Your job contains 1 sequence.
>psy7884
MFQGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR
SRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHS
NCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVV
EFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYVTRQQLEVMYD
The BLAST search returned 10 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy7884
(240 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0004865 - symbol:Eip78C "Ecdysone-induced protein ... 410 5.7e-69 2
ZFIN|ZDB-GENE-990415-244 - symbol:nr1d2b "nuclear recepto... 240 1.4e-35 3
UNIPROTKB|F1MWI2 - symbol:NR1D2 "Uncharacterized protein"... 232 7.4e-35 3
RGD|628828 - symbol:Nr1d2 "nuclear receptor subfamily 1, ... 249 5.8e-34 2
UNIPROTKB|E2R4U0 - symbol:NR1D1 "Uncharacterized protein"... 254 7.2e-34 2
UNIPROTKB|P20393 - symbol:NR1D1 "Nuclear receptor subfami... 254 7.3e-34 2
MGI|MGI:2449205 - symbol:Nr1d2 "nuclear receptor subfamil... 248 7.3e-34 2
UNIPROTKB|G3V9L8 - symbol:Nr1d1 "Nuclear receptor subfami... 249 9.8e-34 2
UNIPROTKB|I3LL46 - symbol:NR1D2 "Uncharacterized protein"... 246 1.2e-33 2
UNIPROTKB|Q08E02 - symbol:NR1D1 "Nuclear receptor subfami... 252 1.2e-33 2
UNIPROTKB|F1NFX1 - symbol:NR1D2 "Uncharacterized protein"... 246 1.2e-33 2
UNIPROTKB|Q14995 - symbol:NR1D2 "Nuclear receptor subfami... 246 1.2e-33 2
ZFIN|ZDB-GENE-080403-6 - symbol:nr1d4b "nuclear receptor ... 253 1.4e-33 2
UNIPROTKB|E1BRD5 - symbol:NR1D2 "Uncharacterized protein"... 246 1.5e-33 2
MGI|MGI:2444210 - symbol:Nr1d1 "nuclear receptor subfamil... 250 2.0e-33 2
UNIPROTKB|G3V770 - symbol:Nr1d1 "Nuclear receptor subfami... 249 2.6e-33 2
ZFIN|ZDB-GENE-080403-5 - symbol:nr1d4a "nuclear receptor ... 260 2.6e-33 2
RGD|628827 - symbol:Nr1d1 "nuclear receptor subfamily 1, ... 249 2.6e-33 2
UNIPROTKB|E2QXI5 - symbol:NR1D2 "Uncharacterized protein"... 243 2.6e-33 2
ZFIN|ZDB-GENE-050105-1 - symbol:nr1d1 "nuclear receptor s... 244 1.0e-32 2
ZFIN|ZDB-GENE-040504-1 - symbol:nr1d2a "nuclear receptor ... 246 3.7e-32 2
ZFIN|ZDB-GENE-040724-215 - symbol:rorcb "RAR-related orph... 205 1.5e-30 2
FB|FBgn0000448 - symbol:Hr46 "Hormone receptor-like in 46... 222 2.1e-30 2
UNIPROTKB|F1LZZ3 - symbol:Rora "Protein Rora" species:101... 208 1.8e-28 2
RGD|1308419 - symbol:Rora "RAR-related orphan receptor A"... 208 2.0e-28 2
ZFIN|ZDB-GENE-990415-250 - symbol:rorca "RAR-related orph... 200 3.2e-28 2
MGI|MGI:104661 - symbol:Rora "RAR-related orphan receptor... 208 3.4e-28 2
UNIPROTKB|F1NML9 - symbol:RORA "Uncharacterized protein" ... 205 3.5e-28 2
UNIPROTKB|F1P5Z9 - symbol:RORA "Uncharacterized protein" ... 205 3.9e-28 2
ZFIN|ZDB-GENE-040426-855 - symbol:rorab "RAR-related orph... 212 3.9e-28 2
FB|FBgn0000568 - symbol:Eip75B "Ecdysone-induced protein ... 245 4.6e-28 2
UNIPROTKB|F1P607 - symbol:RORA "Uncharacterized protein" ... 205 5.3e-28 2
UNIPROTKB|F1S075 - symbol:RORA "Uncharacterized protein" ... 205 6.2e-28 2
UNIPROTKB|F1N7R0 - symbol:RORA "Uncharacterized protein" ... 205 7.2e-28 2
UNIPROTKB|P35398 - symbol:RORA "Nuclear receptor ROR-alph... 205 9.2e-28 2
RGD|3535 - symbol:Rarb "retinoic acid receptor, beta" spe... 191 1.1e-27 2
UNIPROTKB|F1SJB4 - symbol:RORB "Uncharacterized protein" ... 203 1.6e-27 2
ZFIN|ZDB-GENE-110411-42 - symbol:si:dkey-80m2.2 "si:dkey-... 197 1.8e-27 2
UNIPROTKB|F1LNV3 - symbol:F1LNV3 "Uncharacterized protein... 195 2.5e-27 2
UNIPROTKB|Q98934 - symbol:RORB "Uncharacterized protein" ... 203 2.8e-27 2
UNIPROTKB|F1MWS0 - symbol:RORB "Uncharacterized protein" ... 203 2.8e-27 2
RGD|1595785 - symbol:Rorc "RAR-related orphan receptor C"... 195 3.0e-27 2
UNIPROTKB|E1C5M3 - symbol:RORB "Uncharacterized protein" ... 203 3.1e-27 2
UNIPROTKB|F1PET8 - symbol:RORB "Uncharacterized protein" ... 203 3.1e-27 2
UNIPROTKB|Q92753 - symbol:RORB "Nuclear receptor ROR-beta... 203 3.1e-27 2
MGI|MGI:1343464 - symbol:Rorb "RAR-related orphan recepto... 203 3.1e-27 2
RGD|1306778 - symbol:Rorb "RAR-related orphan receptor B"... 203 3.1e-27 2
UNIPROTKB|P45446 - symbol:Rorb "Nuclear receptor ROR-beta... 203 3.1e-27 2
ZFIN|ZDB-GENE-060306-2 - symbol:roraa "RAR-related orphan... 206 3.6e-27 2
ZFIN|ZDB-GENE-061204-2 - symbol:rorb "RAR-related orphan ... 203 3.8e-27 2
UNIPROTKB|P51449 - symbol:RORC "Nuclear receptor ROR-gamm... 187 9.3e-27 2
UNIPROTKB|F1SGE6 - symbol:RARG "Uncharacterized protein" ... 193 9.5e-27 2
UNIPROTKB|F1NQH5 - symbol:RARB "Retinoic acid receptor be... 190 9.6e-27 2
UNIPROTKB|F1N7B3 - symbol:RORC "Uncharacterized protein" ... 195 9.9e-27 2
UNIPROTKB|P13631 - symbol:RARG "Retinoic acid receptor ga... 193 1.0e-26 2
UNIPROTKB|Q08DD4 - symbol:RARG "RARG protein" species:991... 193 1.1e-26 2
UNIPROTKB|F1PN60 - symbol:RARG "Uncharacterized protein" ... 193 1.1e-26 2
MGI|MGI:97858 - symbol:Rarg "retinoic acid receptor, gamm... 193 1.1e-26 2
UNIPROTKB|E2RGP7 - symbol:RORC "Uncharacterized protein" ... 194 1.1e-26 2
UNIPROTKB|I3L553 - symbol:RORC "Uncharacterized protein" ... 195 1.3e-26 2
UNIPROTKB|H7BYJ4 - symbol:RORC "Nuclear receptor ROR-gamm... 187 1.3e-26 2
MGI|MGI:104856 - symbol:Rorc "RAR-related orphan receptor... 195 1.4e-26 2
UNIPROTKB|D6RBI3 - symbol:RARB "Retinoic acid receptor be... 192 1.5e-26 2
UNIPROTKB|F1N9Q8 - symbol:RARB "Retinoic acid receptor be... 190 2.3e-26 2
UNIPROTKB|P10826 - symbol:RARB "Retinoic acid receptor be... 192 2.7e-26 2
UNIPROTKB|E2R2A6 - symbol:RARB "Uncharacterized protein" ... 191 3.3e-26 2
UNIPROTKB|P22448 - symbol:RARB "Retinoic acid receptor be... 190 3.6e-26 2
RGD|1583230 - symbol:Rarg "retinoic acid receptor, gamma"... 189 3.8e-26 2
RGD|3534 - symbol:Rara "retinoic acid receptor, alpha" sp... 189 4.4e-26 2
MGI|MGI:97857 - symbol:Rarb "retinoic acid receptor, beta... 191 4.6e-26 2
ZFIN|ZDB-GENE-980526-284 - symbol:raraa "retinoic acid re... 195 1.6e-25 2
ZFIN|ZDB-GENE-980526-72 - symbol:rarab "retinoic acid rec... 190 2.6e-25 2
WB|WBGene00003622 - symbol:nhr-23 species:6239 "Caenorhab... 213 2.7e-25 2
UNIPROTKB|P51126 - symbol:rara "Retinoic acid receptor al... 188 4.2e-25 2
UNIPROTKB|D4A6Q3 - symbol:Rara "Protein Rara" species:101... 189 4.7e-25 2
UNIPROTKB|Q90966 - symbol:RARA "Retinoic acid receptor al... 191 5.3e-25 2
ZFIN|ZDB-GENE-041210-169 - symbol:pparaa "peroxisome prol... 191 7.6e-25 2
ZFIN|ZDB-GENE-070314-1 - symbol:rargb "retinoic acid rece... 181 7.6e-25 2
UNIPROTKB|Q499N1 - symbol:Rara "Protein Rara" species:101... 189 8.6e-25 2
ZFIN|ZDB-GENE-980526-531 - symbol:rarga "retinoic acid re... 182 8.7e-25 2
UNIPROTKB|F1PN49 - symbol:RARA "Retinoic acid receptor al... 189 8.9e-25 2
UNIPROTKB|F1RXC9 - symbol:RARA "Uncharacterized protein" ... 189 8.9e-25 2
UNIPROTKB|G3V956 - symbol:Rara "Protein Rara" species:101... 189 8.9e-25 2
UNIPROTKB|F1NWE8 - symbol:RARB "Retinoic acid receptor be... 190 1.1e-24 2
UNIPROTKB|E2R2V0 - symbol:RARA "Uncharacterized protein" ... 189 1.1e-24 2
MGI|MGI:97856 - symbol:Rara "retinoic acid receptor, alph... 188 1.1e-24 2
UNIPROTKB|F1MWQ3 - symbol:RARA "Uncharacterized protein" ... 187 1.5e-24 2
UNIPROTKB|P10276 - symbol:RARA "Retinoic acid receptor al... 187 1.5e-24 2
UNIPROTKB|A8MUP8 - symbol:RARA "Retinoic acid receptor al... 187 1.7e-24 2
UNIPROTKB|Q5FBR4 - symbol:RARA "Retinoic acid receptor al... 189 2.3e-24 2
WB|WBGene00004786 - symbol:sex-1 species:6239 "Caenorhabd... 199 7.9e-24 2
UNIPROTKB|P51129 - symbol:rxrg "Retinoic acid receptor RX... 208 8.3e-24 2
ZFIN|ZDB-GENE-000112-47 - symbol:ppardb "peroxisome proli... 196 4.9e-23 2
