BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7884
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HLZ|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1HLZ|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|E Chain E, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|F Chain F, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1A6Y|A Chain A, Reverba Orphan Nuclear ReceptorDNA COMPLEX
pdb|1A6Y|B Chain B, Reverba Orphan Nuclear ReceptorDNA COMPLEX
Length = 94
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 31 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 90
Query: 62 RER 64
++R
Sbjct: 91 KQR 93
>pdb|3DZU|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 419
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 53/70 (75%), Gaps = 3/70 (4%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 74 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 131
Query: 62 RERSDSETGS 71
+E+ +E S
Sbjct: 132 KEKLLAEISS 141
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 234 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 293
Query: 234 QLEVM 238
L+ +
Sbjct: 294 FLKSL 298
>pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 161 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 218
Query: 63 ERSDSETGST 72
+R+++E ST
Sbjct: 219 DRNENEVEST 228
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 284 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 340
>pdb|1DSZ|A Chain A, Structure Of The RxrRAR DNA-Binding Domain Heterodimer
In Complex With The Retinoic Acid Response Element Dr1
Length = 86
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 43/58 (74%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+
Sbjct: 28 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK 85
>pdb|1HRA|A Chain A, The Solution Structure Of The Human Retinoic Acid
Receptor- Beta Dna-Binding Domain
Length = 80
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 40/51 (78%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVR 53
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR
Sbjct: 29 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVR 79
>pdb|1YNW|B Chain B, Crystal Structure Of Vitamin D Receptor And 9-Cis
Retinoic Acid Receptor Dna-Binding Domains Bound To A
Dr3 Response Element
Length = 99
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 27 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 84
Query: 63 ERSDSETGST 72
+R+++E ST
Sbjct: 85 DRNENEVEST 94
>pdb|2ENV|A Chain A, Solution Sturcture Of The C4-Type Zinc Finger Domain
From Human Peroxisome Proliferator-Activated Receptor
Delta
Length = 88
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 45/57 (78%), Gaps = 3/57 (5%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVP 58
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+G P
Sbjct: 31 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGSGP 85
>pdb|2V0V|A Chain A, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|B Chain B, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|C Chain C, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|D Chain D, Crystal Structure Of Rev-Erb Beta
Length = 194
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 37/47 (78%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ +
Sbjct: 16 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLM 62
>pdb|2V7C|A Chain A, Crystal Structure Of Rev-Erb Beta
pdb|2V7C|B Chain B, Crystal Structure Of Rev-Erb Beta
Length = 194
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 36/45 (80%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+
Sbjct: 16 IWEEFSXSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEV 60
>pdb|3CQV|A Chain A, Crystal Structure Of Reverb Beta In Complex With Heme
Length = 199
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 36/45 (80%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+
Sbjct: 21 IWEEFSXSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEV 65
>pdb|1CIT|A Chain A, Dna-Binding Mechanism Of The Monomeric Orphan Nuclear
Receptor Ngfi-B
Length = 89
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 7/65 (10%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRY-------G 55
+GFF+R++QK +Y CL + C V + RNRCQ+CRF+KCLAVGM ++ VR G
Sbjct: 24 KGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 83
Query: 56 RVPKR 60
R+P +
Sbjct: 84 RLPSK 88
>pdb|1R0N|A Chain A, Crystal Structure Of Heterodimeric Ecdsyone Receptor Dna
Binding Complex
Length = 81
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 39/50 (78%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV 52
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V
Sbjct: 27 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 76
>pdb|1BY4|A Chain A, Structure And Mechanism Of The Homodimeric Assembly Of
The Rxr On Dna
pdb|1BY4|B Chain B, Structure And Mechanism Of The Homodimeric Assembly Of
The Rxr On Dna
pdb|1BY4|C Chain C, Structure And Mechanism Of The Homodimeric Assembly Of
The Rxr On Dna
pdb|1BY4|D Chain D, Structure And Mechanism Of The Homodimeric Assembly Of
The Rxr On Dna
Length = 82
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 39/50 (78%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV 52
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V
Sbjct: 29 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 78
>pdb|1DSZ|B Chain B, Structure Of The RxrRAR DNA-Binding Domain Heterodimer
In Complex With The Retinoic Acid Response Element Dr1
Length = 85
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 39/50 (78%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV 52
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V
Sbjct: 29 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 78
>pdb|3M9E|A Chain A, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|B Chain B, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|E Chain E, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|F Chain F, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
Length = 105
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%), Gaps = 2/52 (3%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV 52
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V
Sbjct: 27 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLV 78
>pdb|3N00|A Chain A, Crystal Structure Of A Deletion Mutant Of Human Reverba
Ligand Binding Domain Bound With An Ncor Id1 Peptide
Determined To 2.60a
Length = 245
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ +
Sbjct: 66 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLM 112
>pdb|2NLL|B Chain B, Retinoid X Receptor-Thyroid Hormone Receptor Dna-Binding
Domain Heterodimer Bound To Thyroid Response Element
Dna
Length = 103
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%), Gaps = 2/52 (3%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV 52
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V
Sbjct: 25 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLV 76
>pdb|2HAN|A Chain A, Structural Basis Of Heterodimeric Ecdysteroid Receptor
Interaction With Natural Response Element Hsp27 Gene
Promoter
Length = 93
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV 52
+GFF+R+++K + Y C + C++ + RNRCQYCR++KCL GM R++V
Sbjct: 34 KGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAV 83
>pdb|1R0O|A Chain A, Crystal Structure Of The Heterodimeric Ecdysone Receptor
Dna-Binding Complex
Length = 86
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV 52
+GFF+R+++K + Y C + C++ + RNRCQYCR++KCL GM R++V
Sbjct: 32 KGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAV 81
>pdb|3KYT|A Chain A, Crystal Structure Of Orphan Nuclear Receptor Rorgamma In
Com Natural Ligand
pdb|3L0J|A Chain A, Crystal Structure Of Orphan Nuclear Receptor Rorgamma In
Com Natural Ligand
pdb|3B0W|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor
Ror(Gamma)t Ligand- Binding Domain In Complex With
Digoxin
pdb|3B0W|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor
Ror(Gamma)t Ligand- Binding Domain In Complex With
Digoxin
Length = 243
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 157 HESQRLW-LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR 215
++ + +W +W++ A H+T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ + + R
Sbjct: 44 YQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCR 103
Query: 216 -LTTDSSLTFSDGMY 229
D+ F +G Y
Sbjct: 104 AYNADNRTVFFEGKY 118
>pdb|1XDK|B Chain B, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
pdb|1XDK|F Chain F, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
Length = 303
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD- 219
L LW +F+ T + ++VEFAKR+PGF L+ DQ+ L+K ++ I + +R T +
Sbjct: 70 LGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQ 129
Query: 220 SSLTFSDGMYVTRQQL 235
++TFSDG+ + R Q+
Sbjct: 130 DTMTFSDGLTLNRTQM 145
>pdb|3L0L|A Chain A, Crystal Structure Of Orphan Nuclear Receptor Rorgamma In
Com Natural Ligand
pdb|3L0L|B Chain B, Crystal Structure Of Orphan Nuclear Receptor Rorgamma In
Com Natural Ligand
Length = 248
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 157 HESQRLW-LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR 215
++ + +W +W++ A H+T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ + + R
Sbjct: 49 YQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCR 108
Query: 216 -LTTDSSLTFSDGMY 229
D+ F +G Y
Sbjct: 109 AYNADNRTVFFEGKY 123
>pdb|1RXR|A Chain A, High Resolution Solution Structure Of The Retinoid X
Receptor Dna Binding Domain, Nmr, 20 Structure
Length = 83
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV 52
+GFF+R+++K + Y C + CL+ + RNRCQYCR++K LA+GM R++V
Sbjct: 27 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKALAMGMKREAV 76
>pdb|2EBL|A Chain A, Solution Structure Of The Zinc Finger, C4-type Domain Of
Human Coup Transcription Factor 1
Length = 89
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%)
Query: 5 FFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVP 58
FF+RS+++ + Y C + C + + +RN+CQYCR KKCL VGM R++V+ G P
Sbjct: 33 FFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGSGP 86
>pdb|1XAP|A Chain A, Structure Of The Ligand Binding Domain Of The Retinoic
Acid Receptor Beta
pdb|4DM6|A Chain A, Crystal Structure Of Rarb Lbd Homodimer In Complex With
Ttnpb
pdb|4DM6|B Chain B, Crystal Structure Of Rarb Lbd Homodimer In Complex With
Ttnpb
pdb|4DM8|A Chain A, Crystal Structure Of Rarb Lbd In Complex With 9cis
Retinoic Acid
pdb|4DM8|B Chain B, Crystal Structure Of Rarb Lbd In Complex With 9cis
Retinoic Acid
Length = 267
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD- 219
L LW +F+ T + ++VEFAKR+PGF L+ DQ+ L+K ++ I + +R T +
Sbjct: 68 LGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQ 127
Query: 220 SSLTFSDGMYVTRQQL 235
++TFSDG+ + R Q+
Sbjct: 128 DTMTFSDGLTLNRTQM 143
>pdb|2A66|A Chain A, Human Liver Receptor Homologue Dna-Binding Domain
(Hlrh-1 Dbd) In Complex With Dsdna From The Hcyp7a1
Promoter
Length = 113
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRV 57
+GFF+R++Q Y C+ + C + + R RC YCRF+KCL+VGM ++VR R+
Sbjct: 33 KGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRM 87
>pdb|2LBD|A Chain A, Ligand-Binding Domain Of The Human Retinoic Acid Receptor
Gamma Bound To All-Trans Retinoic Acid
pdb|3LBD|A Chain A, Ligand-binding Domain Of The Human Retinoic Acid Receptor
Gamma Bound To 9-cis Retinoic Acid
pdb|4LBD|A Chain A, Ligand-binding Domain Of The Human Retinoic Acid Receptor
Gamma Bound To The Synthetic Agonist Bms961
Length = 267
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD- 219
L LW +F+ T + ++VEFAKR+PGF LS DQ+ L+K + L + +R T +
Sbjct: 68 LGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQ 127
Query: 220 SSLTFSDGMYVTRQQL 235
++TFSDG+ + R Q+
Sbjct: 128 DTMTFSDGLTLNRTQM 143
>pdb|1FCY|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The RarbetaGAMMA-
Selective Retinoid Cd564
Length = 236
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD- 219
L LW +F+ T + ++VEFAKR+PGF LS DQ+ L+K + L + +R T +
Sbjct: 43 LGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQ 102
Query: 220 SSLTFSDGMYVTRQQL 235
++TFSDG+ + R Q+
Sbjct: 103 DTMTFSDGLTLNRTQM 118
>pdb|1FCX|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The Rargamma-Selective
Retinoid Bms184394
pdb|1FCZ|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The Panagonist Retinoid
Bms181156
pdb|1FD0|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The Rargamma-Selective
Retinoid Sr11254
Length = 235
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD- 219
L LW +F+ T + ++VEFAKR+PGF LS DQ+ L+K + L + +R T +
Sbjct: 42 LGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQ 101
Query: 220 SSLTFSDGMYVTRQQL 235
++TFSDG+ + R Q+
Sbjct: 102 DTMTFSDGLTLNRTQM 117
>pdb|1EXA|A Chain A, Enantiomer Discrimination Illustrated By Crystal
Structures Of The Human Retinoic Acid Receptor Hrargamma
Ligand Binding Domain: The Complex With The Active
R-Enantiomer Bms270394.
pdb|1EXX|A Chain A, Enantiomer Discrimination Illustrated By Crystal
Structures Of The Human Retinoic Acid Receptor Hrargamma
Ligand Binding Domain: The Complex With The Inactive
S-Enantiomer Bms270395
Length = 246
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD- 219
L LW +F+ T + ++VEFAKR+PGF LS DQ+ L+K + L + +R T +
Sbjct: 47 LGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQ 106
Query: 220 SSLTFSDGMYVTRQQL 235
++TFSDG+ + R Q+
Sbjct: 107 DTMTFSDGLTLNRTQM 122
>pdb|2NLL|A Chain A, Retinoid X Receptor-Thyroid Hormone Receptor Dna-Binding
Domain Heterodimer Bound To Thyroid Response Element
Dna
Length = 66
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 35/45 (77%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGM 47
+GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM
Sbjct: 22 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGM 66
>pdb|1N83|A Chain A, Crystal Structure Of The Complex Between The Orphan
Nuclear Hormone Receptor Ror(Alpha)-Lbd And Cholesterol
pdb|1S0X|A Chain A, Crystal Structure Of The Human Roralpha Ligand Binding
Domain In Complex With Cholesterol Sulfate At 2.2a
Length = 270
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 12/119 (10%)
Query: 114 VSQAHHSNCEYTEEGTRRLVRKXXXXXXXXXXXXXXXXXXXXCHESQRLWLWQQFAAHVT 173
+S++H C+Y E +++ + QR +WQ A +T
Sbjct: 27 ISKSHLETCQYLREELQQITWQTFLQEEIENY-----------QNKQREVMWQLCAIKIT 75
Query: 174 PSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSDGMYVT 231
++Q VVEFAKR+ GF +L Q+DQ++L+K G E ++I + ++ + DG Y +
Sbjct: 76 EAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYAS 134
>pdb|1NQ7|A Chain A, Characterization Of Ligands For The Orphan Nuclear
Receptor Rorbeta
Length = 244
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
LWQQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+
Sbjct: 51 LWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEV 95
>pdb|1N4H|A Chain A, Characterization Of Ligands For The Orphan Nuclear
Receptor Rorbeta
Length = 259
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
LWQQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+
Sbjct: 58 LWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEV 102
>pdb|1K4W|A Chain A, X-Ray Structure Of The Orphan Nuclear Receptor Ror Beta
Ligand-Binding Domain In The Active Conformation
Length = 252
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
LWQQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+
Sbjct: 58 LWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEV 102
>pdb|3CBB|A Chain A, Crystal Structure Of Hepatocyte Nuclear Factor 4alpha In
Complex With Dna: Diabetes Gene Product
pdb|3CBB|B Chain B, Crystal Structure Of Hepatocyte Nuclear Factor 4alpha In
Complex With Dna: Diabetes Gene Product
Length = 78
Score = 54.7 bits (130), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGR 56
+GFFRRS++K Y C +C+V + RN+C+YCR KKC GM +++V+ R
Sbjct: 24 KGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNER 77
>pdb|3A9E|B Chain B, Crystal Structure Of A Mixed Agonist-Bound Rar-Alpha And
Antagonist- Bound Rxr-Alpha Heterodimer Ligand Binding
Domains
Length = 269
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SS 221
LW +F+ T + + VEFAK++PGF L+ DQ+ L+K ++ I + +R T + +
Sbjct: 72 LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDT 131
Query: 222 LTFSDGMYVTRQQL 235
+TFSDG+ + R Q+
Sbjct: 132 MTFSDGLTLNRTQM 145
>pdb|2FF0|A Chain A, Solution Structure Of Steroidogenic Factor 1 Dna Binding
Domain Bound To Its Target Sequence In The Inhibin
Alpha- Subunit Promoter
Length = 102
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRV 57
+GFF+R++Q Y C C + + R RC +CRF+KCL VGM ++VR R+
Sbjct: 25 KGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRM 79
>pdb|1DKF|B Chain B, Crystal Structure Of A Heterodimeric Complex Of Rar And
Rxr Ligand-Binding Domains
Length = 235
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SS 221
LW +F+ T + + VEFAK++PGF L+ DQ+ L+K ++ I + +R T + +
Sbjct: 43 LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDT 102
Query: 222 LTFSDGMYVTRQQL 235
+TFSDG+ + R Q+
Sbjct: 103 MTFSDGLTLNRTQM 116
>pdb|3KMR|A Chain A, Crystal Structure Of Raralpha Ligand Binding Domain In
Complex With An Agonist Ligand (Am580) And A Coactivator
Fragment
pdb|3KMZ|B Chain B, Crystal Structure Of Raralpha Ligand Binding Domain In
Complex With The Inverse Agonist Bms493 And A
Corepressor Fragment
pdb|3KMZ|A Chain A, Crystal Structure Of Raralpha Ligand Binding Domain In
Complex With The Inverse Agonist Bms493 And A
Corepressor Fragment
Length = 266
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SS 221
LW +F+ T + + VEFAK++PGF L+ DQ+ L+K ++ I + +R T + +
Sbjct: 69 LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDT 128
Query: 222 LTFSDGMYVTRQQL 235
+TFSDG+ + R Q+
Sbjct: 129 MTFSDGLTLNRTQM 142
>pdb|4DQM|A Chain A, Revealing A Marine Natural Product As A Novel Agonist For
Retinoic Acid Receptors With A Unique Binding Mode And
Antitumor Activity
pdb|4DQM|C Chain C, Revealing A Marine Natural Product As A Novel Agonist For
Retinoic Acid Receptors With A Unique Binding Mode And
Antitumor Activity
Length = 234
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SS 221
LW +F+ T + + VEFAK++PGF L+ DQ+ L+K ++ I + +R T + +
Sbjct: 43 LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDT 102
Query: 222 LTFSDGMYVTRQQL 235
+TFSDG+ + R Q+
Sbjct: 103 MTFSDGLTLNRTQM 116
>pdb|1LO1|A Chain A, Estrogen Related Receptor 2 Dna Binding Domain In
Complex With Dna
Length = 98
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRV---PK 59
+ FF+R+IQ IEY C +C + + R CQ CRF K L VGM ++ VR RV +
Sbjct: 28 KAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKALKVGMLKEGVRLDRVRGGRQ 87
Query: 60 RSRERSDSET 69
+ + R DSE
Sbjct: 88 KYKRRLDSEN 97
>pdb|2J4A|A Chain A, Human Thyroid Hormone Receptor Beta Ligand Binding Domain
In Complex With Kb131084
Length = 253
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ F +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +L
Sbjct: 61 FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 120
Query: 223 TFSDGMYVTRQQLE 236
T S M VTR QL+
Sbjct: 121 TLSGEMAVTRGQLK 134
>pdb|1NUO|A Chain A, Two Rth Mutants With Impaired Hormone Binding
Length = 261
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVS-RLTTDS-SL 222
+ F +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + + R +S +L
Sbjct: 69 FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLHAAVRYDPESETL 128
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 129 TLNGEMAVTRGQLK 142
>pdb|3D57|A Chain A, Tr Variant D355r
pdb|3D57|B Chain B, Tr Variant D355r
Length = 266
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ F +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +L
Sbjct: 75 FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 134
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 135 TLNGEMAVTRGQLK 148
>pdb|1BSX|A Chain A, Structure And Specificity Of Nuclear Receptor-Coactivator
Interactions
pdb|1BSX|B Chain B, Structure And Specificity Of Nuclear Receptor-Coactivator
Interactions
Length = 260
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ F +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +L
Sbjct: 68 FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 127
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 128 TLNGEMAVTRGQLK 141
>pdb|1R6G|A Chain A, Crystal Structure Of The Thyroid Hormone Receptor Beta
Ligand Binding Domain In Complex With A Beta Selective
Compound
Length = 259
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ F +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +L
Sbjct: 67 FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 126
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 127 TLNGEMAVTRGQLK 140
>pdb|1NQ0|A Chain A, Tr Receptor Mutations Conferring Hormone Resistance And
Reduced Corepressor Release Exhibit Decreased Stability
In The Nterminal Lbd
Length = 263
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ F +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +L
Sbjct: 71 FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 130
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 131 TLNGEMAVTRGQLK 144
>pdb|2PIN|A Chain A, Thyroid Receptor Beta In Complex With Inhibitor
pdb|2PIN|B Chain B, Thyroid Receptor Beta In Complex With Inhibitor
Length = 253
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ F +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +L
Sbjct: 61 FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 120
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 121 TLNGEMAVTRGQLK 134
>pdb|1XZX|X Chain X, Thyroxine-Thyroid Hormone Receptor Interactions
pdb|1Y0X|X Chain X, Thyroxine-Thyroid Hormone Receptor Interactions
Length = 281
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ F +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +L
