BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7884
(240 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P45447|E78C_DROME Ecdysone-induced protein 78C OS=Drosophila melanogaster GN=Eip78C
PE=2 SV=3
Length = 866
Score = 189 bits (479), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 84/139 (60%), Positives = 109/139 (78%), Gaps = 5/139 (3%)
Query: 102 TKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQR 161
+L YDVI+ VSQAH NC YTEE TR L+R+PV++P + + AS+ AE E Q+
Sbjct: 608 ANELTVYDVIMCVSQAHRLNCSYTEELTRELMRRPVTVPQNGI-----ASTVAESLEFQK 662
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS 221
+WLWQQF+A VTP VQR+VEFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL +++
Sbjct: 663 IWLWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEAT 722
Query: 222 LTFSDGMYVTRQQLEVMYD 240
LT DG Y+TRQQLE++YD
Sbjct: 723 LTLDDGAYLTRQQLEILYD 741
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/61 (95%), Positives = 60/61 (98%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCL+ GMSRDSVRYGRVPKRSR
Sbjct: 388 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMSRDSVRYGRVPKRSR 447
Query: 63 E 63
E
Sbjct: 448 E 448
>sp|O77245|E75_METEN Nuclear hormone receptor E75 OS=Metapenaeus ensis GN=E75 PE=2 SV=1
Length = 606
Score = 140 bits (352), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 30/242 (12%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPK
Sbjct: 53 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPK-- 110
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
RE++ V+ E +++ + E DT+ V A+ +AH
Sbjct: 111 REKAKILAAMQSVNAKSQE-----------RAVLAELEDDTR------VTAAIIRAHMDT 153
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASS----TAECHESQRLWLWQQFAAHVTPSVQ 177
C++T + ++++ + P P +A H Q L Q F+ + P+++
Sbjct: 154 CDFTRDKVAPMLQQARTHPSYTQCPPYLACPLNPRPVPLHGQQE--LVQDFSEALLPAIR 211
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL---TTDSSLTFSDGMYVTRQQ 234
VVEFAKR+PGF L Q+DQ+ L+K G FE+ + ++ + T++ L +G V R+
Sbjct: 212 GVVEFAKRLPGFQQLPQEDQVTLLKAGVFEVLLVRLAGMFDARTNAMLCL-NGQLVRREA 270
Query: 235 LE 236
L
Sbjct: 271 LH 272
>sp|P17672|E75BA_DROME Ecdysone-induced protein 75B, isoform A OS=Drosophila melanogaster
GN=Eip75B PE=2 SV=2
Length = 1355
Score = 135 bits (339), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 120/209 (57%), Gaps = 31/209 (14%)
Query: 4 GFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR +
Sbjct: 423 GFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREK 482
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
R A S + G ++L +TELD + L + AV +AH C
Sbjct: 483 AR------------ILAAMQQSTQNRGQQRAL--ATELDDQPRL----LAAVLRAHLETC 524
Query: 123 EYTEEGTRRLVRKPVSLP----PSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
E+T+E + ++ P P+ ++ P + + L Q+F+ ++
Sbjct: 525 EFTKEKVSAMRQRARDCPSYSMPTLLACP--------LNPAPELQSEQEFSQRFAHVIRG 576
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 577 VIDFAGMIPGFQLLTQDDKFTLLKAGLFD 605
>sp|P17671|E75BC_DROME Ecdysone-induced protein 75B, isoforms C/D OS=Drosophila
melanogaster GN=Eip75B PE=2 SV=2
Length = 1199
Score = 134 bits (338), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 121/210 (57%), Gaps = 31/210 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 266 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 325
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R A S + G ++L +TELD + L + AV +AH
Sbjct: 326 KAR------------ILAAMQQSTQNRGQQRAL--ATELDDQPRL----LAAVLRAHLET 367
Query: 122 CEYTEEGTRRLVRKPVSLP----PSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
CE+T+E + ++ P P+ ++ P + + L Q+F+ ++
Sbjct: 368 CEFTKEKVSAMRQRARDCPSYSMPTLLACP--------LNPAPELQSEQEFSQRFAHVIR 419
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 420 GVIDFAGMIPGFQLLTQDDKFTLLKAGLFD 449
>sp|P13055|E75BB_DROME Ecdysone-induced protein 75B, isoform B OS=Drosophila melanogaster
GN=Eip75B PE=2 SV=2
Length = 1412
Score = 134 bits (338), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 121/210 (57%), Gaps = 31/210 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 479 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 538
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R A S + G ++L +TELD + L + AV +AH
Sbjct: 539 KAR------------ILAAMQQSTQNRGQQRAL--ATELDDQPRL----LAAVLRAHLET 580
Query: 122 CEYTEEGTRRLVRKPVSLP----PSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
CE+T+E + ++ P P+ ++ P + + L Q+F+ ++
Sbjct: 581 CEFTKEKVSAMRQRARDCPSYSMPTLLACP--------LNPAPELQSEQEFSQRFAHVIR 632
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 633 GVIDFAGMIPGFQLLTQDDKFTLLKAGLFD 662
>sp|P50239|E75_GALME Ecdysone-inducible protein E75 OS=Galleria mellonella GN=E75 PE=2
SV=1
Length = 711
Score = 131 bits (330), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 116/206 (56%), Gaps = 25/206 (12%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 68 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 127
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN 121
+ R + + STT A E A ++ ELD L V+ +AH