UNIPROTKB|F1NSP3 - symbol:RXRG "Retinoic acid receptor RX... 198 4.9e-23 2
UNIPROTKB|Q9I878 - symbol:PPAR gamma "Uncharacterized pro... 184 5.0e-23 2
ZFIN|ZDB-GENE-980526-36 - symbol:rxrga "retinoid x recept... 192 5.2e-23 2
WB|WBGene00003675 - symbol:nhr-85 species:6239 "Caenorhab... 242 5.5e-23 2
UNIPROTKB|P18117 - symbol:thrb-a "Thyroid hormone recepto... 164 7.5e-23 2
UNIPROTKB|P15204 - symbol:thra-a "Thyroid hormone recepto... 170 1.2e-22 2
ZFIN|ZDB-GENE-990415-243 - symbol:rxrab "retinoid x recep... 188 1.7e-22 2
WARNING: Descriptions of 624 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0004865 [details] [associations]
symbol:Eip78C "Ecdysone-induced protein 78C" species:7227
"Drosophila melanogaster" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS;NAS] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=ISS;NAS] [GO:0002165 "instar larval or
pupal development" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 EMBL:AE014296 GO:GO:0046872 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 KO:K08701 eggNOG:NOG324222
EMBL:U01087 EMBL:U01088 EMBL:X98881 EMBL:X98882 EMBL:AF238308
EMBL:AF238309 EMBL:X73045 PIR:A49070 PIR:B49070 PIR:S43435
RefSeq:NP_001246862.1 RefSeq:NP_001246863.1 RefSeq:NP_524195.2
RefSeq:NP_730609.3 ProteinModelPortal:P45447 SMR:P45447
STRING:P45447 GeneID:40345 KEGG:dme:Dmel_CG18023 CTD:40345
FlyBase:FBgn0004865 InParanoid:P45447 OrthoDB:EOG4GMSC7
GenomeRNAi:40345 NextBio:818285 Bgee:P45447 GermOnline:CG18023
Uniprot:P45447
Length = 866
Score = 410 (149.4 bits), Expect = 5.7e-69, Sum P(2) = 5.7e-69
Identities = 77/137 (56%), Positives = 97/137 (70%)
Query: 104 QLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKXXXXXXXXXXXXXXXXXXXXCHESQRLW 163
+L YDVI+ VSQAH NC YTEE TR L+R+ E Q++W
Sbjct: 610 ELTVYDVIMCVSQAHRLNCSYTEELTRELMRRPVTVPQNGIASTVAESL-----EFQKIW 664
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
LWQQF+A VTP VQR+VEFAKRVPGFCD +QDDQLILIK+GFFE+W+ +V+RL +++LT
Sbjct: 665 LWQQFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLT 724
Query: 224 FSDGMYVTRQQLEVMYD 240
DG Y+TRQQLE++YD
Sbjct: 725 LDDGAYLTRQQLEILYD 741
Score = 326 (119.8 bits), Expect = 5.7e-69, Sum P(2) = 5.7e-69
Identities = 67/102 (65%), Positives = 75/102 (73%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCL+ GMSRDSVRYGRVPKRSR
Sbjct: 388 KGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLSAGMSRDSVRYGRVPKRSR 447
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQ 104
E + + S + GA P+SL S + L +Q
Sbjct: 448 ELNGAAASS---AAAGA--PASLNVDDSTSSTLHPSHLQQQQ 484
Score = 42 (19.8 bits), Expect = 4.3e-39, Sum P(2) = 4.3e-39
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 58 PKRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSST 98
P S S ++G + S++G+ +A S SST
Sbjct: 244 PSSSAAHSSPDSGCSSASSSGSSRSCGSSSASSSSSAVSST 284
>ZFIN|ZDB-GENE-990415-244 [details] [associations]
symbol:nr1d2b "nuclear receptor subfamily 1, group
D, member 2b" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-990415-244 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700
GO:GO:0006351 HOGENOM:HOG000261691 HOVERGEN:HBG106790 HSSP:P20393
EMBL:AF342942 IPI:IPI00508129 UniGene:Dr.82830
ProteinModelPortal:Q90Z64 STRING:Q90Z64 InParanoid:Q90Z64
ArrayExpress:Q90Z64 Uniprot:Q90Z64
Length = 592
Score = 240 (89.5 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 41/63 (65%), Positives = 55/63 (87%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL VGMSRD+VR+GR+PKR
Sbjct: 121 KGFFRRSIQQNIQYKKCLKNESCPIMRINRNRCQQCRFKKCLLVGMSRDAVRFGRIPKRE 180
Query: 62 RER 64
++R
Sbjct: 181 KQR 183
Score = 149 (57.5 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE+ + + L +
Sbjct: 414 IWEEFSMSFTPAVREVVEFAKRIPGFKDLSQHDQVSLLKAGTFEVLVVRFTSLFDVKERK 473
Query: 222 LTFSDG 227
+TF G
Sbjct: 474 VTFLSG 479
Score = 49 (22.3 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 24/123 (19%), Positives = 47/123 (38%)
Query: 17 RC--LRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVR-YGRVPKRSRERSDSETGSTR 73
RC R KCL++ ++R+ ++ R K M + + S ++
Sbjct: 152 RCQQCRFKKCLLVGMSRDAVRFGRIPKREKQRMLLEMQNAMNNMMNNSHGNQSLNNQTSA 211
Query: 74 VSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEY---TEEGTR 130
T + S T+GP PSS+ + + D L ++ S+ + T+ G
Sbjct: 212 ADGTSEDGTSEDSTSGPSSRSPSSSPRSNRSESSPDPELQIAMDTSSSSDSSSATDSGEE 271
Query: 131 RLV 133
++
Sbjct: 272 EVI 274
Score = 47 (21.6 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 65 SDSETGSTRVSTTGAEPPSSLETAGPVQSLP-SSTELDTKQLLTYDVILAVSQAHHSNCE 123
S S + S R + + + P L+ A S SS+ D+ + +VI V++AH
Sbjct: 230 SRSPSSSPRSNRSESSPDPELQIAMDTSSSSDSSSATDSGE---EEVIGTVTRAHQETFM 286
Query: 124 YTEE 127
Y +E
Sbjct: 287 YNQE 290
>UNIPROTKB|F1MWI2 [details] [associations]
symbol:NR1D2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003708 "retinoic acid receptor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003708
GeneTree:ENSGT00700000104109 OMA:MMNSQFS EMBL:DAAA02061153
EMBL:DAAA02061154 IPI:IPI00694618 Ensembl:ENSBTAT00000023994
Uniprot:F1MWI2
Length = 583
Score = 232 (86.7 bits), Expect = 7.4e-35, Sum P(3) = 7.4e-35
Identities = 41/65 (63%), Positives = 56/65 (86%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDS--VRYGRVPK 59
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+ VR+GR+PK
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAIAVRFGRIPK 183
Query: 60 RSRER 64
R ++R
Sbjct: 184 REKQR 188
Score = 152 (58.6 bits), Expect = 7.4e-35, Sum P(3) = 7.4e-35
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTT-DSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE L + + S + +
Sbjct: 402 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 461
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 462 VTFLSGKKYSVDDLHSM 478
Score = 45 (20.9 bits), Expect = 7.4e-35, Sum P(3) = 7.4e-35
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 81 PPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEE 127
P LE+ S PSS++ K+ +VI V++AH Y +E
Sbjct: 231 PKPQLESDSSKSSSPSSSDF-AKE----EVIGMVTRAHKDTFMYNQE 272
>RGD|628828 [details] [associations]
symbol:Nr1d2 "nuclear receptor subfamily 1, group D, member 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISO] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
RGD:628828 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0003700 GO:GO:0006351 HOVERGEN:HBG106790 EMBL:X82777
EMBL:X78135 EMBL:U20796 IPI:IPI00209944 IPI:IPI00230783 PIR:S52913
UniGene:Rn.10055 ProteinModelPortal:Q63504 SMR:Q63504
PhosphoSite:Q63504 PRIDE:Q63504 Genevestigator:Q63504
Uniprot:Q63504
Length = 578
Score = 249 (92.7 bits), Expect = 5.8e-34, Sum P(2) = 5.8e-34
Identities = 53/102 (51%), Positives = 71/102 (69%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RERSDSETGS---TRVSTTGAEPPSSLETAGP-VQSLPSSTE 99
++R E S T +ST S A P QS+P + E
Sbjct: 184 KQRMLIEMQSAMKTMMSTQFGGHLQSDTLAEPHEQSVPPAQE 225
Score = 152 (58.6 bits), Expect = 5.8e-34, Sum P(2) = 5.8e-34
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTT-DSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE L + + S + +
Sbjct: 400 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 459
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 460 VTFLSGKKYSVDDLHSM 476
>UNIPROTKB|E2R4U0 [details] [associations]
symbol:NR1D1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0034144 "negative
regulation of toll-like receptor 4 signaling pathway" evidence=IEA]