Sbjct: 89 FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 148
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 149 TLNGEMAVTRGQLK 162
>pdb|1N46|A Chain A, Crystal Structure Of Human Tr Beta Ligand-Binding Domain
Complexed With A Potent Subtype-Selective Thyromimetic
pdb|1N46|B Chain B, Crystal Structure Of Human Tr Beta Ligand-Binding Domain
Complexed With A Potent Subtype-Selective Thyromimetic
Length = 258
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ F +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +L
Sbjct: 66 FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 125
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 126 TLNGEMAVTRGQLK 139
>pdb|1NQ2|A Chain A, Two Rth Mutants With Impaired Hormone Binding
Length = 264
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ F +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +L
Sbjct: 72 FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRTAVRYEPESETL 131
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 132 TLNGEMAVTRGQLK 145
>pdb|1NAX|A Chain A, Thyroid Receptor Beta1 In Complex With A Beta-Selective
Ligand
Length = 252
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ F +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +L
Sbjct: 61 FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 120
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 121 TLNGEMAVTRGQLK 134
>pdb|1NQ1|A Chain A, Tr Receptor Mutations Conferring Hormone Resistance And
Reduced Corepressor Release Exhibit Decreased Stability
In The Nterminal Lbd
Length = 263
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ F +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +L
Sbjct: 71 FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 130
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 131 TLNGEMAVTRGQLK 144
>pdb|1Q4X|A Chain A, Crystal Structure Of Human Thyroid Hormone Receptor Beta
Lbd In Complex With Specific Agonist Gc-24
Length = 253
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ F +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +L
Sbjct: 61 FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 120
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 121 TLNGEMAVTRGQLK 134
>pdb|1YNW|A Chain A, Crystal Structure Of Vitamin D Receptor And 9-Cis
Retinoic Acid Receptor Dna-Binding Domains Bound To A
Dr3 Response Element
Length = 110
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS++++ + C +G C + + NR CQ CR K+C+ +GM ++ + +R R
Sbjct: 30 KGFFRRSMKRKALFTCAANGDCRITKDNRRACQACRLKRCVDIGMMKEFILTDEEVQRKR 89
Query: 63 E 63
E
Sbjct: 90 E 90
>pdb|1KB2|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To
Mouse Osteopontin (Spp) Response Element
pdb|1KB2|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To
Mouse Osteopontin (Spp) Response Element
pdb|1KB4|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To A
Canonical Direct Repeat With Three Base Pair Spacer
(Dr3) Response Element
pdb|1KB4|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To A
Canonical Direct Repeat With Three Base Pair Spacer
(Dr3) Response Element
pdb|1KB6|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To Rat
Osteocalcin (Oc) Response Element
pdb|1KB6|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To Rat
Osteocalcin (Oc) Response Element
Length = 110
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS++++ + C +G C + + NR CQ CR K+C+ +GM ++ + +R R
Sbjct: 30 KGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKR 89
Query: 63 E 63
E
Sbjct: 90 E 90
>pdb|3HZF|A Chain A, Structure Of Tr-alfa Bound To Selective Thyromimetic Gc-1
In C2 Space Group
Length = 269
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ +F +TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +L
Sbjct: 74 FSEFTKIITPAITRVVDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDPESDTL 133
Query: 223 TFSDGMYVTRQQLE 236
T S M V R+QL+
Sbjct: 134 TLSGEMAVKREQLK 147
>pdb|2H79|A Chain A, Crystal Structure Of Human Tr Alpha Bound T3 In
Orthorhombic Space Group
Length = 269
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ +F +TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +L
Sbjct: 74 FSEFTKIITPAITRVVDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDPESDTL 133
Query: 223 TFSDGMYVTRQQLE 236
T S M V R+QL+
Sbjct: 134 TLSGEMAVKREQLK 147
>pdb|3JZB|A Chain A, Crystal Structure Of Tr-Alfa Bound To The Selective
Thyromimetic Triac
pdb|3ILZ|A Chain A, Structure Of Tr-Alfa Bound To Selective Thyromimetic Gc-1
In Space Group
Length = 267
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ +F +TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +L
Sbjct: 72 FSEFTKIITPAITRVVDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDPESDTL 131
Query: 223 TFSDGMYVTRQQLE 236
T S M V R+QL+
Sbjct: 132 TLSGEMAVKREQLK 145
>pdb|3UVV|A Chain A, Crystal Structure Of The Ligand Binding Domains Of The
Thyroid Receptor:retinoid X Receptor Complexed With
3,3',5 Triiodo-L- Thyronine And 9-Cis Retinoic Acid
Length = 265
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ +F +TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +L
Sbjct: 70 FSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 129
Query: 223 TFSDGMYVTRQQLE 236
T S M V R+QL+
Sbjct: 130 TLSGEMAVKREQLK 143
>pdb|1NAV|A Chain A, Thyroid Receptor Alpha In Complex With An Agonist
Selective For Thyroid Receptor Beta1
Length = 263
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ +F +TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +L
Sbjct: 70 FSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTL 129
Query: 223 TFSDGMYVTRQQLE 236
T S M V R+QL+
Sbjct: 130 TLSGEMAVKREQLK 143
>pdb|1LAT|A Chain A, Glucocorticoid Receptor MutantDNA COMPLEX
pdb|1LAT|B Chain B, Glucocorticoid Receptor MutantDNA COMPLEX
Length = 82
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDS 51
+ FF+R+++ Q Y C +GKC++ ++ R C CR++KCL GM+ ++
Sbjct: 28 KAFFKRAVEGQHNYLCKYEGKCIIDKIRRKNCPACRYRKCLQAGMNLEA 76
>pdb|3JZC|A Chain A, Crystal Structure Of Tr-Beta Bound To The Selective
Thyromimetic Triac
Length = 263
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ F +TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +L
Sbjct: 71 FSHFTKIITPAITRVVDFAKKLPMFXELPXEDQIILLKGCCMEIMSLRAAVRYDPESETL 130
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 131 TLNGEMAVTRGQLK 144
>pdb|2H77|A Chain A, Crystal Structure Of Human Tr Alpha Bound T3 In Monoclinic
Space Group
Length = 269
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ +F +TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +L
Sbjct: 74 FSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTL 133
Query: 223 TFSDGMYVTRQQLE 236
T S M V R+QL+
Sbjct: 134 TLSGEMAVKREQLK 147
>pdb|4HN6|A Chain A, Gr Dna Binding Domain R460d/d462r - Tslp Ngre Complex
pdb|4HN6|B Chain B, Gr Dna Binding Domain R460d/d462r - Tslp Ngre Complex
Length = 114
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 5 FFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDS 51
FF+R+++ Q Y C D +C++ ++ R C CR++KCL GM+ ++
Sbjct: 52 FFKRAVEGQHNYLCAGDNRCIIDKIRRKNCPACRYRKCLQAGMNLEA 98
>pdb|1RJK|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 2md And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|1RK3|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 1,25-Dihydroxyvitamin D3
And A Synthetic Peptide Containing The Nr2 Box Of Drip
205
pdb|1RKG|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 2mbisp And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|1RKH|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 2am20r And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|2O4J|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Ligand Binding
Domain Complexed With Vitiii 17-20z And The Nr2 Box Of
Drip 205
pdb|2O4R|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Ligand Binding
Domain Complexed With Vitiii 17-20e And The Nr2 Box Of
Drip 205
Length = 292
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS 221
L + A V+ S+Q+V+ FAK +PGF DL+ DDQ++L+K E+ + L ++ S
Sbjct: 58 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIM-----LRSNQS 112
Query: 222 LTFSD 226
T D
Sbjct: 113 FTMDD 117
>pdb|2ZL9|A Chain A, 2-Substituted-16-Ene-22-Thia-1alpha,25-Dihydroxy-26,27-
Dimethyl-19-Norvitamin D3 Analogs: Synthesis, Biological
Evaluation And Crystal Structure
pdb|2ZLA|A Chain A, 2-Substituted-16-Ene-22-Thia-1alpha,25-Dihydroxy-26,27-
Dimethyl-19-Norvitamin D3 Analogs: Synthesis, Biological
Evaluation And Crystal Structure
pdb|2ZLC|A Chain A, 2-Substituted-16-Ene-22-Thia-1alpha,25-Dihydroxy-26,27-
Dimethyl-19-Norvitamin D3 Analogs: Synthesis, Biological
Evaluation And Crystal Structure
pdb|2ZMH|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Bound To
Adamantyl Vitamin D Analogs: Structural Basis For
Vitamin D Receptor Antagonism AndOR PARTIAL AGONISM
pdb|2ZMI|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Bound To
Adamantyl Vitamin D Analogs: Structural Basis For
Vitamin D Receptor Antagonism AndOR PARTIAL AGONISM
pdb|2ZMJ|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Bound To
Adamantyl Vitamin D Analogs: Structural Basis For
Vitamin D Receptor Antagonism AndOR PARTIAL AGONISM
pdb|2ZXM|A Chain A, A New Class Of Vitamin D Receptor Ligands That Induce
Structural Rearrangement Of The Ligand-Binding Pocket
pdb|2ZXN|A Chain A, A New Class Of Vitamin D Receptor Ligands That Induce
Structural Rearrangement Of The Ligand-Binding Pocket
pdb|3AFR|A Chain A, Crystal Structure Of
Vdr-Lbd22S-Butyl-1a,24r-Dihydroxyvitamin D3 Complex
pdb|3VJS|A Chain A, Vitamin D Receptor Complex With A Carborane Compound
pdb|3VJT|A Chain A, Vitamin D Receptor Complex With A Carborane Compound
pdb|3VRT|A Chain A, Vdr Ligand Binding Domain In Complex With
2-Mehylidene-19,25,26,27-
Tetranor-1alpha,24-Dihydroxyvitamind3
pdb|3VRU|A Chain A, Vdr Ligand Binding Domain In Complex With
2-Methylidene-19,24-Dinor- 1alpha,25-Dihydroxy Vitamind3
pdb|3VRV|A Chain A, Vdr Ligand Binding Domain In Complex With
2-Methylidene-26,27-
Dimethyl-19,24-Dinor-1alpha,25-Dihydroxyvitamin D3
pdb|3VRW|A Chain A, Vdr Ligand Binding Domain In Complex With
22s-Butyl-2-Methylidene-26,
27-Dimethyl-19,24-Dinor-1alpha,25-Dihydroxyvitamin D3
Length = 271
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS 221
L + A V+ S+Q+V+ FAK +PGF DL+ DDQ++L+K E+ + L ++ S
Sbjct: 68 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIM-----LRSNQS 122
Query: 222 LTFSD 226
T D
Sbjct: 123 FTMDD 127
>pdb|2ZFX|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With Yr301 And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|3A2H|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With Tei-9647 And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|3AUN|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With Yr335 And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
Length = 265
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS 221
L + A V+ S+Q+V+ FAK +PGF DL+ DDQ++L+K E+ + L ++ S
Sbjct: 62 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIM-----LRSNQS 116
Query: 222 LTFSD 226
T D
Sbjct: 117 FTMDD 121
>pdb|3P8X|A Chain A, Synthesis, Structure, And Biological Activity Of Des-Side
Chain Analogues Of 1alpha,25-Dihydroxyvitamin D3 With
Substituents At C-18
Length = 280
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 158 ESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLT 217
E +L + A V+ S+Q+V+ FAK +PGF DL+ +DQ++L+K E+ + L
Sbjct: 73 ELSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIM-----LR 127
Query: 218 TDSSLTFSD 226
++ S T D
Sbjct: 128 SNESFTMDD 136
>pdb|3GWS|X Chain X, Crystal Structure Of T3-Bound Thyroid Hormone Receptor
Length = 259
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ F +TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +L
Sbjct: 68 FSHFTKIITPAITRVVDFAKKLPMFXELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 127
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 128 TLNGEMAVTRGQLK 141
>pdb|3IMY|A Chain A, Structure Of Tr-Beta Bound To Selective Thyromimetic Gc-1
Length = 261
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ F +TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +L
Sbjct: 69 FSHFTKIITPAITRVVDFAKKLPMFXELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 128
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 129 TLNGEMAVTRGQLK 142
>pdb|3EYB|A Chain A, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|B Chain B, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|C Chain C, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|D Chain D, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
Length = 219
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTR 232
+VE+AKR+P F DL DDQ+IL++ G+ EL I S + D + + G++V R
Sbjct: 43 LVEWAKRIPHFSDLPIDDQVILLRAGWNELLIAAFSHRSIDVKDGILLASGLHVHR 98
>pdb|1S0Z|A Chain A, Crystal Structure Of The Vdr Lbd Complexed To Seocalcitol.
pdb|1S19|A Chain A, Crystal Structure Of Vdr Ligand Binding Domain Complexed
To Calcipotriol.
pdb|1TXI|A Chain A, Crystal Structure Of The Vdr Ligand Binding Domain
Complexed To Tx522
pdb|2HAM|A Chain A, Crystal Structure Of Vdr Lbd Complexed To 2alpha-Propyl-
Calcitriol
pdb|2HAR|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2 Alpha-(3-
Hydroxy-1-Propoxy) Calcitriol
pdb|2HAS|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2alpha-(1-
Propoxy) Calcitriol
pdb|2HB7|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2alpha(3-
Hydroxy-1-Propyl) Calcitriol
pdb|2HB8|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2alpha-Methyl
Calcitriol
pdb|3CS4|A Chain A, Structure-Based Design Of A Superagonist Ligand For The
Vitamin D Nuclear Receptor
pdb|3CS6|A Chain A, Structure-Based Design Of A Superagonist Ligand For The
Vitamin D Nuclear Receptor
pdb|3A3Z|X Chain X, Crystal Structure Of The Human Vdr Ligand Binding Domain
Bound To The Synthetic Agonist Compound 2alpha-Methyl-
Amcr277a(C23s)
pdb|3A40|X Chain X, Crystal Structure Of The Human Vdr Ligand Binding Domain
Bound To The Synthetic Agonist Compound 2alpha-Methyl-
Amcr277b(C23r)
pdb|3A78|A Chain A, Crystal Structure Of The Human Vdr Ligand Binding Domain
Bound To The Natural Metabolite
1alpha,25-Dihydroxy-3-Epi-Vitamin D3
pdb|3AUQ|A Chain A, Crystal Structure Of The Human Vitamin D Receptor Ligand
Binding Domain Complexed With Yne-Diene Type Analog Of
Active 14-Epi-2alpha- Methyl-19-Norvitamin D3
pdb|3AUR|A Chain A, Crystal Structure Of The Human Vitamin D Receptor Ligand
Binding Domain Complexed With Yne-Diene Type Analog Of
Active 14-Epi-2beta- Methyl-19-Norvitamin D3
pdb|3AX8|A Chain A, Crystal Structure Of The Human Vitamin D Receptor Ligand
Binding Domain Complexed With
15alpha-Methoxy-1alpha,25-Dihydroxyvitamin D3
Length = 263
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 158 ESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLT 217
E +L + A V+ S+Q+V+ FAK +PGF DL+ +DQ++L+K E+ + L
Sbjct: 56 ELSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIM-----LR 110
Query: 218 TDSSLTFSD 226
++ S T D
Sbjct: 111 SNESFTMDD 119
>pdb|1DB1|A Chain A, Crystal Structure Of The Nuclear Receptor For Vitamin D
Complexed To Vitamin D
pdb|1IE8|A Chain A, Crystal Structure Of The Nuclear Receptor For Vitamin D
Ligand Binding Domain Bound To Kh1060
pdb|1IE9|A Chain A, Crystal Structure Of The Nuclear Receptor For Vitamin D
Ligand Binding Domain Bound To Mc1288
pdb|3OGT|A Chain A, Design, Chemical Synthesis, Functional Characterization
And Crystal Structure Of The Sidechain Analogue Of
1,25-Dihydroxyvitamin D3.
pdb|3KPZ|A Chain A, Crystal Structure Of A Novel Vitamin D3 Analogue, Zk203278
Showing Dissociated Profile
pdb|3TKC|A Chain A, Design, Synthesis, Evaluation And Structure Of Vitamin D
Analogues With Furan Side Chains
pdb|4G2I|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
Length = 259
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 158 ESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLT 217
E +L + A V+ S+Q+V+ FAK +PGF DL+ +DQ++L+K E V L
Sbjct: 52 ELSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIE-----VIMLR 106
Query: 218 TDSSLTFSD 226
++ S T D
Sbjct: 107 SNESFTMDD 115
>pdb|3B0T|A Chain A, Human Vdr Ligand Binding Domain In Complex With
Maxacalcitol
Length = 254
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 158 ESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLT 217
E +L + A V+ S+Q+V+ FAK +PGF DL+ +DQ++L+K E V L
Sbjct: 51 ELSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIE-----VIMLR 105
Query: 218 TDSSLTFSD 226
++ S T D
Sbjct: 106 SNESFTMDD 114
>pdb|3A2I|A Chain A, Crystal Structure Of The Human Vitamin D Receptor (H305f)
Ligand Binding Domain Complexed With Tei-9647
Length = 263
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 158 ESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLT 217
E +L + A V+ S+Q+V+ FAK +PGF DL+ +DQ++L+K E V L
Sbjct: 56 ELSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIE-----VIMLR 110
Query: 218 TDSSLTFSD 226
++ S T D
Sbjct: 111 SNESFTMDD 119
>pdb|3AZ1|A Chain A, Crystal Structure Analysis Of Vitamin D Receptor
pdb|3AZ2|A Chain A, Crystal Structure Analysis Of Vitamin D Receptor
pdb|3AZ3|A Chain A, Crystal Structure Analysis Of Vitamin D Receptor
Length = 253
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 158 ESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLT 217
E +L + A V+ S+Q+V+ FAK +PGF DL+ +DQ++L+K E V L
Sbjct: 50 ELSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIE-----VIMLR 104
Query: 218 TDSSLTFSD 226
++ S T D
Sbjct: 105 SNESFTMDD 113
>pdb|3M7R|A Chain A, Crystal Structure Of Vdr H305q Mutant
Length = 253
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 158 ESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLT 217
E +L + A V+ S+Q+V+ FAK +PGF DL+ +DQ++L+K E V L
Sbjct: 50 ELSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIE-----VIMLR 104
Query: 218 TDSSLTFSD 226
++ S T D
Sbjct: 105 SNESFTMDD 113
>pdb|3A2J|A Chain A, Crystal Structure Of The Human Vitamin D Receptor
(H305fH397F) LIGAND Binding Domain Complexed With
Tei-9647
Length = 263
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 158 ESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLT 217
E +L + A V+ S+Q+V+ FAK +PGF DL+ +DQ++L+K E V L
Sbjct: 56 ELSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIE-----VIMLR 110
Query: 218 TDSSLTFSD 226
++ S T D
Sbjct: 111 SNESFTMDD 119
>pdb|2HAN|B Chain B, Structural Basis Of Heterodimeric Ecdysteroid Receptor
Interaction With Natural Response Element Hsp27 Gene
Promoter
Length = 119
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV 52
+GFFRRS+ K Y C C + R +CQ CR KKCLAVGM + V
Sbjct: 32 KGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECV 81
>pdb|1HCP|A Chain A, Dna Recognition By The Oestrogen Receptor: From Solution
To The Crystal
Length = 76
Score = 45.8 bits (107), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSR 49
+ FF+RSIQ +Y C +C + + R CQ CR +KC VGM +
Sbjct: 28 KAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMK 74
>pdb|1R0N|B Chain B, Crystal Structure Of Heterodimeric Ecdsyone Receptor Dna
Binding Complex
pdb|1R0O|B Chain B, Crystal Structure Of The Heterodimeric Ecdysone Receptor
Dna-Binding Complex
Length = 109
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV 52
+GFFRRS+ K Y C C + R +CQ CR KKCLAVGM + V
Sbjct: 30 KGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECV 79
>pdb|4AA6|A Chain A, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
pdb|4AA6|B Chain B, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
pdb|4AA6|F Chain F, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
Length = 71
Score = 45.4 bits (106), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSR 49
+ FF+RSIQ +Y C +C + + R CQ CR +KC VGM +
Sbjct: 25 KAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMK 71
>pdb|4AA6|E Chain E, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
Length = 71
Score = 45.4 bits (106), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSR 49
+ FF+RSIQ +Y C +C + + R CQ CR +KC VGM +
Sbjct: 25 KAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMK 71
>pdb|1GDC|A Chain A, Refined Solution Structure Of The Glucocorticoid
Receptor Dna-Binding Domain
Length = 72
Score = 45.1 bits (105), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 5 FFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDS 51
FF+R+++ Q Y C C++ ++ R C CR++KCL GM+ ++
Sbjct: 25 FFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEA 71
>pdb|2ZVT|A Chain A, Cys285ser Mutant Ppargamma Ligand-Binding Domain Complexed
With 15-Deoxy-Delta12,14-Prostaglandin J2
pdb|2ZVT|B Chain B, Cys285ser Mutant Ppargamma Ligand-Binding Domain Complexed
With 15-Deoxy-Delta12,14-Prostaglandin J2
Length = 286
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 161 RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDS 220
R++ QF + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L
Sbjct: 90 RIFQGSQFRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKD 147
Query: 221 SLTFSDGM-YVTRQQLE 236
+ S+G ++TR+ L+
Sbjct: 148 GVLISEGQGFMTREFLK 164
>pdb|2HBH|A Chain A, Crystal Structure Of Vitamin D Nuclear Receptor Ligand
Binding Domain Bound To A Locked Side-Chain Analog Of
Calcitriol And Src-1 Peptide
pdb|2HC4|A Chain A, Crystal Structure Of The Lbd Of Vdr Of Danio Rerio In
Complex With Calcitriol
pdb|2HCD|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Vitamin D Nuclear Receptor In Complex With Gemini And A
Coactivator Peptide
pdb|3DR1|A Chain A, Side-Chain Fluorine Atoms Of Non-Steroidal Vitamin D3
Analogs Stabilize Helix 12 Of Vitamin D Receptor
pdb|3O1D|A Chain A, Structure-Function Study Of Gemini Derivatives With Two
Different Side Chains At C-20, Gemini-0072 And
Gemini-0097.