Sbjct: 128 KARI---LAAMQSSTTRAH-----EQA-------AAAELDDGPRLLARVV----RAHLDT 168
Query: 122 CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVE 181
CE+T + + P S P +A E Q + Q AHV ++ V++
Sbjct: 169 CEFTRDRVAAMRNGARDCP--TYSQPTLACPLNPAPELQSEKEFSQRFAHV---IRGVID 223
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE 207
FA +PGF L+QDD+ L+K G F+
Sbjct: 224 FAGLIPGFQLLTQDDKFTLLKSGLFD 249
>sp|O01639|E75_CHOFU Ecdysone-inducible protein E75 OS=Choristoneura fumiferana GN=E75
PE=2 SV=1
Length = 690
Score = 130 bits (327), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 115/209 (55%), Gaps = 30/209 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 68 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 127
Query: 62 RER---SDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
+ R + ++ S+R A + ELD L V+ +AH
Sbjct: 128 KARILAAMQQSSSSRAHEQAA-----------------AAELDDAPRLLARVV----RAH 166
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
CE+T + + + P S P +A E Q + Q AHV ++
Sbjct: 167 LDTCEFTRDRVAAMRARARDCP--TYSQPTLACPLNPAPELQSEKEFSQRFAHV---IRG 221
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 222 VIDFAGLIPGFQLLTQDDKFTLLKSGLFD 250
>sp|Q08893|E75_MANSE Ecdysone-inducible protein E75 OS=Manduca sexta GN=E75 PE=2 SV=2
Length = 699
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 115/209 (55%), Gaps = 30/209 (14%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 66 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 125
Query: 62 RER---SDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
+ R + ++ ++R A + ELD L V+ +AH
Sbjct: 126 KARILAAMQQSSTSRAHEQAA-----------------AAELDDAPRLLARVV----RAH 164
Query: 119 HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
CE+T + + + P S P +A E Q + Q AHV ++
Sbjct: 165 LDTCEFTRDRVAAMRARARDCP--TYSQPTLACPLNPAPELQSEKEFSQRFAHV---IRG 219
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE 207
V++FA +PGF L+QDD+ L+K G F+
Sbjct: 220 VIDFAGLIPGFQLLTQDDKFTLLKSGLFD 248
>sp|P41830|CNR14_CAEEL Steroid hormone receptor family member cnr14 OS=Caenorhabditis
elegans GN=cnr-14 PE=2 SV=2
Length = 534
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 121/237 (51%), Gaps = 35/237 (14%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQ++I+YRCL+ C + R +RNRCQYCRFKKCL GMS+DSVR ++ R+
Sbjct: 172 KGFFRRSIQRKIDYRCLKQQVCEIKRESRNRCQYCRFKKCLDSGMSKDSVR--QMKFRNA 229
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
R D S V + +L E+D V AV +AH +
Sbjct: 230 MRDDKSPDSVFVPE--------------ISTLERQEEVDA-------VYEAVLRAHTTFS 268
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
YT+ R +V +P ++ +E S + RL WQ +A + ++ VV F
Sbjct: 269 FYTDIKIRSIVARPFNVRINEDS------------KMNRLNAWQIYAHEIDVDIKEVVNF 316
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYVTRQQLEVMY 239
K +P F ++ +D+ +L++ F L++ + R ++ L DG + + L+++Y
Sbjct: 317 VKEIPKFNFINGNDKAVLLRKNAFPLYLLRIVRGMSNRGLMLRDGRLIDFKSLQLLY 373
>sp|P10826|RARB_HUMAN Retinoic acid receptor beta OS=Homo sapiens GN=RARB PE=1 SV=2
Length = 455
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 116/236 (49%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKK 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD LT + A + S C
Sbjct: 168 ETSKQEC---------------------TESYEMTAELDD---LTEKIRKAHQETFPSLC 203
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 204 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 242
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 243 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 298
>sp|P22448|RARB_CHICK Retinoic acid receptor beta OS=Gallus gallus GN=RARB PE=2 SV=2
Length = 455
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 117/236 (49%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKK 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E + E+ ++ + ELD LT + A + S C
Sbjct: 168 EPTKQES---------------------TENYEMTAELDD---LTEKIRKAHQETFPSLC 203
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 204 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 242
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 243 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 298
>sp|P22605|RARB_MOUSE Retinoic acid receptor beta OS=Mus musculus GN=Rarb PE=1 SV=1
Length = 482
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 116/236 (49%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 136 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKK 194
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E S E +S + ELD LT + A + S C
Sbjct: 195 EPSKQEC---------------------TESYEMTAELDD---LTEKIRKAHQETFPSLC 230
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 231 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 269
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 270 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 325
>sp|Q9W6B3|RARB_COTJA Retinoic acid receptor beta OS=Coturnix coturnix japonica GN=RARB
PE=2 SV=1
Length = 455
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 117/236 (49%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKK 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E + E+ ++ + ELD LT + A + S C