[GO:0010871 "negative regulation of receptor biosynthetic process"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0046872 GO:GO:0007623 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0003700 GO:GO:0006351 GO:GO:0071222 GO:GO:0000122
GO:GO:0044212 GO:GO:0000790 GeneTree:ENSGT00700000104109
GO:GO:0034144 CTD:9572 KO:K03728 OMA:SCHQPNS GO:GO:0010871
EMBL:AAEX03006466 RefSeq:XP_003435298.1 ProteinModelPortal:E2R4U0
Ensembl:ENSCAFT00000025626 GeneID:100688236 KEGG:cfa:100688236
Uniprot:E2R4U0
Length = 612
Score = 254 (94.5 bits), Expect = 7.2e-34, Sum P(2) = 7.2e-34
Identities = 49/92 (53%), Positives = 67/92 (72%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 151 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 210
Query: 62 RERSDSETGST-RVSTTGAEPPSSLETAGPVQ 92
++R +E S ++ LET+ P Q
Sbjct: 211 KQRMLAEMQSAMNLANNQMSSQCPLETS-PTQ 241
Score = 147 (56.8 bits), Expect = 7.2e-34, Sum P(2) = 7.2e-34
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTT-DSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE L + + S D +
Sbjct: 433 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 492
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 493 VMFLSRTTYSLQELGAM 509
Score = 36 (17.7 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 67 SETGS-TR--VSTTGAEPPSSLETAGPVQSLPSST 98
S TGS T+ + G+ PPS + P S SS+
Sbjct: 55 SPTGSLTQDPARSFGSIPPSLSDDGSPSSSSSSSS 89
>UNIPROTKB|P20393 [details] [associations]
symbol:NR1D1 "Nuclear receptor subfamily 1 group D member
1" species:9606 "Homo sapiens" [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=TAS]
[GO:0005634 "nucleus" evidence=TAS] [GO:0003714 "transcription
corepressor activity" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IDA] [GO:0010871 "negative regulation of receptor
biosynthetic process" evidence=IMP] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0034144 "negative regulation of toll-like
receptor 4 signaling pathway" evidence=IMP] [GO:0071222 "cellular
response to lipopolysaccharide" evidence=IMP] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:2000189 "positive regulation of
cholesterol homeostasis" evidence=IDA] [GO:0030522 "intracellular
receptor mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0003714 GO:GO:0005654 GO:GO:0046872 GO:GO:0007623
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0071222
GO:GO:0000122 GO:GO:0044212 GO:GO:0000790 GO:GO:0006367
Pathway_Interaction_DB:circadianpathway Reactome:REACT_24941
eggNOG:NOG324222 GO:GO:0034144 PDB:3N00 PDBsum:3N00 CTD:9572
HOGENOM:HOG000261691 KO:K03728 OMA:SCHQPNS OrthoDB:EOG4DV5KZ
GO:GO:0010871 EMBL:M24898 EMBL:M24900 EMBL:X55066 EMBL:X55067
EMBL:X72631 EMBL:BC047875 EMBL:BC056148 EMBL:M34339 EMBL:M34340
IPI:IPI00023603 PIR:A32286 RefSeq:NP_068370.1 UniGene:Hs.592130
UniGene:Hs.724 PDB:1A6Y PDB:1EF6 PDB:1GA5 PDB:1HLZ PDBsum:1A6Y
PDBsum:1EF6 PDBsum:1GA5 PDBsum:1HLZ ProteinModelPortal:P20393
SMR:P20393 DIP:DIP-48396N IntAct:P20393 STRING:P20393
PhosphoSite:P20393 DMDM:119100 PRIDE:P20393 DNASU:9572
Ensembl:ENST00000246672 GeneID:9572 KEGG:hsa:9572 UCSC:uc002htz.2
GeneCards:GC17M038249 HGNC:HGNC:7962 HPA:HPA007935 MIM:602408
neXtProt:NX_P20393 PharmGKB:PA31748 HOVERGEN:HBG106790
InParanoid:P20393 BindingDB:P20393 ChEMBL:CHEMBL1961783
ChiTaRS:NR1D1 EvolutionaryTrace:P20393 GenomeRNAi:9572
NextBio:35899 ArrayExpress:P20393 Bgee:P20393 CleanEx:HS_NR1D1
Genevestigator:P20393 GermOnline:ENSG00000126368 Uniprot:P20393
Length = 614
Score = 254 (94.5 bits), Expect = 7.3e-34, Sum P(2) = 7.3e-34
Identities = 49/92 (53%), Positives = 67/92 (72%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 153 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 212
Query: 62 RERSDSETGST-RVSTTGAEPPSSLETAGPVQ 92
++R +E S ++ LET+ P Q
Sbjct: 213 KQRMLAEMQSAMNLANNQLSSQCPLETS-PTQ 243
Score = 147 (56.8 bits), Expect = 7.3e-34, Sum P(2) = 7.3e-34
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTT-DSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE L + + S D +
Sbjct: 435 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 494
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 495 VMFLSRTTYSLQELGAM 511
Score = 47 (21.6 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 27/104 (25%), Positives = 47/104 (45%)
Query: 47 MSRDSVR-YGRVPKR-SRERSDSETGSTRVSTTG---AEPPSSLETA-------GPVQSL 94
+++D R +G +P S + S S + S+ S++ PP SL+ A P +S
Sbjct: 60 LTQDPARSFGSIPPSLSDDGSPSSSSSSSSSSSSFYNGSPPGSLQVAMEDSSRVSPSKST 119
Query: 95 PSSTELDTKQLLTY---DVILAVSQAHHSNCEYTEEGTRRLVRK 135
+ T+L+ LL DV H+ CE + RR +++
Sbjct: 120 SNITKLNGMVLLCKVCGDVASGFHYGVHA-CEGCKGFFRRSIQQ 162
Score = 37 (18.1 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 28/124 (22%), Positives = 48/124 (38%)
Query: 17 RC--LRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS-RERSDSETGSTR 73
RC R KCL + ++R+ ++ R K M + + + ET T+
Sbjct: 184 RCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQSAMNLANNQLSSQCPLETSPTQ 243
Query: 74 VSTTG----AEPPSSLET--AG----PVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCE 123
T G + PP+ + + G P Q P + + + DVI V++AH
Sbjct: 244 HPTPGPMGPSPPPAPVPSPLVGFSQFPQQLTPPRSP--SPEPTVEDVISQVARAHREIFT 301
Query: 124 YTEE 127
Y +
Sbjct: 302 YAHD 305
>MGI|MGI:2449205 [details] [associations]
symbol:Nr1d2 "nuclear receptor subfamily 1, group D, member
2" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004887 "thyroid
hormone receptor activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0030522 "intracellular receptor mediated signaling pathway"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR001728 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 EMBL:U09504 MGI:MGI:2449205 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0003700 GO:GO:0004887 eggNOG:NOG324222
GeneTree:ENSGT00700000104109 HOGENOM:HOG000261691
HOVERGEN:HBG106790 CTD:9975 KO:K08531 OMA:MMNSQFS OrthoDB:EOG4V170J
EMBL:U12142 IPI:IPI00119178 PIR:A57048 RefSeq:NP_035714.3
UniGene:Mm.26587 PDB:1EFJ PDBsum:1EFJ ProteinModelPortal:Q60674
SMR:Q60674 IntAct:Q60674 STRING:Q60674 PhosphoSite:Q60674
PRIDE:Q60674 Ensembl:ENSMUST00000090543 GeneID:353187
KEGG:mmu:353187 InParanoid:Q60674 NextBio:400331 Bgee:Q60674
CleanEx:MM_NR1D2 Genevestigator:Q60674
GermOnline:ENSMUSG00000021775 Uniprot:Q60674
Length = 576
Score = 248 (92.4 bits), Expect = 7.3e-34, Sum P(2) = 7.3e-34
Identities = 53/115 (46%), Positives = 76/115 (66%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RERSDSETGS---TRVST--TGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVI 111
++R E S T ++T +G +L +LP+ +L K L + I
Sbjct: 184 KQRMLIEMQSAMKTMMNTQFSGHLQNDTLAEQHDQSALPAQEQLRPKSQLEQENI 238
Score = 152 (58.6 bits), Expect = 7.3e-34, Sum P(2) = 7.3e-34
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTT-DSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE L + + S + +
Sbjct: 398 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 457
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 458 VTFLSGKKYSVDDLHSM 474
>UNIPROTKB|G3V9L8 [details] [associations]
symbol:Nr1d1 "Nuclear receptor subfamily 1 group D member
1" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010871 "negative
regulation of receptor biosynthetic process" evidence=IEA]
[GO:0034144 "negative regulation of toll-like receptor 4 signaling
pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 RGD:628827 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351 EMBL:CH473948
GeneTree:ENSGT00700000104109 CTD:9572 KO:K03728 RefSeq:NP_665718.2
UniGene:Rn.29848 GeneID:252917 KEGG:rno:252917 NextBio:624049
