Query psy7884
Match_columns 240
No_of_seqs 115 out of 1485
Neff 10.6
Searched_HMMs 29240
Date Fri Aug 16 21:16:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dzy_D Peroxisome proliferator 100.0 1.8E-35 6.2E-40 243.5 17.8 209 2-236 73-296 (419)
2 3dzy_A Retinoic acid receptor 100.0 1.8E-36 6E-41 252.0 10.5 183 2-237 160-344 (467)
3 3cbb_A HNF-4-alpha, hepatocyte 99.9 4.8E-27 1.6E-31 145.6 2.3 56 2-57 23-78 (78)
4 2ebl_A COUP transcription fact 99.9 5.9E-27 2E-31 148.6 2.0 59 2-60 30-88 (89)
5 1ynw_B Retinoic acid receptor 99.9 8.9E-27 3E-31 150.8 2.2 62 2-63 26-87 (99)
6 1dsz_B RXR-alpha, retinoic aci 99.9 1E-26 3.5E-31 146.4 2.3 57 2-58 28-84 (85)
7 1dsz_A RAR-alpha, retinoic aci 99.9 1.1E-26 3.7E-31 146.8 2.3 59 2-60 27-85 (86)
8 2han_A Protein ultraspiracle; 99.9 1.4E-26 4.9E-31 148.3 2.1 59 2-60 33-91 (93)
9 1a6y_A Orphan nuclear receptor 99.9 1.4E-26 4.8E-31 148.6 2.0 62 2-63 30-92 (94)
10 1lo1_A Steroid hormone recepto 99.9 2.1E-26 7.1E-31 148.8 1.0 62 2-63 27-88 (98)
11 1hcq_A Protein (estrogen recep 99.9 3.9E-26 1.3E-30 143.5 2.0 56 2-57 27-82 (84)
12 1cit_A NGFI-B, protein (orphan 99.9 7.9E-26 2.7E-30 143.6 2.0 59 2-60 23-81 (89)
13 2a66_A Orphan nuclear receptor 99.9 1.9E-25 6.7E-30 147.7 3.0 61 2-62 32-92 (113)
14 4hn5_A Glucocorticoid receptor 99.9 2.6E-25 9E-30 147.8 2.1 59 2-60 52-110 (117)
15 3g9m_A Glucocorticoid receptor 99.9 1.8E-25 6.3E-30 142.9 0.7 60 2-61 25-84 (90)
16 2han_B Ecdysone receptor; tran 99.9 2E-25 6.9E-30 149.6 0.9 58 2-59 31-88 (119)
17 1r4i_A Androgen receptor; AR, 99.9 4.5E-25 1.5E-29 144.2 2.2 59 2-60 30-88 (105)
18 1kb2_A Vitamin D3 receptor; VD 99.9 1.9E-25 6.7E-30 147.4 -0.6 59 2-60 29-87 (110)
19 2nll_B Protein (thyroid hormon 99.9 7.7E-25 2.6E-29 143.0 -0.7 60 2-61 24-85 (103)
20 2lze_A A primordial catalytic 99.8 3.5E-22 1.2E-26 125.3 2.0 52 2-54 26-77 (87)
21 1lbd_A RXR_LBD, retinoid X rec 99.8 4.3E-20 1.5E-24 145.1 11.0 72 165-236 85-158 (282)
22 1xdk_B RAR-beta, retinoic acid 99.7 1.4E-17 4.9E-22 131.8 12.6 76 162-237 70-147 (303)
23 3l0l_A Nuclear receptor ROR-ga 99.7 1.9E-17 6.5E-22 127.5 12.5 122 104-237 8-131 (248)
24 1nq7_A Nuclear receptor ROR-be 99.7 2.2E-17 7.4E-22 126.9 10.8 120 106-237 4-125 (244)
25 3n00_A REV-ERBA-alpha; reverba 99.7 1.6E-17 5.6E-22 127.4 7.1 125 107-237 15-141 (245)
26 1ovl_A Orphan nuclear receptor 99.7 3.3E-17 1.1E-21 128.0 8.2 74 162-235 73-148 (271)
27 1z5x_E Ecdysone receptor ligan 99.7 2.1E-16 7.2E-21 125.0 12.0 114 106-237 77-192 (310)
28 1n83_A Nuclear receptor ROR-al 99.7 3.1E-16 1.1E-20 122.1 12.4 122 104-237 17-140 (270)
29 2nxx_E Ecdysone receptor (ECR, 99.7 1.3E-15 4.5E-20 117.3 12.8 114 106-237 13-128 (248)
30 2r40_D Ecdysone receptor, 20-h 99.6 1.4E-15 4.8E-20 118.2 11.5 117 105-237 26-144 (266)
31 3ipq_A Oxysterols receptor LXR 99.6 8.8E-16 3E-20 120.4 10.4 119 104-236 43-163 (283)
32 3ilz_A Thyroid hormone recepto 99.6 1.2E-15 4E-20 118.7 10.3 126 105-237 19-146 (267)
33 3vi8_A Peroxisome proliferator 99.6 1.7E-15 6E-20 117.8 9.9 129 106-234 7-148 (273)
34 3v3e_B Nuclear receptor subfam 99.6 1.6E-15 5.4E-20 117.1 9.2 74 163-236 52-127 (257)
35 1fcy_A RAR-gamma-1, retinoic a 99.6 1.1E-14 3.8E-19 111.3 12.4 75 162-236 43-119 (236)
36 3b0t_A Vitamin D3 receptor; nu 99.6 4.9E-15 1.7E-19 114.6 10.0 121 105-235 8-131 (254)
37 3kmr_A Retinoic acid receptor 99.6 1.3E-14 4.4E-19 112.7 12.2 115 106-237 28-144 (266)
38 1xvp_B Orphan nuclear receptor 99.6 1.2E-14 4E-19 111.9 11.5 119 105-234 6-126 (246)
39 2o4j_A Vitamin D3 receptor; nu 99.6 1.1E-14 3.7E-19 114.6 10.9 121 105-235 11-134 (292)
40 3cqv_A Nuclear receptor subfam 99.6 1.1E-14 3.6E-19 108.6 10.0 75 163-237 20-96 (199)
41 1pdu_A DHR38, nuclear hormone 99.6 9.7E-15 3.3E-19 112.0 10.0 75 161-235 45-121 (244)
42 3u9q_A Peroxisome proliferator 99.5 8E-14 2.7E-18 108.3 12.7 131 107-237 4-148 (269)
43 1l2j_A Estrogen receptor beta; 99.5 1E-14 3.5E-19 113.6 5.8 72 163-234 59-132 (271)
44 3ltx_A Estrogen receptor; cons 99.5 5.2E-14 1.8E-18 108.0 9.1 76 161-236 34-112 (243)
45 2e2r_A Estrogen-related recept 99.5 1.4E-13 4.7E-18 105.7 9.4 74 163-236 48-123 (244)
46 3oll_A Estrogen receptor beta; 99.5 7.4E-14 2.5E-18 107.0 7.9 74 162-235 32-107 (240)
47 3k6p_A Steroid hormone recepto 99.5 1.2E-13 4E-18 106.3 8.7 73 164-236 49-123 (248)
48 2hc4_A Vitamin D receptor; alp 99.5 2.5E-13 8.7E-18 107.2 10.5 76 160-235 99-177 (302)
49 3vhv_A Mineralocorticoid recep 99.5 2E-13 6.7E-18 105.7 9.0 75 162-236 39-117 (260)
50 3vhu_A Mineralocorticoid recep 99.5 2.7E-13 9.3E-18 106.4 9.6 75 162-236 73-151 (294)
51 2iz2_A FTZ-F1 alpha, nuclear h 99.4 1.1E-13 3.6E-18 106.2 6.6 73 164-236 47-123 (243)
52 1xpc_A Estrogen receptor; nucl 99.4 1.8E-13 6.3E-18 105.3 7.6 71 164-234 36-108 (248)
53 2ocf_A Estrogen receptor; estr 99.4 2.3E-13 7.9E-18 107.1 8.1 73 163-235 44-118 (298)
54 1yye_A ER-beta, estrogen recep 99.4 2.5E-13 8.4E-18 105.6 8.1 72 163-234 31-104 (268)
55 1g2n_A Ultraspiracle protein; 99.4 2.2E-13 7.7E-18 105.8 7.6 74 163-236 42-135 (264)
56 3plz_A FTZ-F1 related protein; 99.4 2.4E-13 8.3E-18 105.0 7.3 73 164-236 57-133 (257)
57 3mnp_A Glucocorticoid receptor 99.4 4.4E-13 1.5E-17 103.7 8.7 75 162-236 41-119 (261)
58 1t7r_A Androgen receptor; nucl 99.4 4.7E-13 1.6E-17 104.2 8.8 74 163-236 49-126 (269)
59 2nxx_A Ultraspiracle (USP, NR2 99.4 1.9E-13 6.4E-18 104.5 6.5 70 165-234 39-110 (235)
60 1ymt_A Steroidogenic factor 1; 99.4 3.1E-13 1.1E-17 103.9 7.4 71 165-235 47-121 (246)
61 3tx7_B Nuclear receptor subfam 99.4 5.9E-13 2E-17 106.8 6.3 74 163-236 151-228 (352)
62 1nrl_A Orphan nuclear receptor 99.4 3.2E-13 1.1E-17 106.9 4.3 72 161-233 118-191 (316)
63 1sqn_A PR, progesterone recept 99.4 1.2E-12 4E-17 101.4 7.3 73 163-235 41-117 (261)
64 2p1t_A Retinoic acid receptor 99.4 1.5E-12 5.2E-17 99.8 7.9 72 165-236 43-116 (240)
65 3gyt_A Nuclear hormone recepto 99.4 3.2E-12 1.1E-16 97.5 9.5 61 167-227 45-107 (244)
66 1hg4_A Ultraspiracle; nuclear 99.3 1.5E-12 5E-17 102.0 6.5 69 164-232 48-126 (279)
67 1osh_A BIle acid receptor; nuc 99.3 5.1E-12 1.7E-16 96.3 7.9 88 106-216 8-95 (232)
68 3up3_A Acedaf-12; ligand bindi 99.3 5E-12 1.7E-16 96.7 7.4 69 167-235 45-118 (243)
69 1pzl_A Hepatocyte nuclear fact 99.3 3E-12 1E-16 97.9 5.3 69 165-233 43-113 (237)
70 3cjw_A COUP transcription fact 99.2 3.3E-12 1.1E-16 98.1 3.6 66 165-230 39-107 (244)
71 3p0u_A Nuclear receptor subfam 99.2 4.4E-12 1.5E-16 97.6 3.8 65 165-229 36-103 (249)
72 3f5c_B Nuclear receptor subfam 99.1 5.2E-11 1.8E-15 92.3 5.3 52 165-216 49-100 (268)
73 2ll1_A U1-TRTX-SP1A; toxin; NM 59.4 1.1 3.8E-05 20.8 -0.8 8 36-43 24-31 (33)
74 1x5v_A PCFK1; inhibitory cysti 54.5 1.7 5.9E-05 20.5 -0.6 22 22-43 7-30 (34)
75 2hlg_A Fruit-specific protein; 49.6 3.1 0.00011 20.7 -0.2 21 16-41 4-25 (39)
76 1uw0_A DNA ligase III; DNA rep 45.5 14 0.00047 24.2 2.4 21 183-203 73-93 (117)
77 3odc_A Poly [ADP-ribose] polym 43.4 8.9 0.00031 24.9 1.2 21 183-203 75-95 (111)
78 1v9x_A Poly (ADP-ribose) polym 41.9 13 0.00044 24.3 1.8 23 181-203 67-89 (114)
79 2lke_A Integrin alpha-M; myris 40.6 7.8 0.00027 17.8 0.4 6 4-9 3-8 (26)
80 3od8_A Poly [ADP-ribose] polym 39.6 10 0.00034 24.8 1.0 20 184-203 89-108 (116)
81 2dmj_A Poly (ADP-ribose) polym 37.5 16 0.00054 23.4 1.7 20 184-203 76-95 (106)
82 1ei0_A P8MTCP1; helix-turn-hel 36.6 9.3 0.00032 19.4 0.4 11 35-45 6-16 (38)
83 1vp6_A CNBD, cyclic-nucleotide 36.5 32 0.0011 22.2 3.3 30 175-204 5-34 (138)
84 3mg1_A OCP, orange carotenoid 34.8 18 0.0006 28.0 1.8 21 189-209 28-48 (323)
85 2d93_A RAP guanine nucleotide 31.7 24 0.00081 22.9 1.9 27 177-203 12-38 (134)
86 2cs2_A Poly [ADP-ribose] polym 30.5 21 0.00072 24.0 1.5 21 183-203 83-103 (134)
87 4av1_A Poly [ADP-ribose] polym 28.9 12 0.0004 27.7 0.0 41 163-203 176-219 (223)
88 2knc_A Integrin alpha-IIB; tra 26.2 15 0.0005 20.4 0.1 7 4-10 37-43 (54)
89 2l8s_A Integrin alpha-1; trans 26.0 14 0.00047 20.4 -0.0 7 4-10 34-40 (54)
90 3mg1_A OCP, orange carotenoid 24.8 1.5E+02 0.0052 23.0 5.4 47 158-210 103-163 (323)
91 2lg7_A Uncharacterized protein 24.7 12 0.00042 23.0 -0.5 24 217-240 106-129 (129)
92 3ocp_A PRKG1 protein; serine/t 23.9 70 0.0024 20.6 3.2 25 179-203 21-45 (139)
93 1hp8_A HU-P8; leukemia, cystei 23.6 21 0.00071 20.8 0.4 11 35-45 10-20 (68)
94 3pp5_A BRK1, protein brick1; t 21.9 80 0.0028 18.6 2.7 29 160-188 13-41 (73)
95 1fyg_A Omega conotoxin SO3; be 21.8 36 0.0012 15.4 1.0 20 21-42 5-25 (26)
96 2z69_A DNR protein; beta barre 21.4 97 0.0033 20.1 3.6 25 179-203 10-34 (154)
97 1v4q_A Omega-conotoxin MVIIC; 21.2 33 0.0011 15.8 0.8 20 21-42 5-26 (27)
98 3pna_A CAMP-dependent protein 20.8 79 0.0027 20.8 3.1 25 179-203 36-60 (154)
99 1oig_A Dumpy, CG33196-PB; stru 20.5 12 0.00042 17.2 -0.8 20 18-44 4-23 (26)
100 3p8c_E Probable protein brick1 20.3 90 0.0031 18.5 2.7 29 160-188 13-41 (75)
No 1
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=100.00 E-value=1.8e-35 Score=243.47 Aligned_cols=209 Identities=28% Similarity=0.531 Sum_probs=140.3
Q ss_pred CcchhhhhhccCCeeE-eccCCccccccCCcccchhcchhhhHHhCCCccccccCCCCcccccccccccCCCcccCCCCC
Q psy7884 2 FQGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRERSDSETGSTRVSTTGAE 80 (240)
Q Consensus 2 Ck~FFRRsv~~~~~~~-C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 80 (240)
||+||||+|..+..|. |. ++|.+++..|+.|++|||+||+++||++++||.+|.+.+.+.+......... .