Sbjct: 168 EPTKQES---------------------TENYEMTAELDD---LTEKIRKAHQETFPSLC 203
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ + T +S+A+ L LW +F+ T + ++VEF
Sbjct: 204 QLGKYTT---------------------NSSADHRVRLDLGLWDKFSELATKCIIKIVEF 242
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 243 AKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 298
>sp|P18514|RARA_NOTVI Retinoic acid receptor alpha OS=Notophthalmus viridescens GN=RARA
PE=2 SV=1
Length = 458
Score = 114 bits (285), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 112/240 (46%), Gaps = 55/240 (22%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 108 KGFFRRSIQKNMVYTCHRDKTCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKQ 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN- 121
E E + + T E D++ V +AH
Sbjct: 168 EAPKQECTESYIITPEVE----------------------------DLVEKVRKAHQETF 199
Query: 122 ---CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
C+ + T + VSL + LW +F+ T + +
Sbjct: 200 PALCQLGKYTTNNSSEERVSL---------------------DIDLWDKFSELSTKCIIK 238
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
VEFAK++PGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ + R Q+
Sbjct: 239 TVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMH 298
>sp|P13631|RARG_HUMAN Retinoic acid receptor gamma OS=Homo sapiens GN=RARG PE=1 SV=1
Length = 454
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 161
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 162 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 201
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 202 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 243
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 244 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 299
>sp|P18911|RARG_MOUSE Retinoic acid receptor gamma OS=Mus musculus GN=Rarg PE=1 SV=3
Length = 458
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVR--------- 161
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+D V G+ P S E + P EL TK VS+AH
Sbjct: 162 --NDRNKKKKEVKEEGS--PDSYELS------PQLEELITK----------VSKAHQETF 201
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 202 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 243
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF LS DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 244 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 299
>sp|P41828|NHR23_CAEEL Nuclear hormone receptor family member nhr-23 OS=Caenorhabditis
elegans GN=nhr-23 PE=2 SV=2
Length = 588
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 121/256 (47%), Gaps = 47/256 (18%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R C+V R+NRNRCQYCR KKC+ +GMSRD+V++GR+ K+ R
Sbjct: 184 KGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRLKKCIELGMSRDAVKFGRMSKKQR 243
Query: 63 ERSDSETGSTR-VSTTGA---------EPPSSLETAGPVQSL----PSSTELDTKQLLTY 108
E+ + E + ++ G PP S + QS+ PS T + + Y
Sbjct: 244 EKVEDEVRMHKELAANGLGYQAIYGDYSPPPSHPSYCFDQSMYGHYPSGT---STPVNGY 300
Query: 109 DVILAVS------QAHHSNCEYTEEGTRRLVRKPV--SLPPSEVSSPEVASSTAECHESQ 160
+ +A + Q + + GT+ + + S P +V +VA+ Q
Sbjct: 301 SIAVAATPTTPMPQNMYGATPSSTNGTQYVAHQATGGSFPSPQVPEEDVATRVIRAFNQQ 360
Query: 161 ----------------------RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQL 198
R W+ FA + P +Q ++EFAK + GF +L Q+ Q+
Sbjct: 361 HSSYTTQHGVCNVDPDCIPHLSRAGGWELFARELNPLIQAIIEFAKSIDGFMNLPQETQI 420
Query: 199 ILIKMGFFELWIGYVS 214
L+K FEL + + +
Sbjct: 421 QLLKGSVFELSLVFAA 436
>sp|P31396|HR3_DROME Probable nuclear hormone receptor HR3 OS=Drosophila melanogaster
GN=Hr46 PE=2 SV=1
Length = 487
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 132/284 (46%), Gaps = 64/284 (22%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R+ +C+V R+NRNRCQYCR +KCL +GMSRD+V++GR+ K+ R
Sbjct: 72 KGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 131
Query: 63 ERSDSETGSTRV---STTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH 119
E+ + E R + + A P SS+ Q+ SS +L +Y + ++ +
Sbjct: 132 EKVEDEVRFHRAQMRAQSDAAPDSSVYD---TQTPSSSDQLHHNNYNSYSGGYSNNEVGY 188
Query: 120 S-----NCEYTEEGTRR------LVRKPVSLPPSEVSSPEVAS------------STAEC 156
+ T + T + V P S + PE S + AE
Sbjct: 189 GSPYGYSASVTPQQTMQYDISADYVDSTTYEPRSTIIDPEFISHADGDINDVLIKTLAEA 248
Query: 157 HESQRLWLWQQFAAH----VTPSVQRVV--------------------------EFAKRV 186
H + L A H P V R++ EFAK +
Sbjct: 249 HANTNTKLE---AVHDMFRKQPDVSRILYYKNLGQEELWLDCAEKLTQMIQNIIEFAKLI 305
Query: 187 PGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGM 228
PGF LSQDDQ++L+K G FEL I +SRL + +++ + D M
Sbjct: 306 PGFMRLSQDDQILLLKTGSFELAIVRMSRLLDLSQNAVLYGDVM 349
>sp|Q91392|RARGA_DANRE Retinoic acid receptor gamma-A OS=Danio rerio GN=rarga PE=1 SV=2
Length = 499
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 112/236 (47%), Gaps = 49/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R
Sbjct: 98 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR------ 151