pdb|3O1E|A Chain A, Structure-Function Of Gemini Derivatives With Two
Different Side Chains At C-20, Gemini-0072 And
Gemini-0097
Length = 302
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 161 RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
RL + A V+ S+Q+V+ FAK +PGF DL+ +DQ+ L+K E+ +
Sbjct: 100 RLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIALLKSSAIEIIM 149
>pdb|3ET0|A Chain A, Structure Of Ppargamma With 3-(5-Methoxy-1h-Indol-3-Yl)-
Propionic Acid
pdb|3ET0|B Chain B, Structure Of Ppargamma With 3-(5-Methoxy-1h-Indol-3-Yl)-
Propionic Acid
Length = 292
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 161 RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDS 220
R++ QF + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L
Sbjct: 95 RIFQGXQFRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKD 152
Query: 221 SLTFSDGM-YVTRQQLE 236
+ S+G ++TR+ L+
Sbjct: 153 GVLISEGQGFMTREFLK 169
>pdb|3BC5|A Chain A, X-Ray Crystal Structure Of Human Ppar Gamma With
2-(5-(3-(2-
(5-Methyl-2-Phenyloxazol-4-Yl)ethoxy)benzyl)-2-Phenyl-
2h-1, 2,3-Triazol-4-Yl)acetic Acid
Length = 296
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 111 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 170
Query: 234 QLE 236
L+
Sbjct: 171 FLK 173
>pdb|4FHH|A Chain A, Development Of Synthetically Accessible Non-Secosteroidal
Hybrid Molecules Combining Vitamin D Receptor Agonism
And Histone Deacetylase Inhibition
pdb|4FHI|A Chain A, Development Of Synthetically Accessible Non-Secosteroidal
Hybrid Molecules Combining Vitamin D Receptor Agonism
And Histone Deacetylase Inhibition
pdb|4G1D|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G1Y|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G1Z|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G20|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G21|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G2H|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
Length = 300
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 161 RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
RL + A V+ S+Q+V+ FAK +PGF DL+ +DQ+ L+K E+ +
Sbjct: 98 RLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIALLKSSAIEIIM 147
>pdb|1I7I|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma In Complex With The Agonist Az 242
pdb|1I7I|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma In Complex With The Agonist Az 242
Length = 292
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 107 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 166
Query: 234 QLE 236
L+
Sbjct: 167 FLK 169
>pdb|2VSR|A Chain A, Hppargamma Ligand Binding Domain In Complex With
9-(S)-Hode
pdb|2VSR|B Chain B, Hppargamma Ligand Binding Domain In Complex With
9-(S)-Hode
pdb|2VST|A Chain A, Hppargamma Ligand Binding Domain In Complex With 13-(S)-
Hode
pdb|2VST|B Chain B, Hppargamma Ligand Binding Domain In Complex With 13-(S)-
Hode
pdb|2VV0|A Chain A, Hppargamma Ligand Binding Domain In Complex With Dha
pdb|2VV0|B Chain B, Hppargamma Ligand Binding Domain In Complex With Dha
pdb|2VV1|A Chain A, Hppargamma Ligand Binding Domain In Complex With 4-Hdha
pdb|2VV2|A Chain A, Hppargamma Ligand Binding Domain In Complex With 5-Hepa
pdb|2VV2|B Chain B, Hppargamma Ligand Binding Domain In Complex With 5-Hepa
pdb|2VV3|A Chain A, Hppargamma Ligand Binding Domain In Complex With 4-Oxodha
pdb|2VV3|B Chain B, Hppargamma Ligand Binding Domain In Complex With 4-Oxodha
pdb|2VV4|A Chain A, Hppargamma Ligand Binding Domain In Complex With 6-Oxoote
Length = 276
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 91 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 150
Query: 234 QLE 236
L+
Sbjct: 151 FLK 153
>pdb|2Q59|A Chain A, Crystal Structure Of Ppargamma Lbd Bound To Full Agonist
Mrl20
Length = 274
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 161 RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDS 220
R++ QF + +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L
Sbjct: 77 RIFQGXQFRS--VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKD 134
Query: 221 SLTFSDGM-YVTRQQLE 236
+ S+G ++TR+ L+
Sbjct: 135 GVLISEGQGFMTREFLK 151
>pdb|2OM9|A Chain A, Ajulemic Acid, A Synthetic Cannabinoid Bound To Ppar Gamma
pdb|2OM9|B Chain B, Ajulemic Acid, A Synthetic Cannabinoid Bound To Ppar Gamma
pdb|2OM9|C Chain C, Ajulemic Acid, A Synthetic Cannabinoid Bound To Ppar Gamma
pdb|2OM9|D Chain D, Ajulemic Acid, A Synthetic Cannabinoid Bound To Ppar Gamma
pdb|3SZ1|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With
Luteolin And Myristic Acid
pdb|3SZ1|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With
Luteolin And Myristic Acid
Length = 278
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 93 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 152
Query: 234 QLE 236
L+
Sbjct: 153 FLK 155
>pdb|3PRG|A Chain A, Ligand Binding Domain Of Human Peroxisome Proliferator
Activated Receptor
Length = 278
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 93 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 152
Query: 234 QLE 236
L+
Sbjct: 153 FLK 155
>pdb|1RDT|D Chain D, Crystal Structure Of A New Rexinoid Bound To The Rxralpha
Ligand Binding Doamin In The RxralphaPPARGAMMA
HETERODIMER
Length = 284
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 99 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 158
Query: 234 QLE 236
L+
Sbjct: 159 FLK 161
>pdb|2VV1|B Chain B, Hppargamma Ligand Binding Domain In Complex With 4-Hdha
Length = 276
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 91 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 150
Query: 234 QLE 236
L+
Sbjct: 151 FLK 153
>pdb|3S9S|A Chain A, Ligand Binding Domain Of Ppargamma Complexed With A
Benzimidazole Partial Agonist
Length = 284
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 99 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 158
Query: 234 QLE 236
L+
Sbjct: 159 FLK 161
>pdb|2VV4|B Chain B, Hppargamma Ligand Binding Domain In Complex With 6-Oxoote
Length = 276
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 91 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 150
Query: 234 QLE 236
L+
Sbjct: 151 FLK 153
>pdb|3B0Q|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With
Mcc555
pdb|3B0Q|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With
Mcc555
pdb|3B0R|A Chain A, Human Ppar Gamma Ligand Binding Dmain Complexed With
Gw9662 In A Covalent Bonded Form
pdb|3B0R|B Chain B, Human Ppar Gamma Ligand Binding Dmain Complexed With
Gw9662 In A Covalent Bonded Form
Length = 274
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 90 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 149
Query: 234 QLE 236
L+
Sbjct: 150 FLK 152
>pdb|2Q59|B Chain B, Crystal Structure Of Ppargamma Lbd Bound To Full Agonist
Mrl20
pdb|2Q5P|A Chain A, Crystal Structure Of Ppargamma Bound To Partial Agonist
Mrl24
pdb|2Q5P|B Chain B, Crystal Structure Of Ppargamma Bound To Partial Agonist
Mrl24
pdb|2Q5S|A Chain A, Crystal Structure Of Ppargamma Bound To Partial Agonist
Ntzdpa
pdb|2Q5S|B Chain B, Crystal Structure Of Ppargamma Bound To Partial Agonist
Ntzdpa
pdb|2Q61|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain Bound
To Partial Agonist Sr145
pdb|2Q61|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain Bound
To Partial Agonist Sr145
pdb|2Q6R|A Chain A, Crystal Structure Of Ppar Gamma Complexed With Partial
Agonist Sf147
pdb|2Q6R|B Chain B, Crystal Structure Of Ppar Gamma Complexed With Partial
Agonist Sf147
pdb|2Q6S|A Chain A, 2.4 Angstrom Crystal Structure Of Ppar Gamma Complexed To
Bvt.13 Without Co-Activator Peptides
pdb|2Q6S|B Chain B, 2.4 Angstrom Crystal Structure Of Ppar Gamma Complexed To
Bvt.13 Without Co-Activator Peptides
Length = 274
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 89 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 148
Query: 234 QLE 236
L+
Sbjct: 149 FLK 151
>pdb|2I4J|A Chain A, Crystal Structure Of The Complex Between Ppargamma And The
Agonist Lt160 (Ureidofibrate Derivative)
pdb|2I4J|B Chain B, Crystal Structure Of The Complex Between Ppargamma And The
Agonist Lt160 (Ureidofibrate Derivative)
pdb|2I4P|A Chain A, Crystal Structure Of The Complex Between Ppargamma And The
Partial Agonist Lt127 (Ureidofibrate Derivative).
Structure Obtained From Crystals Of The Apo-Form Soaked
For 30 Days.
pdb|2I4P|B Chain B, Crystal Structure Of The Complex Between Ppargamma And The
Partial Agonist Lt127 (Ureidofibrate Derivative).
Structure Obtained From Crystals Of The Apo-Form Soaked
For 30 Days.
pdb|2I4Z|A Chain A, Crystal Structure Of The Complex Between Ppargamma And The
Partial Agonist Lt127 (Ureidofibrate Derivative). This
Structure Has Been Obtained From Crystals Soaked For 6
Hours.
pdb|2I4Z|B Chain B, Crystal Structure Of The Complex Between Ppargamma And The
Partial Agonist Lt127 (Ureidofibrate Derivative). This
Structure Has Been Obtained From Crystals Soaked For 6
Hours.
pdb|3B3K|A Chain A, Crystal Structure Of The Complex Between Ppargamma And The
Full Agonist Lt175
pdb|3B3K|B Chain B, Crystal Structure Of The Complex Between Ppargamma And The
Full Agonist Lt175
pdb|3CDS|A Chain A, Crystal Structure Of The Complex Between Ppar-Gamma And
The Agonist Lt248 (Clofibric Acid Analogue)
pdb|3CDS|B Chain B, Crystal Structure Of The Complex Between Ppar-Gamma And
The Agonist Lt248 (Clofibric Acid Analogue)
pdb|3D6D|A Chain A, Crystal Structure Of The Complex Between Ppargamma Lbd And
The Lt175(R-Enantiomer)
pdb|3D6D|B Chain B, Crystal Structure Of The Complex Between Ppargamma Lbd And
The Lt175(R-Enantiomer)
pdb|3CDP|A Chain A, Crystal Structure Of Ppar-Gamma Lbd Complexed With A
Partial Agonist, Analogue Of Clofibric Acid
pdb|3CDP|B Chain B, Crystal Structure Of Ppar-Gamma Lbd Complexed With A
Partial Agonist, Analogue Of Clofibric Acid
pdb|2ZK0|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain
pdb|2ZK0|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain
pdb|2ZK1|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With
15-Deoxy-Delta12,14- Prostaglandin J2
pdb|2ZK1|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With
15-Deoxy-Delta12,14- Prostaglandin J2
pdb|2ZK2|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With Glutathion
Conjugated 15-Deoxy-Delta12,14-Prostaglandin J2
pdb|2ZK2|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With Glutathion
Conjugated 15-Deoxy-Delta12,14-Prostaglandin J2
pdb|2ZK3|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With 8-Oxo-
Eicosatetraenoic Acid
pdb|2ZK3|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With 8-Oxo-
Eicosatetraenoic Acid
pdb|2ZK4|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With 15-Oxo-
Eicosatetraenoic Acid
pdb|2ZK4|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With 15-Oxo-
Eicosatetraenoic Acid
pdb|2ZK5|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With Nitro-233
pdb|2ZK5|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With Nitro-233
pdb|2ZK6|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With C8-Bodipy
pdb|2ZK6|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With C8-Bodipy
pdb|2ZNO|A Chain A, Human Pprr Gamma Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp703
pdb|2ZNO|B Chain B, Human Pprr Gamma Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp703
pdb|3HO0|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
New Aryloxy-3phenylpropanoic Acid
pdb|3HO0|B Chain B, Crystal Structure Of The Ppargamma-Lbd Complexed With A
New Aryloxy-3phenylpropanoic Acid
pdb|3HOD|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
New Aryloxy-3phenylpropanoic Acid
pdb|3HOD|B Chain B, Crystal Structure Of The Ppargamma-Lbd Complexed With A
New Aryloxy-3phenylpropanoic Acid
pdb|3AN3|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With A
Gamma Selective Agonist Mo3s
pdb|3AN3|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With A
Gamma Selective Agonist Mo3s
pdb|3AN4|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With A
Gamma Selective Agonist Mo4r
pdb|3AN4|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With A
Gamma Selective Agonist Mo4r
pdb|3VJH|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With
Jkpl35
pdb|3VJH|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With
Jkpl35
pdb|3VJI|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With
Jkpl53
pdb|3VJI|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With
Jkpl53
Length = 286
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 102 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 161
Query: 234 QLE 236
L+
Sbjct: 162 FLK 164
>pdb|1ZEO|A Chain A, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complexed With An Alpha-Aryloxyphenylacetic Acid
Agonist
pdb|1ZEO|B Chain B, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complexed With An Alpha-Aryloxyphenylacetic Acid
Agonist
pdb|2P4Y|A Chain A, Crystal Structure Of Human Ppar-Gamma-Ligand Binding
Domain Complexed With An Indole-Based Modulator
pdb|2P4Y|B Chain B, Crystal Structure Of Human Ppar-Gamma-Ligand Binding
Domain Complexed With An Indole-Based Modulator
pdb|3TY0|A Chain A, Structure Of Ppargamma Ligand Binding Domain In Complex
With (R)-5-(3-
((3-(6-Methoxybenzo[d]isoxazol-3-Yl)-2-Oxo-2,
3-Dihydro-1h-
Benzo[d]imidazol-1-Yl)methyl)phenyl)-5-
Methyloxazolidine-2,4-Dione
pdb|3TY0|B Chain B, Structure Of Ppargamma Ligand Binding Domain In Complex
With (R)-5-(3-
((3-(6-Methoxybenzo[d]isoxazol-3-Yl)-2-Oxo-2,
3-Dihydro-1h-
Benzo[d]imidazol-1-Yl)methyl)phenyl)-5-
Methyloxazolidine-2,4-Dione
Length = 277
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 92 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 151
Query: 234 QLE 236
L+
Sbjct: 152 FLK 154
>pdb|1KNU|A Chain A, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma In Complex With A Synthetic
Agonist
pdb|1KNU|B Chain B, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma In Complex With A Synthetic
Agonist
pdb|2XKW|A Chain A, Ligand Binding Domain Of Human Ppar-Gamma In Complex With
The Agonist Pioglitazone
pdb|2XKW|B Chain B, Ligand Binding Domain Of Human Ppar-Gamma In Complex With
The Agonist Pioglitazone
pdb|3R5N|A Chain A, Crystal Structure Of Ppargammalbd Complexed With The
Agonist Magnolol
Length = 274
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 89 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 148
Query: 234 QLE 236
L+
Sbjct: 149 FLK 151
>pdb|3ADS|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
Indomethacin
pdb|3ADS|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
Indomethacin
pdb|3ADT|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
5-Hydroxy-Indole Acetate
pdb|3ADT|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
5-Hydroxy-Indole Acetate
pdb|3ADU|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
5-Methoxy-Indole Acetate
pdb|3ADU|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
5-Methoxy-Indole Acetate
pdb|3ADV|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
Serotonin
pdb|3ADV|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
Serotonin
pdb|3ADW|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
5-Methoxy-Indole Acetate And 15-Oxo-Eicosatetraenoic
Acid
pdb|3ADW|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
5-Methoxy-Indole Acetate And 15-Oxo-Eicosatetraenoic
Acid
pdb|3ADX|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
Indomethacin And Nitro-233
pdb|3ADX|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
Indomethacin And Nitro-233
pdb|3R8I|A Chain A, Crystal Structure Of Ppargamma With An Achiral
Ureidofibrate Derivative (Rt86)
pdb|3R8I|B Chain B, Crystal Structure Of Ppargamma With An Achiral
Ureidofibrate Derivative (Rt86)
pdb|2YFE|A Chain A, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 1
pdb|2YFE|B Chain B, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 1
pdb|4A4V|A Chain A, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 2
pdb|4A4V|B Chain B, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 2
pdb|4A4W|A Chain A, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 2
pdb|4A4W|B Chain B, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 2
pdb|4E4K|A Chain A, Crystal Structure Of Ppargamma With The Ligand Jo21
pdb|4E4K|B Chain B, Crystal Structure Of Ppargamma With The Ligand Jo21
pdb|4E4Q|A Chain A, Crystal Structure Of Ppargamma With The Ligand Fs214
pdb|4E4Q|B Chain B, Crystal Structure Of Ppargamma With The Ligand Fs214
Length = 287
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 102 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 161
Query: 234 QLE 236
L+
Sbjct: 162 FLK 164
>pdb|1WM0|X Chain X, Ppargamma In Complex With A 2-Baba Compound
Length = 292
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 107 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 166
Query: 234 QLE 236
L+
Sbjct: 167 FLK 169
>pdb|1PDU|A Chain A, Ligand-Binding Domain Of Drosophila Orphan Nuclear
Receptor Dhr38
pdb|1PDU|B Chain B, Ligand-Binding Domain Of Drosophila Orphan Nuclear
Receptor Dhr38
Length = 244
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF +T SV + +FA+++PG+ DL +DQ +L + EL++ Y +R+ D+ L
Sbjct: 50 QQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRARI-DDTKL 108
Query: 223 TFSDGMYVTRQQ 234
F +G + R Q
Sbjct: 109 IFCNGTVLHRTQ 120
>pdb|1K74|D Chain D, The 2.3 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Ppargamma And Rxralpha Ligand
Binding Domains Respectively Bound With Gw409544 And
9-Cis Retinoic Acid And Co-Activator Peptides
Length = 283
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 98 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 157
Query: 234 QLE 236
L+
Sbjct: 158 FLK 160
>pdb|2GDA|A Chain A, Refined Solution Structure Of The Glucocorticoid
Receptor Dna-Binding Domain
Length = 72
Score = 45.1 bits (105), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 5 FFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDS 51
FF+R+++ Q Y C C++ ++ R C CR++KCL GM+ ++
Sbjct: 25 FFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEA 71
>pdb|1HCQ|A Chain A, The Crystal Structure Of The Estrogen Receptor
Dna-Binding Domain Bound To Dna: How Receptors
Discriminate Between Their Response Elements
pdb|1HCQ|B Chain B, The Crystal Structure Of The Estrogen Receptor
Dna-Binding Domain Bound To Dna: How Receptors
Discriminate Between Their Response Elements
pdb|1HCQ|E Chain E, The Crystal Structure Of The Estrogen Receptor
Dna-Binding Domain Bound To Dna: How Receptors
Discriminate Between Their Response Elements
pdb|1HCQ|F Chain F, The Crystal Structure Of The Estrogen Receptor
Dna-Binding Domain Bound To Dna: How Receptors
Discriminate Between Their Response Elements
Length = 84
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVR 53
+ FF+RSIQ +Y C +C + + R CQ CR +KC VGM + +R
Sbjct: 28 KAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIR 78
>pdb|3ET3|A Chain A, Structure Of Ppargamma With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
Length = 292
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 107 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 166
Query: 234 QLE 236
L+
Sbjct: 167 FLK 169
>pdb|3LMP|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
pdb|3B1M|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator Cerco-A
pdb|3V9T|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
pdb|3V9V|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
pdb|3V9Y|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
pdb|4F9M|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
Length = 283
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 98 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 157
Query: 234 QLE 236
L+
Sbjct: 158 FLK 160
>pdb|2PRG|A Chain A, Ligand-Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma
pdb|2PRG|B Chain B, Ligand-Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma
pdb|2F4B|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma In Complex With An Agonist
pdb|2F4B|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma In Complex With An Agonist
pdb|2FVJ|A Chain A, A Novel Anti-adipogenic Partial Agonist Of Peroxisome
Proliferator- Activated Receptor-gamma (pparg) Recruits
Pparg-coactivator-1 Alpha (pgc1a) But Potentiates
Insulin Signaling In Vitro
pdb|2G0G|A Chain A, Structure-based Drug Design Of A Novel Family Of Ppar
Partial Agonists: Virtual Screening, X-ray
Crystallography And In Vitro/in Vivo Biological
Activities
pdb|2G0G|B Chain B, Structure-based Drug Design Of A Novel Family Of Ppar
Partial Agonists: Virtual Screening, X-ray
Crystallography And In Vitro/in Vivo Biological
Activities
pdb|2G0H|A Chain A, Structure-Based Drug Design Of A Novel Family Of Ppar
Partial Agonists: Virtual Screening, X-Ray
Crystallography And In VitroIN VIVO BIOLOGICAL
ACTIVITIES
pdb|2G0H|B Chain B, Structure-Based Drug Design Of A Novel Family Of Ppar
Partial Agonists: Virtual Screening, X-Ray
Crystallography And In VitroIN VIVO BIOLOGICAL
ACTIVITIES
pdb|2ATH|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma Im Complex With An Agonist
pdb|2ATH|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma Im Complex With An Agonist
pdb|2GTK|A Chain A, Structure-Based Design Of Indole Propionic Acids As Novel
Pparag Co-Agonists
pdb|2HWQ|A Chain A, Structural Basis For The Structure-Activity Relationships
Of Peroxisome Proliferator-Activated Receptor Agonists
pdb|2HWQ|B Chain B, Structural Basis For The Structure-Activity Relationships
Of Peroxisome Proliferator-Activated Receptor Agonists
pdb|2HWR|A Chain A, Structural Basis For The Structure-Activity Relationships
Of Peroxisome Proliferator-Activated Receptor Agonists
pdb|2HWR|B Chain B, Structural Basis For The Structure-Activity Relationships
Of Peroxisome Proliferator-Activated Receptor Agonists
pdb|2Q8S|A Chain A, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Ppar GammaALPHA DUAL
AGONIST
pdb|2Q8S|B Chain B, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Ppar GammaALPHA DUAL
AGONIST
pdb|3G9E|A Chain A, Aleglitaar. A New. Potent, And Balanced Dual PparaG
AGONIST For The Treatment Of Type Ii Diabetes
pdb|3IA6|A Chain A, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Ppar GammaALPHA DUAL
Agonist
pdb|3IA6|B Chain B, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Ppar GammaALPHA DUAL
Agonist
pdb|3FEJ|A Chain A, Design And Biological Evaluation Of Novel, Balanced Dual
PparaG AGONISTS
pdb|3GBK|A Chain A, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complexed With A Potent And Selective Agonist
pdb|3GBK|B Chain B, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complexed With A Potent And Selective Agonist
pdb|3NOA|A Chain A, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complex With A Potency Improved Agonist
pdb|3NOA|B Chain B, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complex With A Potency Improved Agonist
pdb|3QT0|A Chain A, Revealing A Steroid Receptor Ligand As A Unique Ppargamma
Agonist
Length = 271
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 86 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 145
Query: 234 QLE 236
L+
Sbjct: 146 FLK 148
>pdb|1FM6|D Chain D, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM6|X Chain X, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM9|D Chain D, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Gi262570 And Co-Activator Peptides.