Ensembl:ENSRNOT00000055333 Uniprot:G3V9L8
Length = 508
Score = 249 (92.7 bits), Expect = 9.8e-34, Sum P(2) = 9.8e-34
Identities = 43/67 (64%), Positives = 58/67 (86%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 47 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 106
Query: 62 RERSDSE 68
++R +E
Sbjct: 107 KQRMLAE 113
Score = 147 (56.8 bits), Expect = 9.8e-34, Sum P(2) = 9.8e-34
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTT-DSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE L + + S D +
Sbjct: 329 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 388
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 389 VMFLSRTTYSLQELGAM 405
Score = 36 (17.7 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 28/124 (22%), Positives = 49/124 (39%)
Query: 17 RC--LRDGKCLVIRLNRNRCQYCRFKK-----CLAVGMSRDSVRYGRV----PKRSRERS 65
RC R KCL + ++R+ ++ R K LA + ++ ++ P +
Sbjct: 78 RCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQNAMNLANNQLSSLCPLETSPAP 137
Query: 66 DSETGSTRVSTTGAEPPSSLE--TAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCE 123
+GS S A P+ L + P Q P + + + DVI V++AH
Sbjct: 138 HPTSGSVGPSPPPAPAPTPLVGFSQFPQQLTPPRSP--SPEPTVEDVISQVARAHREIFT 195
Query: 124 YTEE 127
Y +
Sbjct: 196 YAHD 199
>UNIPROTKB|I3LL46 [details] [associations]
symbol:NR1D2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351
GeneTree:ENSGT00700000104109 OMA:MMNSQFS EMBL:FP085569
Ensembl:ENSSSCT00000025072 Uniprot:I3LL46
Length = 573
Score = 246 (91.7 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 52/119 (43%), Positives = 77/119 (64%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 119 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 178
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L++ V+ +LP +L K L + I + S
Sbjct: 179 KQRMLIEMQSAMKTMMNSQFSGHLQSDALVEHHEQTALPVQEQLRPKPQLEQENIKSSS 237
Score = 152 (58.6 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTT-DSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE L + + S + +
Sbjct: 395 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 454
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 455 VTFLSGKKYSVDDLHSM 471
Score = 42 (19.8 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 65 SDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELD 101
S S + S+ S +S +++ V S P+ST D
Sbjct: 9 SSSSSASSPASCHSEGSENSFQSSSSVPSSPNSTNSD 45
Score = 37 (18.1 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 81 PPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEE 127
P LE S P S++ K+ +VI V++AH Y +E
Sbjct: 224 PKPQLEQENIKSSSPPSSDF-AKE----EVIGMVTRAHKDTFMYNQE 265
>UNIPROTKB|Q08E02 [details] [associations]
symbol:NR1D1 "Nuclear receptor subfamily 1 group D member
1" species:9913 "Bos taurus" [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0034144 "negative
regulation of toll-like receptor 4 signaling pathway" evidence=IEA]
[GO:0010871 "negative regulation of receptor biosynthetic process"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0046872 GO:GO:0007623 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0003700 GO:GO:0006351 GO:GO:0071222 GO:GO:0000122
GO:GO:0044212 GO:GO:0000790 eggNOG:NOG324222
GeneTree:ENSGT00700000104109 GO:GO:0034144 EMBL:BC123488
IPI:IPI00716259 RefSeq:NP_001071568.1 UniGene:Bt.65340
ProteinModelPortal:Q08E02 SMR:Q08E02 STRING:Q08E02 PRIDE:Q08E02
Ensembl:ENSBTAT00000016154 GeneID:768225 KEGG:bta:768225 CTD:9572
HOGENOM:HOG000261691 InParanoid:Q08E02 KO:K03728 OMA:SCHQPNS
OrthoDB:EOG4DV5KZ NextBio:20918523 GO:GO:0010871 Uniprot:Q08E02
Length = 613
Score = 252 (93.8 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 49/92 (53%), Positives = 66/92 (71%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 154 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 213
Query: 62 RERSDSETGST-RVSTTGAEPPSSLETAGPVQ 92
++R +E S ++ LET P Q
Sbjct: 214 KQRMLAEMQSAMNLANNQLSSQCPLETP-PTQ 244
Score = 147 (56.8 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTT-DSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE L + + S D +
Sbjct: 434 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 493
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 494 VMFLSRTTYSLQELGAM 510
Score = 42 (19.8 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 26/105 (24%), Positives = 43/105 (40%)
Query: 47 MSRDSVR-YGRVPKR-----SRERSDSETGSTRVSTTGAEPPSSLETA-------GPVQS 93
+++D R +G +P S S S + S+ S PP L+ A P +S
Sbjct: 60 LTQDPARSFGSIPPSLGDDGSPSSSSSSSSSSSSSFYNGSPPGGLQVALEDSNRVSPSKS 119
Query: 94 LPSSTELDTKQLLTY---DVILAVSQAHHSNCEYTEEGTRRLVRK 135
+ T+L+ LL DV H+ CE + RR +++
Sbjct: 120 TSNITKLNGMVLLCKVCGDVASGFHYGVHA-CEGCKGFFRRSIQQ 163
>UNIPROTKB|F1NFX1 [details] [associations]
symbol:NR1D2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003708
GeneTree:ENSGT00700000104109 EMBL:AADN02001116 EMBL:AADN02001117
EMBL:AADN02001118 IPI:IPI00584067 Ensembl:ENSGALT00000031164
Uniprot:F1NFX1
Length = 548
Score = 246 (91.7 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 49/104 (47%), Positives = 69/104 (66%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 98 KGFFRRSIQQNIQYKKCLKNNNCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 157
Query: 62 RERSDSETGSTRVSTTGAEPPSSL--ETAGPVQSLPSSTELDTK 103
++R E S + ++ S L E Q +L +K
Sbjct: 158 KQRMLIEMQSAMKTMMNSQFSSHLPNEALAEHQDQAPQEDLSSK 201
Score = 151 (58.2 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTT-DSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE L + + S + +
Sbjct: 370 VWEEFSLSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDARERT 429
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 430 VTFLSGKKYSVDDLHSM 446
>UNIPROTKB|Q14995 [details] [associations]
symbol:NR1D2 "Nuclear receptor subfamily 1 group D member
2" species:9606 "Homo sapiens" [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0030522
"intracellular receptor mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005654 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0006367 eggNOG:NOG324222 HOGENOM:HOG000261691
HOVERGEN:HBG106790 EMBL:D16815 EMBL:AK313464 EMBL:AC124914
EMBL:BC045613 EMBL:L31785 IPI:IPI00788022 PIR:A57057
RefSeq:NP_005117.3 UniGene:Hs.37288 PDB:2V0V PDB:2V7C PDB:3CQV
PDBsum:2V0V PDBsum:2V7C PDBsum:3CQV ProteinModelPortal:Q14995
SMR:Q14995 STRING:Q14995 PhosphoSite:Q14995 DMDM:215274122
PRIDE:Q14995 DNASU:9975 Ensembl:ENST00000312521
Ensembl:ENST00000396676 GeneID:9975 KEGG:hsa:9975 CTD:9975
GeneCards:GC03P023961 HGNC:HGNC:7963 MIM:602304 neXtProt:NX_Q14995
PharmGKB:PA31749 InParanoid:Q14995 KO:K08531 OMA:MMNSQFS
OrthoDB:EOG4V170J BindingDB:Q14995 ChEMBL:CHEMBL1961784
EvolutionaryTrace:Q14995 GenomeRNAi:9975 NextBio:37672
ArrayExpress:Q14995 Bgee:Q14995 CleanEx:HS_NR1D2
Genevestigator:Q14995 GermOnline:ENSG00000174738 Uniprot:Q14995
Length = 579
Score = 246 (91.7 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 52/119 (43%), Positives = 77/119 (64%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 184 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQLEQENIKSSS 242
Score = 152 (58.6 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTT-DSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE L + + S + +
Sbjct: 401 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 460
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 461 VTFLSGKKYSVDDLHSM 477
Score = 37 (18.1 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 81 PPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEE 127