T Consensus 73 C~~FFrR~~~~~~~~~~c~--~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~vq~~R~~~~~k~~~~~~~~~~~-----~- 144 (419)
T 3dzy_D 73 CKGFFRRTIRLKLIYDRCD--LNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAEKEKLLAEISSDI-----D- 144 (419)
T ss_dssp HHHHHHHHHTTTCCCCCCC--SCCCCCTTGGGTCHHHHHHHHHHTTCCGGGCCCSCCTTTTGGGSTTTTTSTT-----T-
T ss_pred hhHHHccchhccccccccc--CCCCcccccCccchhhhHHHHhhcccchhheecccccccccccccccccccc-----c-
Confidence 9999999999999995 63 6899999999999999999999999999999999998765443222111000 0
Q ss_pred CCCCCCCCCCCCCCCCCcccCcchhhhHHHHHHHHHhhhccCCCCHHHhhhhcCCCCCC--C-----------CCCCCCc
Q psy7884 81 PPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSL--P-----------PSEVSSP 147 (240)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~~ 147 (240)
...+.......++..+..+|..++.++......+....... + ..+....
T Consensus 145 ------------------~~~p~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~l~~ae~~~~~ 206 (419)
T 3dzy_D 145 ------------------QLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKF 206 (419)
T ss_dssp ------------------TSCSTTHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHCCSSSCCCEEECSHHHHHCCC-----
T ss_pred ------------------CCCCchhhHHHHHHHHHHhhhccCCccchhccccccCCCCCCCCcccccchhhhhccccccc
Confidence 00111223445667777888887777665443332111000 0 0000000
Q ss_pred cccCchhhhhhhhHHHHHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcccCCCceEecCC
Q psy7884 148 EVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227 (240)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~~~~~~l~~~~G 227 (240)
.................|..+...+...|..+|+|||.+|+|.+|+.+||++|||++|+|+++|+.++....+++++.+|
T Consensus 207 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~w~Ell~L~~a~~~~~~~~~~~~~ 286 (419)
T 3dzy_D 207 KHITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEG 286 (419)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTTTSCHHHHHHHHHHHHHHHHHHHHGGGBCSSEEEEGGG
T ss_pred ccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeecC
Confidence 00000000011123356777777777888899999999999999999999999999999999999998877788888777
Q ss_pred e-eecHHHHh
Q psy7884 228 M-YVTRQQLE 236 (240)
Q Consensus 228 ~-~i~~~~~~ 236 (240)
. ++.++.++
T Consensus 287 ~~~~~~~~~~ 296 (419)
T 3dzy_D 287 QGFMTREFLK 296 (419)
T ss_dssp TEEEEHHHHH
T ss_pred cccccHHHHH
Confidence 5 45665544
No 2
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=100.00 E-value=1.8e-36 Score=252.04 Aligned_cols=183 Identities=32% Similarity=0.587 Sum_probs=122.4
Q ss_pred CcchhhhhhccCCeeEeccCCccccccCCcccchhcchhhhHHhCCCccccccCCCCcccccccccccCCCcccCCCCCC
Q psy7884 2 FQGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRERSDSETGSTRVSTTGAEP 81 (240)
Q Consensus 2 Ck~FFRRsv~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (240)
||+||||+|.++..|.|+++++|.+++..|++||+|||+||+++||++++||.+|++.+.+..... . +...
T Consensus 160 Ck~FFrR~~~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~k~r~~~~~--~-----~~~~-- 230 (467)
T 3dzy_A 160 CKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEV--E-----STSS-- 230 (467)
T ss_dssp HHHHHHHHHHTTCCCCCSSSSCCCCCSSSSSSCHHHHHHHHHHTTCCGGGCCCCSCCCCCCSCSSC--T-----TSTT--
T ss_pred hhHhccccccCCCceeCCCCCCCCCCcccccccccchhhhhhhccccchhhhcccccccccccccc--c-----cccc--
Confidence 999999999999999999999999999999999999999999999999999999987643221100 0 0000
Q ss_pred CCCCCCCCCCCCCCCCcccCcchhhhHHHHHHHHHhhhccCCCCHHHhhhhcCCCCCCCCCCCCCccccCchhhhhhhhH
Q psy7884 82 PSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQR 161 (240)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (240)
. ... .....++............+...... .. ......
T Consensus 231 ------~----------~~~---~~~~~ll~a~~~~e~~~~~~~~~~~~--------~~---~~~~~~------------ 268 (467)
T 3dzy_A 231 ------A----------NED---MPVERILEAELAVEPKTETYVEANMG--------LN---PSSPND------------ 268 (467)
T ss_dssp ------C----------SCS---SCHHHHHHHHHC---------------------------------------------
T ss_pred ------c----------CCC---Cchhhhhhhhhhhcccchhhhhhccc--------CC---CCcccc------------
Confidence 0 000 00111211111111100000000000 00 000000
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHHHhh
Q psy7884 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLEV 237 (240)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~~~~ 237 (240)
.+..+.+++..++..+|+|||.||+|.+|+.+||++|||++|++++++..+++ ...+++++++|..+.++.++.
T Consensus 269 --~~~~l~e~a~~~L~~vVeWAK~iP~F~~L~~~DQi~LLK~~w~elliL~~a~rs~~~~~~~ll~~g~~i~~~~~~~ 344 (467)
T 3dzy_A 269 --PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHS 344 (467)
T ss_dssp --CCTTHHHHHHHHHHHHHHHHHHSTTSTTSCHHHHHHHHHHHHHHHHHHHHHHHTSSSTTBCCCSSSCCCBTHHHHT
T ss_pred --hHHHHHHHHHHHHHHHHHHHHhCcchhcCCHHHHHHHHHhHHHHHHHHHHHHHhccCCCceEecCCceechhhhhh
Confidence 01233455666788899999999999999999999999999999999999987 567889999999998877653
No 3
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=99.93 E-value=4.8e-27 Score=145.65 Aligned_cols=56 Identities=43% Similarity=0.920 Sum_probs=52.8
Q ss_pred CcchhhhhhccCCeeEeccCCccccccCCcccchhcchhhhHHhCCCccccccCCC
Q psy7884 2 FQGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRV 57 (240)
Q Consensus 2 Ck~FFRRsv~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~ 57 (240)
||+||||+|..+..|.|+.+++|.|++..|+.|++|||+||+++||++++||.+|+
T Consensus 23 Ck~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~Rd 78 (78)
T 3cbb_A 23 CKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERD 78 (78)
T ss_dssp HHHHHHHHHHTTCCCCCSSCSCCCCSTTTTTTCHHHHHHHHHHHTCCGGGCCCC--
T ss_pred hceeeeEEEecccCcccccccccCcCccccccChhhhhHHHhHcCCCHHHccccCC
Confidence 89999999999999999999999999999999999999999999999999999885
No 4
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=99.92 E-value=5.9e-27 Score=148.64 Aligned_cols=59 Identities=42% Similarity=0.965 Sum_probs=56.5
Q ss_pred CcchhhhhhccCCeeEeccCCccccccCCcccchhcchhhhHHhCCCccccccCCCCcc
Q psy7884 2 FQGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60 (240)
Q Consensus 2 Ck~FFRRsv~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~~~ 60 (240)
||+||||+|..+..|.|+.+++|.|++..|+.|++|||+||++|||++++||.+|++..
T Consensus 30 Ck~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~~ 88 (89)
T 2ebl_A 30 CKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGSGPSS 88 (89)
T ss_dssp HHHHHHHHHTTTCCCCCSSCSCCCCCSSSSSCCSHHHHHHHHHHTCCHHHHSCSCCCCC
T ss_pred hhhhhheeeeeccceecccCccCCcCccCccccccchHHHhhhccCCHHHcccCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999998754
No 5
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=99.92 E-value=8.9e-27 Score=150.83 Aligned_cols=62 Identities=44% Similarity=1.007 Sum_probs=51.1
Q ss_pred CcchhhhhhccCCeeEeccCCccccccCCcccchhcchhhhHHhCCCccccccCCCCccccc
Q psy7884 2 FQGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRE 63 (240)
Q Consensus 2 Ck~FFRRsv~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~~~~~~ 63 (240)
||+||||+|..+..|.|+.+++|.|++..|+.|++|||+||++|||++++||.+|++.+.+.
T Consensus 26 Ck~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~~~~~ 87 (99)
T 1ynw_B 26 CKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRN 87 (99)
T ss_dssp HHHHHHHHHHTTCCCCCSSSSCCCCCSTTSSSCHHHHHHHHHHTTCCSTTCC----------
T ss_pred HHHHHHhhhccccccccCCCCcccccccCCccCccccHHHHhHcCCCHHHhhhccccccccC
Confidence 89999999999999999999999999999999999999999999999999999999877543
No 6
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=99.92 E-value=1e-26 Score=146.41 Aligned_cols=57 Identities=46% Similarity=1.050 Sum_probs=55.1
Q ss_pred CcchhhhhhccCCeeEeccCCccccccCCcccchhcchhhhHHhCCCccccccCCCC
Q psy7884 2 FQGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVP 58 (240)
Q Consensus 2 Ck~FFRRsv~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~ 58 (240)
||+||||+|..+..|.|+.+++|.|++..|+.|++|||+||++|||++++||.+|++
T Consensus 28 Ck~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~ 84 (85)
T 1dsz_B 28 CKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR 84 (85)
T ss_dssp HHHHHHHHHHHTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCCCCC
T ss_pred HHHHHHHhhccccceeecccccccccccccccCcchhHHHHhHcCCCHHHhhcccCC
Confidence 899999999999999999999999999999999999999999999999999999975
No 7
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=99.92 E-value=1.1e-26 Score=146.80 Aligned_cols=59 Identities=56% Similarity=1.130 Sum_probs=53.0
Q ss_pred CcchhhhhhccCCeeEeccCCccccccCCcccchhcchhhhHHhCCCccccccCCCCcc
Q psy7884 2 FQGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60 (240)
Q Consensus 2 Ck~FFRRsv~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~~~ 60 (240)
||+||||+|..+..|.|..+++|.|++..|+.|++|||+||+++||++++||.+|++++
T Consensus 27 Ck~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~k 85 (86)
T 1dsz_A 27 CKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK 85 (86)
T ss_dssp HHHHHHHHHHTTCCCCCSSCSCCCCSTTTGGGCHHHHHHHHHHTTCCGGGSCCC-----
T ss_pred HHHHHHHHhhcccceeeccCCccccCccccccchhhhHHHHHHhCCCHHHhhhcccccc
Confidence 89999999999999999999999999999999999999999999999999999998765
No 8
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=99.92 E-value=1.4e-26 Score=148.29 Aligned_cols=59 Identities=41% Similarity=0.980 Sum_probs=53.9
Q ss_pred CcchhhhhhccCCeeEeccCCccccccCCcccchhcchhhhHHhCCCccccccCCCCcc
Q psy7884 2 FQGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60 (240)
Q Consensus 2 Ck~FFRRsv~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~~~ 60 (240)
||+||||+|..+..|.|+.+++|.|++..|+.|++|||+|||+|||++++||.+|++.+
T Consensus 33 Ck~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~~ 91 (93)
T 2han_A 33 CKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAVQEERQGIH 91 (93)
T ss_dssp HHHHHHHHHHHTCCCCCSSCSCCCCSTTTGGGCHHHHHHHHHHHTCCGGGSCCCC----
T ss_pred HHHHHHhhhccccCcCcCCCCcCCcCCCCCccCccccHHHHhHhCCCHHHhhhccCccc
Confidence 89999999999999999999999999999999999999999999999999999998755
No 9
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=99.92 E-value=1.4e-26 Score=148.63 Aligned_cols=62 Identities=66% Similarity=1.363 Sum_probs=53.4
Q ss_pred CcchhhhhhccCCee-EeccCCccccccCCcccchhcchhhhHHhCCCccccccCCCCccccc
Q psy7884 2 FQGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRE 63 (240)
Q Consensus 2 Ck~FFRRsv~~~~~~-~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~~~~~~ 63 (240)
||+||||+|..+..| .|..+++|.|++..|+.|++|||+||+++||++++||.+|++++.+.
T Consensus 30 Ck~FFRR~v~~~~~y~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~~~k~ 92 (94)
T 1a6y_A 30 CKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQ 92 (94)
T ss_dssp HHHHHHHHHSSCCCCCCCSSTTCCCCCTTTTTSCHHHHHHHHTTTTCCSTTCCCCC-------
T ss_pred hhhehheeeecccceEEccCCCCCccCccccccccchhHHHhhHccCCHHHhccCcCcCchhc
Confidence 899999999999999 59999999999999999999999999999999999999999887554
No 10
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=99.91 E-value=2.1e-26 Score=148.81 Aligned_cols=62 Identities=40% Similarity=0.795 Sum_probs=58.1
Q ss_pred CcchhhhhhccCCeeEeccCCccccccCCcccchhcchhhhHHhCCCccccccCCCCccccc
Q psy7884 2 FQGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRE 63 (240)
Q Consensus 2 Ck~FFRRsv~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~~~~~~ 63 (240)
||+||||+|..+..|.|+.+++|.|++..|+.|++|||+||++|||++++||.+|++..+.+
T Consensus 27 Ck~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~~r~k 88 (98)
T 1lo1_A 27 CKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKALKVGMLKEGVRLDRVRGGRQK 88 (98)
T ss_dssp HHHHHHHHHHTTCCCCCSSCSCCCCCHHHHHHCHHHHHHHHHHHTCCGGGSCSSCCTTCCCC
T ss_pred hhhhheeeecccCccccCccccccccccccccccchhHHHHhHcCCCHHHeecccccCcccc
Confidence 89999999999999999999999999999999999999999999999999999998766544
No 11
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=99.91 E-value=3.9e-26 Score=143.46 Aligned_cols=56 Identities=38% Similarity=0.804 Sum_probs=47.1
Q ss_pred CcchhhhhhccCCeeEeccCCccccccCCcccchhcchhhhHHhCCCccccccCCC
Q psy7884 2 FQGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRV 57 (240)
Q Consensus 2 Ck~FFRRsv~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~ 57 (240)
||+||||+|+.+..|.|+.+++|.|++..|+.|++|||+||+++||++++||.+|.