pdb|1ZGY|A Chain A, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
pdb|2POB|A Chain A, Ppargamma Ligand Binding Domain Complexed With A
Farglitazar Analogue Gw4709
pdb|2POB|B Chain B, Ppargamma Ligand Binding Domain Complexed With A
Farglitazar Analogue Gw4709
pdb|3FUR|A Chain A, Crystal Structure Of Pparg In Complex With Int131
pdb|3H0A|D Chain D, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Gamma (Pparg) And Retinoic Acid Receptor Alpha
(Rxra) In Complex With 9-Cis Retinoic Acid, Co-Activator
Peptide, And A Partial Agonist
pdb|3K8S|A Chain A, Crystal Structure Of Pparg In Complex With T2384
pdb|3K8S|B Chain B, Crystal Structure Of Pparg In Complex With T2384
pdb|3KMG|A Chain A, The X-Ray Crystal Structure Of Ppar-Gamma In Complex With
An Indole Derivative Modulator, Gsk538, And An Src-1
Peptide
pdb|3KMG|D Chain D, The X-Ray Crystal Structure Of Ppar-Gamma In Complex With
An Indole Derivative Modulator, Gsk538, And An Src-1
Peptide
Length = 272
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 87 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 146
Query: 234 QLE 236
L+
Sbjct: 147 FLK 149
>pdb|1NYX|A Chain A, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma In Complex With An Agonist
pdb|1NYX|B Chain B, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma In Complex With An Agonist
Length = 276
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 91 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 150
Query: 234 QLE 236
L+
Sbjct: 151 FLK 153
>pdb|4PRG|A Chain A, 0072 Partial Agonist Ppar Gamma Cocrystal
pdb|4PRG|B Chain B, 0072 Partial Agonist Ppar Gamma Cocrystal
pdb|4PRG|C Chain C, 0072 Partial Agonist Ppar Gamma Cocrystal
pdb|4PRG|D Chain D, 0072 Partial Agonist Ppar Gamma Cocrystal
pdb|1PRG|A Chain A, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma
pdb|1PRG|B Chain B, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma
pdb|2QMV|A Chain A, High Resolution Structure Of Peroxisone
Proliferation-Activated Receptor Gamma And
Characterisation Of Its Interaction With The Co-
Activator Transcriptional Intermediary Factor 2
Length = 270
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 86 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 145
Query: 234 QLE 236
L+
Sbjct: 146 FLK 148
>pdb|3R8A|A Chain A, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Compound With Dual Ppar
Gamma Agonism And Angiotensin Ii Type I Receptor
Antagonism Activity
pdb|3R8A|B Chain B, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Compound With Dual Ppar
Gamma Agonism And Angiotensin Ii Type I Receptor
Antagonism Activity
Length = 282
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 97 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 156
Query: 234 QLE 236
L+
Sbjct: 157 FLK 159
>pdb|3PBA|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Monosulfate Tetrabromo-Bisphenol A
(Monotbbpa)
pdb|3PBA|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Monosulfate Tetrabromo-Bisphenol A
(Monotbbpa)
pdb|3PO9|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tripropyltin
pdb|3PO9|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tripropyltin
Length = 286
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 101 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 160
Query: 234 QLE 236
L+
Sbjct: 161 FLK 163
>pdb|3CS8|A Chain A, Structural And Biochemical Basis For The Binding
Selectivity Of Pparg To Pgc-1a
Length = 275
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 91 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 150
Query: 234 QLE 236
L+
Sbjct: 151 FLK 153
>pdb|2HFP|A Chain A, Crystal Structure Of Ppar Gamma With N-Sulfonyl-2-Indole
Carboxamide Ligands
Length = 282
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 97 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 156
Query: 234 QLE 236
L+
Sbjct: 157 FLK 159
>pdb|3T03|A Chain A, Crystal Structure Of Ppar Gamma Ligand Binding Domain In
Complex With A Novel Partial Agonist Gq-16
pdb|3T03|B Chain B, Crystal Structure Of Ppar Gamma Ligand Binding Domain In
Complex With A Novel Partial Agonist Gq-16
Length = 284
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 99 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 158
Query: 234 QLE 236
L+
Sbjct: 159 FLK 161
>pdb|3OSI|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tetrachloro-Bisphenol A (Tcbpa)
pdb|3OSI|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tetrachloro-Bisphenol A (Tcbpa)
pdb|3OSW|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tetrabromo-Bisphenol A (Tbbpa)
pdb|3OSW|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tetrabromo-Bisphenol A (Tbbpa)
Length = 285
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 101 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 160
Query: 234 QLE 236
L+
Sbjct: 161 FLK 163
>pdb|3U9Q|A Chain A, Ligand Binding Domain Of Ppargamma Complexed With Decanoic
Acid And Pgc-1a Peptide
Length = 269
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 85 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 144
Query: 234 QLE 236
L+
Sbjct: 145 FLK 147
>pdb|3VN2|A Chain A, Crystal Structure Of Ppargamma Complexed With Telmisartan
Length = 285
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 100 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 159
Query: 234 QLE 236
L+
Sbjct: 160 FLK 162
>pdb|3CWD|A Chain A, Molecular Recognition Of Nitro-Fatty Acids By Ppar Gamma
pdb|3CWD|B Chain B, Molecular Recognition Of Nitro-Fatty Acids By Ppar Gamma
Length = 270
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 85 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 144
Query: 234 QLE 236
L+
Sbjct: 145 FLK 147
>pdb|1RGD|A Chain A, Structure Refinement Of The Glucocorticoid Receptor-Dna
Binding Domain From Nmr Data By Relaxation Matrix
Calculations
Length = 71
Score = 44.7 bits (104), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 5 FFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDS 51
FF+R+++ Q Y C C++ ++ R C CR++KCL GM+ ++
Sbjct: 24 FFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEA 70
>pdb|1LBD|A Chain A, Ligand-Binding Domain Of The Human Nuclear Receptor
Rxr-Alpha
Length = 282
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 99 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 155
>pdb|1DKF|A Chain A, Crystal Structure Of A Heterodimeric Complex Of Rar And
Rxr Ligand-Binding Domains
Length = 233
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 55 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASASHRSIAVKDGILLATGLHVHRN 111
>pdb|2GL8|A Chain A, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|B Chain B, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|C Chain C, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|D Chain D, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
Length = 241
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 58 LVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 113
>pdb|3A9E|A Chain A, Crystal Structure Of A Mixed Agonist-Bound Rar-Alpha And
Antagonist- Bound Rxr-Alpha Heterodimer Ligand Binding
Domains
Length = 240
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 57 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 113
>pdb|1RDT|A Chain A, Crystal Structure Of A New Rexinoid Bound To The Rxralpha
Ligand Binding Doamin In The RxralphaPPARGAMMA
HETERODIMER
pdb|3FC6|A Chain A, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FC6|C Chain C, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FAL|A Chain A, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
pdb|3FAL|C Chain C, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
Length = 242
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 59 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 115
>pdb|3E94|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Tributyltin And A Coactivator Fragment
pdb|3KWY|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Triphenyltin And A Coactivator Fragment
Length = 244
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 61 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 117
>pdb|1MV9|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Eicosanoid Dha (Docosa Hexaenoic
Acid) And A Coactivator Peptide
pdb|1MVC|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Synthetic Agonist Compound Bms 649
And A Coactivator Peptide
pdb|1MZN|A Chain A, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|C Chain C, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|E Chain E, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|G Chain G, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|2P1T|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Methoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
pdb|2P1U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With 3-(2'-Ethoxy)-
Tetrahydronaphtyl Cinnamic Acid And A Fragment Of The
Coactivator Tif-2
pdb|2P1V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Propoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
pdb|3FUG|A Chain A, Crystal Structure Of The Retinoid X Receptor Ligand
Binding Domain Bound To The Synthetic Agonist
3-[4-Hydroxy-3-(3,5,
5,8,8-Pentamethyl-5,6,7,8-Tetrahydronaphthalen-2-Yl)-
Phenyl]acrylic Acid
pdb|2ZXZ|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|2ZY0|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|2ZY0|C Chain C, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|3NSP|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd
pdb|3NSP|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd
pdb|3NSQ|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
pdb|3NSQ|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
pdb|3R29|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
pdb|3R29|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
pdb|3R2A|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|C Chain C, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|D Chain D, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R5M|A Chain A, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
pdb|3R5M|C Chain C, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
Length = 240
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 57 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 113
>pdb|1XDK|A Chain A, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
pdb|1XDK|E Chain E, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
Length = 238
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 55 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 111
>pdb|3IPQ|A Chain A, X-Ray Structure Of Gw3965 Synthetic Agonist Bound To The
Lxr
pdb|3IPS|A Chain A, X-Ray Structure Of Benzisoxazole Synthetic Agonist Bound
To Alpha
pdb|3IPS|B Chain B, X-Ray Structure Of Benzisoxazole Synthetic Agonist Bound
To Alpha
pdb|3IPU|A Chain A, X-Ray Structure Of Benzisoxazole Urea Synthetic Agonist
Boun Lxr-Alpha
pdb|3IPU|B Chain B, X-Ray Structure Of Benzisoxazole Urea Synthetic Agonist
Boun Lxr-Alpha
Length = 283
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 166 QQFAAHVTP----SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR 215
QQ AH T SVQ +V+FAK++PGF LS++DQ+ L+K E+ + SR
Sbjct: 87 QQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSR 140
>pdb|1FBY|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
pdb|1FBY|B Chain B, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
Length = 239
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 56 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 112
>pdb|3UVV|B Chain B, Crystal Structure Of The Ligand Binding Domains Of The
Thyroid Receptor:retinoid X Receptor Complexed With
3,3',5 Triiodo-L- Thyronine And 9-Cis Retinoic Acid
Length = 244
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 59 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 115
>pdb|1FM6|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM6|U Chain U, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM9|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Gi262570 And Co-Activator Peptides.
pdb|1G5Y|A Chain A, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|B Chain B, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|C Chain C, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|D Chain D, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G1U|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|B Chain B, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|D Chain D, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1K74|A Chain A, The 2.3 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Ppargamma And Rxralpha Ligand
Binding Domains Respectively Bound With Gw409544 And
9-Cis Retinoic Acid And Co-Activator Peptides.
pdb|2ACL|A Chain A, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|C Chain C, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|E Chain E, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|G Chain G, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|3OZJ|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
pdb|3OZJ|C Chain C, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
Length = 238
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 55 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 111
>pdb|1XLS|A Chain A, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|B Chain B, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|C Chain C, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|D Chain D, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
Length = 232
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 53 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 109
>pdb|1XV9|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XV9|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XVP|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
pdb|1XVP|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
Length = 236
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 53 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 109
>pdb|1UHL|B Chain B, Crystal Structure Of The Lxralfa-Rxrbeta Lbd Heterodimer
Length = 242
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 166 QQFAAHVTP----SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR 215
QQ AH T SVQ +V+FAK++PGF LS++DQ+ L+K E+ + SR
Sbjct: 46 QQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSR 99
>pdb|3OAP|A Chain A, Crystal Structure Of Human Retinoid X Receptor
Alpha-Ligand Binding Domain Complex With 9-Cis Retinoic
Acid And The Coactivator Peptide Grip-1
Length = 231
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 52 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 108
>pdb|2ACL|B Chain B, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|D Chain D, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|F Chain F, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|H Chain H, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
Length = 244
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 166 QQFAAHVTP----SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR 215
QQ AH T SVQ +V+FAK++PGF LS++DQ+ L+K E+ + SR
Sbjct: 48 QQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSR 101
>pdb|3FC6|B Chain B, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FC6|D Chain D, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FAL|B Chain B, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
pdb|3FAL|D Chain D, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
Length = 266
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 166 QQFAAHVTP----SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR 215
QQ AH T SVQ +V+FAK++PGF LS++DQ+ L+K E+ + SR
Sbjct: 70 QQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSR 123
>pdb|3FFK|A Chain A, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
pdb|3FFK|D Chain D, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
Length = 377
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 8 RSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGR-----VPKRSR 62
R+ + + + +G C ++ L N Q+C +S RY R V K R
Sbjct: 150 RATEVPVSWESFNNGDCFILDLGNNIHQWC----------GSNSNRYERLKATQVSKGIR 199
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQ 104
+ S VS G EP + L+ GP +LP+ TE K+
Sbjct: 200 DNERSGRARVHVSEEGTEPEAMLQVLGPKPALPAGTEDTAKE 241
>pdb|3PCU|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Ligand-Binding Domain Complexed With Lx0278 And Src1
Peptide
Length = 230
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 51 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 107
>pdb|3H0A|A Chain A, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Gamma (Pparg) And Retinoic Acid Receptor Alpha
(Rxra) In Complex With 9-Cis Retinoic Acid, Co-Activator
Peptide, And A Partial Agonist
Length = 228
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 52 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 108
>pdb|2Q60|A Chain A, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|B Chain B, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|C Chain C, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|D Chain D, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
Length = 258
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTRQ 233
+VE+AKR+P F L +DQ+IL++ G+ EL I S + D S+ + G++V R
Sbjct: 74 LVEWAKRIPHFSSLPLEDQVILLRAGWNELLIASFSHRSIDVKDSILLASGLHVHRH 130
>pdb|1UHL|A Chain A, Crystal Structure Of The Lxralfa-Rxrbeta Lbd Heterodimer
Length = 236
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTRQ 233
+VE+AKR+P F L DDQ+IL++ G+ EL I S + D + + G++V R
Sbjct: 53 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRN 109
>pdb|1RGI|G Chain G, Crystal Structure Of Gelsolin Domains G1-G3 Bound To Actin
Length = 346
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 21/105 (20%)
Query: 8 RSIQKQIEYRCLRDGKCLVIRLNRNRCQYC-----RFKKCLAVGMS---RDSVRYGRVPK 59
R+ + + + +G C ++ L N Q+C RF++ A +S RD+ R GR
Sbjct: 147 RATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSNRFERLKATQVSKGIRDNERSGRA-- 204
Query: 60 RSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQ 104
V GAEP + L+ GP +LP +TE K+
Sbjct: 205 -----------QVSVFEEGAEPEAMLQVLGPKPTLPEATEDTVKE 238
>pdb|1H9U|A Chain A, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|B Chain B, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|C Chain C, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|D Chain D, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
Length = 224
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTRQ 233
+VE+AKR+P F L DDQ+IL++ G+ EL I S + D + + G++V R
Sbjct: 52 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRN 108
>pdb|3FFN|A Chain A, Crystal Structure Of Calcium-Free Human Gelsolin
pdb|3FFN|B Chain B, Crystal Structure Of Calcium-Free Human Gelsolin
Length = 782
Score = 43.5 bits (101), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 8 RSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGR-----VPKRSR 62
R+ + + + +G C ++ L N Q+C +S RY R V K R
Sbjct: 199 RATEVPVSWESFNNGDCFILDLGNNIHQWC----------GSNSNRYERLKATQVSKGIR 248
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQ 104
+ S VS G EP + L+ GP +LP+ TE K+
Sbjct: 249 DNERSGRARVHVSEEGTEPEAMLQVLGPKPALPAGTEDTAKE 290
>pdb|2FGH|A Chain A, Atp Bound Gelsolin
pdb|2FGH|B Chain B, Atp Bound Gelsolin
Length = 731
Score = 43.5 bits (101), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 21/105 (20%)
Query: 8 RSIQKQIEYRCLRDGKCLVIRLNRNRCQYC-----RFKKCLAVGMS---RDSVRYGRVPK 59
R+ + + + +G C ++ L N Q+C RF++ A +S RD+ R GR
Sbjct: 148 RATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSNRFERLKATQVSKGIRDNERSGR--- 204
Query: 60 RSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQ 104
V GAEP + L+ GP +LP +TE K+
Sbjct: 205 ----------AQVSVFEEGAEPEAMLQVLGPKPTLPEATEDTVKE 239
>pdb|4HN5|A Chain A, Gr Dna Binding Domain - Tslp Ngre Complex
pdb|4HN5|B Chain B, Gr Dna Binding Domain - Tslp Ngre Complex
Length = 117
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 5 FFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDS 51
FF+R+++ Q Y C C++ ++ R C CR++KCL GM+ ++
Sbjct: 55 FFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEA 101
>pdb|1I7G|A Chain A, Crystal Structure Of The Ligand Binding Domain From Human
Ppar-Alpha In Complex With The Agonist Az 242
Length = 287
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR-LTTDSSLTFSDGMYVTRQ 233
+V + EFAK +PGF +L +DQ+ L+K G +E +S + D L ++TR+
Sbjct: 102 TVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITRE 161
Query: 234 QLE 236
L+
Sbjct: 162 FLK 164
>pdb|3ET1|A Chain A, Structure Of Pparalpha With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
pdb|3ET1|B Chain B, Structure Of Pparalpha With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
Length = 291
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR-LTTDSSLTFSDGMYVTRQ 233
+V + EFAK +PGF +L +DQ+ L+K G +E +S + D L ++TR+
Sbjct: 106 TVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITRE 165
Query: 234 QLE 236
L+
Sbjct: 166 FLK 168
>pdb|1D0N|A Chain A, The Crystal Structure Of Calcium-Free Equine Plasma
Gelsolin.
pdb|1D0N|B Chain B, The Crystal Structure Of Calcium-Free Equine Plasma
Gelsolin
Length = 729
Score = 43.1 bits (100), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 21/105 (20%)
Query: 8 RSIQKQIEYRCLRDGKCLVIRLNRNRCQYC-----RFKKCLAVGMS---RDSVRYGRVPK 59
R+ + + + +G C ++ L N Q+C RF++ A +S RD+ R GR
Sbjct: 146 RATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSNRFERLKATQVSKGIRDNERSGR--- 202
Query: 60 RSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQ 104
V GAEP + L+ GP +LP +TE K+
Sbjct: 203 ----------AQVSVFEEGAEPEAMLQVLGPKPTLPEATEDTVKE 237
>pdb|2ZNN|A Chain A, Human Pprr Alpha Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp703
pdb|3VI8|A Chain A, Human Pprr Alpha Ligand Binding Domain In Complex With A
Synthetic Agonist Aphm13
Length = 273
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR-LTTDSSLTFSDGMYVTRQ 233
+V + EFAK +PGF +L +DQ+ L+K G +E +S + D L ++TR+
Sbjct: 88 TVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITRE 147
Query: 234 QLE 236
L+
Sbjct: 148 FLK 150
>pdb|2REW|A Chain A, Crystal Structure Of Pparalpha Ligand Binding Domain With
Bms-631707
pdb|3KDT|A Chain A, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-(Methoxycarbonyl)glycine
pdb|3KDT|B Chain B, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-(Methoxycarbonyl)glycine
pdb|3KDU|A Chain A, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-((4-
Methylphenoxy)carbonyl)gl
pdb|3KDU|B Chain B, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-((4-
Methylphenoxy)carbonyl)gl
Length = 277
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR-LTTDSSLTFSDGMYVTRQ 233
+V + EFAK +PGF +L +DQ+ L+K G +E +S + D L ++TR+
Sbjct: 92 TVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITRE 151
Query: 234 QLE 236
L+
Sbjct: 152 FLK 154
>pdb|3G8I|A Chain A, Aleglitazar, A New, Potent, And Balanced Ppar AlphaGAMMA
Agonist For The Treatment Of Type Ii Diabetes
Length = 270
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR-LTTDSSLTFSDGMYVTRQ 233
+V + EFAK +PGF +L +DQ+ L+K G +E +S + D L ++TR+
Sbjct: 85 TVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITRE 144
Query: 234 QLE 236
L+
Sbjct: 145 FLK 147
>pdb|2NPA|A Chain A, The Crystal Structure Of The Human Pparaplpha Ligand
Binding Domain In Complex With A A-Hydroxyimino
Phenylpropanoic Acid
pdb|2NPA|C Chain C, The Crystal Structure Of The Human Pparaplpha Ligand
Binding Domain In Complex With A A-Hydroxyimino
Phenylpropanoic Acid
Length = 270
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR-LTTDSSLTFSDGMYVTRQ 233
+V + EFAK +PGF +L +DQ+ L+K G +E +S + D L ++TR+
Sbjct: 85 TVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITRE 144
Query: 234 QLE 236
L+
Sbjct: 145 FLK 147
>pdb|1KKQ|A Chain A, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|B Chain B, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|C Chain C, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|D Chain D, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
Length = 269
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR-LTTDSSLTFSDGMYVTRQ 233
+V + EFAK +PGF +L +DQ+ L+K G +E +S + D L ++TR+
Sbjct: 84 TVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITRE 143
Query: 234 QLE 236
L+
Sbjct: 144 FLK 146
>pdb|3SP6|A Chain A, Structural Basis For Iloprost As A Dual PparalphaDELTA
AGONIST
Length = 285
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR-LTTDSSLTFSDGMYVTRQ 233
+V + EFAK +PGF +L +DQ+ L+K G +E +S + D L ++TR+
Sbjct: 100 TVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITRE 159
Query: 234 QLE 236
L+
Sbjct: 160 FLK 162
>pdb|2P54|A Chain A, A Crystal Structure Of Ppar Alpha Bound With Src1 Peptide
And Gw735
pdb|3FEI|A Chain A, Design And Biological Evaluation Of Novel, Balanced Dual
PparaG AGONISTS
Length = 267
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR-LTTDSSLTFSDGMYVTRQ 233
+V + EFAK +PGF +L +DQ+ L+K G +E +S + D L ++TR+
Sbjct: 82 TVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITRE 141
Query: 234 QLE 236
L+
Sbjct: 142 FLK 144
>pdb|1K7L|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|E Chain E, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|G Chain G, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide
Length = 288
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR-LTTDSSLTFSDGMYVTRQ 233
+V + EFAK +PGF +L +DQ+ L+K G +E +S + D L ++TR+
Sbjct: 103 TVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITRE 162
Query: 234 QLE 236
L+
Sbjct: 163 FLK 165
>pdb|3L0E|A Chain A, X-Ray Crystal Structure Of A Potent Liver X Receptor
Modulator
Length = 253
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 166 QQFAAHVTP----SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR 215
QQ AH T SVQ +V+FAK+VPGF L ++DQ+ L+K E+ + +R
Sbjct: 57 QQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETAR 110
>pdb|1UPV|A Chain A, Crystal Structure Of The Human Liver X Receptor Beta
Ligand Binding Domain In Complex With A Synthetic
Agonist
pdb|1UPW|A Chain A, Crystal Structure Of The Human Liver X Receptor Beta
Ligand Binding Domain In Complex With A Synthetic
Agonist
Length = 257
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 166 QQFAAHVTP----SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR 215
QQ AH T SVQ +V+FAK+VPGF L ++DQ+ L+K E+ + +R
Sbjct: 61 QQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETAR 114
>pdb|4DK8|A Chain A, Crystal Structure Of Lxr Ligand Binding Domain In Complex
