADK----QLFT---------LVEW 288
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 289 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 341
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.132 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,494,338,895
Number of Sequences: 23463169
Number of extensions: 128820508
Number of successful extensions: 397648
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7170
Number of HSP's successfully gapped in prelim test: 577
Number of HSP's that attempted gapping in prelim test: 383337
Number of HSP's gapped (non-prelim): 12069
length of query: 240
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 102
effective length of database: 9,121,278,045
effective search space: 930370360590
effective search space used: 930370360590
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)