T Consensus 27 Ck~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 82 (84)
T 1hcq_A 27 CKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDRR 82 (84)
T ss_dssp HHHHHHHHHSSCCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCC--------
T ss_pred hhhhhhhccccccccccccCccCCcCCcCcccChhhhhHHHhHcCCCHHHhcccCC
Confidence 89999999999999999999999999999999999999999999999999998884
No 12
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.91 E-value=7.9e-26 Score=143.64 Aligned_cols=59 Identities=49% Similarity=1.006 Sum_probs=55.0
Q ss_pred CcchhhhhhccCCeeEeccCCccccccCCcccchhcchhhhHHhCCCccccccCCCCcc
Q psy7884 2 FQGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60 (240)
Q Consensus 2 Ck~FFRRsv~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~~~ 60 (240)
||+||||+|..+..|.|..+++|.|++..|+.|++|||+||+++||++++||.++...+
T Consensus 23 Ck~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~~~~~~ 81 (89)
T 1cit_A 23 CKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGR 81 (89)
T ss_dssp HHHHHHHHHHHTCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHTTCCGGGSCCGGGTTC
T ss_pred hhhhceeeEEecceeeeccCCccccCCCCcccChhhhhHHHhHcCCCHHHeecccccCc
Confidence 89999999999999999999999999999999999999999999999999998765443
No 13
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=99.91 E-value=1.9e-25 Score=147.71 Aligned_cols=61 Identities=39% Similarity=0.932 Sum_probs=57.5
Q ss_pred CcchhhhhhccCCeeEeccCCccccccCCcccchhcchhhhHHhCCCccccccCCCCcccc
Q psy7884 2 FQGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62 (240)
Q Consensus 2 Ck~FFRRsv~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~~~~~ 62 (240)
||+||||+|..+..|.|+.+++|.|++..|+.|++|||+||++|||++++||.+|++..+.
T Consensus 32 Ck~FFRR~v~~~~~y~C~~~~~C~i~~~~R~~Cr~CR~~KCl~vGM~~~~vq~~R~~~~r~ 92 (113)
T 2a66_A 32 CKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRN 92 (113)
T ss_dssp HHHHHHHHHHTTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCTTCCCSSCC
T ss_pred HHHHHhhhhhccccccccccccCCcCCCccccccchhHHHHhHhCCCHHHhccccccCCCC
Confidence 8999999999999999999999999999999999999999999999999999999876543
No 14
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=99.90 E-value=2.6e-25 Score=147.80 Aligned_cols=59 Identities=29% Similarity=0.729 Sum_probs=49.1
Q ss_pred CcchhhhhhccCCeeEeccCCccccccCCcccchhcchhhhHHhCCCccccccCCCCcc
Q psy7884 2 FQGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60 (240)
Q Consensus 2 Ck~FFRRsv~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~~~ 60 (240)
||+||||+|..+..|.|+.+++|.|++..|..|++|||+||+++||++++||.+|..++
T Consensus 52 Ck~FFRRsv~~~~~y~C~~~~~C~i~~~~r~~Cr~CRl~KCl~vGM~~~avq~kR~~k~ 110 (117)
T 4hn5_A 52 CKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKG 110 (117)
T ss_dssp HHHHHHHHHSSCCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCTTC---------
T ss_pred hhhhhhcceecCCceecCCCCccccCcccccCCcccchHHHhHcCCCHHHhcccccccc
Confidence 89999999999999999999999999999999999999999999999999999886554
No 15
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=99.90 E-value=1.8e-25 Score=142.93 Aligned_cols=60 Identities=28% Similarity=0.707 Sum_probs=53.7
Q ss_pred CcchhhhhhccCCeeEeccCCccccccCCcccchhcchhhhHHhCCCccccccCCCCccc
Q psy7884 2 FQGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61 (240)
Q Consensus 2 Ck~FFRRsv~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~~~~ 61 (240)
||+||||+|..+..|.|..+++|.+++..|..|++|||+|||++||++++||.+|..+..
T Consensus 25 Ck~FFRR~v~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~avq~~r~~~~~ 84 (90)
T 3g9m_A 25 CKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKGI 84 (90)
T ss_dssp HHHHHHHHHHSCCCCCCSSSSCCCCCTTGGGTCHHHHHHHHHHHTCCTTHHHHHC-----
T ss_pred HhHHhhhhhhcCCceeCCCCCccccCcccccCCcchhhHHHHHcCCCHHHhccccccccc
Confidence 899999999999999999999999999999999999999999999999999998866553
No 16
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=99.90 E-value=2e-25 Score=149.60 Aligned_cols=58 Identities=41% Similarity=0.691 Sum_probs=55.3
Q ss_pred CcchhhhhhccCCeeEeccCCccccccCCcccchhcchhhhHHhCCCccccccCCCCc
Q psy7884 2 FQGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPK 59 (240)
Q Consensus 2 Ck~FFRRsv~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~~ 59 (240)
||+||||+|..+..|.|+.+++|.|++..|+.|++|||+||+++||++++||.++...
T Consensus 31 Ck~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~~ 88 (119)
T 2han_B 31 CKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCA 88 (119)
T ss_dssp HHHHHHHHHHTTCCCCCSSCSCCCCSTTGGGTCHHHHHHHHHHTTCCGGGSSCSSHHH
T ss_pred hHHhhhhheEeccccccccccccccCccccccchhhHHHHHHHhCCCHHHccchhhhh
Confidence 8999999999999999999999999999999999999999999999999999988754
No 17
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.90 E-value=4.5e-25 Score=144.23 Aligned_cols=59 Identities=24% Similarity=0.648 Sum_probs=49.0
Q ss_pred CcchhhhhhccCCeeEeccCCccccccCCcccchhcchhhhHHhCCCccccccCCCCcc
Q psy7884 2 FQGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60 (240)
Q Consensus 2 Ck~FFRRsv~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~~~ 60 (240)
||+||||+|..+..|.|+.+++|.|++..|+.|++|||+||+++||++++++..+.+..
T Consensus 30 Ck~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~~k~~k~~~~ 88 (105)
T 1r4i_A 30 CKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGARKLKKLGNL 88 (105)
T ss_dssp HHHHHHHHHTSCCCCCCSSSSCCCCCTTTTTTCHHHHHHHHHHHTCCSCC---------
T ss_pred hhhhhceeEEecCceeeccCCccccCccccccchhchHHHHHhhhcccchhhhcccccc
Confidence 89999999999999999999999999999999999999999999999999888776543
No 18
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=99.90 E-value=1.9e-25 Score=147.37 Aligned_cols=59 Identities=34% Similarity=0.813 Sum_probs=55.2
Q ss_pred CcchhhhhhccCCeeEeccCCccccccCCcccchhcchhhhHHhCCCccccccCCCCcc
Q psy7884 2 FQGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60 (240)
Q Consensus 2 Ck~FFRRsv~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~~~ 60 (240)
||+||||+|..+..|.|+.+++|.|++..|+.|++|||+||+++||++++|+.+|....
T Consensus 29 Ck~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~v~~~r~~q~ 87 (110)
T 1kb2_A 29 CKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQR 87 (110)
T ss_dssp HHHHHHHHHHTTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCHHHHHH
T ss_pred hhhhheeeeecccceeeCCCCCccCCcccceecccccHhhhhhcCCcHHhcccHHHHhh
Confidence 89999999999999999999999999999999999999999999999999998876543
No 19
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=99.88 E-value=7.7e-25 Score=142.96 Aligned_cols=60 Identities=47% Similarity=0.917 Sum_probs=55.4
Q ss_pred CcchhhhhhccCC--eeEeccCCccccccCCcccchhcchhhhHHhCCCccccccCCCCccc
Q psy7884 2 FQGFFRRSIQKQI--EYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61 (240)
Q Consensus 2 Ck~FFRRsv~~~~--~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~~~~ 61 (240)
||+||||+|..+. .|.|..+++|.|++..|..|++|||+||++|||++++||.++....+
T Consensus 24 Ck~FFRR~v~~~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~~~~~~k 85 (103)
T 2nll_B 24 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAK 85 (103)
T ss_dssp HHHHHHHHHHTTCGGGCCCSSCTTCCCSTTTTTSCHHHHHHHHHHTTCCGGGSCCHHHHHHH
T ss_pred hhhhheecccccccchhhhhccCCcCcCccCccccchhhhHhhhHhCCCHHHhhhhhhhHHh
Confidence 8999999999886 79999999999999999999999999999999999999998865543
No 20
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=99.84 E-value=3.5e-22 Score=125.34 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=47.1
Q ss_pred CcchhhhhhccCCeeEeccCCccccccCCcccchhcchhhhHHhCCCcccccc
Q psy7884 2 FQGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRY 54 (240)
Q Consensus 2 Ck~FFRRsv~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~ 54 (240)
|++||||++ ++..|+|+.+++|.|++..|++|++|||+|||+|||+...+..
T Consensus 26 ~asfFRRt~-~~~~y~C~~~~~C~i~~~~R~~C~~CR~qKCl~VgM~~~~~~~ 77 (87)
T 2lze_A 26 NAEDYKHTD-MDLTYTDRDYKNCESYHKCSDLCQYCRYQKDLAIHHQHHHGGS 77 (87)
T ss_dssp SSSSCTTTT-TSCTTTSCCCCCCCCSSCCSSSCSGGGTSCCHHHHCSSCCCCC
T ss_pred ccceECccc-CCCeeEcCCCCccccCCCccCcCCcccChhhccCcCEeccCcc
Confidence 799999995 6788999999999999999999999999999999998876543
No 21
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=99.82 E-value=4.3e-20 Score=145.10 Aligned_cols=72 Identities=29% Similarity=0.499 Sum_probs=65.4
Q ss_pred HHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHHHh
Q psy7884 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLE 236 (240)
Q Consensus 165 ~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~~~ 236 (240)
+..+.+++...+..+|+|||.+|+|.+|+.+||++|||++|++++++..+++ ...+++++++|.+++++.+.
T Consensus 85 ~~~~~~~a~~~l~~~vewaK~ip~F~~L~~~DQ~~LLk~~~~el~il~~a~rs~~~~~~~~~~~g~~~~~~~~~ 158 (282)
T 1lbd_A 85 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAH 158 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHGGGGSSSEEECTTSCEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHHhcccCCCceEecCCcccccchhh
Confidence 6788889999999999999999999999999999999999999999999976 55788999999999887554
No 22
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=99.75 E-value=1.4e-17 Score=131.77 Aligned_cols=76 Identities=36% Similarity=0.660 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHHHhh
Q psy7884 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLEV 237 (240)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~~~~ 237 (240)
...|.++.+++...+..+|+|||.+|+|.+|+.+||++|||++|+++++|+.+++ ...+.++|++|..++++.++.
T Consensus 70 ~~~~~~~~~~~~~~l~~~VewaK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~s~~~~~~l~~~~g~~~~~~~~~~ 147 (303)
T 1xdk_B 70 LGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN 147 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTEETTTTEEECTTCBEEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccccCCHHHHHHHHHhhHHHHHHHHHHHHhcccCCeEEecCCceecHHHHhh
Confidence 3569999999999999999999999999999999999999999999999999998 556899999999999887653
No 23
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=99.74 E-value=1.9e-17 Score=127.47 Aligned_cols=122 Identities=26% Similarity=0.426 Sum_probs=97.8
Q ss_pred hhhhHHHHHHHHHhhhccCCCCHHHhhhhcCCCCCCCCCCCCCccccCchhhhhhhhHHHHHHHHHHHHhHHHHHHHhhh
Q psy7884 104 QLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFA 183 (240)
Q Consensus 104 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iefa 183 (240)
-.+...+++.|.++|.++|.|+.+.+..+..... .... ........+...|.++.+.++..+..+|+||
T Consensus 8 ~~~~~~l~~~i~~ah~~t~~~~~e~~~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~Vewa 76 (248)
T 3l0l_A 8 LTEIEHLVQSVCKSYRETCQLRLEDLLRQRSNIF--------SREE---VTGYQRKSMWEMWERCAHHLTEAIQYVVEFA 76 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCHHHHHHTTTCBC--------CHHH---HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHcCCcHHHHHHHcccCC--------Cccc---cccccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999988764332 1111 1111233567889999999999999999999
Q ss_pred cCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHHHhh
Q psy7884 184 KRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLEV 237 (240)
Q Consensus 184 k~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~~~~ 237 (240)
|.+|+|.+|+.+||++|||++|+++++++.+++ ...+.+.+ +|.+++.+.++.
T Consensus 77 K~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~~~~~~~-~g~~~~~~~~~~ 131 (248)
T 3l0l_A 77 KRLSGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNADNRTVFF-EGKYGGMELFRA 131 (248)
T ss_dssp HHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGGEETTTTEEEE-TTEEECGGGGGG
T ss_pred hcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcCCCCEEEe-CCCcccHHHHhh
Confidence 999999999999999999999999999999987 45566666 888887665543
No 24
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=99.73 E-value=2.2e-17 Score=126.93 Aligned_cols=120 Identities=31% Similarity=0.499 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHhhhccCCCCHHHhhhhcCCCCCCCCCCCCCccccCchhhhhhhhHHHHHHHHHHHHhHHHHHHHhhhcC
Q psy7884 106 LTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKR 185 (240)
Q Consensus 106 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iefak~ 185 (240)
+...++..+..+|.+++.++.+.++.+...+. .+.. ........+...|.++.+.+...+..+|+|||+
T Consensus 4 ~~~~l~~~i~~ah~~~~~~~~e~~~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~VewaK~ 72 (244)
T 1nq7_A 4 EIDRIAQNIIKSHLETCQYTMEELHQLAWQTH--------TYEE---IKAYQSKSREALWQQCAIQITHAIQYVVEFAKR 72 (244)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHTTCBC--------CHHH---HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHhhccCCCC--------Chhh---hcccccccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45778899999999999999999888765433 1111 111122345678999999999999999999999
Q ss_pred CcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHHHhh
Q psy7884 186 VPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLEV 237 (240)
Q Consensus 186 ~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~~~~ 237 (240)
+|+|.+|+.+||++|||++|+++++++.+++ ...+.+++ +|..++++.++.
T Consensus 73 lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~~~~~-~g~~~~~~~~~~ 125 (244)
T 1nq7_A 73 ITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLF-EGKYGGMQMFKA 125 (244)
T ss_dssp CHHHHTSCHHHHHHHHHHHHHHHHHHHHGGGEETTTTEEEE-TTEEEEGGGGGG
T ss_pred CCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcCCCCEEeE-CCEEecHHHHhh
Confidence 9999999999999999999999999999998 56788888 999998876654
No 25
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=127.41 Aligned_cols=125 Identities=30% Similarity=0.456 Sum_probs=71.7
Q ss_pred hHHHHHHHHHhhhccCCCCHHHhhhhcCCCCCCCCCCCCCccccCchhhhhhhhHHHHHHHHHHHHhHHHHHHHhhhcCC
Q psy7884 107 TYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRV 186 (240)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iefak~~ 186 (240)
.+++|..|..+|+.+|.|+.++++..... .........+.+.. ...+.....|..+.+.++..+..+|+|||.+
T Consensus 15 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~---~~~~s~~~~~~~~~~~~~~~l~~~VewAK~l 88 (245)
T 3n00_A 15 VEDVISQVARAHREIFTYAHDKLGSSPGN---FNANHASGSPYPHG---RSGRTVQEIWEDFSMSFTPAVREVVEFAKHI 88 (245)
T ss_dssp HHHHHHHHHHHHHHHC--------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhHhhccchhhhccCCCCC---CCCcccCCCCCCcc---ccccCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 58999999999999999998888654321 11111111111000 0111122569999999999999999999999
Q ss_pred cCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHHHhh
Q psy7884 187 PGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLEV 237 (240)
Q Consensus 187 p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~~~~ 237 (240)
|+|.+|+.+||++|||++|+++++|+.+++ .+.+.+.|+||..++++.+..