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ PP S E +G ++ L + VS+AH
Sbjct: 152 ------NKKKKDVKDEVIPPESYELSGELEEL----------------VNKVSKAHQETF 189
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 190 ------------------PSLCQLGKYTTNSSSDHRIQLDLGLWDKFSELSTKCIIKIVE 231
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 232 FAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 287
>sp|P18516|RARG_NOTVI Retinoic acid receptor gamma OS=Notophthalmus viridescens GN=RARG
PE=2 SV=2
Length = 505
Score = 110 bits (276), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 110/236 (46%), Gaps = 50/236 (21%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R
Sbjct: 164 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR------ 217
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ V T E P +E +I VS+AH
Sbjct: 218 -NKKKKEIKEEVVTDSYEMPPEMEA----------------------LIQKVSKAHQETF 254
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 255 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWHKFSELATKCIIKIVE 296
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 297 FAKRLPGFATLTIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 352
>sp|A2T928|RARGB_DANRE Retinoic acid receptor gamma-B OS=Danio rerio GN=rargb PE=2 SV=1
Length = 489
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 49/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R
Sbjct: 86 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLRKCFEVGMSKEAVRNDR------ 139
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
+ P S E +G ++ L + VS+AH
Sbjct: 140 ------NKKKKDVKEEVVLPESYELSGELEEL----------------VNKVSKAHRETF 177
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQ-RLWLWQQFAAHVTPSVQRVVE 181
PS + ++++ H Q L LW +F+ T + ++VE
Sbjct: 178 ------------------PSLCQLGKYTTNSSADHRVQLDLGLWDKFSELSTKCIIKIVE 219
Query: 182 FAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
FAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 220 FAKRLPGFTSLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 275
>sp|Q90966|RARA_CHICK Retinoic acid receptor alpha OS=Gallus gallus GN=RARA PE=2 SV=1
Length = 460
Score = 107 bits (268), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 113/240 (47%), Gaps = 56/240 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN-KKKK 167
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSN- 121
+ +E + + T E ++I V +AH
Sbjct: 168 DVPKTECSESYIVTPEVE----------------------------ELIEKVRKAHQETF 199
Query: 122 ---CEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
C+ + T + VSL + LW +F+ T + +
Sbjct: 200 PALCQLGKYTTNNSSEQRVSL---------------------DIDLWDKFSELSTKCIIK 238
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
VEFAK++PGF L+ DQ+ L+K ++ I + +R T + ++TFSDG+ + R Q+
Sbjct: 239 TVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 298
>sp|P28699|RARG_XENLA Retinoic acid receptor gamma OS=Xenopus laevis GN=rarg PE=2 SV=2
Length = 476
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 112/239 (46%), Gaps = 55/239 (23%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQ+CR +KC VGMS+++VR R
Sbjct: 131 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQFCRLQKCFQVGMSKEAVR------NDR 184
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHH--- 119
+ E V E P +E ++I VS+AH
Sbjct: 185 NKKKKEIKEEVVLPDSYEMPPEME----------------------ELIQKVSKAHQETF 222
Query: 120 -SNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQR 178
S C+ + T +S+A+ L LW +F+ T + +
Sbjct: 223 PSLCQLGKYTT---------------------NSSADQRVQLDLGLWDKFSELSTKCIIK 261
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQL 235
+VEFAKR+PGF L+ DQ+ L+K + L + +R T + ++TFSDG+ + R Q+
Sbjct: 262 IVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQM 320
>sp|Q02965|THB_LITCT Thyroid hormone receptor beta OS=Lithobates catesbeiana GN=thrb
PE=2 SV=2
Length = 373
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 123/241 (51%), Gaps = 33/241 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+AVGM+ D V R+
Sbjct: 40 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLA 99
Query: 59 KRSR-ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQA 117
KR E + + + T + P P+ E + Q++T + +Q
Sbjct: 100 KRKLIEENREKRRKDELQKTLVQKPE-----------PTPEEWELIQVVTEAHVATNAQG 148
Query: 118 HHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
H + R+ + + + P V++PE E + QF +TP++
Sbjct: 149 SHW------KQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSQFTKIITPAIT 193
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQL 235
RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR QL
Sbjct: 194 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL 253
Query: 236 E 236
+
Sbjct: 254 K 254
>sp|P18117|THBA_XENLA Thyroid hormone receptor beta-A OS=Xenopus laevis GN=thrb-a PE=1
SV=1
Length = 373
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 123/241 (51%), Gaps = 33/241 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+AVGM+ D V R+
Sbjct: 40 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDNKRLA 99