P LE S P S++ K+ +VI V++AH Y +E
Sbjct: 229 PKPQLEQENIKSSSPPSSDF-AKE----EVIGMVTRAHKDTFMYNQE 270
>ZFIN|ZDB-GENE-080403-6 [details] [associations]
symbol:nr1d4b "nuclear receptor subfamily 1, group D,
member 4b" species:7955 "Danio rerio" [GO:0043401 "steroid hormone
mediated signaling pathway" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0003708 "retinoic acid
receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0048384 "retinoic acid receptor signaling
pathway" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-080403-6 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003708
GeneTree:ENSGT00700000104109 EMBL:CT573157 IPI:IPI00488154
RefSeq:XP_700687.4 UniGene:Dr.89121 Ensembl:ENSDART00000082475
GeneID:571948 KEGG:dre:571948 CTD:571948 NextBio:20890772
Bgee:F1QRU1 Uniprot:F1QRU1
Length = 576
Score = 253 (94.1 bits), Expect = 1.4e-33, Sum P(2) = 1.4e-33
Identities = 52/104 (50%), Positives = 73/104 (70%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I Y+ C+++ CL++R+NRNRCQ+CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 140 KGFFRRSIQQNIHYKMCVKNENCLIMRMNRNRCQHCRFKKCLSVGMSRDAVRFGRIPKRE 199
Query: 62 RER----------SDSETGSTRVS-TTGAEPPSSLETAGPVQSL 94
++R S +E+ S + TT E PSS E +S+
Sbjct: 200 KQRLLDEMQSYMNSLNESASMDIGCTTPTETPSSPEDGQSEESI 243
Score = 144 (55.7 bits), Expect = 1.4e-33, Sum P(2) = 1.4e-33
Identities = 33/84 (39%), Positives = 51/84 (60%)
Query: 157 HESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSR 215
H SQ++W + F+ TP+V+ VVEFAK +PGF LSQ DQ++L+K G F+ L + + S
Sbjct: 393 HSSQQVW--ESFSQCFTPAVKEVVEFAKSIPGFQALSQHDQVMLLKAGTFQVLMVRFCSL 450
Query: 216 LTT-DSSLTFSDGMYVTRQQLEVM 238
+ ++TF +G L V+
Sbjct: 451 FNAKERTVTFLNGQTYPLSYLRVL 474
Score = 41 (19.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 70 GST-RVSTTGAEPPSSLETAGPVQSLPSSTE 99
GST S + P S +T P S PSS E
Sbjct: 13 GSTGSASPSPGSPSSGYQTQSP-SSQPSSPE 42
>UNIPROTKB|E1BRD5 [details] [associations]
symbol:NR1D2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351
GeneTree:ENSGT00700000104109 OMA:MMNSQFS EMBL:AADN02001116
EMBL:AADN02001117 EMBL:AADN02001118 IPI:IPI00821361
Ensembl:ENSGALT00000018420 Uniprot:E1BRD5
Length = 575
Score = 246 (91.7 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 49/104 (47%), Positives = 69/104 (66%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 125 KGFFRRSIQQNIQYKKCLKNNNCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 184
Query: 62 RERSDSETGSTRVSTTGAEPPSSL--ETAGPVQSLPSSTELDTK 103
++R E S + ++ S L E Q +L +K
Sbjct: 185 KQRMLIEMQSAMKTMMNSQFSSHLPNEALAEHQDQAPQEDLSSK 228
Score = 151 (58.2 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTT-DSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE L + + S + +
Sbjct: 397 VWEEFSLSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDARERT 456
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 457 VTFLSGKKYSVDDLHSM 473
>MGI|MGI:2444210 [details] [associations]
symbol:Nr1d1 "nuclear receptor subfamily 1, group D, member
1" species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0007623 "circadian rhythm"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0010871 "negative regulation of receptor biosynthetic process"
evidence=ISO] [GO:0034144 "negative regulation of toll-like
receptor 4 signaling pathway" evidence=ISO] [GO:0043401 "steroid
hormone mediated signaling pathway" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0071222 "cellular
response to lipopolysaccharide" evidence=ISO] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 MGI:MGI:2444210 GO:GO:0005654 GO:GO:0046872
GO:GO:0003677 GO:GO:0007623 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0003700 GO:GO:0006351 GO:GO:0071222 GO:GO:0000122
GO:GO:0044212 GO:GO:0000790 Reactome:REACT_109335
Reactome:REACT_24972 EMBL:AL590963 eggNOG:NOG324222 HSSP:P03372
GeneTree:ENSGT00700000104109 GO:GO:0034144 CTD:9572
HOGENOM:HOG000261691 KO:K03728 OMA:SCHQPNS OrthoDB:EOG4DV5KZ
GO:GO:0010871 HOVERGEN:HBG106790 EMBL:AK137398 EMBL:AK137582
EMBL:AK146430 EMBL:AK154931 EMBL:AK155597 EMBL:BC008989
EMBL:AF291821 EMBL:X86010 EMBL:AY336125 IPI:IPI00122690 PIR:S52813
RefSeq:NP_663409.2 UniGene:Mm.390397 ProteinModelPortal:Q3UV55
SMR:Q3UV55 DIP:DIP-59440N STRING:Q3UV55 PhosphoSite:Q3UV55
PRIDE:Q3UV55 Ensembl:ENSMUST00000064941 GeneID:217166
KEGG:mmu:217166 UCSC:uc007lhh.1 InParanoid:Q3UV55 NextBio:375617
Bgee:Q3UV55 CleanEx:MM_NR1D1 Genevestigator:Q3UV55 Uniprot:Q3UV55
Length = 615
Score = 250 (93.1 bits), Expect = 2.0e-33, Sum P(2) = 2.0e-33
Identities = 44/70 (62%), Positives = 59/70 (84%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 154 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 213
Query: 62 RERSDSETGS 71
++R +E S
Sbjct: 214 KQRMLAEMQS 223
Score = 147 (56.8 bits), Expect = 2.0e-33, Sum P(2) = 2.0e-33
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTT-DSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE L + + S D +
Sbjct: 436 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 495
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 496 VMFLSRTTYSLQELGAM 512
Score = 41 (19.5 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 47 MSRDSVR-YGRVPKR-SRERSDSETGSTRVSTTGA----EPPSSLETA 88
+++D R +G P S + S S S+ S++ + PP SL+ A
Sbjct: 60 LTQDPARSFGSAPPSLSDDSSPSSASSSSSSSSSSFYNGSPPGSLQVA 107
Score = 37 (18.1 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 29/124 (23%), Positives = 49/124 (39%)
Query: 17 RC--LRDGKCLVIRLNRNRCQYCRFKK-----CLAVGMSRDSVRYGRV----PKRSRERS 65
RC R KCL + ++R+ ++ R K LA S ++ ++ P +
Sbjct: 185 RCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQSAMNLANNQLSSLCPLETSPTP 244
Query: 66 DSETGSTRVSTTGAEPPSSLE--TAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCE 123
+GS S A P+ L + P Q P + + + DVI V++AH
Sbjct: 245 HPTSGSMGPSPPPAPAPTPLVGFSQFPQQLTPPRSP--SPEPTMEDVISQVARAHREIFT 302
Query: 124 YTEE 127
Y +
Sbjct: 303 YAHD 306
Score = 36 (17.7 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 67 SETGS-TR--VSTTGAEPPSSLETAGPVQSLPSST 98
S TGS T+ + G+ PPS + + P + SS+
Sbjct: 55 SPTGSLTQDPARSFGSAPPSLSDDSSPSSASSSSS 89
>UNIPROTKB|G3V770 [details] [associations]
symbol:Nr1d1 "Nuclear receptor subfamily 1 group D member
1" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010871 "negative
regulation of receptor biosynthetic process" evidence=IEA]
[GO:0034144 "negative regulation of toll-like receptor 4 signaling
pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 RGD:628827 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351 EMBL:CH473948
GeneTree:ENSGT00700000104109 OMA:SCHQPNS UniGene:Rn.29848
Ensembl:ENSRNOT00000012537 Uniprot:G3V770
Length = 614
Score = 249 (92.7 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 43/67 (64%), Positives = 58/67 (86%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 153 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 212
Query: 62 RERSDSE 68
++R +E
Sbjct: 213 KQRMLAE 219
Score = 147 (56.8 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTT-DSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE L + + S D +
Sbjct: 435 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 494
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 495 VMFLSRTTYSLQELGAM 511
Score = 46 (21.3 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 47 MSRDSVR-YGRVPKR-SRERSDSETGSTRVSTTG---AEPPSSLETA 88
+++D R +G VP S + S S S+ S++ PP SL+ A
Sbjct: 60 LTQDPARSFGTVPPSLSDDSSPSSASSSSSSSSSFYNGSPPGSLQVA 106