T Consensus 89 P~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~l~~~~g~~~~~~~~~~ 141 (245)
T 3n00_A 89 PGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGA 141 (245)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCSCC--------------CCGG
T ss_pred CChhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCCeecHHHHhh
Confidence 999999999999999999999999999887 567889999999988766543
No 26
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=99.70 E-value=3.3e-17 Score=127.96 Aligned_cols=74 Identities=30% Similarity=0.486 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHHH
Q psy7884 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQL 235 (240)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~~ 235 (240)
...|.++.+++...+..+|+|||++|+|.+|+.+||++|||++|+++++|+.+++ ...++++|++|..++++++
T Consensus 73 ~~~~~~~~~~~~~~l~~~v~waK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~l~~~~g~~~~~~~~ 148 (271)
T 1ovl_A 73 TQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVEGKLIFCNGVVLHRLQC 148 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHSBTTTTEEECTTSBEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHhHHHHHHHHHHHHhcCCCCeEEeeCCeeecHHHH
Confidence 3569999999999999999999999999999999999999999999999999997 4567899999999887653
No 27
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=99.69 E-value=2.1e-16 Score=125.05 Aligned_cols=114 Identities=24% Similarity=0.288 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHhhhccCCCCHHHhhhhcCCCCCCCCCCCCCccccCchhhhhhhhHHHHHHHHHHHHhHHHHHHHhhhcC
Q psy7884 106 LTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKR 185 (240)
Q Consensus 106 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iefak~ 185 (240)
+...+|..+..+|.....+..+.+..+...+. .... .....|.++.+++...+..+|+|||.
T Consensus 77 eq~~lI~~lv~a~~~~~~p~~~~~~~~~~~p~----~~~~--------------~~~~~~~~l~el~~~~l~~~VewAK~ 138 (310)
T 1z5x_E 77 EQEELIHRLVYFQNEYEHPSPEDIKRIVNAAP----EEEN--------------VAEERFRHITEITILTVQLIVEFSKR 138 (310)
T ss_dssp TTHHHHHHHHHHHHHTSSCCHHHHHHHHTTCC----TTCC--------------SSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHhhccCCC----cccc--------------chhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 45788999999999988888887777654332 0000 11234999999999999999999999
Q ss_pred CcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHHHhh
Q psy7884 186 VPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLEV 237 (240)
Q Consensus 186 ~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~~~~ 237 (240)
+|+|.+|+.+||++|||++|+++++|+.|++ ...++++|++|..++++.+..
T Consensus 139 lP~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~~~~l~~~~g~~~~~~~~~~ 192 (310)
T 1z5x_E 139 LPGFDKLIREDQIALLKACSSEVMMFRMARRYDAETDSILFATNQPYTRESYTV 192 (310)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETTTTEEECTTSCEECHHHHHH
T ss_pred CcchhhCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeCCCccccHHHHHh
Confidence 9999999999999999999999999999998 578899999999998876543
No 28
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=99.69 E-value=3.1e-16 Score=122.06 Aligned_cols=122 Identities=29% Similarity=0.501 Sum_probs=96.0
Q ss_pred hhhhHHHHHHHHHhhhccCCCCHHHhhhhcCCCCCCCCCCCCCccccCchhhhhhhhHHHHHHHHHHHHhHHHHHHHhhh
Q psy7884 104 QLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFA 183 (240)
Q Consensus 104 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iefa 183 (240)
..+...++..+..+|.+++.++.+.+..+...+. .+.. ........+...|.++.+.+...+..+|+||
T Consensus 17 ~~e~~~li~~l~~ah~~t~~~~~~~~~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~Vewa 85 (270)
T 1n83_A 17 PAELEHLAQNISKSHLETCQYLREELQQITWQTF--------LQEE---IENYQNKQREVMWQLCAIKITEAIQYVVEFA 85 (270)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCHHHHHHTTTCBC--------CHHH---HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHcCCCHHHHHhhcCCCC--------Chhh---hcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445778999999999999999998877654322 1111 1111223456789999999999999999999
Q ss_pred cCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHHHhh
Q psy7884 184 KRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLEV 237 (240)
Q Consensus 184 k~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~~~~ 237 (240)
|.+|+|.+|+.+||++|||++|+++++++.+++ ...+.+.+ +|.+++.+.++.
T Consensus 86 K~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~~~~~l~-~g~~~~~~~~~~ 140 (270)
T 1n83_A 86 KRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYF-DGKYASPDVFKS 140 (270)
T ss_dssp HHSTTTTTSCHHHHHHHHHHHHHHHHHHHGGGGEETTTTEEEE-TTEEECGGGGGG
T ss_pred HcCCChhhcCHHHHHHHHHHhHHHHHHHHHHHHhcCCCCeEEe-CCccccHHHHHh
Confidence 999999999999999999999999999999998 45566666 788887765543
No 29
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.66 E-value=1.3e-15 Score=117.27 Aligned_cols=114 Identities=25% Similarity=0.342 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHhhhccCCCCHHHhhhhcCCCCCCCCCCCCCccccCchhhhhhhhHHHHHHHHHHHHhHHHHHHHhhhcC
Q psy7884 106 LTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKR 185 (240)
Q Consensus 106 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iefak~ 185 (240)
+...+|..+..+|.+.+.++.+.+..+...+.. . +......|.++.+++...+..+|+|||+
T Consensus 13 e~~~li~~l~~a~~~~~~~~~~~~~~~~~~~~~--------~----------~~~~~~~~~~l~~~~~~~l~~~VewaK~ 74 (248)
T 2nxx_E 13 EQEELIHRLVYFQNEYEHPSEEDVKRIINQPMD--------G----------EDQCDVRFRHITEITILTVQLIVEFAKR 74 (248)
T ss_dssp THHHHHHHHHHHHHHTSSCCHHHHHTTCC---C--------C----------SCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCCc--------c----------ccchhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 357889999999999888888877766543220 0 0112345999999999999999999999
Q ss_pred CcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHHHhh
Q psy7884 186 VPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLEV 237 (240)
Q Consensus 186 ~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~~~~ 237 (240)
+|+|.+|+.+||++|||++|+++++++.+++ ...+.+++++|..++++.++.
T Consensus 75 lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~~~~~~~~~~~~~g~~~~~~~~~~ 128 (248)
T 2nxx_E 75 LPGFDKLLREDQIALLKACSSEVMMFRMARRYDVQTDSILFVNNQPYSRDSYNL 128 (248)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETTTTEEECTTSCEECHHHHHH
T ss_pred CCchhhCCHHHHHHHHHHhHHHHHHHHHHHHhcCCCCeEEecCCceecHHHHHh
Confidence 9999999999999999999999999999998 677899999999999876543
No 30
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=99.64 E-value=1.4e-15 Score=118.23 Aligned_cols=117 Identities=24% Similarity=0.288 Sum_probs=92.6
Q ss_pred hhhHHHHHHHHHhhhccCCCCHHHhhhhcCCCCCCCCCCCCCccccCchhhhhhhhHHHHHHHHHHHHhHHHHHHHhhhc
Q psy7884 105 LLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAK 184 (240)
Q Consensus 105 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iefak 184 (240)
.+...+|..+..+|.+...++.+.+..+..... +.+. .. .....|.++.+++...+..+|+|||
T Consensus 26 ~eq~~li~~lv~a~~~~~~~~~~~~~~~~~~~~--~~~~----~~----------~~~~~~~~l~~~~~~~l~~~VewaK 89 (266)
T 2r40_D 26 ANQKSLIARLVWYQEGYEQPSEEDLKRVTQTWQ--SDED----DE----------DSDMPFRQITEMTILTVQLIVEFAK 89 (266)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCHHHHHHHHCC--------------------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHhhhccccC--CCCc----cc----------hhhccHHHHHHHHHHHHHHHHHHHh
Confidence 345778999999999888888887776652100 0000 00 0113489999999999999999999
Q ss_pred CCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHHHhh
Q psy7884 185 RVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLEV 237 (240)
Q Consensus 185 ~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~~~~ 237 (240)
.+|+|.+|+.+||++|||++|+++++++.+++ ...++++|++|..++++.+..
T Consensus 90 ~lp~F~~L~~~DQi~LLk~~~~el~~L~~a~~~~~~~~~l~~~~g~~~~~~~~~~ 144 (266)
T 2r40_D 90 GLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAATDSVLFANNQAYTRDNYRK 144 (266)
T ss_dssp HSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETTTTEEECTTSCEECHHHHHH
T ss_pred cCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceecHHHHhh
Confidence 99999999999999999999999999999998 567899999999999886643
No 31
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=99.64 E-value=8.8e-16 Score=120.43 Aligned_cols=119 Identities=24% Similarity=0.327 Sum_probs=84.1
Q ss_pred hhhhHHHHHHHHHhhhccCCCCHHHhhhhcCCCCCCCCCCCCCccccCchhhhhhhhHHHHHHHHHHHHhHHHHHHHhhh
Q psy7884 104 QLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFA 183 (240)
Q Consensus 104 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iefa 183 (240)
+.+...+|..+..+|......+.+....+...+...+ ......+...|.++.+++...+..+|+||
T Consensus 43 t~e~~~li~~lv~a~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~e~~~~~l~~~Vewa 108 (283)
T 3ipq_A 43 SPEQLGMIEKLVAAQQQCNRRSFSDRLRVTPWPMAPD--------------PHSREARQQRFAHFTELAIVSVQEIVDFA 108 (283)
T ss_dssp CHHHHHHHHHHHHHHC-------------CCCC----------------------CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCChhHHHhcCCCCCCCC--------------cccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788999999998766554443333322211100 00112345679999999999999999999
Q ss_pred cCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHHHh
Q psy7884 184 KRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLE 236 (240)
Q Consensus 184 k~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~~~ 236 (240)
|.+|+|.+|+.+||++|||++|+++++|+.|++ ...+.+.|++|..++++.+.
T Consensus 109 K~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~~~~~g~~~~~~~~~ 163 (283)
T 3ipq_A 109 KQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFA 163 (283)
T ss_dssp HHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEEEETTTEEECHHHHH
T ss_pred hcCcChhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCceecHHHHH
Confidence 999999999999999999999999999999987 56788999999999887664
No 32
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=99.63 E-value=1.2e-15 Score=118.74 Aligned_cols=126 Identities=29% Similarity=0.374 Sum_probs=91.7
Q ss_pred hhhHHHHHHHHHhhhccCCCCHHHhhhhcCCCCCCCCCCCCCccccCchhhhhhhhHHHHHHHHHHHHhHHHHHHHhhhc
Q psy7884 105 LLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAK 184 (240)
Q Consensus 105 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iefak 184 (240)
.+..++|..+.++|..++.+...-.......+..+...+..+ .......+...|.++.+.+...+..+|+|||
T Consensus 19 ~~~~~~i~~~~~ah~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~VewaK 91 (267)
T 3ilz_A 19 PEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVS-------MPDGDKVDLEAFSEFTKIITPAITRVVDFAK 91 (267)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCSCSTTTSEECCTTSSCCCCBC-------CTTSCCBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccCcCcchHHHHHHHHhhhhhhhhccCCC-------CCCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446789999999999877653322111100011111111000 0000113446799999999999999999999
Q ss_pred CCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHHHhh
Q psy7884 185 RVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLEV 237 (240)
Q Consensus 185 ~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~~~~ 237 (240)
++|+|.+|+.+||++|||++|+++++|+.|++ ...+.++|++|..++++.+..
T Consensus 92 ~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~l~~~~g~~~~~~~~~~ 146 (267)
T 3ilz_A 92 KLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKN 146 (267)
T ss_dssp TSHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTCBTTTTBEEETTTEEECHHHHHH
T ss_pred cCcchhhCCHhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEecCCeeecHHHHhc
Confidence 99999999999999999999999999999988 567899999999999887754
No 33
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=99.62 E-value=1.7e-15 Score=117.82 Aligned_cols=129 Identities=20% Similarity=0.326 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHhhhccCCCCHHHhhhhcCCCCC-CCCCCCCCcc-----------ccCchhhhhhhhHHHHHHHHHHHHh
Q psy7884 106 LTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVS-LPPSEVSSPE-----------VASSTAECHESQRLWLWQQFAAHVT 173 (240)
Q Consensus 106 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (240)
....++..+.++|.+++.++..+.+.+...... .+.....+.. ............+...|.++...++
T Consensus 7 ~~~~l~~~~~~a~~~~~~~t~~~a~~~~~~~~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (273)
T 3vi8_A 7 DLKSLAKRIYEAYLKNFNMNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANGIQNKEAEVRIFHCCQCTSV 86 (273)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHC-------CEEECSHHHHHHHHHHHSGGGGSCC--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcccccCCCcCCCCCceeechHHHHhhhhhhhhccCCCCCCCchhHHHHHHHHHHHHH
Confidence 467889999999999999999887765432110 0000000000 0001111223456778999999999
Q ss_pred HHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcccCCCceEecCC-eeecHHH
Q psy7884 174 PSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG-MYVTRQQ 234 (240)
Q Consensus 174 ~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~~~~~~l~~~~G-~~i~~~~ 234 (240)
..|+.+|+|||.+|+|.+|+.+||++|||++|+|+++++.+++...++..+..| ..+..+.
T Consensus 87 ~~v~~iVewAK~iPgF~~L~~~DQi~LLk~~w~ElllL~~a~~~~~~~~~~~~~~~~~~~~~ 148 (273)
T 3vi8_A 87 ETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITREF 148 (273)
T ss_dssp HHHHHHHHHGGGSTTTTTSCHHHHHHHHHHHHHHHHHHHHGGGEETTEEEETTTTEEEEHHH
T ss_pred HHHHHHHHHHccCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCCccchHH
Confidence 999999999999999999999999999999999999999999855555555544 3344433
No 34
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=99.62 E-value=1.6e-15 Score=117.11 Aligned_cols=74 Identities=30% Similarity=0.477 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHHHh
Q psy7884 163 WLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLE 236 (240)
Q Consensus 163 ~~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~~~ 236 (240)
..|.++.++++..|+.+|+|||.+|+|.+|+.+||++|||++|+|+++++.+++ ...+.++|.+|..+++.+..