Query: 59 KRSR-ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQA 117
KR E + + + + + P P+ E + Q++T + +Q
Sbjct: 100 KRKLIEENREKRRKDEIQKSLVQKPE-----------PTQEEWELIQVVTEAHVATNAQG 148
Query: 118 HHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
H + R+ + + + P V++PE E + QF +TP++
Sbjct: 149 SHW------KQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSQFTKIITPAIT 193
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQL 235
RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR QL
Sbjct: 194 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL 253
Query: 236 E 236
+
Sbjct: 254 K 254
>sp|P51126|RARA_XENLA Retinoic acid receptor alpha OS=Xenopus laevis GN=rara PE=2 SV=1
Length = 458
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 110/236 (46%), Gaps = 48/236 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SV
Sbjct: 109 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESV---------- 158
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
R+D A ++S S E T D+I V +AH
Sbjct: 159 -RNDRNKKKKESPKPEA-----------IESYILSPE-------TQDLIEKVQKAHQE-- 197
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
+ P S ++E S + LW +F+ T + + VEF
Sbjct: 198 ---------------TFPALCQLGKYTTSFSSEQRVSLDIDLWDKFSELSTKCIIKTVEF 242
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTD-SSLTFSDGMYVTRQQLE 236
AK++PGF L+ DQ+ L+K ++ I + +R T D ++TFSDG+ + R Q+
Sbjct: 243 AKQLPGFTTLTIADQITLLKSACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMH 298
>sp|P18115|THAB_XENLA Thyroid hormone receptor alpha-B OS=Xenopus laevis GN=thra-b PE=1
SV=2
Length = 418
Score = 104 bits (259), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 124/241 (51%), Gaps = 33/241 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 82 KGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 141
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR RV E +L+ + PSS E +++I V++AH
Sbjct: 142 KRKL------IEENRVRRRKEEMIKTLQQ----RPEPSSEE--------WELIRIVTEAH 183
Query: 119 HS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
S N + + RR P ++ +AS + L + +F +TP++
Sbjct: 184 RSTNAQGSHWKQRR------KFLPEDIGQSPMASMPD--GDKVDLEAFSEFTKIITPAIT 235
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQL 235
RVV+FAK++P F +L+ +DQ+IL+K E+ + R DS +LT S M V R+QL
Sbjct: 236 RVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEMAVKREQL 295
Query: 236 E 236
+
Sbjct: 296 K 296
>sp|P20393|NR1D1_HUMAN Nuclear receptor subfamily 1 group D member 1 OS=Homo sapiens
GN=NR1D1 PE=1 SV=1
Length = 614
Score = 103 bits (258), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 153 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 212
Query: 62 RERSDSETGS 71
++R +E S
Sbjct: 213 KQRMLAEMQS 222
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 435 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 494
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 495 VMFLSRTTYSLQELGAM 511
>sp|Q3UV55|NR1D1_MOUSE Nuclear receptor subfamily 1 group D member 1 OS=Mus musculus
GN=Nr1d1 PE=1 SV=1
Length = 615
Score = 103 bits (258), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 154 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 213
Query: 62 RERSDSE 68
++R +E
Sbjct: 214 KQRMLAE 220
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 436 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 495
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 496 VMFLSRTTYSLQELGAM 512
>sp|P15204|THAA_XENLA Thyroid hormone receptor alpha-A OS=Xenopus laevis GN=thra-a PE=1
SV=3
Length = 418
Score = 103 bits (258), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 125/246 (50%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 82 KGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 141
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +R+R E + T P PSS E +++I
Sbjct: 142 KRKLIEENRQRRRKE---EMIKTLQQRPE------------PSSEE--------WELIRI 178
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
V++AH S N + + RR P ++ +AS + L + +F +
Sbjct: 179 VTEAHRSTNAQGSHWKQRR------KFLPEDIGQSPMASMPD--GDKVDLEAFSEFTKII 230
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L+ +DQ+IL+K E+ + R DS +LT S M V
Sbjct: 231 TPAITRVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEMAV 290
Query: 231 TRQQLE 236
R+QL+
Sbjct: 291 KREQLK 296
>sp|Q63503|NR1D1_RAT Nuclear receptor subfamily 1 group D member 1 OS=Rattus norvegicus
GN=Nr1d1 PE=2 SV=2
Length = 615
Score = 103 bits (258), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 154 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 213
Query: 62 RERSDSE 68
++R +E
Sbjct: 214 KQRMLAE 220
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 436 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 495
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 496 VMFLSRTTYSLQELGAM 512
>sp|Q08E02|NR1D1_BOVIN Nuclear receptor subfamily 1 group D member 1 OS=Bos taurus
GN=NR1D1 PE=1 SV=1
Length = 613
Score = 103 bits (258), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 154 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 213