With Partial Agonist 5
pdb|4DK8|C Chain C, Crystal Structure Of Lxr Ligand Binding Domain In Complex
With Partial Agonist 5
Length = 247
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 166 QQFAAHVTP----SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR 215
QQ AH T SVQ +V+FAK+VPGF L ++DQ+ L+K E+ + +R
Sbjct: 51 QQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETAR 104
>pdb|1PQ6|A Chain A, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ6|B Chain B, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ6|C Chain C, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ6|D Chain D, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ9|A Chain A, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQ9|B Chain B, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQ9|C Chain C, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQ9|D Chain D, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQC|A Chain A, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|1PQC|B Chain B, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|1PQC|C Chain C, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|1PQC|D Chain D, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|3KFC|A Chain A, Complex Structure Of Lxr With An Agonist
pdb|3KFC|B Chain B, Complex Structure Of Lxr With An Agonist
pdb|3KFC|C Chain C, Complex Structure Of Lxr With An Agonist
pdb|3KFC|D Chain D, Complex Structure Of Lxr With An Agonist
Length = 253
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 166 QQFAAHVTP----SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR 215
QQ AH T SVQ +V+FAK+VPGF L ++DQ+ L+K E+ + +R
Sbjct: 57 QQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETAR 110
>pdb|1P8D|A Chain A, X-Ray Crystal Structure Of Lxr Ligand Binding Domain With
24(S),25- Epoxycholesterol
pdb|1P8D|B Chain B, X-Ray Crystal Structure Of Lxr Ligand Binding Domain With
24(S),25- Epoxycholesterol
Length = 250
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 166 QQFAAHVTP----SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR 215
QQ AH T SVQ +V+FAK+VPGF L ++DQ+ L+K E+ + +R
Sbjct: 54 QQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETAR 107
>pdb|2QW4|A Chain A, Human Nr4a1 Ligand-Binding Domain
pdb|2QW4|B Chain B, Human Nr4a1 Ligand-Binding Domain
pdb|2QW4|C Chain C, Human Nr4a1 Ligand-Binding Domain
pdb|2QW4|D Chain D, Human Nr4a1 Ligand-Binding Domain
Length = 273
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF ++ S++ + ++A+++PGF +LS DQ +L++ F EL+I Y S+ + L
Sbjct: 79 QQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSK-PGEGKL 137
Query: 223 TFSDGMYVTRQQ 234
F G+ + R Q
Sbjct: 138 IFCSGLVLHRLQ 149
>pdb|3V3E|B Chain B, Crystal Structure Of The Human Nur77 Ligand-Binding Domain
pdb|3V3E|A Chain A, Crystal Structure Of The Human Nur77 Ligand-Binding Domain
pdb|3V3Q|A Chain A, Crystal Structure Of Human Nur77 Ligand-Binding Domain In
Complex With Ethyl 2-[2,3,4
Trimethoxy-6(1-Octanoyl)phenyl]acetate
pdb|3V3Q|B Chain B, Crystal Structure Of Human Nur77 Ligand-Binding Domain In
Complex With Ethyl 2-[2,3,4
Trimethoxy-6(1-Octanoyl)phenyl]acetate
Length = 257
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF ++ S++ + ++A+++PGF +LS DQ +L++ F EL+I Y S+ + L
Sbjct: 55 QQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSK-PGEGKL 113
Query: 223 TFSDGMYVTRQQ 234
F G+ + R Q
Sbjct: 114 IFCSGLVLHRLQ 125
>pdb|4DK7|A Chain A, Crystal Structure Of Lxr Ligand Binding Domain In Complex
With Full Agonist 1
pdb|4DK7|C Chain C, Crystal Structure Of Lxr Ligand Binding Domain In Complex
With Full Agonist 1
Length = 247
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 166 QQFAAHVTP----SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR 215
QQ AH T SVQ +V+FAK+VPGF L ++DQ+ L+K E+ + +R
Sbjct: 51 QQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIXLLETAR 104
>pdb|1R4O|A Chain A, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
pdb|1R4O|B Chain B, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
pdb|1R4R|A Chain A, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
Length = 92
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 5 FFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDS 51
FF+R+++ Q Y C C++ ++ R C CR++KCL GM+ ++
Sbjct: 30 FFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEA 76
>pdb|1OVL|A Chain A, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|D Chain D, Crystal Structure Of Nurr1 Lbd
Length = 271
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF +T S++ + +A+++PGF DL + DQ +L + F EL++ Y S + L
Sbjct: 77 QQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSN-PVEGKL 135
Query: 223 TFSDGMYVTRQQ 234
F +G+ + R Q
Sbjct: 136 IFCNGVVLHRLQ 147
>pdb|1R4R|B Chain B, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
Length = 92
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 5 FFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDS 51
FF+R+++ Q Y C C++ ++ R C CR++KCL GM+ ++
Sbjct: 30 FFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEA 76
>pdb|3G9P|B Chain B, Gr Dna Binding Domain:sgk 16bp Complex-7
pdb|3G9P|A Chain A, Gr Dna Binding Domain:sgk 16bp Complex-7
pdb|3FYL|A Chain A, Gr Dna Binding Domain:cgt Complex
pdb|3FYL|B Chain B, Gr Dna Binding Domain:cgt Complex
pdb|3G6P|A Chain A, Gr Dna Binding Domain:fkbp5 Complex, 18bp
pdb|3G6P|B Chain B, Gr Dna Binding Domain:fkbp5 Complex, 18bp
pdb|3G6Q|B Chain B, Gr Dna Binding Domain:fkbp5 Binding Site Complex-9
pdb|3G6Q|A Chain A, Gr Dna Binding Domain:fkbp5 Binding Site Complex-9
pdb|3G6R|B Chain B, Gr Dna Binding Domain:fkbp5 Complex-52, 18bp
pdb|3G6R|A Chain A, Gr Dna Binding Domain:fkbp5 Complex-52, 18bp
pdb|3G6U|A Chain A, Gr Dna-Binding Domain:fkbp5 16bp Complex-49
pdb|3G6U|B Chain B, Gr Dna-Binding Domain:fkbp5 16bp Complex-49
pdb|3G8U|A Chain A, Dna Binding Domain:gilz 16bp Complex-5
pdb|3G8U|B Chain B, Dna Binding Domain:gilz 16bp Complex-5
pdb|3G8X|A Chain A, Gr Dna Binding Domain:gilz 16bp Complex-65
pdb|3G8X|B Chain B, Gr Dna Binding Domain:gilz 16bp Complex-65
pdb|3G97|B Chain B, Gr Dna-Binding Domain:gilz 16bp Complex-9
pdb|3G97|A Chain A, Gr Dna-Binding Domain:gilz 16bp Complex-9
pdb|3G99|A Chain A, Gr Dna Binding Domain:pal Complex-9
pdb|3G99|B Chain B, Gr Dna Binding Domain:pal Complex-9
pdb|3G9I|A Chain A, Gr Dna Binding Domain: Pal Complex-35
pdb|3G9I|B Chain B, Gr Dna Binding Domain: Pal Complex-35
pdb|3G9J|A Chain A, Gr Dna Binding Domain:pal, 18bp Complex-36
pdb|3G9J|B Chain B, Gr Dna Binding Domain:pal, 18bp Complex-36
pdb|3G9M|A Chain A, Gr Dna-Binding Domain:sgk 16bp Complex-44
pdb|3G9M|B Chain B, Gr Dna-Binding Domain:sgk 16bp Complex-44
pdb|3G9O|B Chain B, Gr Dna-Binding Domain:sgk 16bp Complex-9
pdb|3G9O|A Chain A, Gr Dna-Binding Domain:sgk 16bp Complex-9
Length = 90
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 5 FFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDS 51
FF+R+++ Q Y C C++ ++ R C CR++KCL GM+ ++
Sbjct: 28 FFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEA 74
>pdb|1R1K|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO PONASTERONE A
pdb|2R40|D Chain D, Crystal Structure Of 20e Bound Ecr/usp
Length = 266
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR---LTTDSS 221
++Q +VQ +VEFAK +PGF +SQ DQ+ L+K E+ + V+R TDS
Sbjct: 70 FRQITEMTILTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAATDSV 129
Query: 222 LTFSDGMYVTR 232
L F++ TR
Sbjct: 130 L-FANNQAYTR 139
>pdb|1R20|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO THE SYNTHETIC AGONIST
BYI06830
pdb|3IXP|D Chain D, Crystal Structure Of The Ecdysone Receptor Bound To
Byi08346
Length = 265
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR---LTTDSS 221
++Q +VQ +VEFAK +PGF +SQ DQ+ L+K E+ + V+R TDS
Sbjct: 69 FRQITEMTILTVQLIVEFAKGLPGFSKISQSDQITLLKACSSEVMMLRVARRYDAATDSV 128
Query: 222 LTFSDGMYVTR 232
L F++ TR
Sbjct: 129 L-FANNQAYTR 138
>pdb|1GLU|A Chain A, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
pdb|1GLU|B Chain B, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
Length = 81
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 5 FFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDS 51
FF+R+++ Q Y C C++ ++ R C CR++KCL GM+ ++
Sbjct: 30 FFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEA 76
>pdb|2C7A|A Chain A, Structure Of The Progesterone Receptor-Dna Complex
pdb|2C7A|B Chain B, Structure Of The Progesterone Receptor-Dna Complex
Length = 78
Score = 41.6 bits (96), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 5 FFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGM 47
FF+R+++ Q Y C C+V ++ R C CR +KC GM
Sbjct: 28 FFKRAMEGQHNYLCAGRNDCIVDKIRRKNCPACRLRKCCQAGM 70
>pdb|1YJE|A Chain A, Crystal Structure Of The Rngfi-B Ligand-Binding Domain
Length = 264
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF ++ S+ + ++A+++PGF +LS DQ +L++ F EL+I Y S+ + L
Sbjct: 70 QQFYDLLSGSLDVIRKWAEKIPGFIELSPGDQDLLLESAFLELFILRLAYRSK-PGEGKL 128
Query: 223 TFSDGMYVTRQQ 234
F G+ + R Q
Sbjct: 129 IFCSGLVLHRLQ 140
>pdb|1OVL|B Chain B, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|C Chain C, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|E Chain E, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|F Chain F, Crystal Structure Of Nurr1 Lbd
Length = 271
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF +T S + + +A+++PGF DL + DQ +L + F EL++ Y S + L
Sbjct: 77 QQFYDLLTGSXEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSN-PVEGKL 135
Query: 223 TFSDGMYVTRQQ 234
F +G+ + R Q
Sbjct: 136 IFCNGVVLHRLQ 147
>pdb|1XIU|A Chain A, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
pdb|1XIU|B Chain B, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
Length = 230
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWI-GYVSR-LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F +L +DQ+IL++ G+ EL I G+ R + + + G++V R
Sbjct: 47 LVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSIMAKDGILLATGLHVHR 102
>pdb|1KCQ|A Chain A, Human Gelsolin Domain 2 With A Cd2+ Bound
Length = 104
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 8 RSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGR-----VPKRSR 62
R+ + + + +G C ++ L N Q+C +S RY R V K R
Sbjct: 15 RATEVPVSWESFNNGDCFILDLGNNIHQWC----------GSNSNRYERLKATQVSKGIR 64
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTE 99
+ S VS G EP + L+ GP +LP+ TE
Sbjct: 65 DNERSGRARVHVSEEGTEPEAMLQVLGPKPALPAGTE 101
>pdb|3Q95|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Estriol
Length = 260
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 62 HMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 120
>pdb|3Q97|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Two Isomers Of Ethoxy
Triphenylethylene
Length = 260
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 62 HMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 120
>pdb|3Q95|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Estriol
pdb|3Q97|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Two Isomers Of Ethoxy
Triphenylethylene
Length = 260
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 62 HMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 120
>pdb|2QZO|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Way-169916
Length = 258
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 60 HMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 118
>pdb|3UU7|B Chain B, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-A
Length = 251
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 55 HMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 113
>pdb|3UUA|A Chain A, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-Af
Length = 251
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 55 HMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 113
>pdb|1ZKY|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-3m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|1ZKY|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-3m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1V|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1V|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2FAI|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-2m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2FAI|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-2m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1Z|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17methyl-17alpha-Dihydroequilenin And A
Glucoc Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1Z|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17methyl-17alpha-Dihydroequilenin And A
Glucoc Interacting Protein 1 Nr Box Ii Peptide
pdb|2B23|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain And A
Glucocorticoid Receptor-Interacting Protein 1 Nr Box Ii
Peptide
pdb|2B23|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain And A
Glucocorticoid Receptor-Interacting Protein 1 Nr Box Ii
Peptide
pdb|2G44|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m-G And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2G44|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m-G And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2G5O|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 2- (But-1-Enyl)-17beta-Estradiol And A
Glucocorticoid Receptor Interacting Protein 1 Nr Box Ii
Peptide
pdb|2G5O|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 2- (But-1-Enyl)-17beta-Estradiol And A
Glucocorticoid Receptor Interacting Protein 1 Nr Box Ii
Peptide
Length = 257
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 59 HMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 117
>pdb|3UUC|A Chain A, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
pdb|3UUC|B Chain B, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
pdb|3UUC|C Chain C, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
pdb|3UUC|D Chain D, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
Length = 251
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 55 HMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 113
>pdb|3OS8|C Chain C, Estrogen Receptor
pdb|3OS8|D Chain D, Estrogen Receptor
pdb|3OS9|A Chain A, Estrogen Receptor
pdb|3OS9|B Chain B, Estrogen Receptor
pdb|3OS9|C Chain C, Estrogen Receptor
pdb|3OS9|D Chain D, Estrogen Receptor
pdb|3OSA|A Chain A, Estrogen Receptor
pdb|3OSA|B Chain B, Estrogen Receptor
pdb|3OSA|C Chain C, Estrogen Receptor
pdb|3OSA|D Chain D, Estrogen Receptor
Length = 258
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL++ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 61 HMINWAKRVPGFVDLTRHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 119
>pdb|2QA8|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With Genistein
pdb|2QZO|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Way-169916
Length = 258
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 60 HMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 118
>pdb|3GZ9|A Chain A, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Delta (Ppard) In Complex With A Full Agonist
Length = 269
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 25/105 (23%)
Query: 156 CHESQRLW------LWQQFAAHVTP------------------SVQRVVEFAKRVPGFCD 191
H+ + LW +W+Q + P +V+ + EFAK +P F
Sbjct: 43 IHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTTVETVRELTEFAKSIPSFGS 102
Query: 192 LSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQQL 235
L +DQ+ L+K G E ++ L L ++G +VTR+ L
Sbjct: 103 LFLNDQVTLLKYGVHEAIFAMLASLVNKDGLLVANGSGFVTREFL 147
>pdb|3UUA|B Chain B, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-Af
pdb|3UUD|A Chain A, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Estradiol
Length = 251
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 55 HMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 113
>pdb|3UU7|A Chain A, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-A
pdb|3UUD|B Chain B, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Estradiol
Length = 251
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 55 HMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 113
>pdb|1ERR|A Chain A, Human Estrogen Receptor Ligand-Binding Domain In Complex
With Raloxifene
pdb|1ERR|B Chain B, Human Estrogen Receptor Ligand-Binding Domain In Complex
With Raloxifene
Length = 253
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 56 HMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 114
>pdb|3OS8|A Chain A, Estrogen Receptor
pdb|3OS8|B Chain B, Estrogen Receptor
Length = 258
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL++ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 61 HMINWAKRVPGFVDLTRHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 119
>pdb|2OCF|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Estradiol And The E2#23 Fn3 Monobody
Length = 298
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 59 HMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 117
>pdb|3HM1|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And Estrone
((8r,9s,13s,14s)-3-Hydroxy-
7,8,9,11,12,14,15,
16-Octahydro-6h-Cyclopenta[a]phenanthren-
pdb|3HM1|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And Estrone
((8r,9s,13s,14s)-3-Hydroxy-
7,8,9,11,12,14,15,
16-Octahydro-6h-Cyclopenta[a]phenanthren-
Length = 253
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 59 HMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 117
>pdb|3ET2|A Chain A, Structure Of Ppardelta With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
pdb|3ET2|B Chain B, Structure Of Ppardelta With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
Length = 287
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 25/105 (23%)
Query: 156 CHESQRLW------LWQQFAAHVTP------------------SVQRVVEFAKRVPGFCD 191
H+ + LW +W+Q + P +V+ + EFAK +P F
Sbjct: 59 IHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTTVETVRELTEFAKSIPSFSS 118
Query: 192 LSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQQL 235
L +DQ+ L+K G E ++ + L ++G +VTR+ L
Sbjct: 119 LFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTREFL 163
>pdb|2B50|A Chain A, Human Nuclear Receptor-Ligand Complex 2
pdb|2B50|B Chain B, Human Nuclear Receptor-Ligand Complex 2
Length = 272
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 25/105 (23%)
Query: 156 CHESQRLW------LWQQFAAHVTP------------------SVQRVVEFAKRVPGFCD 191
H+ + LW +W+Q + P +V+ + EFAK +P F
Sbjct: 45 IHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTTVETVRELTEFAKSIPSFSS 104
Query: 192 LSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQQL 235
L +DQ+ L+K G E ++ + L ++G +VTR+ L
Sbjct: 105 LFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTREFL 149
>pdb|1Y0S|A Chain A, Crystal Structure Of Ppar Delta Complexed With Gw2331
pdb|1Y0S|B Chain B, Crystal Structure Of Ppar Delta Complexed With Gw2331
Length = 272
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 25/105 (23%)
Query: 156 CHESQRLW------LWQQFAAHVTP------------------SVQRVVEFAKRVPGFCD 191
H+ + LW +W+Q + P +V+ + EFAK +P F
Sbjct: 44 IHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTTVETVRELTEFAKSIPSFSS 103
Query: 192 LSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQQL 235
L +DQ+ L+K G E ++ + L ++G +VTR+ L
Sbjct: 104 LFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTREFL 148
>pdb|3SP9|A Chain A, Structural Basis For Iloprost As A Dual PparalphaDELTA
AGONIST
pdb|3SP9|B Chain B, Structural Basis For Iloprost As A Dual PparalphaDELTA
AGONIST
Length = 281
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 25/105 (23%)
Query: 156 CHESQRLW------LWQQFAAHVTP------------------SVQRVVEFAKRVPGFCD 191
H+ + LW +W+Q + P +V+ + EFAK +P F
Sbjct: 53 IHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTTVETVRELTEFAKSIPSFSS 112
Query: 192 LSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQQL 235
L +DQ+ L+K G E ++ + L ++G +VTR+ L
Sbjct: 113 LFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTREFL 157
>pdb|2XYJ|A Chain A, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYJ|B Chain B, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYW|A Chain A, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYW|B Chain B, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYX|A Chain A, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYX|B Chain B, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
Length = 288
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 25/105 (23%)
Query: 156 CHESQRLW------LWQQFAAHVTP------------------SVQRVVEFAKRVPGFCD 191
H+ + LW +W+Q + P +V+ + EFAK +P F
Sbjct: 60 IHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTTVETVRELTEFAKSIPSFSS 119
Query: 192 LSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQQL 235
L +DQ+ L+K G E ++ + L ++G +VTR+ L
Sbjct: 120 LFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTREFL 164
>pdb|2Q5G|A Chain A, Ligand Binding Domain Of Ppar Delta Receptor In Complex
With A Partial Agonist
pdb|2Q5G|B Chain B, Ligand Binding Domain Of Ppar Delta Receptor In Complex
With A Partial Agonist
Length = 283
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 25/105 (23%)
Query: 156 CHESQRLW------LWQQFAAHVTP------------------SVQRVVEFAKRVPGFCD 191
H+ + LW +W+Q + P +V+ + EFAK +P F
Sbjct: 55 IHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTTVETVRELTEFAKSIPSFSS 114
Query: 192 LSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQQL 235
L +DQ+ L+K G E ++ + L ++G +VTR+ L
Sbjct: 115 LFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTREFL 159
>pdb|2J14|A Chain A, 3,4,5-Trisubstituted Isoxazoles As Novel Ppardelta
Agonists: Part2
pdb|2J14|B Chain B, 3,4,5-Trisubstituted Isoxazoles As Novel Ppardelta
Agonists: Part2
pdb|3OZ0|A Chain A, Ppar Delta In Complex With Azppard02
Length = 285
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 25/105 (23%)
Query: 156 CHESQRLW------LWQQFAAHVTP------------------SVQRVVEFAKRVPGFCD 191
H+ + LW +W+Q + P +V+ + EFAK +P F
Sbjct: 57 IHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTTVETVRELTEFAKSIPSFSS 116
Query: 192 LSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQQL 235
L +DQ+ L+K G E ++ + L ++G +VTR+ L
Sbjct: 117 LFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTREFL 161
>pdb|1GWX|A Chain A, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|1GWX|B Chain B, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|3GWX|A Chain A, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-activated Receptors
pdb|3GWX|B Chain B, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-activated Receptors
pdb|3DY6|A Chain A, Ppardelta Complexed With An Anthranilic Acid Partial
Agonist
pdb|3DY6|B Chain B, Ppardelta Complexed With An Anthranilic Acid Partial
Agonist
pdb|3PEQ|A Chain A, Ppard Complexed With A Phenoxyacetic Acid Partial Agonist
pdb|3PEQ|B Chain B, Ppard Complexed With A Phenoxyacetic Acid Partial Agonist
Length = 271
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 25/105 (23%)
Query: 156 CHESQRLW------LWQQFAAHVTP------------------SVQRVVEFAKRVPGFCD 191
H+ + LW +W+Q + P +V+ + EFAK +P F
Sbjct: 43 IHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTTVETVRELTEFAKSIPSFSS 102
Query: 192 LSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQQL 235
L +DQ+ L+K G E ++ + L ++G +VTR+ L
Sbjct: 103 LFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTREFL 147
>pdb|2GWX|A Chain A, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|2GWX|B Chain B, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|2BAW|A Chain A, Human Nuclear Receptor-Ligand Complex 1
pdb|2BAW|B Chain B, Human Nuclear Receptor-Ligand Complex 1
pdb|3D5F|A Chain A, Crystal Structure Of Ppar-Delta Complex
pdb|3D5F|B Chain B, Crystal Structure Of Ppar-Delta Complex
Length = 267
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 25/105 (23%)
Query: 156 CHESQRLW------LWQQFAAHVTP------------------SVQRVVEFAKRVPGFCD 191
H+ + LW +W+Q + P +V+ + EFAK +P F
Sbjct: 39 IHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTTVETVRELTEFAKSIPSFSS 98
Query: 192 LSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQQL 235
L +DQ+ L+K G E ++ + L ++G +VTR+ L
Sbjct: 99 LFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTREFL 143
>pdb|2ZNP|A Chain A, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp204
pdb|2ZNP|B Chain B, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp204
pdb|2ZNQ|A Chain A, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp401
pdb|2ZNQ|B Chain B, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp401
Length = 276
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 25/105 (23%)
Query: 156 CHESQRLW------LWQQFAAHVTP------------------SVQRVVEFAKRVPGFCD 191
H+ + LW +W+Q + P +V+ + EFAK +P F
Sbjct: 48 IHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTTVETVRELTEFAKSIPSFSS 107
Query: 192 LSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQQL 235
L +DQ+ L+K G E ++ + L ++G +VTR+ L
Sbjct: 108 LFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTREFL 152
>pdb|3TKM|A Chain A, Crystal Structure Ppar Delta Binding Gw0742
Length = 275
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 25/105 (23%)
Query: 156 CHESQRLW------LWQQFAAHVTP------------------SVQRVVEFAKRVPGFCD 191
H+ + LW +W+Q + P +V+ + EFAK +P F
Sbjct: 47 IHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTTVETVRELTEFAKSIPSFSS 106
Query: 192 LSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQQL 235
L +DQ+ L+K G E ++ + L ++G +VTR+ L
Sbjct: 107 LFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTREFL 151
>pdb|2AWH|A Chain A, Human Nuclear Receptor-Ligand Complex 1
pdb|2AWH|B Chain B, Human Nuclear Receptor-Ligand Complex 1
Length = 268
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 25/105 (23%)
Query: 156 CHESQRLW------LWQQFAAHVTP------------------SVQRVVEFAKRVPGFCD 191
H+ + LW +W+Q + P +V+ + EFAK +P F
Sbjct: 40 IHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTTVETVRELTEFAKSIPSFSS 99
Query: 192 LSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQQL 235
L +DQ+ L+K G E ++ + L ++G +VTR+ L
Sbjct: 100 LFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTREFL 144
>pdb|1Z5X|U Chain U, Hemipteran Ecdysone Receptor Ligand-Binding Domain
Complexed With Ponasterone A
Length = 262
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI-GYVSR-LTTDSSLTFSDGMYVTRQ 233
+++E+AK +P F +L +DQ+IL+K G+ EL I G+ R ++ + + G+ V R
Sbjct: 79 QLIEWAKHIPHFTELPVEDQVILLKSGWNELLIAGFSHRSMSVKDGIMLATGLVVHRN 136
>pdb|1UOM|A Chain A, The Structure Of Estrogen Receptor In Complex With A
Selective And Potent Tetrahydroisochiolin Ligand.