T Consensus 52 ~~~~~~~~l~~~~i~~iV~wAK~iP~F~~L~~~DQi~LLk~~w~ElllL~~a~~~~~~~~~l~~~~~~~~~~~~~~ 127 (257)
T 3v3e_B 52 GDVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCA 127 (257)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHSBGGGTEEECTTSBEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeEeCCCccccHHHHH
Confidence 359999999999999999999999999999999999999999999999999998 56788999999999887643
No 35
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=99.60 E-value=1.1e-14 Score=111.31 Aligned_cols=75 Identities=36% Similarity=0.675 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHHHh
Q psy7884 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLE 236 (240)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~~~ 236 (240)
...|.++.+++...+..+|+|||++|+|.+|+.+||++|||++|+++++++.+++ ...++++|++|..++++.+.
T Consensus 43 ~~~~~~~~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~~l~~~~g~~~~~~~~~ 119 (236)
T 1fcy_A 43 LGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMH 119 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEEECTTCBEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhccCCCeEEeCCCceecHHHHH
Confidence 4569999999999999999999999999999999999999999999999999998 56789999999999887664
No 36
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=99.59 E-value=4.9e-15 Score=114.56 Aligned_cols=121 Identities=24% Similarity=0.305 Sum_probs=92.1
Q ss_pred hhhHHHHHHHHHhhhccCCCCHHHhhhhcCCCCCCCCCCCCCccccCchhhhhhhhHHHHHHHHHHHHhHHHHHHHhhhc
Q psy7884 105 LLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAK 184 (240)
Q Consensus 105 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iefak 184 (240)
.+...+|..+..+|..++.++.+.+..+.. + ++..... ........+...|.++.+++...+..+|+|||
T Consensus 8 ~e~~~li~~lv~ah~~~~~~~~~~~~~~~~-~--~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~VewaK 77 (254)
T 3b0t_A 8 EEQQRIIAILLDAHHKTYDPTYSDFCQFRP-P--VRVNDGG-------GSVTLELSQLSMLPHLADLVSYSIQKVIGFAK 77 (254)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCTTGGGSCC-C--CCCCCTT-------CCHHHHHHHCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcCHHHHhhccC-C--CccccCC-------CccccccchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345789999999999999888776665532 1 1111000 00112233445699999999999999999999
Q ss_pred CCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecC-CeeecHHHH
Q psy7884 185 RVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSD-GMYVTRQQL 235 (240)
Q Consensus 185 ~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~-G~~i~~~~~ 235 (240)
++|+|.+|+.+||++|||++|+++++++.+++ ...+.+++++ |..+.++..
T Consensus 78 ~ip~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 131 (254)
T 3b0t_A 78 MIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDV 131 (254)
T ss_dssp HSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGTEETTTTEEECSSGGGEECHHHH
T ss_pred CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHhccCCCeEEecCCCeeeeHHHH
Confidence 99999999999999999999999999999998 5677888887 666666544
No 37
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=99.59 E-value=1.3e-14 Score=112.71 Aligned_cols=115 Identities=26% Similarity=0.422 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHhhhccCCCCHHHhhhhcCCCCCCCCCCCCCccccCchhhhhhhhHHHHHHHHHHHHhHHHHHHHhhhcC
Q psy7884 106 LTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKR 185 (240)
Q Consensus 106 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iefak~ 185 (240)
+...++..+..+|..... ....+..... . ..+.. ....+...|.++.+.+...+..+|+|||.
T Consensus 28 ~~~~li~~l~~a~~~~~~-~~~~~~~~~~-----~-~~~~~----------~~~~~~~~~~~~~e~~~~~l~~~VewaK~ 90 (266)
T 3kmr_A 28 EVGELIEKVRKAHQETFP-ALCQLGKYTT-----N-NSSEQ----------RVSLDIDLWDKFSELSTKCIIKTVEFAKQ 90 (266)
T ss_dssp HHHHHHHHHHHHHHTTCC-CGGGSCCBCC-----C-TTCSS----------CCSCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhCC-cHHHHhhccC-----C-CCccc----------cccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456788999999988663 2222211110 0 00000 00123467999999999999999999999
Q ss_pred CcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHHHhh
Q psy7884 186 VPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLEV 237 (240)
Q Consensus 186 ~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~~~~ 237 (240)
+|+|.+|+.+||++|||++|+++++|+.+++ ...++++|+||..++++.+..
T Consensus 91 lP~F~~L~~~DQi~LLk~~~~el~lL~~a~~s~~~~~~l~~~~g~~~~~~~~~~ 144 (266)
T 3kmr_A 91 LPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN 144 (266)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEEECTTSBEEEHHHHHH
T ss_pred CcChhhCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEecCCcccchHHHhh
Confidence 9999999999999999999999999999998 567899999999998877653
No 38
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=99.59 E-value=1.2e-14 Score=111.92 Aligned_cols=119 Identities=18% Similarity=0.116 Sum_probs=86.3
Q ss_pred hhhHHHHHHHHHhhhccCCCCHHHhhhhcCCCCCCCCCCCCCccccCchhhhhhhhHHHHHHHHHHHHhHHHHHHHhhhc
Q psy7884 105 LLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAK 184 (240)
Q Consensus 105 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iefak 184 (240)
.+..++|..+..+|.+++.++...+..............+..+ .......|.++.+++...+..+|+|||
T Consensus 6 ~e~~~li~~l~~ah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~e~~~~~l~~~VewaK 75 (246)
T 1xvp_B 6 KEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPT----------LAPVLPLVTHFADINTFMVLQVIKFTK 75 (246)
T ss_dssp HHHHHHHHHHHHHHHTTSSSGGGGGGGGCCCGGGTCCSSCCCT----------TSCSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHhcCCchhcccccCCCCC----------cchHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999998888777655321111100000000 011345699999999999999999999
Q ss_pred CCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHH
Q psy7884 185 RVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQ 234 (240)
Q Consensus 185 ~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~ 234 (240)
++|+|.+|+.+||++|||++|+++++++.+++ ...+. .+.+|..++++.
T Consensus 76 ~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~~-~~~~~~~~~~~~ 126 (246)
T 1xvp_B 76 DLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQN-FLCGPLRYTIED 126 (246)
T ss_dssp TCHHHHHSCHHHHHHHHHHHHHHHHHHHHGGGEETTTTE-EECSSCEECHHH
T ss_pred cCcchhhCCHHHHHHHHHhhHHHHHHHHHHHHhccccCe-EeeCCeeecHHH
Confidence 99999999999999999999999999999987 33333 345555566653
No 39
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=99.58 E-value=1.1e-14 Score=114.64 Aligned_cols=121 Identities=24% Similarity=0.308 Sum_probs=90.0
Q ss_pred hhhHHHHHHHHHhhhccCCCCHHHhhhhcCCCCCCCCCCCCCccccCchhhhhhhhHHHHHHHHHHHHhHHHHHHHhhhc
Q psy7884 105 LLTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAK 184 (240)
Q Consensus 105 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iefak 184 (240)
.+...+|..+..+|.+++.++.+.+..+.. + ++......+ ......+...|.++.+.+...+..+|+|||
T Consensus 11 ~eq~~li~~lv~ah~~t~~~~~~~~~~~~~-~--~~~~~~~~p-------~~~~~~~~~~~~~l~~~~~~~l~~~VewAK 80 (292)
T 2o4j_A 11 EEQQHIIAILLDAHHKTYDPTYADFRDFRP-P--VRMDGSTGS-------VTLDLSPLSMLPHLADLVSYSIQKVIGFAK 80 (292)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCGGGGGSCC-C--CCC-------------------CCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHhhcC-C--CCCCcccCc-------ccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345779999999999999887766665432 1 111100000 001112234599999999999999999999
Q ss_pred CCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEec-CCeeecHHHH
Q psy7884 185 RVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFS-DGMYVTRQQL 235 (240)
Q Consensus 185 ~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~-~G~~i~~~~~ 235 (240)
.+|+|.+|+.+||++|||++|+++++|+.+++ ...+.++++ +|..+.++.+
T Consensus 81 ~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~ 134 (292)
T 2o4j_A 81 MIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSWDCGSQDYKYDVTDV 134 (292)
T ss_dssp HSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGTEETTTTEEECSSGGGEECHHHH
T ss_pred cCcchhhccHHHHHHHHHHhHHHHHHHHHHHHhcCCCCeEEecCCCeEEcHHHH
Confidence 99999999999999999999999999999988 567788888 4877777654
No 40
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=99.58 E-value=1.1e-14 Score=108.56 Aligned_cols=75 Identities=41% Similarity=0.707 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHHHhh
Q psy7884 163 WLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLEV 237 (240)
Q Consensus 163 ~~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~~~~ 237 (240)
..|..+.+.+...+..+|+|||++|+|.+|+.+||++|||++|+++++++.+++ .+.+.+.|+||.+++++.++.
T Consensus 20 ~~~~~~~~~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~e~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~~ 96 (199)
T 3cqv_A 20 EIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHS 96 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSGGGGGSCHHHHHHHHHHHHHHHHHHHTGGGEETTTTEEECTTSCEEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHhCCCCCeEEecCCCeecHHHHHh
Confidence 459999999999999999999999999999999999999999999999999887 677889999999999887654
No 41
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=99.57 E-value=9.7e-15 Score=111.96 Aligned_cols=75 Identities=31% Similarity=0.461 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHHH
Q psy7884 161 RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQL 235 (240)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~~ 235 (240)
+...|.++.+++...+..+|+|||++|+|.+|+.+||++|||++|+++++++.+++ ...+.+++++|..++++++
T Consensus 45 ~~~~~~~~~~~~~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~rs~~~~~~l~~~~g~~~~~~~~ 121 (244)
T 1pdu_A 45 EADKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRARIDDTKLIFCNGTVLHRTQC 121 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHCCSSCSEEECTTSBEEEHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEeeCCeeecHHHH
Confidence 34569999999999999999999999999999999999999999999999999988 5678899999999987654
No 42
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=99.54 E-value=8e-14 Score=108.28 Aligned_cols=131 Identities=19% Similarity=0.275 Sum_probs=93.8
Q ss_pred hHHHHHHHHHhhhccCCCCHHHhhhhcCCCCCC------CCCC-----CCCc--cccCchhhhhhhhHHHHHHHHHHHHh
Q psy7884 107 TYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSL------PPSE-----VSSP--EVASSTAECHESQRLWLWQQFAAHVT 173 (240)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (240)
...++..+.++|.+++.++..+.+.+....... +... .... .................|..+....+
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 83 (269)
T 3u9q_A 4 LRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSV 83 (269)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHTTCSSSCCCEEECSHHHHHHHCSCCC------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHhhccccCCCCccHHHHHHHHhhhhhhhhccCCCcCCccchhhHHHHHHHHHHHH
Confidence 467889999999999999999888776432211 1100 0000 00000111123345678888888888
Q ss_pred HHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcccCCCceEecCCee-ecHHHHhh
Q psy7884 174 PSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMY-VTRQQLEV 237 (240)
Q Consensus 174 ~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~~~~~~l~~~~G~~-i~~~~~~~ 237 (240)
..+..+|+|||.+|+|.+|+.+||++|||++|+++++++.+++...+++.+++|.. ++++.++.
T Consensus 84 ~~v~~~VewAK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~~~~~~~g~~~~~~~~~~~ 148 (269)
T 3u9q_A 84 EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTREFLKS 148 (269)
T ss_dssp HHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTEEEETTTTEEEEHHHHHH
T ss_pred HHHHHHHHHHcCCCChhhcCHHHHHHHHHHhhHHHHHHHHHHhcCCCCeEEeCCCccccHHHHHH
Confidence 88999999999999999999999999999999999999999886668889988865 67765543
No 43
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=99.52 E-value=1e-14 Score=113.64 Aligned_cols=72 Identities=19% Similarity=0.356 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHH
Q psy7884 163 WLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQ 234 (240)
Q Consensus 163 ~~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~ 234 (240)
..|..+.+++...+..+|+|||.+|+|.+|+.+||++|||++|+++++|+.+++ ...+.++|++|..++++.
T Consensus 59 ~~~~~l~~~a~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~iL~~a~rs~~~~~~l~~~~g~~~~~~~ 132 (271)
T 1l2j_A 59 SMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDE 132 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHTTHHHHHHHHHHHHTSSSTTEECSSSSCCEETGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCeeeecCCccccchh
Confidence 468999999999999999999999999999999999999999999999999987 455889999999887754
No 44
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=99.51 E-value=5.2e-14 Score=108.02 Aligned_cols=76 Identities=25% Similarity=0.416 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc---cCCCceEecCCeeecHHHHh
Q psy7884 161 RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL---TTDSSLTFSDGMYVTRQQLE 236 (240)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~---~~~~~l~~~~G~~i~~~~~~ 236 (240)
+...|.++.+++...+..+|+|||++|+|.+|+.+||++|||++|+++++|+.+++ .+.+.+++++|.+++++.++
T Consensus 34 ~~~~~~~~~~~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~~l~~~~g~~~~~~~~~ 112 (243)
T 3ltx_A 34 KVHLLNSLVKLAERELVHLINWAKNVPGYTDLSLSDQVHLIECCWMELLLLNCAFRSIEHGGKSLAFAPDLVLDRSSWS 112 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSEEEEETTEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEecCCcccchhhhc
Confidence 44679999999999999999999999999999999999999999999999999976 44556999999999887654
No 45
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=99.48 E-value=1.4e-13 Score=105.69 Aligned_cols=74 Identities=22% Similarity=0.356 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHHHh
Q psy7884 163 WLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLE 236 (240)
Q Consensus 163 ~~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~~~ 236 (240)
..|.++.+++...+..+|+|||++|+|.+|+.+||++|||++|+++++++.+++ ...+++.+++|..++++..+
T Consensus 48 ~~~~~~~~~~~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~~~~~~~~~ 123 (244)
T 2e2r_A 48 KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSK 123 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCEEEETTEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHhcccCCeEEecCCEeecHHHhh
Confidence 469999999999999999999999999999999999999999999999999987 55678999999999887554
No 46
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=99.48 E-value=7.4e-14 Score=107.05 Aligned_cols=74 Identities=19% Similarity=0.321 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHHH
Q psy7884 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQL 235 (240)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~~ 235 (240)
...|.++.+++...+..+|+|||++|+|.+|+.+||++|||++|+++++++.+++ ...+.+++++|..++++..
T Consensus 32 ~~~~~~~~~~a~~~l~~~vewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~l~~~~g~~~~~~~~ 107 (240)
T 3oll_A 32 ASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEG 107 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEETBEEEEGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCeeEecCCcccchhhH
Confidence 3569999999999999999999999999999999999999999999999999987 4568899999999887643
No 47
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=99.48 E-value=1.2e-13 Score=106.30 Aligned_cols=73 Identities=18% Similarity=0.346 Sum_probs=67.3
Q ss_pred HHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHHHh
Q psy7884 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLE 236 (240)
Q Consensus 164 ~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~~~ 236 (240)
.|.++.+++...+..+|+|||.+|+|.+|+.+||++|||++|+++++++.+++ ...+.+.+++|.+++++...