Query: 62 RERSDSE 68
++R +E
Sbjct: 214 KQRMLAE 220
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 434 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 493
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 494 VMFLSRTTYSLQELGAM 510
>sp|B3SV56|NR1D1_SHEEP Nuclear receptor subfamily 1 group D member 1 OS=Ovis aries PE=2
SV=1
Length = 614
Score = 103 bits (258), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 154 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 213
Query: 62 RERSDSE 68
++R +E
Sbjct: 214 KQRMLAE 220
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE+ + + L D +
Sbjct: 435 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 494
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 495 VMFLSRTTYSLQELGAM 511
>sp|Q14995|NR1D2_HUMAN Nuclear receptor subfamily 1 group D member 2 OS=Homo sapiens
GN=NR1D2 PE=1 SV=3
Length = 579
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 184 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQLEQENIKSSS 242
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 401 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 460
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 461 VTFLSGKKYSVDDLHSM 477
>sp|Q02777|THA_LITCT Thyroid hormone receptor alpha OS=Lithobates catesbeiana GN=thra
PE=2 SV=1
Length = 418
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 121/243 (49%), Gaps = 37/243 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 82 KGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 141
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + + T P PSS E +++I V++
Sbjct: 142 KRKLIEENRERRRKEEMIKTLQQRPE------------PSSEE--------WELIRIVTE 181
Query: 117 AHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPS 175
AH S N + + RR P ++ +AS + L + +F +TP+
Sbjct: 182 AHRSTNAQGSHWKQRR------KFLPEDIGQNPMASMPDS--DKVDLEAFSEFTKIITPA 233
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQ 233
+ RVV+FAK++P F +L +DQ+IL+K E+ + R DS +LT S M V R+
Sbjct: 234 ITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLSGEMAVKRE 293
Query: 234 QLE 236
QL+
Sbjct: 294 QLK 296
>sp|Q60674|NR1D2_MOUSE Nuclear receptor subfamily 1 group D member 2 OS=Mus musculus
GN=Nr1d2 PE=1 SV=1
Length = 576
Score = 101 bits (252), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 85/144 (59%), Gaps = 19/144 (13%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RERSDSETGS---TRVST--TGAEPPSSLETAGPVQSLPSSTELDTKQLLTY-------- 108
++R E S T ++T +G +L +LP+ +L K L
Sbjct: 184 KQRMLIEMQSAMKTMMNTQFSGHLQNDTLAEQHDQSALPAQEQLRPKSQLEQENIKNTPS 243
Query: 109 -----DVILAVSQAHHSNCEYTEE 127
+VI V++AH Y +E
Sbjct: 244 DFAKEEVIGMVTRAHKDTFLYNQE 267
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 398 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 457
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 458 VTFLSGKKYSVDDLHSM 474
>sp|Q08882|HR3_MANSE Probable nuclear hormone receptor HR3 OS=Manduca sexta GN=HR3 PE=2
SV=1
Length = 548
Score = 101 bits (251), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 115/269 (42%), Gaps = 55/269 (20%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSR------------- 49
+GFFRRS + Y+C R+ C+V R+NRNRCQYCR +KCL +GMSR
Sbjct: 125 KGFFRRSQSTVVNYQCPRNKACVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 184
Query: 50 ----DSVRYGRVPKRSRE----------------RSDSETGSTRVSTTGAEPPSSL--ET 87
D VRY + R++ SD G A P SS
Sbjct: 185 EKVEDEVRYHKAQMRAQNDAAPDSVYDAQQQTPSSSDQFHGHYNGYPGYASPLSSYGYNN 244
Query: 88 AGP-VQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTE-------EG------TRRLV 133
AGP + S SS + + YD + + Y + EG + L
Sbjct: 245 AGPPLTSNMSSIQAQPQAQQPYDYADSTTTYEPKQPGYLDADFIGQVEGDISKVLVKSLA 304
Query: 134 RKPVSLPPS------EVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVP 187
+ + P S P+ S + +W A +T +Q ++EFAK +P
Sbjct: 305 ERHANTNPKLEYINEMFSKPQDVSKLLFYNSMTYEEMWLDCADKLTAMIQNIIEFAKLIP 364
Query: 188 GFCDLSQDDQLILIKMGFFELWIGYVSRL 216
GF L+QDDQ++L+K G FEL I +SRL
Sbjct: 365 GFMKLTQDDQILLLKSGSFELAIVRLSRL 393
>sp|Q9XUK7|NHR85_CAEEL Nuclear hormone receptor family member nhr-85 OS=Caenorhabditis
elegans GN=nhr-85 PE=2 SV=2
Length = 514
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I YR C R CL++R NRNRCQ CR KKCLAVGMSRD+VR+GRVPKR
Sbjct: 134 KGFFRRSIQQKITYRACTRAEDCLILRNNRNRCQCCRLKKCLAVGMSRDAVRFGRVPKRE 193
Query: 62 RERSDSETGSTRVST 76
+ R E T V +
Sbjct: 194 KARMFEEMQKTNVQS 208
>sp|Q63504|NR1D2_RAT Nuclear receptor subfamily 1 group D member 2 OS=Rattus norvegicus
GN=Nr1d2 PE=2 SV=1
Length = 578
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 86/151 (56%), Gaps = 31/151 (20%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RER------------SDSETGSTRVSTTGAEP-----PSSLETAGP--------VQSLPS 96
++R ++ G S T AEP P + E P ++S P
Sbjct: 184 KQRMLIEMQSAMKTMMSTQFGGHLQSDTLAEPHEQSVPPAQEQLRPKPQLEQENIKSTPP 243
Query: 97 STELDTKQLLTYDVILAVSQAHHSNCEYTEE 127
++ ++ VI V++AH Y +E
Sbjct: 244 PSDFAKEE-----VIGMVTRAHKDTFLYNQE 269
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L + +