Score = 36 (17.7 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 28/124 (22%), Positives = 49/124 (39%)
Query: 17 RC--LRDGKCLVIRLNRNRCQYCRFKK-----CLAVGMSRDSVRYGRV----PKRSRERS 65
RC R KCL + ++R+ ++ R K LA + ++ ++ P +
Sbjct: 184 RCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQNAMNLANNQLSSLCPLETSPAP 243
Query: 66 DSETGSTRVSTTGAEPPSSLE--TAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCE 123
+GS S A P+ L + P Q P + + + DVI V++AH
Sbjct: 244 HPTSGSVGPSPPPAPAPTPLVGFSQFPQQLTPPRSP--SPEPTVEDVISQVARAHREIFT 301
Query: 124 YTEE 127
Y +
Sbjct: 302 YAHD 305
>ZFIN|ZDB-GENE-080403-5 [details] [associations]
symbol:nr1d4a "nuclear receptor subfamily 1, group D,
member 4a" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR001728 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 ZFIN:ZDB-GENE-080403-5 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887 eggNOG:NOG324222
GeneTree:ENSGT00700000104109 HOGENOM:HOG000261691
HOVERGEN:HBG106790 EMBL:BX465853 IPI:IPI00512239 RefSeq:XP_691607.3
UniGene:Dr.103114 Ensembl:ENSDART00000103169 GeneID:563150
KEGG:dre:563150 CTD:563150 OrthoDB:EOG41NTM7 NextBio:20884758
Uniprot:B8A510
Length = 570
Score = 260 (96.6 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 51/105 (48%), Positives = 73/105 (69%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I Y+ C+++ CL++R+NRNRCQ+CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 135 KGFFRRSIQQNINYKMCVKNENCLIMRMNRNRCQHCRFKKCLSVGMSRDAVRFGRIPKRE 194
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLL 106
++R E S S E +ET+ + PS E +K+ +
Sbjct: 195 KQRLLDEMQSYMNSLN--ESSMGMETSPQHEPPPSPIENQSKEAI 237
Score = 134 (52.2 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 28/66 (42%), Positives = 44/66 (66%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLT-TDSS 221
+W+ F+ TP+V+ VVEFAK +PGF +L Q DQ++L+K G F+ L + + S + S
Sbjct: 392 VWESFSQCFTPAVREVVEFAKGIPGFQELCQHDQVMLLKAGTFQVLMVRFCSLFNHKERS 451
Query: 222 LTFSDG 227
+TF +G
Sbjct: 452 VTFLNG 457
>RGD|628827 [details] [associations]
symbol:Nr1d1 "nuclear receptor subfamily 1, group D, member 1"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISO] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0007623 "circadian
rhythm" evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0010871 "negative regulation of receptor biosynthetic process"
evidence=ISO] [GO:0034144 "negative regulation of toll-like
receptor 4 signaling pathway" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=ISO]
[GO:2000189 "positive regulation of cholesterol homeostasis"
evidence=ISO] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
RGD:628827 GO:GO:0046872 GO:GO:0007623 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0003700 GO:GO:0006351 GO:GO:0071222 GO:GO:0000122
GO:GO:0044212 GO:GO:0000790 eggNOG:NOG324222 GO:GO:0034144 CTD:9572
HOGENOM:HOG000261691 KO:K03728 OrthoDB:EOG4DV5KZ GO:GO:0010871
HOVERGEN:HBG106790 EMBL:BC062047 EMBL:M25804 IPI:IPI00421519
PIR:A30226 RefSeq:NP_001106893.1 RefSeq:NP_665718.2
UniGene:Rn.29848 ProteinModelPortal:Q63503 SMR:Q63503 STRING:Q63503
GeneID:252917 KEGG:rno:252917 UCSC:RGD:628827 InParanoid:Q63503
NextBio:624049 Genevestigator:Q63503 GermOnline:ENSRNOG00000009329
Uniprot:Q63503
Length = 615
Score = 249 (92.7 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 43/67 (64%), Positives = 58/67 (86%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y RCL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 154 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 213
Query: 62 RERSDSE 68
++R +E
Sbjct: 214 KQRMLAE 220
Score = 147 (56.8 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTT-DSS 221
+W+ F+ TP+V+ VVEFAK +PGF DLSQ DQ+ L+K G FE L + + S D +
Sbjct: 436 IWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQT 495
Query: 222 LTFSDGMYVTRQQLEVM 238
+ F + Q+L M
Sbjct: 496 VMFLSRTTYSLQELGAM 512
Score = 45 (20.9 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 47 MSRDSVR-YGRVPKR-SRERSDSETGSTRVSTTGA----EPPSSLETA 88
+++D R +G VP S + S S S+ S++ + PP SL+ A
Sbjct: 60 LTQDPARSFGTVPPSLSDDSSPSSASSSSSSSSSSFYNGSPPGSLQVA 107
Score = 36 (17.7 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 28/124 (22%), Positives = 49/124 (39%)
Query: 17 RC--LRDGKCLVIRLNRNRCQYCRFKK-----CLAVGMSRDSVRYGRV----PKRSRERS 65
RC R KCL + ++R+ ++ R K LA + ++ ++ P +
Sbjct: 185 RCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQNAMNLANNQLSSLCPLETSPAP 244
Query: 66 DSETGSTRVSTTGAEPPSSLE--TAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCE 123
+GS S A P+ L + P Q P + + + DVI V++AH
Sbjct: 245 HPTSGSVGPSPPPAPAPTPLVGFSQFPQQLTPPRSP--SPEPTVEDVISQVARAHREIFT 302
Query: 124 YTEE 127
Y +
Sbjct: 303 YAHD 306
>UNIPROTKB|E2QXI5 [details] [associations]
symbol:NR1D2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351
GeneTree:ENSGT00700000104109 CTD:9975 KO:K08531 OMA:MMNSQFS
EMBL:AAEX03013558 RefSeq:XP_542763.2 Ensembl:ENSCAFT00000009281
GeneID:485643 KEGG:cfa:485643 NextBio:20859594 Uniprot:E2QXI5
Length = 576
Score = 243 (90.6 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 41/63 (65%), Positives = 56/63 (88%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RER 64
++R
Sbjct: 184 KQR 186
Score = 152 (58.6 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTT-DSS 221
+W++F+ TP+V+ VVEFAKR+PGF DLSQ DQ+ L+K G FE L + + S + +
Sbjct: 398 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 457
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + L M
Sbjct: 458 VTFLSGKKYSVDDLHSM 474
>ZFIN|ZDB-GENE-050105-1 [details] [associations]
symbol:nr1d1 "nuclear receptor subfamily 1, group d,
member 1" species:7955 "Danio rerio" [GO:0043565 "sequence-specific
DNA binding" evidence=IEA;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0004887
"thyroid hormone receptor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0043401
"steroid hormone mediated signaling pathway" evidence=IEA]
[GO:0001078 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity
involved in negative regulation of transcription" evidence=IDA;IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR001728
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-050105-1
GO:GO:0005634 GO:GO:0046872 GO:GO:0001078 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0004887 CTD:9572 HOGENOM:HOG000261691
KO:K03728 HOVERGEN:HBG106790 HSSP:P20393 EMBL:AY391444
IPI:IPI00998148 RefSeq:NP_991292.1 UniGene:Dr.85991
ProteinModelPortal:Q6TNS3 SMR:Q6TNS3 STRING:Q6TNS3 GeneID:494487
KEGG:dre:494487 NextBio:20865711 Bgee:Q6TNS3 Uniprot:Q6TNS3
Length = 637
Score = 244 (91.0 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 42/67 (62%), Positives = 58/67 (86%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 149 KGFFRRSIQQNIQYKKCLKNETCTIMRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 208
Query: 62 RERSDSE 68
++R +E
Sbjct: 209 KQRMLAE 215
Score = 147 (56.8 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSS 221
+W+ F+ TP+V+ VVEFAK +PGF LSQ+DQ+ L+K G FE+ + S L + +
Sbjct: 459 IWEDFSLSFTPAVREVVEFAKHIPGFSTLSQNDQVTLLKAGTFEVLMVRFSSLFNVKEKT 518
Query: 222 LTFSDGMYVTRQQLEVM 238
+TF G + + L+ M
Sbjct: 519 VTFISGATYSLEALKSM 535
>ZFIN|ZDB-GENE-040504-1 [details] [associations]
symbol:nr1d2a "nuclear receptor subfamily 1, group D,
member 2a" species:7955 "Danio rerio" [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-040504-1 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887
GeneTree:ENSGT00700000104109 EMBL:CU855686 IPI:IPI01024251