T Consensus 49 ~~~~l~e~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~lL~~a~~s~~~~~~l~~~~g~~~~~~~~~ 123 (248)
T 3k6p_A 49 AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLDEEGAR 123 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCEEEETTEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEeCCCcccChhhhh
Confidence 48999999999999999999999999999999999999999999999999987 44589999999999987653
No 48
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=99.47 E-value=2.5e-13 Score=107.20 Aligned_cols=76 Identities=29% Similarity=0.421 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecC-CeeecHHHH
Q psy7884 160 QRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSD-GMYVTRQQL 235 (240)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~-G~~i~~~~~ 235 (240)
.+...|.++.+++...+..+|+|||.+|+|.+|+.+||++|||++|+++++|+.++. ...+.+.+++ |..+.++.+
T Consensus 99 ~~~~~~~~l~e~~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~w~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~ 177 (302)
T 2hc4_A 99 SRLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIALLKSSAIEIIMLRSNQSFSLEDMSWSCGGPDFKYCINDV 177 (302)
T ss_dssp -CCTTHHHHHHHHHHHHHHHHHHHTTSTTTTTSCHHHHHHHHHHHHHHHHHHHGGGTEETTTTEEECSSSTTEECHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEecCCCeeecHHHH
Confidence 345779999999999999999999999999999999999999999999999999977 5566777775 344555544
No 49
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=99.46 E-value=2e-13 Score=105.70 Aligned_cols=75 Identities=24% Similarity=0.347 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc----cCCCceEecCCeeecHHHHh
Q psy7884 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL----TTDSSLTFSDGMYVTRQQLE 236 (240)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~----~~~~~l~~~~G~~i~~~~~~ 236 (240)
...|.++.+++...+..+|+|||++|+|.+|+.+||++|||++|+++++++.+++ ...+.+.+++|..++++.++
T Consensus 39 ~~~~~~l~e~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~l~~~~g~~~~~~~~~ 117 (260)
T 3vhv_A 39 ENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMH 117 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHhcCCHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCeEEecCCccccHHHhh
Confidence 3569999999999999999999999999999999999999999999999999987 24468999999999987664
No 50
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=99.45 E-value=2.7e-13 Score=106.45 Aligned_cols=75 Identities=24% Similarity=0.347 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc----cCCCceEecCCeeecHHHHh
Q psy7884 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL----TTDSSLTFSDGMYVTRQQLE 236 (240)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~----~~~~~l~~~~G~~i~~~~~~ 236 (240)
...|.++.+++...+..+|+|||.+|+|.+|+.+||++|||++|+++++|+.+++ ...+.+.+++|..++++.++
T Consensus 73 ~~~~~~l~e~a~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~rS~~~~~~~~l~~~~g~~~~~~~~~ 151 (294)
T 3vhu_A 73 ENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMH 151 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhCCHHHHHHHHHHhHHHHHHHHHHHHhhhcCCCCeEEeCCCccccHHHhh
Confidence 3569999999999999999999999999999999999999999999999999987 24568999999999887654
No 51
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=99.45 E-value=1.1e-13 Score=106.22 Aligned_cols=73 Identities=16% Similarity=0.232 Sum_probs=66.1
Q ss_pred HHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc-c---CCCceEecCCeeecHHHHh
Q psy7884 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL-T---TDSSLTFSDGMYVTRQQLE 236 (240)
Q Consensus 164 ~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~-~---~~~~l~~~~G~~i~~~~~~ 236 (240)
.|.++.+++...+..+|+|||++|+|.+|+.+||++|||++|+++++++.+++ . ..+.+++++|.+++++.++
T Consensus 47 ~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~ 123 (243)
T 2iz2_A 47 LFELMCKVLDQNLFSQVDWARNTVFFKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLG 123 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSCCBCSSSCBCCCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChhHhhCChHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceeecCCcccChhhHh
Confidence 38899999999999999999999999999999999999999999999999987 2 3688899999988776543
No 52
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=99.44 E-value=1.8e-13 Score=105.31 Aligned_cols=71 Identities=24% Similarity=0.435 Sum_probs=66.0
Q ss_pred HHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHH
Q psy7884 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQ 234 (240)
Q Consensus 164 ~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~ 234 (240)
.|..+.+.+...+..+|+|||++|+|.+|+.+||++|||++|+++++++.+++ ...+.++|++|..++++.
T Consensus 36 ~~~~l~~~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~l~~~~g~~~~~~~ 108 (248)
T 1xpc_A 36 MMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQ 108 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEETTEEEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHhHHHHHHHHHHHhccccCceeecCCceeCccc
Confidence 48899999999999999999999999999999999999999999999999998 456889999999888764
No 53
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=99.44 E-value=2.3e-13 Score=107.12 Aligned_cols=73 Identities=23% Similarity=0.388 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHHH
Q psy7884 163 WLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQL 235 (240)
Q Consensus 163 ~~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~~ 235 (240)
..|..+.+++...+..+|+|||.+|+|.+|+.+||++|||++|+++++|+.+++ ...+.++|++|..++++..
T Consensus 44 ~~~~~l~e~a~~~L~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~~~~l~~~~g~~~~~~~~ 118 (298)
T 2ocf_A 44 SMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQG 118 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTSTTEEEEETTEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhcCCHHHHHHHHHHhhHHHHHHHHHHHhcccCCceeecCCceechhhh
Confidence 458899999999999999999999999999999999999999999999999998 4568899999999988653
No 54
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=99.44 E-value=2.5e-13 Score=105.63 Aligned_cols=72 Identities=19% Similarity=0.356 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHH
Q psy7884 163 WLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQ 234 (240)
Q Consensus 163 ~~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~ 234 (240)
..|.++.+++...+..+|+|||++|+|.+|+.+||++|||++|+++++|+.+++ ...+.++|++|..++++.
T Consensus 31 ~~~~~l~e~a~~~l~~~VewAK~lp~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~~~~l~~~~g~~~~~~~ 104 (268)
T 1yye_A 31 SMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDE 104 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEETTEEEEGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEecCCcccChhh
Confidence 458999999999999999999999999999999999999999999999999987 455889999999888764
No 55
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=99.43 E-value=2.2e-13 Score=105.77 Aligned_cols=74 Identities=20% Similarity=0.285 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cC----CCc--------------e
Q psy7884 163 WLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TT----DSS--------------L 222 (240)
Q Consensus 163 ~~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~----~~~--------------l 222 (240)
..|.++.+++...+..+|+|||.+|+|.+|+.+||++|||++|+++++|+.+++ .. .++ +
T Consensus 42 ~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~w~el~lL~~a~~s~~~~~~~~~~~~~~~~~~~~~~~~l 121 (264)
T 1g2n_A 42 APVSSLCQIGNKQIAALVVWARDIPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLM 121 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHGGGSCCC----------CCCCCCEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCChhcCCHHHHHHHHHHhhHHHHHHHHHHHccccccccccccccccccccccccce
Confidence 458999999999999999999999999999999999999999999999999987 22 566 9
Q ss_pred EecCCeeecHHHHh
Q psy7884 223 TFSDGMYVTRQQLE 236 (240)
Q Consensus 223 ~~~~G~~i~~~~~~ 236 (240)
+|++|.+++++.++
T Consensus 122 ~~~~g~~~~~~~~~ 135 (264)
T 1g2n_A 122 CLMPGMTLHRNSAL 135 (264)
T ss_dssp EEETTEEEEHHHHH
T ss_pred eecCCcccCchhhh
Confidence 99999999887654
No 56
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=99.43 E-value=2.4e-13 Score=105.03 Aligned_cols=73 Identities=21% Similarity=0.218 Sum_probs=66.7
Q ss_pred HHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc---c-CCCceEecCCeeecHHHHh
Q psy7884 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL---T-TDSSLTFSDGMYVTRQQLE 236 (240)
Q Consensus 164 ~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~---~-~~~~l~~~~G~~i~~~~~~ 236 (240)
.|..+.+++...+..+|+|||++|+|.+|+.+||++|||++|+++++|..+++ . ..+.+.+++|.+++++.+.
T Consensus 57 ~~~~l~~~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~lL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~ 133 (257)
T 3plz_A 57 TFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIA 133 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCBTTEEECTTSCEEEHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCcChhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCccChHHHh
Confidence 48899999999999999999999999999999999999999999999999876 2 3689999999999887654
No 57
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=99.42 E-value=4.4e-13 Score=103.75 Aligned_cols=75 Identities=21% Similarity=0.352 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc---cC-CCceEecCCeeecHHHHh
Q psy7884 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL---TT-DSSLTFSDGMYVTRQQLE 236 (240)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~---~~-~~~l~~~~G~~i~~~~~~ 236 (240)
...+.++.+++..++..+|+|||++|+|.+|+.+||++|||++|+++++++.+++ .+ .+.+.+++|.+++++.++
T Consensus 41 ~~~~~~l~~~a~~~l~~~VewaK~iP~F~~L~~~DQ~~LLk~~~~el~iL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~ 119 (261)
T 3mnp_A 41 WRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMVFALGWRSYRQASGNLLCFAPDLIINEQRMT 119 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCEEEecCCcccchhhhh
Confidence 3468899999999999999999999999999999999999999999999999987 23 346899999999887654
No 58
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=99.42 E-value=4.7e-13 Score=104.15 Aligned_cols=74 Identities=22% Similarity=0.347 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc---c-CCCceEecCCeeecHHHHh
Q psy7884 163 WLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL---T-TDSSLTFSDGMYVTRQQLE 236 (240)
Q Consensus 163 ~~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~---~-~~~~l~~~~G~~i~~~~~~ 236 (240)
..|.++.+.+...+..+|+|||++|+|.+|+.+||++|||++|+++++++.+++ . +.+.+++++|.+++++.++
T Consensus 49 ~~~~~l~e~a~~~l~~~VewAK~ip~F~~L~~~DQv~LLk~~w~el~iL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~ 126 (269)
T 1t7r_A 49 ALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMH 126 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccHhhCCHHHHHHHHHHhHHHHHHHHHHHHhcccCCCCeEEeCCCceecHHhhh
Confidence 458999999999999999999999999999999999999999999999999976 2 3347889999999887654
No 59
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.42 E-value=1.9e-13 Score=104.46 Aligned_cols=70 Identities=24% Similarity=0.425 Sum_probs=64.4
Q ss_pred HHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHH
Q psy7884 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQ 234 (240)
Q Consensus 165 ~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~ 234 (240)
+.++.+++...+..+|+|||++|+|.+|+.+||++|||++|+++++++.+++ ...+++++++|.+++++.
T Consensus 39 ~~~~~~~~~~~l~~~vewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~g~~~~~~~ 110 (235)
T 2nxx_A 39 VNNICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKST 110 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSTTSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSSSEECSSSCEECSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHhHHHHHHHHHHHhcccCCCceEecCCcccccch
Confidence 7788889999999999999999999999999999999999999999999987 456889999999987764
No 60
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=99.42 E-value=3.1e-13 Score=103.90 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=65.5
Q ss_pred HHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc----cCCCceEecCCeeecHHHH
Q psy7884 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL----TTDSSLTFSDGMYVTRQQL 235 (240)
Q Consensus 165 ~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~----~~~~~l~~~~G~~i~~~~~ 235 (240)
+.++.+++...+..+|+|||++|+|.+|+.+||++|||++|+++++++.+++ .+.+.+++++|.+++++.+
T Consensus 47 ~~~l~~~a~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~ 121 (246)
T 1ymt_A 47 FSLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTV 121 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTEEECTTSCEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhChhHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEecCCCccchhhh
Confidence 7788999999999999999999999999999999999999999999999987 2578999999999987654
No 61
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}
Probab=99.37 E-value=5.9e-13 Score=106.85 Aligned_cols=74 Identities=20% Similarity=0.200 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc---c-CCCceEecCCeeecHHHHh
Q psy7884 163 WLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL---T-TDSSLTFSDGMYVTRQQLE 236 (240)
Q Consensus 163 ~~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~---~-~~~~l~~~~G~~i~~~~~~ 236 (240)
..|.++.+++...|..+|+|||.+|+|.+|+.+||++|||++|+++++|+.+++ . ..+.+++++|..+.++.+.