Sbjct: 400 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 459
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 460 VTFLSGKKYSVDDLHSM 476
>sp|Q9W785|THA_SALSA Thyroid hormone receptor alpha OS=Salmo salar GN=thra1 PE=2 SV=1
Length = 416
Score = 100 bits (250), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 121/243 (49%), Gaps = 37/243 (15%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRF+KC+AV M+ D V RV
Sbjct: 80 KGFFRRTIQKNLHPAYSCKYDGCCIIDKITRNQCQLCRFRKCIAVCMAMDLVLDDSKRVA 139
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + V T A P P S+E +++I V++
Sbjct: 140 KRRLIEENREKRKKDEIVKTLQARPE------------PDSSE--------WELIRHVTE 179
Query: 117 AH-HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPS 175
AH H+N + + +R LP SP + + L + +F +TP+
Sbjct: 180 AHRHTNAQGSHWKQKRKF-----LPEDIGQSPRAPTPDG---DKVDLEAFSEFTKIITPA 231
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQ 233
+ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V R+
Sbjct: 232 ITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKRE 291
Query: 234 QLE 236
QL+
Sbjct: 292 QLK 294
>sp|P49868|HR3_GALME Probable nuclear hormone receptor HR3 OS=Galleria mellonella GN=HR3
PE=2 SV=1
Length = 557
Score = 100 bits (250), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 122/292 (41%), Gaps = 96/292 (32%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSR------------- 49
+GFFRRS + Y+C R+ C+V R+NRNRCQYCR +KCL +GMSR
Sbjct: 129 KGFFRRSQSTVVNYQCPRNKACVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 188
Query: 50 ----DSVRYGRVPKRSRERSDSETGSTRVSTTGAEPPSSLE------------------- 86
D VRY R++ R+ ++ V + PSS +
Sbjct: 189 EKVEDEVRY----HRAQMRAQTDAAPDSVYDAQQQTPSSSDQFHGHYNGYPGYRSPLSSY 244
Query: 87 ----TAGPVQS---------------------LPSSTELDTKQ---LLTYDVI------- 111
AGP + + S+T + KQ L D I
Sbjct: 245 GYGGNAGPALTSNMNIQPQAPQQQPYDVSADYVDSTTAYEPKQTGGFLDADFIGHAEGDI 304
Query: 112 ---LAVSQAH-HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVAS---STAECHESQRLWL 164
L S A H+N E + RKP P+V+ + +E +
Sbjct: 305 SKVLVKSLAEAHANTNPKLEYVHEMFRKP----------PDVSKLLFYNSMTYEE----M 350
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL 216
W A +T +Q ++EFAK +PGF LSQDDQ++L+K G FEL I +SRL
Sbjct: 351 WLDCADKLTGMIQNIIEFAKLIPGFMKLSQDDQILLLKSGSFELAIVRLSRL 402
>sp|P18119|THBB_XENLA Thyroid hormone receptor beta-B OS=Xenopus laevis GN=thrb-b PE=2
SV=1
Length = 414
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 121/241 (50%), Gaps = 33/241 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC VGM+ D V R+
Sbjct: 81 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCKTVGMATDLVLDDSKRLA 140
Query: 59 KRSR-ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQA 117
KR E + + + + + P P+ E + Q++T + +Q
Sbjct: 141 KRKLIEENREKRRKDEIQKSIVQRPE-----------PTQEEWELIQVVTEAHVATNAQG 189
Query: 118 HHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
H + R+ + + + P V++PE E + QF +TP++
Sbjct: 190 SHW------KQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSQFTKIITPAIT 234
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQL 235
RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR QL
Sbjct: 235 RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL 294
Query: 236 E 236
+
Sbjct: 295 K 295
>sp|Q91279|THB_PAROL Thyroid hormone receptor beta OS=Paralichthys olivaceus GN=thrb
PE=2 SV=1
Length = 395
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 122/242 (50%), Gaps = 26/242 (10%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+AVGM+ D V
Sbjct: 53 KGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLA 112
Query: 61 SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHS 120
R+ + R LE P+ E +D+I V++AH +
Sbjct: 113 KRKLIEENRERRRKEELQKTVWDRLE--------PTQEE--------WDLIRMVTEAHMA 156
Query: 121 NCEYTEEGTRRLVRKPVSLPPSEVSSPEVA--SSTAECHESQRLWL--WQQFAAHVTPSV 176
++ RK +S + PE +S A E ++ + + QF +TP++
Sbjct: 157 TNAQGNHWKQK--RKFLSAAGVKEDKPEEIGQASMANTPEGNKVDIEAFSQFTKIITPAI 214
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQ 234
RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR Q
Sbjct: 215 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 274
Query: 235 LE 236
L+
Sbjct: 275 LK 276
>sp|P68306|THB_CHICK Thyroid hormone receptor beta OS=Gallus gallus GN=THRB PE=1 SV=1
Length = 369
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 121/242 (50%), Gaps = 35/242 (14%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 36 KGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLA 95
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + T G +P P+ E + +++T + +Q
Sbjct: 96 KRKLIEENREKRRREELQKTIGHKPE------------PTDEEWELIKIVTEAHVATNAQ 143
Query: 117 AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
H + R+ + + + P V++PE E + QF +TP++
Sbjct: 144 GSHW------KQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSQFTKIITPAI 188
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQ 234
RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR Q
Sbjct: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
Query: 235 LE 236
L+