pdb|1XQC|A Chain A, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
pdb|1XQC|B Chain B, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
pdb|1XQC|C Chain C, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
pdb|1XQC|D Chain D, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
Length = 254
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 57 HMINWAKRVPGFVDLTLHDQVHLLESAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 115
>pdb|2YAT|A Chain A, Crystal Structure Of Estradiol Derived Metal Chelate And
Estrogen Receptor-Ligand Binding Domain Complex
Length = 252
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 57 HMINWAKRVPGFVDLTLHDQVHLLESAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 115
>pdb|1QKT|A Chain A, Mutant Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|2AYR|A Chain A, A Serm Designed For The Treatment Of Uterine Leiomyoma
With Unique Tissue Specificity For Uterus And Ovaries In
Rats
pdb|2Q70|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complxed To
A Benzopyran Ligand
pdb|2Q70|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complxed To
A Benzopyran Ligand
pdb|2POG|A Chain A, Benzopyrans As Selective Estrogen Receptor B Agonists
(Serbas). Part 2: Structure Activity Relationship
Studies On The Benzopyran Scaffold.
pdb|2POG|B Chain B, Benzopyrans As Selective Estrogen Receptor B Agonists
(Serbas). Part 2: Structure Activity Relationship
Studies On The Benzopyran Scaffold.
pdb|2QE4|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Benzopyran Agonist
pdb|2QE4|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Benzopyran Agonist
pdb|2R6W|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
A Serm
pdb|2R6W|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
A Serm
pdb|2R6Y|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Serm
pdb|2R6Y|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Serm
Length = 248
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 53 HMINWAKRVPGFVDLTLHDQVHLLESAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 111
>pdb|1A52|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
Estradiol
pdb|1A52|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
Estradiol
Length = 258
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 60 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 118
>pdb|3ERD|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Diethylstilbestrol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|3ERD|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Diethylstilbestrol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|3ERT|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 4- Hydroxytamoxifen
pdb|1R5K|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Gw5638
pdb|1R5K|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Gw5638
pdb|1R5K|C Chain C, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Gw5638
Length = 261
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 63 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 121
>pdb|2P15|A Chain A, Crystal Structure Of The Er Alpha Ligand Binding Domain
With The Agonist Ortho-Trifluoromethylphenylvinyl
Estradiol
pdb|2P15|B Chain B, Crystal Structure Of The Er Alpha Ligand Binding Domain
With The Agonist Ortho-Trifluoromethylphenylvinyl
Estradiol
pdb|2Q6J|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Complexed To
A B-N Substituted Ligand
pdb|2Q6J|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Complexed To
A B-N Substituted Ligand
pdb|2QA6|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Mutant 537s
Complexed With
4-(6-Hydroxy-1h-Indazol-3-Yl)benzene-1,3-Diol
pdb|2QA6|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Mutant 537s
Complexed With
4-(6-Hydroxy-1h-Indazol-3-Yl)benzene-1,3-Diol
pdb|2QAB|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With An Ethyl
Indazole Compound
pdb|2QAB|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With An Ethyl
Indazole Compound
pdb|2QGT|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To An Ether Estradiol Compound
pdb|2QGT|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To An Ether Estradiol Compound
pdb|2QGW|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With A Chloro-Indazole Compound
pdb|2QGW|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With A Chloro-Indazole Compound
pdb|2QH6|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic
Diarylethylene Compound
pdb|2QH6|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic
Diarylethylene Compound
pdb|2QR9|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic Derivative
Compound
pdb|2QR9|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic Derivative
Compound
pdb|2QSE|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Burned Meat Compound
4-Oh-Phip
pdb|2QSE|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Burned Meat Compound
4-Oh-Phip
pdb|2QXM|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To Burned Meat Compound Phip
pdb|2QXM|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To Burned Meat Compound Phip
Length = 258
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 60 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 118
>pdb|1ERE|A Chain A, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|B Chain B, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|C Chain C, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|D Chain D, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|E Chain E, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|F Chain F, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|2OUZ|A Chain A, Crystal Structure Of Estrogen Receptor Alpha-Lasofoxifene
Complex
Length = 253
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 56 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 114
>pdb|3DT3|A Chain A, Human Estrogen Receptor Alpha Lbd With Gw368
pdb|3DT3|B Chain B, Human Estrogen Receptor Alpha Lbd With Gw368
pdb|2YJA|B Chain B, Stapled Peptides Binding To Estrogen Receptor Alpha
Length = 255
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 60 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 118
>pdb|2QA8|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With Genistein
Length = 258
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 60 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 118
>pdb|2IOK|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 1d
pdb|2IOK|B Chain B, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 1d
Length = 254
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 56 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 114
>pdb|1QKU|A Chain A, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|1QKU|B Chain B, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|1QKU|C Chain C, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
Length = 250
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 56 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 114
>pdb|2QXS|A Chain A, Crystal Structure Of Antagonizing Mutant 536s Of The
Estrogen Receptor Alpha Ligand Binding Domain Complexed
To Raloxifene
pdb|2QXS|B Chain B, Crystal Structure Of Antagonizing Mutant 536s Of The
Estrogen Receptor Alpha Ligand Binding Domain Complexed
To Raloxifene
Length = 258
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 60 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 118
>pdb|3HLV|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And
16-Alpha-Hydroxy-Estrone ((8s,9r,13
16r)-3,16-Dihydroxy-13-Methyl-7,8,9,11,12,14,15,
16-Octahyd Cyclopenta[a]phenanthren-17-One
pdb|3HLV|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And
16-Alpha-Hydroxy-Estrone ((8s,9r,13
16r)-3,16-Dihydroxy-13-Methyl-7,8,9,11,12,14,15,
16-Octahyd Cyclopenta[a]phenanthren-17-One
Length = 253
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 59 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 117
>pdb|3L03|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Binding Domain In Complex With A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide And
Estetrol (Estra-1,3,5(10)-Triene-3,15 Alpha,
16alpha,17beta-Tetrol)
pdb|3L03|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Binding Domain In Complex With A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide And
Estetrol (Estra-1,3,5(10)-Triene-3,15 Alpha,
16alpha,17beta-Tetrol)
Length = 253
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 59 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 117
>pdb|1PCG|A Chain A, Helix-Stabilized Cyclic Peptides As Selective Inhibitors
Of Steroid Receptor-Coactivator Interactions
pdb|1PCG|B Chain B, Helix-Stabilized Cyclic Peptides As Selective Inhibitors
Of Steroid Receptor-Coactivator Interactions
pdb|2I0J|A Chain A, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0J|B Chain B, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0J|C Chain C, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0J|D Chain D, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
Length = 244
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 53 HMINWAKRVPGFVDLTLHDQVHLLESAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 111
>pdb|1SJ0|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With The Antagonist Ligand 4-d
pdb|1XP1|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 15
pdb|1XP6|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 16
pdb|1XP9|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 18
pdb|1XPC|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 19
pdb|1YIM|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 4
pdb|1YIN|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 3f
Length = 248
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 50 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 108
>pdb|1L2I|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|1L2I|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
Length = 261
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 63 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 121
>pdb|2BJ4|A Chain A, Estrogen Receptor Alpha Lbd In Complex With A
Phage-Display Derived Peptide Antagonist
pdb|2JF9|A Chain A, Estrogen Receptor Alpha Lbd In Complex With A Tamoxifen-
Specific Peptide Antagonist
pdb|2JF9|B Chain B, Estrogen Receptor Alpha Lbd In Complex With A Tamoxifen-
Specific Peptide Antagonist
pdb|2JF9|C Chain C, Estrogen Receptor Alpha Lbd In Complex With A Tamoxifen-
Specific Peptide Antagonist
pdb|2JFA|A Chain A, Estrogen Receptor Alpha Lbd In Complex With An Affinity-
Selected Corepressor Peptide
Length = 252
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 75 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 133
>pdb|2IOG|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 11f
Length = 246
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 48 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 106
>pdb|1G50|A Chain A, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
pdb|1G50|B Chain B, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
pdb|1G50|C Chain C, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
Length = 247
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 53 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 111
>pdb|1GWQ|A Chain A, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With Raloxifene Core And Tif2 Nrbox2 Peptide
pdb|1GWQ|B Chain B, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With Raloxifene Core And Tif2 Nrbox2 Peptide
Length = 248
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 56 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 114
>pdb|2JFA|B Chain B, Estrogen Receptor Alpha Lbd In Complex With An Affinity-
Selected Corepressor Peptide
pdb|2BJ4|B Chain B, Estrogen Receptor Alpha Lbd In Complex With A
Phage-Display Derived Peptide Antagonist
Length = 252
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 75 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 133
>pdb|4DMA|A Chain A, Crystal Structure Of Era Lbd In Complex With Ru100132
pdb|4DMA|B Chain B, Crystal Structure Of Era Lbd In Complex With Ru100132
Length = 247
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 54 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 112
>pdb|1GWR|A Chain A, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17beta-Oestradiol And Tif2 Nrbox3 Peptide
pdb|1GWR|B Chain B, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17beta-Oestradiol And Tif2 Nrbox3 Peptide
Length = 245
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 52 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 110
>pdb|2NXX|E Chain E, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|F Chain F, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|G Chain G, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|H Chain H, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
Length = 248
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR---LTTDSSLTFSDGMY 229
+VQ +VEFAKR+PGF L ++DQ+ L+K E+ + ++R + TDS L ++ Y
Sbjct: 64 TVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARRYDVQTDSILFVNNQPY 121
>pdb|1X7E|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Complexed
With Way-244
pdb|1X7E|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Complexed
With Way-244
pdb|1X7R|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Complexed
With Genistein
Length = 245
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AKRVPGF DL+ DQ+ L++ + E L IG V R + L F+ + + R Q
Sbjct: 52 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPVKLLFAPNLLLDRNQ 110
>pdb|3UP0|A Chain A, Nuclear Receptor Daf-12 From Hookworm Ancylostoma
Ceylanicum In Complex With (25s)-Delta7-Dafachronic Acid
pdb|3UP0|B Chain B, Nuclear Receptor Daf-12 From Hookworm Ancylostoma
Ceylanicum In Complex With (25s)-Delta7-Dafachronic Acid
pdb|3UP3|A Chain A, Nuclear Receptor Daf-12 From Hookworm Ancylostoma
Ceylanicum In Complex With (25s)-Cholestenoic Acid
Length = 243
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
+++R V+ AKR+P F DLSQD + L+K G E+
Sbjct: 53 TMRRFVKMAKRLPAFNDLSQDGKFALLKGGMIEM 86
>pdb|3G6T|A Chain A, Gr Gamma Dna-Binding Domain:fkbp5 16bp Complex-34
pdb|3G6T|B Chain B, Gr Gamma Dna-Binding Domain:fkbp5 16bp Complex-34
Length = 91
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 5 FFRRSIQ-KQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDS 51
FF+R+++ +Q Y C C++ ++ R C CR++KCL GM+ ++
Sbjct: 28 FFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEA 75
>pdb|4FNE|A Chain A, X-Ray Crystal Structure Of The Ancestral 3-Keto Steroid
Receptor - Doc Complex
pdb|4FN9|A Chain A, X-Ray Crystal Structure Of The Ancestral 3-Keto Steroid
Receptor - Progesterone Complex
pdb|4FN9|B Chain B, X-Ray Crystal Structure Of The Ancestral 3-Keto Steroid
Receptor - Progesterone Complex
Length = 254
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVS-RLTTDSSLTFSDGMYVTRQQ 234
VV++AK +PGF +L DDQ+ LI+ MG +G+ S + T L F+ + Q+
Sbjct: 50 VVKWAKALPGFRNLHLDDQMTLIQYSWMGLMAFAMGWRSYKHTNGQMLYFAPDLIFNEQR 109
Query: 235 LE--VMYD 240
++ MYD
Sbjct: 110 MQQSAMYD 117
>pdb|1Z5X|E Chain E, Hemipteran Ecdysone Receptor Ligand-Binding Domain
Complexed With Ponasterone A
Length = 310
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR---LTTDSSLTFSDGMYVT 231
+VQ +VEF+KR+PGF L ++DQ+ L+K E+ + ++R TDS L F+ T
Sbjct: 128 TVQLIVEFSKRLPGFDKLIREDQIALLKACSSEVMMFRMARRYDAETDSIL-FATNQPYT 186
Query: 232 RQQLEV 237
R+ V
Sbjct: 187 RESYTV 192
>pdb|1R4I|A Chain A, Crystal Structure Of Androgen Receptor Dna-Binding
Domain Bound To A Direct Repeat Response Element
pdb|1R4I|B Chain B, Crystal Structure Of Androgen Receptor Dna-Binding
Domain Bound To A Direct Repeat Response Element
Length = 105
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 5 FFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMS 48
FF+R+ + + +Y C C + + R C CR +KC GM+
Sbjct: 33 FFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMT 76
>pdb|1OSV|A Chain A, Structural Basis For Bile Acid Binding And Activation Of
The Nuclear Receptor Fxr
pdb|1OSV|B Chain B, Structural Basis For Bile Acid Binding And Activation Of
The Nuclear Receptor Fxr
Length = 230
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIK 202
T VQ +VEF KR+PGF L +DQ+ L+K
Sbjct: 50 TSHVQILVEFTKRLPGFQTLDHEDQIALLK 79
>pdb|1OT7|A Chain A, Structural Basis For 3-Deoxy-Cdca Binding And Activation
Of Fxr
pdb|1OT7|B Chain B, Structural Basis For 3-Deoxy-Cdca Binding And Activation
Of Fxr
Length = 229
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIK 202
T VQ +VEF KR+PGF L +DQ+ L+K
Sbjct: 50 TSHVQILVEFTKRLPGFQTLDHEDQIALLK 79
>pdb|1HG4|A Chain A, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|B Chain B, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|C Chain C, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|D Chain D, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|E Chain E, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|F Chain F, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
Length = 279
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVS 214
++VE+A+ +P F + DDQ+IL+K + EL I V+
Sbjct: 62 QMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVA 98
>pdb|3HC6|A Chain A, Fxr With Src1 And Gsk088
Length = 232
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 172 VTPSVQRVVEFAKRVPGFCDLSQDDQLILIK 202
T VQ +VEF K++PGF L +DQ+ L+K
Sbjct: 51 ATNHVQVLVEFTKKLPGFQTLDHEDQIALLK 81
>pdb|3GD2|A Chain A, Isoxazole Ligand Bound To Farnesoid X Receptor (Fxr)
Length = 229
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 172 VTPSVQRVVEFAKRVPGFCDLSQDDQLILIK 202
T VQ +VEF K++PGF L +DQ+ L+K
Sbjct: 48 ATNHVQVLVEFTKKLPGFQTLDHEDQIALLK 78
>pdb|3P89|A Chain A, Fxr Bound To A Quinolinecarboxylic Acid
Length = 229
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIK 202
T VQ +VEF K++PGF L +DQ+ L+K
Sbjct: 49 TNHVQVLVEFTKKLPGFQTLDHEDQIALLK 78
>pdb|3P88|A Chain A, Fxr Bound To Isoquinolinecarboxylic Acid
Length = 229
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 172 VTPSVQRVVEFAKRVPGFCDLSQDDQLILIK 202
T VQ +VEF K++PGF L +DQ+ L+K
Sbjct: 48 ATNHVQVLVEFTKKLPGFQTLDHEDQIALLK 78
>pdb|1OSH|A Chain A, A Chemical, Genetic, And Structural Analysis Of The
Nuclear Bile Acid Receptor Fxr
Length = 232
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 172 VTPSVQRVVEFAKRVPGFCDLSQDDQLILIK 202
T VQ +VEF K++PGF L +DQ+ L+K
Sbjct: 51 ATNHVQVLVEFTKKLPGFQTLDHEDQIALLK 81
>pdb|3FXV|A Chain A, Identification Of An N-Oxide Pyridine Gw4064 Analogue As A
Potent Fxr Agonist
pdb|3OKH|A Chain A, Crystal Structure Of Human Fxr In Complex With
2-(4-Chlorophenyl)-1-
[(1s)-1-Cyclohexyl-2-(Cyclohexylamino)-2-Oxoethyl]-1h-
Benzimidazole- 6-Carboxylic Acid
pdb|3OKI|A Chain A, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-1h-Benzimidazol-1-Yl]-N,
2-Dicyclohexylethanamide
pdb|3OKI|C Chain C, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-1h-Benzimidazol-1-Yl]-N,
2-Dicyclohexylethanamide
pdb|3OLF|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Methylbenzoic Acid
pdb|3OLF|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Methylbenzoic Acid
pdb|3OMK|A Chain A, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-5,
6-Difluoro-1h-Benzimidazol-1-Yl]-2-Cyclohexyl-N-(2-
Methylphenyl)ethanamide
pdb|3OMK|C Chain C, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-5,
6-Difluoro-1h-Benzimidazol-1-Yl]-2-Cyclohexyl-N-(2-
Methylphenyl)ethanamide
pdb|3OMM|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Fluorobenzoic Acid
pdb|3OMM|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Fluorobenzoic Acid
pdb|3OOF|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)benzoic Acid
pdb|3OOF|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)benzoic Acid
pdb|3OOK|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3,5-Difluorobenzoic Acid
pdb|3OOK|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3,5-Difluorobenzoic Acid
Length = 233
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 172 VTPSVQRVVEFAKRVPGFCDLSQDDQLILIK 202
T VQ +VEF K++PGF L +DQ+ L+K
Sbjct: 52 ATNHVQVLVEFTKKLPGFQTLDHEDQIALLK 82
>pdb|3L1B|A Chain A, Complex Structure Of Fxr Ligand-Binding Domain With A
Tetrahydroazepinoindole Compound
Length = 233
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 172 VTPSVQRVVEFAKRVPGFCDLSQDDQLILIK 202
T VQ +VEF K++PGF L +DQ+ L+K
Sbjct: 52 ATNHVQVLVEFTKKLPGFQTLDHEDQIALLK 82
>pdb|3HC5|A Chain A, Fxr With Src1 And Gsk826
pdb|3RVF|A Chain A, Fxr With Src1 And Gsk2034
Length = 232
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 172 VTPSVQRVVEFAKRVPGFCDLSQDDQLILIK 202
T VQ +VEF K++PGF L +DQ+ L+K
Sbjct: 51 ATNHVQVLVEFTKKLPGFQTLDHEDQIALLK 81
>pdb|3BEJ|A Chain A, Structure Of Human Fxr In Complex With Mfa-1 And Co-
Activator Peptide
pdb|3BEJ|B Chain B, Structure Of Human Fxr In Complex With Mfa-1 And Co-
Activator Peptide
Length = 238
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 172 VTPSVQRVVEFAKRVPGFCDLSQDDQLILIK 202
T VQ +VEF K++PGF L +DQ+ L+K
Sbjct: 57 ATNHVQVLVEFTKKLPGFQTLDHEDQIALLK 87
>pdb|3FLI|A Chain A, Discovery Of Xl335, A Highly Potent, Selective And Orally-
Active Agonist Of The Farnesoid X Receptor (Fxr)
Length = 231
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 172 VTPSVQRVVEFAKRVPGFCDLSQDDQLILIK 202
T VQ +VEF K++PGF L +DQ+ L+K
Sbjct: 50 ATNHVQVLVEFTKKLPGFQTLDHEDQIALLK 80
>pdb|3RUT|A Chain A, Fxr With Src1 And Gsk359
pdb|3RUU|A Chain A, Fxr With Src1 And Gsk237
Length = 229
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 172 VTPSVQRVVEFAKRVPGFCDLSQDDQLILIK 202
T VQ +VEF K++PGF L +DQ+ L+K
Sbjct: 48 ATNHVQVLVEFTKKLPGFQTLDHEDQIALLK 78
>pdb|3DCT|A Chain A, Fxr With Src1 And Gw4064
pdb|3DCU|A Chain A, Fxr With Src1 And Gsk8062
Length = 235
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 172 VTPSVQRVVEFAKRVPGFCDLSQDDQLILIK 202
T VQ +VEF K++PGF L +DQ+ L+K
Sbjct: 54 ATNHVQVLVEFTKKLPGFQTLDHEDQIALLK 84
>pdb|1NHZ|A Chain A, Crystal Structure Of The Antagonist Form Of Glucocorticoid
Receptor
pdb|1P93|A Chain A, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
pdb|1P93|B Chain B, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
pdb|1P93|C Chain C, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
pdb|1P93|D Chain D, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
Length = 280
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVS-RLTTDSSLTFSDGMYVT 231
V V++AK +PGF +L DDQ+ L++ M +G+ S R ++ + L F+ + +
Sbjct: 74 VIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDLIIN 133
Query: 232 RQQLEV--MYD 240
Q++ + MYD
Sbjct: 134 EQRMTLPDMYD 144
>pdb|1M2Z|A Chain A, Crystal Structure Of A Dimer Complex Of The Human
Glucocorticoid Receptor Ligand-Binding Domain Bound To
Dexamethasone And A Tif2 Coactivator Motif
pdb|1M2Z|D Chain D, Crystal Structure Of A Dimer Complex Of The Human
Glucocorticoid Receptor Ligand-Binding Domain Bound To
Dexamethasone And A Tif2 Coactivator Motif
Length = 257
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVS-RLTTDSSLTFSDGMYVT 231
V V++AK +PGF +L DDQ+ L++ M +G+ S R ++ + L F+ + +
Sbjct: 51 VIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDLIIN 110
Query: 232 RQQLEV--MYD 240
Q++ + MYD
Sbjct: 111 EQRMTLPCMYD 121
>pdb|3BQD|A Chain A, Doubling The Size Of The Glucocorticoid Receptor Ligand
Binding Pocket By Deacylcortivazol
Length = 255
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVS-RLTTDSSLTFSDGMYVT 231
V V++AK +PGF +L DDQ+ L++ M +G+ S R ++ + L F+ + +
Sbjct: 49 VIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDLIIN 108
Query: 232 RQQLEV--MYD 240
Q++ + MYD
Sbjct: 109 EQRMTLPCMYD 119
>pdb|3H52|A Chain A, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
pdb|3H52|B Chain B, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
pdb|3H52|C Chain C, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
pdb|3H52|D Chain D, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
Length = 254
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVS-RLTTDSSLTFSDGMYVT 231
V V++AK +PGF +L DDQ+ L++ M +G+ S R ++ + L F+ + +
Sbjct: 48 VIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDLIIN 107
Query: 232 RQQLEV--MYD 240
Q++ + MYD
Sbjct: 108 EQRMTLPDMYD 118
>pdb|1VJB|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With 4-
Hydroxytamoxifen
pdb|1VJB|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With 4-
Hydroxytamoxifen
pdb|1TFC|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With A
Steroid Receptor Coactivator-1 Peptide
pdb|1TFC|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With A
Steroid Receptor Coactivator-1 Peptide
pdb|2P7A|A Chain A, Crystal Structure Of Estrogen Related Receptor G In
Complex With 3-Methyl Phenol
pdb|2P7G|A Chain A, X-Ray Structure Of Estrogen Related Receptor G In Complex
With Bisphenol A.