T Consensus 151 ~~~~~l~e~a~~~L~~~VewAK~iP~F~~L~~~DQi~LLk~~w~ElllL~~a~rs~~~~~~~~ll~~~G~~i~~~~~~ 228 (352)
T 3tx7_B 151 STFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIA 228 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCC----------CHHHHHHHHHHHHHHHHHHHHHHTCCSSCCBCTTCCBCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCCcccHHHHH
Confidence 468899999999999999999999999999999999999999999999999876 2 3588999999999887654
No 62
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=99.36 E-value=3.2e-13 Score=106.95 Aligned_cols=72 Identities=22% Similarity=0.246 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHH
Q psy7884 161 RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQ 233 (240)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~ 233 (240)
+...|.++.+.+...|..+|+|||.+|+|.+|+.+||++|||++|+++++|+.+++ ...+.+++++ ..+.++
T Consensus 118 ~~~~~~~l~e~~~~~L~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~~~~~~~~~~l~~~-~~~~~~ 191 (316)
T 1nrl_A 118 IFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWECGR-LSYCLE 191 (316)
T ss_dssp GGTTHHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEEEETT-EEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhcCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEECC-EeecHH
Confidence 35679999999999999999999999999999999999999999999999999998 4566777654 555443
No 63
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=99.36 E-value=1.2e-12 Score=101.45 Aligned_cols=73 Identities=23% Similarity=0.374 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc---cCCC-ceEecCCeeecHHHH
Q psy7884 163 WLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL---TTDS-SLTFSDGMYVTRQQL 235 (240)
Q Consensus 163 ~~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~---~~~~-~l~~~~G~~i~~~~~ 235 (240)
..|.++.+++...+..+|+|||++|+|.+|+.+||++|||++|+++++++.+++ .+.+ .+.|++|..++++.+
T Consensus 41 ~~~~~l~e~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~~~l~~~~~~~~~~~~~ 117 (261)
T 1sqn_A 41 SLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRM 117 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECGGGC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCccHhhCCHHHHHHHHHhhHHHHHHHHHHHHhhhcCCCCeEEeCCCcccchHhh
Confidence 458899999999999999999999999999999999999999999999999998 2233 588999998887653
No 64
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=99.36 E-value=1.5e-12 Score=99.75 Aligned_cols=72 Identities=29% Similarity=0.499 Sum_probs=64.9
Q ss_pred HHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHHHHh
Q psy7884 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLE 236 (240)
Q Consensus 165 ~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~~~~ 236 (240)
+..+.+++...+..+|+|||++|+|.+|+.+||+.|||++|++++++..+++ ...+++++++|..++++.++
T Consensus 43 ~~~l~~~~~~~l~~~vewak~ip~F~~L~~~DQ~~LLk~~w~e~~il~~a~rs~~~~~~~~~~~g~~~~~~~~~ 116 (240)
T 2p1t_A 43 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAH 116 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTSSSEEECTTSCEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCcccccchhh
Confidence 6778888999999999999999999999999999999999999999999876 45678899999998887554
No 65
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=99.36 E-value=3.2e-12 Score=97.49 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=53.8
Q ss_pred HHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCC
Q psy7884 167 QFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDG 227 (240)
Q Consensus 167 ~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G 227 (240)
.+.++++..++.+|+|||.+|+|.+|+.+||++|||++|+|+++++.+++ ...+.+.+++|
T Consensus 45 ~i~~l~~~~l~~iVefAK~iPgF~~L~~~DQi~LLK~~~~ElliLr~a~~~~~~~~~~~~~~~ 107 (244)
T 3gyt_A 45 DILNVMDITMRRLVKMAKRLGAFNEISEAGKFSLLKGGMIEMLTIRGVTVFNADKGVWQTPVD 107 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEECCTTS
T ss_pred HHHHHHHHHHHHHHHHHccCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEeecCC
Confidence 34567777899999999999999999999999999999999999999998 45667777776
No 66
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=99.33 E-value=1.5e-12 Score=102.03 Aligned_cols=69 Identities=29% Similarity=0.429 Sum_probs=51.4
Q ss_pred HHHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc-c--CCC-------ceEecCCeeecH
Q psy7884 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL-T--TDS-------SLTFSDGMYVTR 232 (240)
Q Consensus 164 ~~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~-~--~~~-------~l~~~~G~~i~~ 232 (240)
.|.++.+++...+..+|+|||++|+|.+|+.+||++|||++|+++++|+.|++ . +.. +++++||+++++
T Consensus 48 ~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~~~~~~dGs~~~~ 126 (279)
T 1hg4_A 48 AVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERR 126 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTTC---------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccccccccCcccccc
Confidence 58899999999999999999999999999999999999999999999999976 2 222 367888875543
No 67
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=99.30 E-value=5.1e-12 Score=96.29 Aligned_cols=88 Identities=20% Similarity=0.238 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHhhhccCCCCHHHhhhhcCCCCCCCCCCCCCccccCchhhhhhhhHHHHHHHHHHHHhHHHHHHHhhhcC
Q psy7884 106 LTYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKR 185 (240)
Q Consensus 106 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iefak~ 185 (240)
+...++..+..+|........+.. .....+ .+ ....|.++.+++...+..+|+|||+
T Consensus 8 e~~~li~~l~~a~~~~~~~~~~~~-~~~~~~--------~~--------------~~~~~~~~~~~~~~~l~~~vewaK~ 64 (232)
T 1osh_A 8 DQQTLLHFIMDSYNKQRMPQEITN-KILKEE--------FS--------------AEENFLILTEMATNHVQVLVEFTKK 64 (232)
T ss_dssp HHHHHHHHHHHHHTSCCCC--------------------------------------CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCChHHHH-HHhhcc--------CC--------------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346789999999998664443221 111100 01 1124999999999999999999999
Q ss_pred CcCcCCCChhHHHHHHHhhhHHHHhhhhhcc
Q psy7884 186 VPGFCDLSQDDQLILIKMGFFELWIGYVSRL 216 (240)
Q Consensus 186 ~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~ 216 (240)
+|+|.+|+.+||++|||++|+++++++.|++
T Consensus 65 lp~F~~L~~~DQ~~LLk~~~~e~~~l~~a~~ 95 (232)
T 1osh_A 65 LPGFQTLDHEDQIALLKGSAVEAMFLRSAEI 95 (232)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999999999999987
No 68
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding protein- transcription complex; HET: XCA; 1.25A {Ancylostoma ceylanicum} PDB: 3up0_A*
Probab=99.30 E-value=5e-12 Score=96.71 Aligned_cols=69 Identities=29% Similarity=0.426 Sum_probs=57.0
Q ss_pred HHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCce---EecCCeeecHHHH
Q psy7884 167 QFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSL---TFSDGMYVTRQQL 235 (240)
Q Consensus 167 ~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l---~~~~G~~i~~~~~ 235 (240)
++.++++..++.+|+|||.+|+|.+|+.+||++|||++|+|+++++.+++ ...+++ .+.+|..++++.+
T Consensus 45 ~l~~l~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~w~Ell~L~~a~r~~~~~~~~~~~~~~~~~~~~~~~~ 118 (243)
T 3up3_A 45 DIMNIMDVTMRRFVKMAKRLPAFNDLSQDGKFALLKGGMIEMLTVRGVRRFDSSSGSWTTPTLGESSEVSINMF 118 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHEETTTTEECCTTSCTTCCEEGGGG
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcccCCeeeecccCCCccccHHHH
Confidence 45578888999999999999999999999999999999999999999987 455554 2456666665543
No 69
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=99.28 E-value=3e-12 Score=97.93 Aligned_cols=69 Identities=23% Similarity=0.361 Sum_probs=63.1
Q ss_pred HHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc--cCCCceEecCCeeecHH
Q psy7884 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQ 233 (240)
Q Consensus 165 ~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~--~~~~~l~~~~G~~i~~~ 233 (240)
+.++.+++...+..+|+|||++|+|.+|+.+||+.|||++|+++++|..+++ ...+.+++++|.+++++
T Consensus 43 ~~~~~~~~~~~l~~~v~wak~~p~F~~L~~~DQ~~LLk~~~~~~~~L~~a~~s~~~~~~~~~~~g~~~~~~ 113 (237)
T 1pzl_A 43 IADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRH 113 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHSHHHHHHHHHHHHHTTSSSEEECTTSCEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeecCCcccCcc
Confidence 6788888889999999999999999999999999999999999999999988 56778899999988654
No 70
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=99.24 E-value=3.3e-12 Score=98.06 Aligned_cols=66 Identities=21% Similarity=0.333 Sum_probs=52.2
Q ss_pred HHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc---cCCCceEecCCeee
Q psy7884 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL---TTDSSLTFSDGMYV 230 (240)
Q Consensus 165 ~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~---~~~~~l~~~~G~~i 230 (240)
|.++.+++...+..+|+|||++|+|.+|+.+||++|||++|+++++++.+++ .+.+.+.+++|...
T Consensus 39 ~~~l~e~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~~~l~~~g~~~ 107 (244)
T 3cjw_A 39 IENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHA 107 (244)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCC---------
T ss_pred HHHHHHHHHHHHHHHHhHHHhCCChhcCCHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc
Confidence 6678889999999999999999999999999999999999999999999987 34556777887553
No 71
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=99.23 E-value=4.4e-12 Score=97.58 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=56.3
Q ss_pred HHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc---cCCCceEecCCee
Q psy7884 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL---TTDSSLTFSDGMY 229 (240)
Q Consensus 165 ~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~---~~~~~l~~~~G~~ 229 (240)
|..+.+++...+..+|+|||.+|+|.+|+.+||++|||++|+++++|+.|++ .+.+.+.+++|.+
T Consensus 36 ~~~~~e~a~~~L~~~VewaK~iP~F~~L~~~DQ~~LLk~~w~el~~L~~a~~s~~~~~~~~l~~~~~~ 103 (249)
T 3p0u_A 36 VHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNH 103 (249)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTCTTTGGGCHHHHHHHHHTTHHHHHHHHHHHTTTSCCCCCCCCC-CC-
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHcccCCcchhhcccccc
Confidence 5577888889999999999999999999999999999999999999999987 3556777777654
No 72
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=99.12 E-value=5.2e-11 Score=92.34 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=50.1
Q ss_pred HHHHHHHHhHHHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHhhhhhcc
Q psy7884 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL 216 (240)
Q Consensus 165 ~~~~~~~~~~~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~l~~a~~ 216 (240)
..++.+++...+..+|+|||.+|+|.+|+.+||++|||++|+|+++|+.|++
T Consensus 49 ~~~l~e~a~~~L~~~V~wAK~iP~F~~L~~~DQv~LLk~~w~ElllL~~A~r 100 (268)
T 3f5c_B 49 PQVVCEAASAGLLKTLRFVKYLPCFQILPLDQQLVLVRSCWAPLLMLELAQD 100 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6788899999999999999999999999999999999999999999999987
No 73
>2ll1_A U1-TRTX-SP1A; toxin; NMR {Theraphosidae}
Probab=59.36 E-value=1.1 Score=20.84 Aligned_cols=8 Identities=63% Similarity=1.547 Sum_probs=7.0
Q ss_pred hcchhhhH
Q psy7884 36 YCRFKKCL 43 (240)
Q Consensus 36 ~CR~~KCl 43 (240)
.|||-||+
T Consensus 24 qcrygkcl 31 (33)
T 2ll1_A 24 QCRYGKCL 31 (33)
T ss_dssp EEETTEEE
T ss_pred EeecceEe
Confidence 69999996
No 74
>1x5v_A PCFK1; inhibitory cystine knot, toxin; HET: HSL; NMR {Psalmopoeus cambridgei}
Probab=54.49 E-value=1.7 Score=20.55 Aligned_cols=22 Identities=32% Similarity=0.942 Sum_probs=13.8
Q ss_pred CccccccCCcccch--hcchhhhH
Q psy7884 22 GKCLVIRLNRNRCQ--YCRFKKCL 43 (240)
Q Consensus 22 ~~C~i~~~~r~~C~--~CR~~KCl 43 (240)
.+|.-....|.-|+ .|||-||+
T Consensus 7 d~c~~~p~~~~cc~glqcryg~cl 30 (34)
T 1x5v_A 7 DNCVYVPAQNPCCRGLQCRYGKCL 30 (34)
T ss_dssp CEECSCGGGCCBCTTEEEETEEEE
T ss_pred CCCCCCCCCCccceeeeeccCcEE
Confidence 34554444554554 59999997
No 75
>2hlg_A Fruit-specific protein; beta antiparallel, plant protein; NMR {Lycopersicon esculentum}
Probab=49.56 E-value=3.1 Score=20.65 Aligned_cols=21 Identities=29% Similarity=0.909 Sum_probs=15.2
Q ss_pred eEeccCCccc-cccCCcccchhcchhh
Q psy7884 16 YRCLRDGKCL-VIRLNRNRCQYCRFKK 41 (240)
Q Consensus 16 ~~C~~~~~C~-i~~~~r~~C~~CR~~K 41 (240)
+.|..+.+|. | -.|++|.++|
T Consensus 4 ~yC~~NsDC~GI-----TlC~wCK~K~ 25 (39)
T 2hlg_A 4 EPCSSNSDCIGI-----TLCQFCKEKT 25 (39)
T ss_dssp CBCSSSGGGSSS-----SSCCEEEEEE
T ss_pred ccccCCCCeeeE-----Eecccceecc
Confidence 3577777784 3 2799998877
No 76
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=45.54 E-value=14 Score=24.22 Aligned_cols=21 Identities=10% Similarity=0.314 Sum_probs=18.2
Q ss_pred hcCCcCcCCCChhHHHHHHHh
Q psy7884 183 AKRVPGFCDLSQDDQLILIKM 203 (240)
Q Consensus 183 ak~~p~F~~L~~~Dq~~Llk~ 203 (240)
+-.|++|..|..+||..+.+.
T Consensus 73 ~~~i~G~~~L~~eDQ~~I~~~ 93 (117)
T 1uw0_A 73 LTELEGWEELEDNEKEQITQH 93 (117)
T ss_dssp TSSSBSTTTSCHHHHHHHHHH
T ss_pred hHHCcChHHCCHHHHHHHHHH
Confidence 456999999999999998774
No 77
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=43.44 E-value=8.9 Score=24.86 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=18.2
Q ss_pred hcCCcCcCCCChhHHHHHHHh
Q psy7884 183 AKRVPGFCDLSQDDQLILIKM 203 (240)
Q Consensus 183 ak~~p~F~~L~~~Dq~~Llk~ 203 (240)
+..|++|..|..+||..+.+.
T Consensus 75 ~~~I~Gf~~L~~eDQe~Ikk~ 95 (111)
T 3odc_A 75 ASQLKGFSLLATEDKEALKKQ 95 (111)
T ss_dssp GGGEETGGGSCHHHHHHHHHH
T ss_pred HHhCCChHHCCHHHHHHHHHH
Confidence 456999999999999998874
No 78
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=41.85 E-value=13 Score=24.25 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=19.3
Q ss_pred hhhcCCcCcCCCChhHHHHHHHh
Q psy7884 181 EFAKRVPGFCDLSQDDQLILIKM 203 (240)
Q Consensus 181 efak~~p~F~~L~~~Dq~~Llk~ 203 (240)
+-+..|++|..|..+||..+.+.
T Consensus 67 ~~~~~I~G~~~L~~eDQ~~I~~~ 89 (114)
T 1v9x_A 67 KSVDDVEGIESLRWEDQQKIRKY 89 (114)
T ss_dssp SCGGGEETTTTSCHHHHHHHHHH
T ss_pred CChHHCCChHHCCHHHHHHHHHH
Confidence 44567999999999999998774
No 79
>2lke_A Integrin alpha-M; myristoylated, DPC micelles, cell adhesion; NMR {Homo sapiens} PDB: 2lkj_A*
Probab=40.64 E-value=7.8 Score=17.83 Aligned_cols=6 Identities=67% Similarity=1.564 Sum_probs=3.0
Q ss_pred chhhhh
Q psy7884 4 GFFRRS 9 (240)
Q Consensus 4 ~FFRRs 9 (240)
+||+|-
T Consensus 3 GFFKR~ 8 (26)
T 2lke_A 3 GFFKRQ 8 (26)
T ss_dssp GGHHHH
T ss_pred Cchhhc
Confidence 455553
No 80
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=39.57 E-value=10 Score=24.84 Aligned_cols=20 Identities=40% Similarity=0.494 Sum_probs=17.6
Q ss_pred cCCcCcCCCChhHHHHHHHh
Q psy7884 184 KRVPGFCDLSQDDQLILIKM 203 (240)
Q Consensus 184 k~~p~F~~L~~~Dq~~Llk~ 203 (240)
..+++|..|..+||..+.+.
T Consensus 89 ~~I~Gfd~L~~eDQekIkk~ 108 (116)
T 3od8_A 89 VEVDGFSELRWDDQQKVKKT 108 (116)
T ss_dssp HHEETGGGSCHHHHHHHHHH
T ss_pred hhCcChHHCCHHHHHHHHHH
Confidence 45899999999999998873
No 81
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=37.49 E-value=16 Score=23.43 Aligned_cols=20 Identities=40% Similarity=0.494 Sum_probs=17.0
Q ss_pred cCCcCcCCCChhHHHHHHHh
Q psy7884 184 KRVPGFCDLSQDDQLILIKM 203 (240)
Q Consensus 184 k~~p~F~~L~~~Dq~~Llk~ 203 (240)
..|++|..|..+||..+.+.