Ensembl:ENSDART00000099040 ArrayExpress:F1QIC9 Bgee:F1QIC9
Uniprot:F1QIC9
Length = 504
Score = 246 (91.7 bits), Expect = 3.7e-32, Sum P(2) = 3.7e-32
Identities = 52/109 (47%), Positives = 70/109 (64%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL+ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 107 KGFFRRSIQQNIQYKKCLKTESCTIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 166
Query: 62 RERS--DSETGSTRVSTTG-------AEPP--SSLETAGPVQSLPSSTE 99
++R + +T + P SS +A P S SSTE
Sbjct: 167 KQRMLLEMQTAMNNMMNNSQLQHMLHVSPSDSSSSSSASPPDSPRSSTE 215
Score = 135 (52.6 bits), Expect = 3.7e-32, Sum P(2) = 3.7e-32
Identities = 28/66 (42%), Positives = 43/66 (65%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDS-S 221
+W++F+ P+V+ VVEFAKR+PGF +LSQ DQ+ L+K G FE L + +V +
Sbjct: 326 VWEEFSRSFIPAVREVVEFAKRIPGFQELSQHDQVNLLKAGTFEVLMVRFVPLFDVQQRT 385
Query: 222 LTFSDG 227
++F G
Sbjct: 386 VSFMSG 391
>ZFIN|ZDB-GENE-040724-215 [details] [associations]
symbol:rorcb "RAR-related orphan receptor C b"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430
ZFIN:ZDB-GENE-040724-215 GO:GO:0005634 GO:GO:0046872 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
HOGENOM:HOG000010200 HOVERGEN:HBG106848 EMBL:DQ017628
IPI:IPI00498218 UniGene:Dr.12904 InParanoid:Q1L678 Uniprot:Q1L678
Length = 480
Score = 205 (77.2 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
Identities = 36/61 (59%), Positives = 46/61 (75%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMSRD+VR+GR+ K+ R
Sbjct: 31 KGFFRRSQQNNAMYSCSRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVRFGRMSKKQR 90
Query: 63 E 63
+
Sbjct: 91 D 91
Score = 162 (62.1 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
Identities = 49/170 (28%), Positives = 80/170 (47%)
Query: 71 STRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEY-TEEGT 129
+ RV P +S T + S+P + L + +T +V+ ++H C+Y TEE
Sbjct: 199 AVRVKHEYIMPDNSRLTHSLLGSIPDNCSLHDIERITQNVV----KSHLETCQYSTEE-- 252
Query: 130 RRLVRKXXXXXXXXXXXXXXXXXXXXCHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGF 189
++K W+WQQ A +T ++Q VVEFAKR+ GF
Sbjct: 253 ---LKKHTWSLYTPEETRSFQLKSAE-------WMWQQCALQITNAIQYVVEFAKRISGF 302
Query: 190 CDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT-FSDGMYVTRQQLEVM 238
+L Q+DQ+IL+K G E+ + + R S+ T F DG + + Q + +
Sbjct: 303 MELCQNDQIILLKAGCLEVLLIRMCRAYNSSNNTMFFDGKFASPQLFKAL 352
>FB|FBgn0000448 [details] [associations]
symbol:Hr46 "Hormone receptor-like in 46" species:7227
"Drosophila melanogaster" [GO:0000977 "RNA polymerase II regulatory
region sequence-specific DNA binding" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISS;NAS;IDA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=ISS;NAS;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0007552 "metamorphosis" evidence=TAS] [GO:0040034
"regulation of development, heterochronic" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0043401 "steroid
hormone mediated signaling pathway" evidence=IEA] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0004887
"thyroid hormone receptor activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0016319 "mushroom body development"
evidence=IMP] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 EMBL:AE013599 GO:GO:0005634
GO:GO:0046872 GO:GO:0004879 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0000122 GO:GO:0007552 GO:GO:0016319 GO:GO:0040034
GO:GO:0000977 GO:GO:0004887 eggNOG:NOG324222 EMBL:M90806 PIR:A46146
RefSeq:NP_001246236.1 RefSeq:NP_788303.1 UniGene:Dm.5036
ProteinModelPortal:P31396 SMR:P31396 IntAct:P31396 STRING:P31396
PRIDE:P31396 EnsemblMetazoa:FBtr0088368 EnsemblMetazoa:FBtr0306345
GeneID:36073 KEGG:dme:Dmel_CG33183 CTD:36073 FlyBase:FBgn0000448
GeneTree:ENSGT00700000104109 InParanoid:P31396 KO:K14033
OrthoDB:EOG4HT77R GenomeRNAi:36073 NextBio:796700 Bgee:P31396
GermOnline:CG33183 Uniprot:P31396
Length = 487
Score = 222 (83.2 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
Identities = 44/95 (46%), Positives = 64/95 (67%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R+ +C+V R+NRNRCQYCR +KCL +GMSRD+V++GR+ K+ R
Sbjct: 72 KGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQR 131
Query: 63 ERSDSETGSTRV---STTGAEPPSSL-ETAGPVQS 93
E+ + E R + + A P SS+ +T P S
Sbjct: 132 EKVEDEVRFHRAQMRAQSDAAPDSSVYDTQTPSSS 166
Score = 143 (55.4 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLT--TDSS 221
LW A +T +Q ++EFAK +PGF LSQDDQ++L+K G FEL I +SRL + ++
Sbjct: 283 LWLDCAEKLTQMIQNIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDLSQNA 342
Query: 222 LTFSDGM 228
+ + D M
Sbjct: 343 VLYGDVM 349
>UNIPROTKB|F1LZZ3 [details] [associations]
symbol:Rora "Protein Rora" species:10116 "Rattus
norvegicus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003079 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:1308419 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0030522 GO:GO:0006809 GO:GO:0021702 GO:GO:0046068
GO:GO:0043030 GeneTree:ENSGT00700000104109 IPI:IPI00373337
Ensembl:ENSRNOT00000013142 ArrayExpress:F1LZZ3 Uniprot:F1LZZ3
Length = 457
Score = 208 (78.3 bits), Expect = 1.8e-28, Sum P(2) = 1.8e-28
Identities = 46/111 (41%), Positives = 64/111 (57%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R +RNRCQ+CR +KCLAVGMSRD+V++GR+ K+ R
Sbjct: 28 KGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQR 87
Query: 63 ERSDSETGSTRVSTTGAE---PPSSLETAGPVQSLPSS--TELDTKQLLTY 108
+ +E R+ + P E P ++ ++ TEL L TY
Sbjct: 88 DSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHD-DLSTY 137
Score = 138 (53.6 bits), Expect = 1.8e-28, Sum P(2) = 1.8e-28
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 160 QRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL-WIGYVSRLTT 218
QR +WQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ +I +
Sbjct: 249 QREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDS 308
Query: 219 DSSLTFSDGMYVT 231
++ + DG Y +
Sbjct: 309 QNNTVYFDGKYAS 321
>RGD|1308419 [details] [associations]
symbol:Rora "RAR-related orphan receptor A" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISO] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0006809 "nitric oxide biosynthetic process"
evidence=ISO] [GO:0007623 "circadian rhythm" evidence=IEP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=ISO]
[GO:0043030 "regulation of macrophage activation" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0046068 "cGMP metabolic
process" evidence=ISO] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003079 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:1308419 GO:GO:0005634 GO:GO:0046872
GO:GO:0007623 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0030522 GO:GO:0006809 GO:GO:0021702
GO:GO:0046068 GO:GO:0043030 IPI:IPI00780466
Ensembl:ENSRNOT00000057506 UCSC:RGD:1308419 ArrayExpress:F1M505
Uniprot:F1M505
Length = 466
Score = 208 (78.3 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 46/111 (41%), Positives = 64/111 (57%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R +RNRCQ+CR +KCLAVGMSRD+V++GR+ K+ R
Sbjct: 37 KGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQR 96
Query: 63 ERSDSETGSTRVSTTGAE---PPSSLETAGPVQSLPSS--TELDTKQLLTY 108
+ +E R+ + P E P ++ ++ TEL L TY
Sbjct: 97 DSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHD-DLSTY 146
Score = 138 (53.6 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 160 QRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL-WIGYVSRLTT 218
QR +WQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ +I +