pdb|2P7Z|A Chain A, Estrogen Related Receptor Gamma In Complex With 4-Hydroxy-
Tamoxifen
Length = 251
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWI-GYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AK +PGF LS DQ+ L++ + E+ I G V R L+ + L ++D + Q
Sbjct: 72 IIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQ 129
>pdb|1S9Q|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
4-Hydroxytamoxifen
pdb|1S9Q|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
4-Hydroxytamoxifen
Length = 251
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWI-GYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AK +PGF LS DQ+ L++ + E+ I G V R L+ + L ++D + Q
Sbjct: 72 IIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQ 129
>pdb|3MNE|A Chain A, Crystal Structure Of The Agonist Form Of Mouse
Glucocorticoid Receptor Stabilized By F608s Mutation At
1.96a
Length = 261
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVS-RLTTDSSLTFSDGMYVT 231
V V++AK +PGF +L DDQ+ L++ M +G+ S R + + L F+ + +
Sbjct: 55 VIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQASGNLLCFAPDLIIN 114
Query: 232 RQQLEV--MYD 240
Q++ + MYD
Sbjct: 115 EQRMTLPCMYD 125
>pdb|2E2R|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With Bisphenol A
pdb|2ZAS|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With 4-Alpha-Cumylphenol,
A Bisphenol A Derivative
pdb|2ZBS|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Apo Form
pdb|2ZKC|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With Bisphenol Z
Length = 244
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWI-GYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AK +PGF LS DQ+ L++ + E+ I G V R L+ + L ++D + Q
Sbjct: 64 IIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQ 121
>pdb|3CLD|A Chain A, Ligand Binding Domain Of The Glucocorticoid Receptor
Complexed With Fluticazone Furoate
pdb|3CLD|B Chain B, Ligand Binding Domain Of The Glucocorticoid Receptor
Complexed With Fluticazone Furoate
pdb|3K23|A Chain A, Glucocorticoid Receptor With Bound D-Prolinamide 11
pdb|3K23|B Chain B, Glucocorticoid Receptor With Bound D-Prolinamide 11
pdb|3K23|C Chain C, Glucocorticoid Receptor With Bound D-Prolinamide 11
pdb|3K22|A Chain A, Glucocorticoid Receptor With Bound Alaninamide 10 With
Tif2 Peptide
pdb|3K22|B Chain B, Glucocorticoid Receptor With Bound Alaninamide 10 With
Tif2 Peptide
Length = 259
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 10/73 (13%)
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIK------MGFFELWIGYVSRLTTDSSLTFSDGMY 229
V V++AK +PGF +L DDQ+ L++ M F W Y R ++ + L F+ +
Sbjct: 53 VIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMYLMAFALGWRSY--RQSSANLLCFAPDLI 110
Query: 230 VTRQQLEV--MYD 240
+ Q++ + MYD
Sbjct: 111 INEQRMTLPGMYD 123
>pdb|1S9P|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|C Chain C, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|D Chain D, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
Length = 227
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWI-GYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AK +PGF LS DQ+ L++ + E+ I G V R L+ + L ++D + Q
Sbjct: 48 IIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQ 105
>pdb|1KV6|A Chain A, X-Ray Structure Of The Orphan Nuclear Receptor Err3
Ligand- Binding Domain In The Constitutively Active
Conformation
pdb|1KV6|B Chain B, X-Ray Structure Of The Orphan Nuclear Receptor Err3
Ligand- Binding Domain In The Constitutively Active
Conformation
pdb|2GP7|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|B Chain B, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|C Chain C, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|D Chain D, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GPO|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Synthetic Peptide From Rip140
pdb|2GPP|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Rip140 Peptide And Synthetic Ligand
Gsk4716
pdb|2GPP|B Chain B, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Rip140 Peptide And Synthetic Ligand
Gsk4716
pdb|2GPU|A Chain A, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen
pdb|2GPV|A Chain A, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|B Chain B, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|C Chain C, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|D Chain D, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|E Chain E, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|F Chain F, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
Length = 230
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWI-GYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AK +PGF LS DQ+ L++ + E+ I G V R L+ + L ++D + Q
Sbjct: 51 IIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQ 108
>pdb|3E7C|A Chain A, Glucocorticoid Receptor Lbd Bound To Gsk866
pdb|3E7C|B Chain B, Glucocorticoid Receptor Lbd Bound To Gsk866
Length = 257
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 10/73 (13%)
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIK------MGFFELWIGYVSRLTTDSSLTFSDGMY 229
V V++AK +PGF +L DDQ+ L++ M F W Y R ++ + L F+ +
Sbjct: 51 VIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMYLMAFALGWRSY--RQSSANLLCFAPDLI 108
Query: 230 VTRQQLEV--MYD 240
+ Q++ + MYD
Sbjct: 109 INEQRMTLPGMYD 121
>pdb|2EWP|A Chain A, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|B Chain B, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|C Chain C, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|D Chain D, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|E Chain E, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
Length = 226
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWI-GYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AK +PGF LS DQ+ L++ + E+ I G V R L+ + L ++D + Q
Sbjct: 47 IIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQ 104
>pdb|4E2J|A Chain A, X-Ray Crystal Structure Of The Ancestral Glucocorticoid
Receptor 2 Ligand Binding Domain In Complex With
Mometasone Furoate And Tif-2 Coactivator Fragment
pdb|4E2J|B Chain B, X-Ray Crystal Structure Of The Ancestral Glucocorticoid
Receptor 2 Ligand Binding Domain In Complex With
Mometasone Furoate And Tif-2 Coactivator Fragment
Length = 250
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVS-RLTTDSSLTFSDGMYVT 231
V V++AK +PGF +L DDQ+ L++ M +G+ S + + + L F+ + +
Sbjct: 45 VVSAVKWAKALPGFRNLHLDDQMTLLQYSWMSLMAFSLGWRSYKQSNGNMLCFAPDLVIN 104
Query: 232 --RQQLEVMYD 240
R QL MYD
Sbjct: 105 EERMQLPYMYD 115
>pdb|3MNO|A Chain A, Crystal Structure Of The Agonist Form Of Mouse
Glucocorticoid Receptor Stabilized By (A611v, F608s)
Mutations At 1.55a
Length = 261
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVS-RLTTDSSLTFSDGMYVT 231
V V++AK +PGF +L DDQ+ L++ + L + G+ S R + + L F+ + +
Sbjct: 55 VIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMVFALGWRSYRQASGNLLCFAPDLIIN 114
Query: 232 RQQLEV--MYD 240
Q++ + MYD
Sbjct: 115 EQRMTLPCMYD 125
>pdb|3GN8|A Chain A, X-Ray Crystal Structure Of Ancgr2 In Complex With
Dexamethasone
pdb|3GN8|B Chain B, X-Ray Crystal Structure Of Ancgr2 In Complex With
Dexamethasone
Length = 249
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVS-RLTTDSSLTFSDGMYVT 231
V V++AK +PGF +L DDQ+ L++ M +G+ S + + + L F+ + +
Sbjct: 43 VVSAVKWAKALPGFRNLHLDDQMTLLQYSWMSLMAFSLGWRSYKQSNGNMLCFAPDLVIN 102
Query: 232 --RQQLEVMYD 240
R QL MYD
Sbjct: 103 EERMQLPYMYD 113
>pdb|2Q1H|A Chain A, Ancestral Corticoid Receptor In Complex With Aldosterone
pdb|2Q1V|A Chain A, Ancestral Corticoid Receptor In Complex With Cortisol
Length = 250
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVS-RLTTDSSLTFSDGMYVT--R 232
VV++AK +PGF +L DDQ+ LI+ M +G+ S + T L F+ + R
Sbjct: 46 VVKWAKALPGFRNLHLDDQMTLIQYSWMSLMAFSLGWRSYKHTNGQMLYFAPDLIFNEER 105
Query: 233 QQLEVMYD 240
Q MYD
Sbjct: 106 MQQSAMYD 113
>pdb|2Q3Y|A Chain A, Ancestral Corticiod Receptor In Complex With Doc
Length = 249
Score = 33.5 bits (75), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVS-RLTTDSSLTFSDGMYVT--R 232
VV++AK +PGF +L DDQ+ LI+ M +G+ S + T L F+ + R
Sbjct: 46 VVKWAKALPGFRNLHLDDQMTLIQYSWMSLMAFSLGWRSYKHTNGQMLYFAPDLIFNEER 105
Query: 233 QQLEVMYD 240
Q MYD
Sbjct: 106 MQQSAMYD 113
>pdb|3MNP|A Chain A, Crystal Structure Of The Agonist Form Of Mouse
Glucocorticoid Receptor Stabilized By (A611v, V708a,
E711g) Mutations At 1.50a
Length = 261
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVS-RLTTDSSLTFSDGMYVT 231
V V++AK +PGF +L DDQ+ L++ + L + G+ S R + + L F+ + +
Sbjct: 55 VIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMVFALGWRSYRQASGNLLCFAPDLIIN 114
Query: 232 RQQLEV--MYD 240
Q++ + MYD
Sbjct: 115 EQRMTLPCMYD 125
>pdb|1PZL|A Chain A, Crystal Structure Of Hnf4a Lbd In Complex With The Ligand
And The Coactivator Src-1 Peptide
Length = 237
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSD 226
+VE+AK +P FC+L DDQ+ L++ E L +G R S+ F D
Sbjct: 57 LVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKR-----SMVFKD 100
>pdb|3FS1|A Chain A, Crystal Structure Of Hnf4a Lbd In Complex With The Ligand
And The Coactivator Pgc-1a Fragment
Length = 230
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSD 226
+VE+AK +P FC+L DDQ+ L++ E L +G R S+ F D
Sbjct: 51 LVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKR-----SMVFKD 94
>pdb|1M7W|A Chain A, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|B Chain B, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|C Chain C, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|D Chain D, Hnf4a Ligand Binding Domain With Bound Fatty Acid
Length = 250
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSDGMYV 230
+VE+AK +P FC+L DDQ+ L++ E L +G R S+ F D + +
Sbjct: 57 LVEWAKYIPAFCELLLDDQVALLRAHAGEHLLLGATKR-----SMVFKDVLLL 104
>pdb|3LTX|A Chain A, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|B Chain B, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|C Chain C, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|D Chain D, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
Length = 243
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSLTFSDGMYVTR 232
++ +AK VPG+ DLS DQ+ LI+ + EL + + S SL F+ + + R
Sbjct: 51 HLINWAKNVPGYTDLSLSDQVHLIECCWMELLLLNCAFRSIEHGGKSLAFAPDLVLDR 108
>pdb|1GS4|A Chain A, Structural Basis For The Glucocorticoid Response In A
Mutant Human Androgen Receptor (Arccr) Derived From An
Androgen-Independent Prostate Cancer
Length = 248
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVSRLTTDSSLTF 224
VV++AK +PGF +L DDQ+ +I+ MG +G+ S +S + +
Sbjct: 45 HVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLY 94
>pdb|2AM9|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Testosterone
pdb|2AMA|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Dihydrotestosterone
pdb|2AMB|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Tetrahydrogestrinone
pdb|2PNU|A Chain A, Crystal Structure Of Human Androgen Receptor
Ligand-Binding Domain In Complex With Em-5744
pdb|3V49|A Chain A, Structure Of Ar Lbd With Activator Peptide And Sarm
Inhibitor 1
Length = 266
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVSRLTTDSSLTF 224
VV++AK +PGF +L DDQ+ +I+ MG +G+ S +S + +
Sbjct: 61 HVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLY 110
>pdb|1E3G|A Chain A, Human Androgen Receptor Ligand Binding In Complex With The
Ligand Metribolone (R1881)
Length = 263
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVSRLTTDSSLTF 224
VV++AK +PGF +L DDQ+ +I+ MG +G+ S +S + +
Sbjct: 58 HVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLY 107
>pdb|1I38|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain T877a Mutant Complex With
Dihydrotestosterone
pdb|1XNN|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain T877a Mutant Complex With (3a-Alpha-,4-
Alpha
7-Alpha-,7a-Alpha-)-3a,4,7,7a-Tetrahydro-2-(4-Nitro-
1-Naphthalenyl)-4,7-Ethano-1h-Isoindole-1,3(2h)-Dione
Length = 260
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVSRLTTDSSLTF 224
VV++AK +PGF +L DDQ+ +I+ MG +G+ S +S + +
Sbjct: 55 HVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLY 104
>pdb|1I37|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With Dihydrotestosterone
pdb|2IHQ|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domian Complex With An N-Aryl-
Hydroxybicyclohydantoin
pdb|2NW4|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With Bms-564929
pdb|3G0W|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With An N-Aryl-Oxazolidin 2-Imine
Inhibitor
Length = 260
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVSRLTTDSSLTF 224
VV++AK +PGF +L DDQ+ +I+ MG +G+ S +S + +
Sbjct: 55 HVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLY 104
>pdb|1XJ7|A Chain A, Complex Androgen Receptor Lbd And Rac3 Peptide
pdb|2Q7I|A Chain A, The Wild Type Androgen Receptor Ligand Binding Domain
Bound With Testosterone And An Ar 20-30 Peptide
pdb|2Q7J|A Chain A, The Wild Type Androgen Receptor Ligand Binding Domain
Bound With Testosterone And A Tif2 Box 3 Coactivator
Peptide 740-753
Length = 257
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVSRLTTDSSLTF 224
VV++AK +PGF +L DDQ+ +I+ MG +G+ S +S + +
Sbjct: 52 HVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLY 101
>pdb|1T73|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxff Motif
pdb|1T74|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Wxxlf Motif
pdb|1T76|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Wxxvw Motif
pdb|1T79|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxlw Motif
pdb|1T7F|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Lxxll Motif
pdb|1T7M|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxyf Motif
pdb|1T7R|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxlf Motif
pdb|1T7T|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With 5-Alpha Dihydrotestosterone
Length = 269
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVSRLTTDSSLTF 224
VV++AK +PGF +L DDQ+ +I+ MG +G+ S +S + +
Sbjct: 64 HVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLY 113
>pdb|1LV2|A Chain A, Hepatocyte Nuclear Factor 4 Is A Transcription Factor That
Constitutively Binds Fatty Acids
Length = 229
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQLE 236
+VE+AK +P FC+L DDQ+ L++ E L +G R + L + + R E
Sbjct: 51 LVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMYKDILLLGNNYVIHRNSCE 110
Query: 237 V 237
V
Sbjct: 111 V 111
>pdb|2AX6|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain T877a Mutant In Complex With Hydroxyflutamide
pdb|2AX7|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain T877a Mutant In Complex With S-1
Length = 256
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVSRLTTDSSLTF 224
VV++AK +PGF +L DDQ+ +I+ MG +G+ S +S + +
Sbjct: 51 HVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLY 100
>pdb|2Q7K|A Chain A, The Androgen Receptor Prostate Cancer Mutant H874y Ligand
Binding Domain Bound With Testosterone And An Ar 20-30
Peptide
pdb|2Q7L|A Chain A, The Androgen Receptor Prostate Cancer Mutant H874y Ligand
Binding Domain Bound With Testosterone And A Tif2 Box3
Coactivator Peptide 740-753
Length = 257
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVSRLTTDSSLTF 224
VV++AK +PGF +L DDQ+ +I+ MG +G+ S +S + +
Sbjct: 52 HVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLY 101
>pdb|1T5Z|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain (Lbd) With Dht And A Peptide Derived From Its
Physiological Coactivator Ara70
pdb|1T63|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain With Dht And A Peptide Derived From Its
Physiological Coactivator Grip1 Nr Box3
pdb|1T65|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain With Dht And A Peptide Derived Form Its
Physiological Coactivator Grip1 Nr Box 2 Bound In A Non-
Helical Conformation
pdb|2PIO|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIP|L Chain L, Androgen Receptor Lbd With Small Molecule
pdb|2PIQ|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIR|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIT|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIU|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIV|A Chain A, Androgen Receptor With Small Molecule
pdb|2PIW|A Chain A, Androgen Receptor With Small Molecule
pdb|2PIX|A Chain A, Ar Lbd With Small Molecule
pdb|2PKL|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2QPY|A Chain A, Ar Lbd With Small Molecule
Length = 251
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVSRLTTDSSLTF 224
VV++AK +PGF +L DDQ+ +I+ MG +G+ S +S + +
Sbjct: 46 HVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLY 95
>pdb|2AX9|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With R-3
pdb|2AXA|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With S-1
pdb|2YLO|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|2YLP|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|2YLQ|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|3ZQT|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|4HLW|A Chain A, Targeting The Binding Function 3 (bf3) Site Of The Human
Androgen Receptor Through Virtual Screening. 2.