T Consensus 76 ~~i~G~~~L~~eDq~~i~~~ 95 (106)
T 2dmj_A 76 VEVDGFSELRWDDQQKVKKT 95 (106)
T ss_dssp TSEETTTTSCHHHHHHHHHH
T ss_pred hhCCChHHCCHHHHHHHHHH
Confidence 35999999999999988663
No 82
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=36.57 E-value=9.3 Score=19.39 Aligned_cols=11 Identities=36% Similarity=0.682 Sum_probs=9.6
Q ss_pred hhcchhhhHHh
Q psy7884 35 QYCRFKKCLAV 45 (240)
Q Consensus 35 ~~CR~~KCl~v 45 (240)
++|.+++||+.
T Consensus 6 ~a~a~q~CL~~ 16 (38)
T 1ei0_A 6 QAAEIQKCLQA 16 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 58999999986
No 83
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=36.48 E-value=32 Score=22.19 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=25.1
Q ss_pred HHHHHHhhhcCCcCcCCCChhHHHHHHHhh
Q psy7884 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMG 204 (240)
Q Consensus 175 ~l~~~iefak~~p~F~~L~~~Dq~~Llk~~ 204 (240)
++...+++.+.+|.|..|+.++...|+...
T Consensus 5 ~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~ 34 (138)
T 1vp6_A 5 DFVRNWQLVAAVPLFQKLGPAVLVEIVRAL 34 (138)
T ss_dssp HHHHHHHHHTTCGGGGGCCHHHHHHHHHHC
T ss_pred hHHHHHHHHHhChhhhcCCHHHHHHHHHhh
Confidence 445578999999999999999988888753
No 84
>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*
Probab=34.81 E-value=18 Score=28.05 Aligned_cols=21 Identities=38% Similarity=0.669 Sum_probs=17.4
Q ss_pred cCCCChhHHHHHHHhhhHHHH
Q psy7884 189 FCDLSQDDQLILIKMGFFELW 209 (240)
Q Consensus 189 F~~L~~~Dq~~Llk~~~~~~~ 209 (240)
|++|+.+||+.||.....++.
T Consensus 28 F~~Ls~DdqLALLWf~Y~emG 48 (323)
T 3mg1_A 28 FSQLNAEDQLALIWFAYLEMG 48 (323)
T ss_dssp HHTSCHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHHhc
Confidence 889999999999987666553
No 85
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=31.72 E-value=24 Score=22.86 Aligned_cols=27 Identities=19% Similarity=0.501 Sum_probs=22.5
Q ss_pred HHHHhhhcCCcCcCCCChhHHHHHHHh
Q psy7884 177 QRVVEFAKRVPGFCDLSQDDQLILIKM 203 (240)
Q Consensus 177 ~~~iefak~~p~F~~L~~~Dq~~Llk~ 203 (240)
..+++|.+.++.|..|+.++...|+..
T Consensus 12 ~~~~~~l~~~~~f~~l~~~~~~~l~~~ 38 (134)
T 2d93_A 12 EQLLEFMHQLPAFANMTMSVRRELCSV 38 (134)
T ss_dssp HHHHHHHHHSSTTTSSCHHHHHHHTTT
T ss_pred HHHHHHHhCCcchhhCCHHHHHHHHHh
Confidence 347788899999999999988877765
No 86
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.53 E-value=21 Score=23.98 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=18.0
Q ss_pred hcCCcCcCCCChhHHHHHHHh
Q psy7884 183 AKRVPGFCDLSQDDQLILIKM 203 (240)
Q Consensus 183 ak~~p~F~~L~~~Dq~~Llk~ 203 (240)
+..|++|..|..+||..+.+.
T Consensus 83 ~~~I~Gf~~L~~eDQe~I~~~ 103 (134)
T 2cs2_A 83 ASQLKGFSLLATEDKEALKKQ 103 (134)
T ss_dssp GGGEETTTTSCHHHHHHHHTT
T ss_pred hHhCCChHHCCHHHHHHHHHH
Confidence 355999999999999998774
No 87
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=28.93 E-value=12 Score=27.68 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHH---HHhhhcCCcCcCCCChhHHHHHHHh
Q psy7884 163 WLWQQFAAHVTPSVQR---VVEFAKRVPGFCDLSQDDQLILIKM 203 (240)
Q Consensus 163 ~~~~~~~~~~~~~l~~---~iefak~~p~F~~L~~~Dq~~Llk~ 203 (240)
..|.|+..++...... -+.=+..|++|..|..+||..|.+.
T Consensus 176 ~~W~H~~Cf~~~~~~l~~~~~~~~~~l~Gf~~L~~eDQ~~ikk~ 219 (223)
T 4av1_A 176 DRWYHPGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQ 219 (223)
T ss_dssp --------------------------------------------
T ss_pred ceeEChhhhhchhhhcccCCCCChHHCCChHHCCHHHHHHHHHh
Confidence 4588887765432110 1112566999999999999998774
No 88
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=26.23 E-value=15 Score=20.35 Aligned_cols=7 Identities=57% Similarity=1.260 Sum_probs=5.0
Q ss_pred chhhhhh
Q psy7884 4 GFFRRSI 10 (240)
Q Consensus 4 ~FFRRsv 10 (240)
|||+|.-
T Consensus 37 GFFkR~~ 43 (54)
T 2knc_A 37 GFFKRNR 43 (54)
T ss_dssp HHTTTTC
T ss_pred CcccCCC
Confidence 7888754
No 89
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=26.05 E-value=14 Score=20.42 Aligned_cols=7 Identities=57% Similarity=1.483 Sum_probs=5.2
Q ss_pred chhhhhh
Q psy7884 4 GFFRRSI 10 (240)
Q Consensus 4 ~FFRRsv 10 (240)
|||+|.-
T Consensus 34 GFFKR~~ 40 (54)
T 2l8s_A 34 GFFKRPL 40 (54)
T ss_dssp HHTTSCC
T ss_pred CcccCCC
Confidence 7888854
No 90
>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*
Probab=24.77 E-value=1.5e+02 Score=22.97 Aligned_cols=47 Identities=11% Similarity=0.297 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHHHhH--------------HHHHHHhhhcCCcCcCCCChhHHHHHHHhhhHHHHh
Q psy7884 158 ESQRLWLWQQFAAHVTP--------------SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210 (240)
Q Consensus 158 ~~~~~~~~~~~~~~~~~--------------~l~~~iefak~~p~F~~L~~~Dq~~Llk~~~~~~~~ 210 (240)
....+.+|..+.+++.. +...+++ ....|+.++|+++|++.+..+..
T Consensus 103 ~n~KL~fWY~Lae~M~~G~VipvP~~Y~lS~~a~~vl~------~I~~Ldf~QQItvlR~~V~~MG~ 163 (323)
T 3mg1_A 103 PNIKLGFWYRLGELMEQGFVAPIPAGYQLSANANAVLA------TIQGLESGQQITVLRNAVVDMGF 163 (323)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCSCTTCCCCHHHHHHHH------HHHTSCHHHHHHHHHHHHHTCCC
T ss_pred CcchhHHHHHHHHHhcCCcEecCCCCCCcCHHHHHHHH------HHHcCChhhhHHHHHHHHHHcCC
Confidence 45678889998887764 1112222 23478999999999998887744
No 91
>2lg7_A Uncharacterized protein; APSY spectroscopy, structural genomics, joint center for STR genomics, JCSG, calcium-binding protein; NMR {Parabacteroides distasonis} PDB: 2lge_A
Probab=24.73 E-value=12 Score=22.95 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=17.3
Q ss_pred cCCCceEecCCeeecHHHHhhhcC
Q psy7884 217 TTDSSLTFSDGMYVTRQQLEVMYD 240 (240)
Q Consensus 217 ~~~~~l~~~~G~~i~~~~~~~~~~ 240 (240)
.....++|.||..|+.+.|.+.|+
T Consensus 106 iekkslvfrdgkeistddlnlyyn 129 (129)
T 2lg7_A 106 IEKKSLVFRDGKEISTDDLNLYYN 129 (129)
T ss_dssp EEEEEEEECSCCCCSCCCCCCEEC
T ss_pred eeeeeeEeecCccccccccceecC
Confidence 344677888888888877776664
No 92
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=23.87 E-value=70 Score=20.58 Aligned_cols=25 Identities=8% Similarity=-0.055 Sum_probs=21.3
Q ss_pred HHhhhcCCcCcCCCChhHHHHHHHh
Q psy7884 179 VVEFAKRVPGFCDLSQDDQLILIKM 203 (240)
Q Consensus 179 ~iefak~~p~F~~L~~~Dq~~Llk~ 203 (240)
+.++.+.+|.|..|+.++...|+..
T Consensus 21 ~~~~l~~~~~f~~l~~~~~~~l~~~ 45 (139)
T 3ocp_A 21 IKEAILDNDFMKNLELSQIQEIVDC 45 (139)
T ss_dssp HHHHHHHCTTTTTSCHHHHHHHHHH
T ss_pred HHHHHhcCHhhhcCCHHHHHHHHHh
Confidence 6778889999999999988877765
No 93
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=23.61 E-value=21 Score=20.81 Aligned_cols=11 Identities=45% Similarity=1.014 Sum_probs=9.6
Q ss_pred hhcchhhhHHh
Q psy7884 35 QYCRFKKCLAV 45 (240)
Q Consensus 35 ~~CR~~KCl~v 45 (240)
++|++++||+.
T Consensus 10 ~AcaiQ~CL~~ 20 (68)
T 1hp8_A 10 QACEIQKCLQA 20 (68)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 58999999995
No 94
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=21.90 E-value=80 Score=18.59 Aligned_cols=29 Identities=24% Similarity=0.511 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhhhcCCcC
Q psy7884 160 QRLWLWQQFAAHVTPSVQRVVEFAKRVPG 188 (240)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~iefak~~p~ 188 (240)
+..|.-.++.+.+...|..+++|...|..
T Consensus 13 q~DW~nRe~ie~is~~I~~~v~FLN~F~~ 41 (73)
T 3pp5_A 13 QKDWEQREFIEDMSINIQKIVEFLNKFEL 41 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677888899999999999987754
No 95
>1fyg_A Omega conotoxin SO3; beta sheet; NMR {Synthetic} SCOP: g.3.6.1 PDB: 2km9_A
Probab=21.83 E-value=36 Score=15.41 Aligned_cols=20 Identities=40% Similarity=0.773 Sum_probs=11.3
Q ss_pred CCccccccCCcccc-hhcchhhh
Q psy7884 21 DGKCLVIRLNRNRC-QYCRFKKC 42 (240)
Q Consensus 21 ~~~C~i~~~~r~~C-~~CR~~KC 42 (240)
+..|....+ .=| .+|++-||
T Consensus 5 G~~C~~~~~--~CC~~~C~~~~C 25 (26)
T 1fyg_A 5 GKPCSRIAY--NCCTGSCRSGKC 25 (26)
T ss_dssp TSCCBTTBC--CCSSSCCBTTBC
T ss_pred CcccCCccc--ccCCCcccCcEe
Confidence 346655332 245 78877766
No 96
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=21.40 E-value=97 Score=20.11 Aligned_cols=25 Identities=16% Similarity=-0.008 Sum_probs=22.5
Q ss_pred HHhhhcCCcCcCCCChhHHHHHHHh
Q psy7884 179 VVEFAKRVPGFCDLSQDDQLILIKM 203 (240)
Q Consensus 179 ~iefak~~p~F~~L~~~Dq~~Llk~ 203 (240)
+.++.+.+|.|..|+.++...|+..
T Consensus 10 ~~~~l~~~~~f~~l~~~~~~~l~~~ 34 (154)
T 2z69_A 10 HQQLLQSHHLFEPLSPVQLQELLAS 34 (154)
T ss_dssp HHHHHTTSTTTTTSCHHHHHHHHHT
T ss_pred HHHHhhcChhhcCCCHHHHHHHHhh
Confidence 6788999999999999999888876
No 97
>1v4q_A Omega-conotoxin MVIIC; cystine knot motif, triple-stranded antiparallel beta-sheet, calcium channel blocker; NMR {Synthetic}
Probab=21.22 E-value=33 Score=15.79 Aligned_cols=20 Identities=25% Similarity=0.668 Sum_probs=10.7
Q ss_pred CCccccccCCcccc-hhc-chhhh
Q psy7884 21 DGKCLVIRLNRNRC-QYC-RFKKC 42 (240)
Q Consensus 21 ~~~C~i~~~~r~~C-~~C-R~~KC 42 (240)
+..|....+ .=| .+| |+-||
T Consensus 5 g~~C~~~~~--~CC~~~C~~~~~C 26 (27)
T 1v4q_A 5 GAPCRKTMY--DCCKGRCGRRGRC 26 (27)
T ss_dssp TSCCCTTSC--CBTTSCCCTTSCC
T ss_pred CcccCCccc--ccccCccccceee
Confidence 335654332 245 688 56665
No 98
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=20.81 E-value=79 Score=20.82 Aligned_cols=25 Identities=8% Similarity=0.169 Sum_probs=21.3
Q ss_pred HHhhhcCCcCcCCCChhHHHHHHHh
Q psy7884 179 VVEFAKRVPGFCDLSQDDQLILIKM 203 (240)
Q Consensus 179 ~iefak~~p~F~~L~~~Dq~~Llk~ 203 (240)
+.++.+.+|.|..|+.++...|+..
T Consensus 36 ~~~~l~~~~~f~~l~~~~~~~l~~~ 60 (154)
T 3pna_A 36 LAKAIEKNVLFSHLDDNERSDIFDA 60 (154)
T ss_dssp HHHHHHHCGGGTTCCHHHHHHHHHH
T ss_pred HHHHHHhChhhhhCCHHHHHHHHHh
Confidence 5677889999999999988888775
No 99
>1oig_A Dumpy, CG33196-PB; structural protein; NMR {Drosophila melanogaster} SCOP: g.3.18.1
Probab=20.53 E-value=12 Score=17.16 Aligned_cols=20 Identities=30% Similarity=0.687 Sum_probs=12.3
Q ss_pred eccCCccccccCCcccchhcchhhhHH
Q psy7884 18 CLRDGKCLVIRLNRNRCQYCRFKKCLA 44 (240)
Q Consensus 18 C~~~~~C~i~~~~r~~C~~CR~~KCl~ 44 (240)
|-.+..|.- =++|-.+||++
T Consensus 4 C~~~sdCp~-------~~aC~n~kC~d 23 (26)
T 1oig_A 4 CVLNSDCPS-------NQACVNQKCRD 23 (26)
T ss_dssp CCSSTTSST-------TCEECSSSEEC
T ss_pred ccccCcCCc-------CHhhhcCcccC
Confidence 445555543 14888888864
No 100
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=20.27 E-value=90 Score=18.48 Aligned_cols=29 Identities=14% Similarity=0.428 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhhhcCCcC
Q psy7884 160 QRLWLWQQFAAHVTPSVQRVVEFAKRVPG 188 (240)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~iefak~~p~ 188 (240)
+..|.-.++.+.++..|..+++|...|..
T Consensus 13 q~DW~nRe~ie~in~~I~~~v~FLN~F~~ 41 (75)
T 3p8c_E 13 HQDWANREYIEIITSSIKKIADFLNSFDM 41 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677888899999999999987754
Done!