Sbjct: 249 LK 250
>sp|P68305|THB_CAIMO Thyroid hormone receptor beta OS=Cairina moschata GN=THRB PE=2 SV=1
Length = 369
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 121/242 (50%), Gaps = 35/242 (14%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 36 KGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLA 95
Query: 59 KRS--RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQ 116
KR E + T G +P P+ E + +++T + +Q
Sbjct: 96 KRKLIEENREKRRREELQKTIGHKPE------------PTDEEWELIKIVTEAHVATNAQ 143
Query: 117 AHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSV 176
H + R+ + + + P V++PE E + QF +TP++
Sbjct: 144 GSHW------KQKRKFLPEDIGQAPI-VNAPEGGKVDLEA--------FSQFTKIITPAI 188
Query: 177 QRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQ 234
RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M VTR Q
Sbjct: 189 TRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQ 248
Query: 235 LE 236
L+
Sbjct: 249 LK 250
>sp|Q6DHP9|RXRGB_DANRE Retinoic acid receptor RXR-gamma-B OS=Danio rerio GN=rxrgb PE=2
SV=1
Length = 452
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 107/232 (46%), Gaps = 58/232 (25%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+I+K + Y C +CL+ + RNRCQYCR++KCLA+GM R++V+ R +R +
Sbjct: 149 KGFFKRTIRKDLTYTCRDIKECLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRGK 206
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNC 122
E+SD+E +T S PV + D L+V +
Sbjct: 207 EKSDTEVETT----------SRFNEDMPVDKI-------------LDAELSVEPKTET-- 241
Query: 123 EYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEF 182
YTE PV T CH + + Q F +VE+
Sbjct: 242 -YTESSPSNSTNDPV---------------TNICHAADK----QLFT---------LVEW 272
Query: 183 AKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
AKR+P F DL DDQ+IL++ G+ EL I S +T + G++V R
Sbjct: 273 AKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSITVKDGILLGTGLHVHR 324
>sp|Q9PVE4|THB_DANRE Thyroid hormone receptor beta OS=Danio rerio GN=thrb PE=1 SV=2
Length = 395
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 127/246 (51%), Gaps = 34/246 (13%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+AVGM+ D V R+
Sbjct: 53 KGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLA 112
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR ++ E E V P T+ + +++I V++AH
Sbjct: 113 KR------------KLIEENRERRRREELQKTVWDRPEPTQEE------WEMIRVVTEAH 154
Query: 119 HS-NCEYTEEGTRRLVRKPVSL---PPSEVSSPEVASSTAECHESQRLWL--WQQFAAHV 172
+ N + +R V + P ++ S + ++ E ++ + + QF +
Sbjct: 155 MATNAQGNHWKQKRKFLSAVGVKEAKPEDIGSAPIVNAP----EGNKVDIEAFSQFTKII 210
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +LT + M V
Sbjct: 211 TPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLNGEMAV 270
Query: 231 TRQQLE 236
TR QL+
Sbjct: 271 TRGQLK 276
>sp|Q28570|THA_SHEEP Thyroid hormone receptor alpha OS=Ovis aries GN=THRA PE=2 SV=1
Length = 410
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
>sp|Q98867|THAA_DANRE Thyroid hormone receptor alpha-A OS=Danio rerio GN=thraa PE=1 SV=1
Length = 427
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 121/241 (50%), Gaps = 34/241 (14%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRF+KC++VGM+ D V RV
Sbjct: 78 KGFFRRTIQKNLHPSYSCKYDSCCIIDKITRNQCQLCRFRKCISVGMAMDLVLDDSKRVA 137
Query: 59 KRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAH 118
KR R+ E E + + P T + +++I V++AH
Sbjct: 138 KR------------RLIEENREKRKKEEIVKTLHNRPEPT------VSEWELIRMVTEAH 179
Query: 119 -HSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQ 177
H+N + +R LP SP S ++ L + +F +TP++
Sbjct: 180 RHTNAQGPHWKQKRKF-----LPEDIGQSPAPTSD----NDKVDLEAFSEFTKIITPAIT 230
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYVTRQQL 235
RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V+R+QL
Sbjct: 231 RVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVSREQL 290
Query: 236 E 236
+
Sbjct: 291 K 291
>sp|O97716|THA_PIG Thyroid hormone receptor alpha OS=Sus scrofa GN=THRA PE=2 SV=1
Length = 506
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 43/246 (17%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV--RYGRVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILA 113
KR +RER E E +Q P T + +D+I
Sbjct: 134 KRKLIEQNRERRRKE-----------------EMIRSLQQRPEPTPEE------WDLIHV 170
Query: 114 VSQAHHS-NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHV 172
++AH S N + + RR LP SP V+ + L + +F +
Sbjct: 171 ATEAHRSTNAQGSHWKQRRKF-----LPDDIGQSPIVSMPDG---DKVDLEAFSEFTKII 222
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SLTFSDGMYV 230
TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +LT S M V
Sbjct: 223 TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAV 282
Query: 231 TRQQLE 236
R+QL+
Sbjct: 283 KREQLK 288
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,411,187
Number of Sequences: 539616
Number of extensions: 3050125
Number of successful extensions: 9300
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 8359
Number of HSP's gapped (non-prelim): 784
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)