Development Of 2-((2- Phenoxyethyl)
Thio)-1h-benzoimidazole Derivatives
Length = 256
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVSRLTTDSSLTF 224
VV++AK +PGF +L DDQ+ +I+ MG +G+ S +S + +
Sbjct: 51 HVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLY 100
>pdb|3RLL|A Chain A, Crystal Structure Of The T877a Androgen Receptor Ligand
Binding Domain In Complex With
(S)-N-(4-Cyano-3-(Trifluoromethyl)phenyl)-3-(4-
Cyanonaphthalen-1-Yloxy)-2-Hydroxy-2-Methylpropanamide
Length = 247
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVSRLTTDSSLTF 224
VV++AK +PGF +L DDQ+ +I+ MG +G+ S +S + +
Sbjct: 44 HVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLY 93
>pdb|3L3X|A Chain A, Crystal Structure Of Dht-Bound Androgen Receptor In
Complex With The First Motif Of Steroid Receptor
Coactivator 3
pdb|3L3Z|A Chain A, Crystal Structure Of Dht-Bound Androgen Receptor In
Complex With The Third Motif Of Steroid Receptor
Coactivator 3
Length = 250
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVSRLTTDSSLTF 224
VV++AK +PGF +L DDQ+ +I+ MG +G+ S +S + +
Sbjct: 46 HVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLY 95
>pdb|2HVC|A Chain A, The Crystal Structure Of Ligand-Binding Domain (Lbd) Of
Human Androgen Receptor In Complex With A Selective
Modulator Lgd2226
Length = 250
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVSRLTTDSSLTF 224
VV++AK +PGF +L DDQ+ +I+ MG +G+ S +S + +
Sbjct: 46 HVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLY 95
>pdb|2OZ7|A Chain A, Crystal Structure Of The Human Androgen Receptor T877a
Mutant Ligand- Binding Domain With Cyproterone Acetate
Length = 249
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVSRLTTDSSLTF 224
VV++AK +PGF +L DDQ+ +I+ MG +G+ S +S + +
Sbjct: 44 HVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLY 93
>pdb|1XOW|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With An Androgen Receptor Nh2-
Terminal Peptide, Ar20-30, And R1881
pdb|1XQ3|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With R1881
pdb|2AO6|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With Tif2(Iii) 740-753 Peptide And
R1881
pdb|3B5R|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm C-31
pdb|3B65|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-24
pdb|3B66|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-21
pdb|3B67|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm C-23
pdb|3B68|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-4
pdb|2YHD|A Chain A, Human Androgen Receptor In Complex With Af2 Small Molecule
Inhibitor
pdb|3V4A|A Chain A, Structure Of Ar Lbd With Activator Peptide And Sarm
Inhibitor 2
Length = 249
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVSRLTTDSSLTF 224
VV++AK +PGF +L DDQ+ +I+ MG +G+ S +S + +
Sbjct: 44 HVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLY 93
>pdb|2AX8|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain W741l Mutant In Complex With S-1
Length = 256
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVSRLTTDSSLTF 224
VV++AK +PGF +L DDQ+ +I+ MG +G+ S +S + +
Sbjct: 51 HVVKWAKALPGFRNLHVDDQMAVIQYSLMGLMVFAMGWRSFTNVNSRMLY 100
>pdb|3RLJ|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-22
Length = 247
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVSRLTTDSSLTF 224
VV++AK +PGF +L DDQ+ +I+ MG +G+ S +S + +
Sbjct: 44 HVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLY 93
>pdb|2Z4J|A Chain A, Crystal Structure Of Ar Lbd With Shp Peptide Nr Box 2
Length = 248
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVSRLTTDSSLTF 224
VV++AK +PGF +L DDQ+ +I+ MG +G+ S +S + +
Sbjct: 44 HVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLY 93
>pdb|1Z95|A Chain A, Crystal Structure Of The Androgen Receptor Ligand-Binding
Domain W741l Mutant Complex With R-Bicalutamide
Length = 246
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVSRLTTDSSLTF 224
VV++AK +PGF +L DDQ+ +I+ MG +G+ S +S + +
Sbjct: 43 HVVKWAKALPGFRNLHVDDQMAVIQYSLMGLMVFAMGWRSFTNVNSRMLY 92
>pdb|2NXX|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|B Chain B, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|C Chain C, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
Length = 235
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
++V++AK VP F L DQ+ L++ G+ EL I S + ++ + G+ V +
Sbjct: 52 QLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNK 108
>pdb|1XNX|A Chain A, Crystal Structure Of Constitutive Androstane Receptor
pdb|1XNX|B Chain B, Crystal Structure Of Constitutive Androstane Receptor
Length = 256
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTT 218
L L FA T VQ++++F K +P F L+ +DQ+ L+K E I ++S TT
Sbjct: 63 LPLLTHFADINTFMVQQIIKFTKDLPLFRSLTMEDQISLLKGAAVE--ILHISLNTT 117
>pdb|1XLS|E Chain E, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|F Chain F, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|G Chain G, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|H Chain H, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
Length = 242
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTT 218
L L FA T VQ++++F K +P F L+ +DQ+ L+K E I ++S TT
Sbjct: 49 LPLLTHFADINTFMVQQIIKFTKDLPLFRSLTMEDQISLLKGAAVE--ILHISLNTT 103
>pdb|2AA2|A Chain A, Mineralocorticoid Receptor With Bound Aldosterone
pdb|2AA5|A Chain A, Mineralocorticoid Receptor With Bound Progesterone
pdb|2AA5|B Chain B, Mineralocorticoid Receptor With Bound Progesterone
pdb|2AA7|A Chain A, Mineralocorticoid Receptor With Bound Deoxycorticosterone
Length = 275
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
+VV++AK +PGF +L +DQ+ LI+ + L
Sbjct: 70 QVVKWAKVLPGFKNLPLEDQITLIQYSWMSL 100
>pdb|2AA6|A Chain A, Mineralocorticoid Receptor S810l Mutant With Bound
Progesterone
pdb|2AA6|B Chain B, Mineralocorticoid Receptor S810l Mutant With Bound
Progesterone
pdb|2AAX|A Chain A, Mineralocorticoid Receptor Double Mutant With Bound
Cortisone
pdb|2AAX|B Chain B, Mineralocorticoid Receptor Double Mutant With Bound
Cortisone
pdb|2AB2|A Chain A, Mineralocorticoid Receptor Double Mutant With Bound
Spironolactone
pdb|2AB2|B Chain B, Mineralocorticoid Receptor Double Mutant With Bound
Spironolactone
Length = 275
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
+VV++AK +PGF +L +DQ+ LI+ + L
Sbjct: 70 QVVKWAKVLPGFKNLPLEDQITLIQYSWMSL 100
>pdb|3VHU|A Chain A, Mineralocorticoid Receptor Ligand-Binding Domain With
Spironolactone
Length = 294
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
+VV++AK +PGF +L +DQ+ LI+ + L
Sbjct: 89 QVVKWAKVLPGFKNLPLEDQITLIQYSWMSL 119
>pdb|3VHV|A Chain A, Mineralocorticoid Receptor Ligand-Binding Domain With
Non-Steroidal Antagonist
Length = 260
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
+VV++AK +PGF +L +DQ+ LI+ + L
Sbjct: 55 QVVKWAKVLPGFKNLPLEDQITLIQYSWMSL 85
>pdb|2A3I|A Chain A, Structural And Biochemical Mechanisms For The Specificity
Of Hormone Binding And Coactivator Assembly By
Mineralocorticoid Receptor
Length = 253
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
+VV++AK +PGF +L +DQ+ LI+ + L
Sbjct: 48 QVVKWAKVLPGFKNLPLEDQITLIQYSWMSL 78
>pdb|2W8Y|A Chain A, Ru486 Bound To The Progesterone Receptor In A Destabilized
Agonistic Conformation
pdb|2W8Y|B Chain B, Ru486 Bound To The Progesterone Receptor In A Destabilized
Agonistic Conformation
pdb|3ZR7|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZR7|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRA|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRA|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRB|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRB|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|4A2J|A Chain A, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In 11beta-
Substituted Steroids
pdb|4A2J|B Chain B, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In 11beta-
Substituted Steroids
pdb|4APU|A Chain A, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In
11beta-Substituted Steroid
pdb|4APU|B Chain B, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In
11beta-Substituted Steroid
Length = 260
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VV+++K +PGF +L DDQ+ LI+ + L +
Sbjct: 56 VVKWSKSLPGFRNLHIDDQITLIQYSWMSLMV 87
>pdb|1E3K|A Chain A, Human Progesteron Receptor Ligand Binding Domain In
Complex With The Ligand Metribolone (R1881)
pdb|1E3K|B Chain B, Human Progesteron Receptor Ligand Binding Domain In
Complex With The Ligand Metribolone (R1881)
pdb|3D90|A Chain A, Crystal Structure Of The Human Progesterone Receptor
Ligand- Binding Domain Bound To Levonorgestrel
pdb|3D90|B Chain B, Crystal Structure Of The Human Progesterone Receptor
Ligand- Binding Domain Bound To Levonorgestrel
Length = 258
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VV+++K +PGF +L DDQ+ LI+ + L +
Sbjct: 54 VVKWSKSLPGFRNLHIDDQITLIQYSWMSLMV 85
>pdb|1SR7|A Chain A, Progesterone Receptor Hormone Binding Domain With Bound
Mometasone Furoate
pdb|1SR7|B Chain B, Progesterone Receptor Hormone Binding Domain With Bound
Mometasone Furoate
pdb|1ZUC|B Chain B, Progesterone Receptor Ligand Binding Domain In Complex
With The Nonsteroidal Agonist Tanaproget
pdb|1ZUC|A Chain A, Progesterone Receptor Ligand Binding Domain In Complex
With The Nonsteroidal Agonist Tanaproget
Length = 259
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VV+++K +PGF +L DDQ+ LI+ + L +
Sbjct: 55 VVKWSKSLPGFRNLHIDDQITLIQYSWMSLMV 86
>pdb|1A28|A Chain A, Hormone-Bound Human Progesterone Receptor Ligand-Binding
Domain
pdb|1A28|B Chain B, Hormone-Bound Human Progesterone Receptor Ligand-Binding
Domain
pdb|2OVH|A Chain A, Progesterone Receptor With Bound Asoprisnil And A Peptide
From The Co-Repressor Smrt
pdb|2OVM|A Chain A, Progesterone Receptor With Bound Asoprisnil And A Peptide
From The Co-Repressor Ncor
pdb|3HQ5|A Chain A, Progesterone Receptor Bound To An Alkylpyrrolidine Ligand.
pdb|3HQ5|B Chain B, Progesterone Receptor Bound To An Alkylpyrrolidine Ligand
Length = 256
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VV+++K +PGF +L DDQ+ LI+ + L +
Sbjct: 52 VVKWSKSLPGFRNLHIDDQITLIQYSWMSLMV 83
>pdb|3G8O|A Chain A, Progesterone Receptor With Bound Pyrrolidine 1
pdb|3G8O|B Chain B, Progesterone Receptor With Bound Pyrrolidine 1
Length = 263
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VV+++K +PGF +L DDQ+ LI+ + L +
Sbjct: 59 VVKWSKSLPGFRNLHIDDQITLIQYSWMSLMV 90
>pdb|3KBA|A Chain A, Progesterone Receptor Bound To Sulfonamide Pyrrolidine
Partial Agonist
pdb|3KBA|B Chain B, Progesterone Receptor Bound To Sulfonamide Pyrrolidine
Partial Agonist
Length = 253
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VV+++K +PGF +L DDQ+ LI+ + L +
Sbjct: 49 VVKWSKSLPGFRNLHIDDQITLIQYSWMSLMV 80
>pdb|1SQN|A Chain A, Progesterone Receptor Ligand Binding Domain With Bound
Norethindrone
pdb|1SQN|B Chain B, Progesterone Receptor Ligand Binding Domain With Bound
Norethindrone
Length = 261
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VV+++K +PGF +L DDQ+ LI+ + L +
Sbjct: 57 VVKWSKSLPGFRNLHIDDQITLIQYSWMSLMV 88
>pdb|2FSZ|A Chain A, A Second Binding Site For Hydroxytamoxifen Within The
Coactivator-Binding Groove Of Estrogen Receptor Beta
pdb|2FSZ|B Chain B, A Second Binding Site For Hydroxytamoxifen Within The
Coactivator-Binding Groove Of Estrogen Receptor Beta
Length = 246
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AK++PGF +LS DQ+ L++ + E L +G + R + L F+ + + R +
Sbjct: 52 HMISWAKKIPGFVELSLFDQVRLLESSWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDE 110
>pdb|1Y9R|A Chain A, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1Y9R|B Chain B, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1YA3|A Chain A, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Progesterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1YA3|B Chain B, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Progesterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1YA3|C Chain C, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Progesterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
Length = 255
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIK 202
+VV++AK +PGF +L +DQ+ LI+
Sbjct: 50 QVVKWAKVLPGFKNLPLEDQITLIQ 74
>pdb|2ABI|A Chain A, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone
pdb|2ABI|B Chain B, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone
pdb|2ABI|C Chain C, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone
Length = 256
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIK 202
+VV++AK +PGF +L +DQ+ LI+
Sbjct: 51 QVVKWAKVLPGFKNLPLEDQITLIQ 75
>pdb|2OAX|A Chain A, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|B Chain B, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|C Chain C, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|D Chain D, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|E Chain E, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|F Chain F, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
Length = 256
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIK 202
+VV++AK +PGF +L +DQ+ LI+
Sbjct: 51 QVVKWAKVLPGFKNLPLEDQITLIQ 75
>pdb|1YY4|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
1-Chloro-6-(4-Hydroxy-Phenyl)-Naphthalen-2-Ol
pdb|1YY4|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
1-Chloro-6-(4-Hydroxy-Phenyl)-Naphthalen-2-Ol
pdb|1YYE|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-202196
pdb|1YYE|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-202196
Length = 268
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AK++PGF +LS DQ+ L++ + E L +G + R + L F+ + + R +
Sbjct: 46 HMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDE 104
>pdb|3RY9|A Chain A, Crystal Structure Of The Resurrected Ancestral
Glucocorticoid Receptor 1 In Complex With Doc
pdb|3RY9|B Chain B, Crystal Structure Of The Resurrected Ancestral
Glucocorticoid Receptor 1 In Complex With Doc
Length = 250
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 180 VEFAKRVPGFCDLSQDDQLILIK---MGFFELWIGYVSRLTTDSSLTF 224
V++AK +PGF +L DDQ+ L++ M +G+ S T+ ++ +
Sbjct: 47 VKWAKALPGFRNLHLDDQMTLLQYSWMSLMAFSLGWRSYQHTNGNMLY 94
>pdb|2I0G|A Chain A, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0G|B Chain B, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2JJ3|A Chain A, Estrogen Receptor Beta Ligand Binding Domain In Complex
With A Benzopyran Agonist
pdb|2JJ3|B Chain B, Estrogen Receptor Beta Ligand Binding Domain In Complex
With A Benzopyran Agonist
pdb|2Z4B|A Chain A, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
pdb|2Z4B|B Chain B, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
pdb|2QTU|A Chain A, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
pdb|2QTU|B Chain B, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
Length = 257
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AK++PGF +LS DQ+ L++ + E L +G + R + L F+ + + R +
Sbjct: 60 HMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDE 118
>pdb|1L2J|A Chain A, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With (R,
R)-5,11-Cis-Diethyl-5,6,11,12-Tetrahydrochrysene-2,
8-Diol
pdb|1L2J|B Chain B, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With (R,
R)-5,11-Cis-Diethyl-5,6,11,12-Tetrahydrochrysene-2,
8-Diol
Length = 271
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AK++PGF +LS DQ+ L++ + E L +G + R + L F+ + + R +
Sbjct: 74 HMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDE 132
>pdb|1QKN|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Antagonist Raloxifene
pdb|1HJ1|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Pure Antioestrogen Ici164,384
Length = 255
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AK++PGF +LS DQ+ L++ + E L +G + R + L F+ + + R +
Sbjct: 54 HMIGWAKKIPGFVELSLLDQVRLLESCWMEVLMVGLMWRSIDHPGKLIFAPDLVLDRDE 112
>pdb|2J7X|A Chain A, Structure Of Estradiol-bound Estrogen Receptor Beta Lbd In
Complex With Lxxll Motif From Ncoa5
pdb|2J7Y|A Chain A, Structure Of 17-Epiestriol-Bound Estrogen Receptor Beta
Lbd In Complex With Lxxll Motif From Ncoa5
Length = 255
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AK++PGF +LS DQ+ L++ + E L +G + R + L F+ + + R +
Sbjct: 54 HMIGWAKKIPGFVELSLLDQVRLLESCWMEVLMVGLMWRSIDHPGKLIFAPDLVLDRDE 112
>pdb|1NDE|A Chain A, Estrogen Receptor Beta With Selective Triazine Modulator
Length = 255
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AK++PGF +LS DQ+ L++ + E L +G + R + L F+ + + R +
Sbjct: 62 HMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDE 120
>pdb|1U9E|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-397
pdb|1U9E|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-397
pdb|1U3R|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-338
pdb|1U3R|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-338
Length = 241
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AK++PGF +LS DQ+ L++ + E L +G + R + L F+ + + R +
Sbjct: 48 HMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDE 106
>pdb|1ZAF|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
3-Bromo-6-Hydroxy-2-(4-Hydroxy-Phenyl)-Inden-1-One
pdb|1ZAF|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
3-Bromo-6-Hydroxy-2-(4-Hydroxy-Phenyl)-Inden-1-One
Length = 238
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AK++PGF +LS DQ+ L++ + E L +G + R + L F+ + + R +
Sbjct: 46 HMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDE 104
>pdb|1X76|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-697
pdb|1X76|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-697
pdb|1X78|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-244
pdb|1X78|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-244
pdb|1X7B|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Erb-041
pdb|1X7B|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Erb-041
pdb|1X7J|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Genistein
pdb|1X7J|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Genistein
pdb|1U3Q|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|C Chain C, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|D Chain D, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3S|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-797
pdb|1U3S|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-797
pdb|3OLS|A Chain A, Crystal Structure Of Estrogen Receptor Beta Ligand Binding
Domain
pdb|3OLS|B Chain B, Crystal Structure Of Estrogen Receptor Beta Ligand Binding
Domain
pdb|3OMO|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMO|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMP|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMP|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMQ|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMQ|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|2YJD|A Chain A, Stapled Peptide Bound To Estrogen Receptor Beta
pdb|2YJD|B Chain B, Stapled Peptide Bound To Estrogen Receptor Beta
Length = 240
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AK++PGF +LS DQ+ L++ + E L +G + R + L F+ + + R +
Sbjct: 48 HMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDE 106
>pdb|3OLL|A Chain A, Crystal Structure Of Phosphorylated Estrogen Receptor Beta
Ligand Binding Domain
pdb|3OLL|B Chain B, Crystal Structure Of Phosphorylated Estrogen Receptor Beta
Ligand Binding Domain
Length = 240
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AK++PGF +LS DQ+ L++ + E L +G + R + L F+ + + R +
Sbjct: 48 HMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDE 106
>pdb|2NV7|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-555
pdb|2NV7|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-555
Length = 238
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AK++PGF +LS DQ+ L++ + E L +G + R + L F+ + + R +
Sbjct: 46 HMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDE 104
>pdb|2YLY|A Chain A, Sulfonamides As Selective Estrogen Receptor Beta Agonists.
pdb|2YLY|B Chain B, Sulfonamides As Selective Estrogen Receptor Beta Agonists
Length = 240
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AK++PGF +LS DQ+ L++ + E L +G + R + L F+ + + R +
Sbjct: 49 HMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDE 107
>pdb|2GIU|A Chain A, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With Compound 45
Length = 241
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AK++PGF +LS DQ+ L++ + E L +G + R + L F+ + + R +
Sbjct: 49 HMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDE 107
>pdb|1QKM|A Chain A, Human Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Partial Agonist Genistein
Length = 255
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQQ 234
++ +AK++PGF +LS DQ+ L++ + E L +G + R + L F+ + + R +
Sbjct: 54 HMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDE 112
>pdb|3D24|A Chain A, Crystal Structure Of Ligand-Binding Domain Of Estrogen-
Related Receptor Alpha (Erralpha) In Complex With The
Peroxisome Proliferators-Activated Receptor Coactivator-
1alpha Box3 Peptide (Pgc-1alpha)
pdb|3D24|C Chain C, Crystal Structure Of Ligand-Binding Domain Of Estrogen-
Related Receptor Alpha (Erralpha) In Complex With The
Peroxisome Proliferators-Activated Receptor Coactivator-
1alpha Box3 Peptide (Pgc-1alpha)
Length = 253
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQ 233
+ +AK +PGF LS DQ+ +++ + E L +G R L L F++ + + +
Sbjct: 70 ISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLDEE 125
>pdb|1XB7|A Chain A, X-Ray Structure Of Erralpha Lbd In Complex With A Pgc-
1alpha Peptide At 2.5a Resolution
Length = 247
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQ 233
+ +AK +PGF LS DQ+ +++ + E L +G R L L F++ + + +
Sbjct: 64 ISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLDEE 119
>pdb|3K6P|A Chain A, Estrogen Related Receptor Alpha In Complex With An Ether
Based Ligand
Length = 248
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQ 233
+ +AK +PGF LS DQ+ +++ + E L +G R L L F++ + + +
Sbjct: 65 ISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLDEE 120
>pdb|2PJL|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Alpha
In Complex With A Synthetic Inverse Agonist Reveals Its
Novel Molecular Mechanism
pdb|2PJL|B Chain B, Crystal Structure Of Human Estrogen-Related Receptor Alpha
In Complex With A Synthetic Inverse Agonist Reveals Its
Novel Molecular Mechanism
Length = 247
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR-LTTDSSLTFSDGMYVTRQ 233
+ +AK +PGF LS DQ+ +++ + E L +G R L L F++ + + +
Sbjct: 64 ISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLDEE 119
>pdb|1G2N|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Ultraspiracle Protein Usp, The Ortholog Of Rxrs In
Insects
Length = 264
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVS 214
+ +V +A+ +P F L +DQ++LIK + EL + ++
Sbjct: 55 IAALVVWARDIPHFSQLEMEDQILLIKGSWNELLLFAIA 93
>pdb|1R1K|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO PONASTERONE A
pdb|1R20|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO THE SYNTHETIC AGONIST
BYI06830
pdb|2R40|A Chain A, Crystal Structure Of 20e Bound Ecr/usp
pdb|3IXP|A Chain A, Crystal Structure Of The Ecdysone Receptor Bound To
Byi08346
Length = 263
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVS 214
+ +V +A+ +P F L +DQ++LIK + EL + ++
Sbjct: 54 IAALVVWARDIPHFSQLEMEDQILLIKGSWNELLLFAIA 92
>pdb|3CTB|A Chain A, Tethered Pxr-LbdSRC-1p Apoprotein
pdb|3CTB|B Chain B, Tethered Pxr-LbdSRC-1p Apoprotein
pdb|3HVL|A Chain A, Tethered Pxr-LbdSRC-1p Complexed With Sr-12813
pdb|3HVL|B Chain B, Tethered Pxr-LbdSRC-1p Complexed With Sr-12813
Length = 344
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
++ FAK + F DL +DQ+ L+K FEL
Sbjct: 136 IISFAKVISYFRDLPIEDQISLLKGAAFEL 165
>pdb|1ILG|A Chain A, Crystal Structure Of Apo Human Pregnane X Receptor Ligand
Binding Domain
pdb|1ILH|A Chain A, Crystal Structure Of Human Pregnane X Receptor Ligand
Binding Domain Bound To Sr12813
pdb|1M13|A Chain A, Crystal Structure Of The Human Pregane X Receptor Ligand
Binding Domain In Complex With Hyperforin, A Constituent
Of St. John's Wort
pdb|1NRL|A Chain A, Crystal Structure Of The Human Pxr-Lbd In Complex With An
Src-1 Coactivator Peptide And Sr12813
pdb|1NRL|B Chain B, Crystal Structure Of The Human Pxr-Lbd In Complex With An
Src-1 Coactivator Peptide And Sr12813
pdb|2QNV|A Chain A, Crystal Structure Of The Pregnane X Receptor Bound To
Colupulone
pdb|3R8D|A Chain A, Activation Of The Human Nuclear Xenobiotic Receptor Pxr By
The Reverse Transcriptase-Targeted Anti-Hiv Drug
Pnu-142721
Length = 316
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
++ FAK + F DL +DQ+ L+K FEL
Sbjct: 136 IISFAKVISYFRDLPIEDQISLLKGAAFEL 165
>pdb|2O9I|A Chain A, Crystal Structure Of The Human Pregnane X Receptor Lbd In
Complex With An Src-1 Coactivator Peptide And T0901317
pdb|2O9I|B Chain B, Crystal Structure Of The Human Pregnane X Receptor Lbd In
Complex With An Src-1 Coactivator Peptide And T0901317
Length = 293
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
++ FAK + F DL +DQ+ L+K FEL
Sbjct: 113 IISFAKVISYFRDLPIEDQISLLKGAAFEL 142
>pdb|1SKX|A Chain A, Structural Disorder In The Complex Of Human Pxr And The
Macrolide Antibiotic Rifampicin
Length = 313
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
++ FAK + F DL +DQ+ L+K FEL
Sbjct: 136 IISFAKVISYFRDLPIEDQISLLKGAAFEL 165
>pdb|3POL|A Chain A, 2.3 Angstrom Crystal Structure Of
3-deoxy-manno-octulosonate Cytidylyltransferase (kdsb)
From Acinetobacter Baumannii
Length = 276
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 171 HVTPSVQRVVEFAKRVPGFCDL--SQDDQLI 199
H P + RVV+ AK+V GF DL + DD+ I
Sbjct: 47 HDRPMILRVVDQAKKVEGFDDLCVATDDERI 77
>pdb|4FCU|A Chain A, 1.9 Angstrom Crystal Structure Of
3-Deoxy-Manno-Octulosonate Cytidylyltransferase (Kdsb)
From Acinetobacter Baumannii Without His- Tag Bound To
The Active Site
Length = 253
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 171 HVTPSVQRVVEFAKRVPGFCDL--SQDDQLI 199
H P + RVV+ AK+V GF DL + DD+ I
Sbjct: 24 HDRPMILRVVDQAKKVEGFDDLCVATDDERI 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,016,262
Number of Sequences: 62578
Number of extensions: 196866
Number of successful extensions: 719
Number of sequences better than 100.0: 352
Number of HSP's better than 100.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 354
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)