Sbjct: 258 QREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDS 317
Query: 219 DSSLTFSDGMYVT 231
++ + DG Y +
Sbjct: 318 QNNTVYFDGKYAS 330
>ZFIN|ZDB-GENE-990415-250 [details] [associations]
symbol:rorca "RAR-related orphan receptor C a"
species:7955 "Danio rerio" [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003079 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 ZFIN:ZDB-GENE-990415-250 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
GeneTree:ENSGT00700000104109 EMBL:CR450766 IPI:IPI00844980
ProteinModelPortal:F1QGI9 Ensembl:ENSDART00000100484 Bgee:F1QGI9
Uniprot:F1QGI9
Length = 480
Score = 200 (75.5 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 34/61 (55%), Positives = 46/61 (75%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R C++ R NRNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 31 KGFFRRSQQNNAMYSCSRQRNCIIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 90
Query: 63 E 63
+
Sbjct: 91 D 91
Score = 145 (56.1 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 32/77 (41%), Positives = 50/77 (64%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTT--DSS 221
LWQQ A +T ++Q VVEFAKR+ GF DLSQ+DQ+IL+K G ++ + + R +++
Sbjct: 276 LWQQCAVQLTNAIQYVVEFAKRISGFMDLSQNDQIILLKAGCLDVLLIRMCRAYNPINNT 335
Query: 222 LTFSDGMYVTRQQLEVM 238
L F DG + + Q + +
Sbjct: 336 LLF-DGKFASPQLFKAL 351
>MGI|MGI:104661 [details] [associations]
symbol:Rora "RAR-related orphan receptor alpha" species:10090
"Mus musculus" [GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO;IDA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006809 "nitric
oxide biosynthetic process" evidence=IMP] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IMP] [GO:0030522 "intracellular receptor
mediated signaling pathway" evidence=IEA] [GO:0043030 "regulation
of macrophage activation" evidence=IMP] [GO:0043401 "steroid
hormone mediated signaling pathway" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IGI;ISO;IDA] [GO:0046068 "cGMP metabolic process"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003079 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 MGI:MGI:104661 GO:GO:0005654 GO:GO:0046872
GO:GO:0003677 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0003700 GO:GO:0030522 GO:GO:0006809
GO:GO:0021702 GO:GO:0046068 Reactome:REACT_109335
Reactome:REACT_24972 GO:GO:0043030 eggNOG:NOG324222
GeneTree:ENSGT00700000104109 CTD:6095 HOGENOM:HOG000010200
HOVERGEN:HBG106848 KO:K08532 OMA:VAAQIEI ChiTaRS:RORA EMBL:U53228
EMBL:Y08640 EMBL:Z82994 EMBL:S82720 EMBL:D45910 EMBL:BC003757
IPI:IPI00122512 IPI:IPI00395039 PIR:S68517 RefSeq:NP_038674.1
UniGene:Mm.378450 UniGene:Mm.391890 UniGene:Mm.427266
UniGene:Mm.490614 ProteinModelPortal:P51448 SMR:P51448
DIP:DIP-35351N IntAct:P51448 STRING:P51448 PhosphoSite:P51448
PRIDE:P51448 Ensembl:ENSMUST00000034766 Ensembl:ENSMUST00000113624
GeneID:19883 KEGG:mmu:19883 InParanoid:P51448 OrthoDB:EOG4GHZP3
NextBio:297388 Bgee:P51448 CleanEx:MM_RORA Genevestigator:P51448
GermOnline:ENSMUSG00000032238 Uniprot:P51448
Length = 523
Score = 208 (78.3 bits), Expect = 3.4e-28, Sum P(2) = 3.4e-28
Identities = 46/111 (41%), Positives = 64/111 (57%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R +RNRCQ+CR +KCLAVGMSRD+V++GR+ K+ R
Sbjct: 94 KGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQR 153
Query: 63 ERSDSETGSTRVSTTGAE---PPSSLETAGPVQSLPSS--TELDTKQLLTY 108
+ +E R+ + P E P ++ ++ TEL L TY
Sbjct: 154 DSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHD-DLSTY 203
Score = 138 (53.6 bits), Expect = 3.4e-28, Sum P(2) = 3.4e-28
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 160 QRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL-WIGYVSRLTT 218
QR +WQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ +I +
Sbjct: 315 QREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDS 374
Query: 219 DSSLTFSDGMYVT 231
++ + DG Y +
Sbjct: 375 QNNTVYFDGKYAS 387
>UNIPROTKB|F1NML9 [details] [associations]
symbol:RORA "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006809 "nitric oxide
biosynthetic process" evidence=IEA] [GO:0021702 "cerebellar
Purkinje cell differentiation" evidence=IEA] [GO:0043030
"regulation of macrophage activation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0046068 "cGMP metabolic process"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003079 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0030522 GO:GO:0006809 GO:GO:0046068 GO:GO:0043030
GeneTree:ENSGT00700000104109 OMA:VAAQIEI EMBL:AADN02040416
IPI:IPI00581652 Ensembl:ENSGALT00000005967 Uniprot:F1NML9
Length = 469
Score = 205 (77.2 bits), Expect = 3.5e-28, Sum P(2) = 3.5e-28
Identities = 43/103 (41%), Positives = 61/103 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R +RNRCQ+CR +KCLAVGMSRD+V++GR+ K+ R
Sbjct: 39 KGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQR 98
Query: 63 ERSDSETGSTRVSTTGAE---PPSSLETAGPVQSLPSS--TEL 100
+ +E R+ + P E P ++ ++ TEL
Sbjct: 99 DSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNITTNGLTEL 141
Score = 139 (54.0 bits), Expect = 3.5e-28, Sum P(2) = 3.5e-28
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 160 QRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL-WIGYVSRLTT 218
QR +WQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ +I +
Sbjct: 260 QREVMWQLCAVKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDS 319
Query: 219 DSSLTFSDGMYVT 231
++ + DG Y +
Sbjct: 320 QNNTVYFDGKYAS 332
>UNIPROTKB|F1P5Z9 [details] [associations]
symbol:RORA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0030522 GeneTree:ENSGT00700000104109 EMBL:AAEX03016182
Ensembl:ENSCAFT00000026448 Uniprot:F1P5Z9
Length = 458
Score = 205 (77.2 bits), Expect = 3.9e-28, Sum P(2) = 3.9e-28
Identities = 43/103 (41%), Positives = 61/103 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R +RNRCQ+CR +KCLAVGMSRD+V++GR+ K+ R
Sbjct: 29 KGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQR 88
Query: 63 ERSDSETGSTRVSTTGAE---PPSSLETAGPVQSLPSS--TEL 100
+ +E R+ + P E P ++ ++ TEL
Sbjct: 89 DSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTEL 131
Score = 138 (53.6 bits), Expect = 3.9e-28, Sum P(2) = 3.9e-28
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 160 QRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL-WIGYVSRLTT 218
QR +WQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ +I +
Sbjct: 250 QREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDS 309
Query: 219 DSSLTFSDGMYVT 231
++ + DG Y +
Sbjct: 310 QNNTVYFDGKYAS 322
>ZFIN|ZDB-GENE-040426-855 [details] [associations]
symbol:rorab "RAR-related orphan receptor A,
paralog b" species:7955 "Danio rerio" [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003079 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-040426-855 GO:GO:0005634
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0030522 eggNOG:NOG324222 GeneTree:ENSGT00700000104109
HOGENOM:HOG000010200 HOVERGEN:HBG106848 EMBL:BX927082 EMBL:BC159203
IPI:IPI00619432 UniGene:Dr.107956 SMR:B0JZJ5
Ensembl:ENSDART00000099477 Uniprot:B0JZJ5
Length = 492
Score = 212 (79.7 bits), Expect = 3.9e-28, Sum P(2) = 3.9e-28
Identities = 43/97 (44%), Positives = 60/97 (61%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q + Y C R CL+ R +RNRCQ+CR +KCLAVGMSRD+V++GR+ K+ R
Sbjct: 38 KGFFRRSQQGTVSYSCPRQKSCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQR 97
Query: 63 ERSDSETGSTRVST----TGAEPPSSLETAGPVQSLP 95
+ +E R TG E + E+ P ++ P
Sbjct: 98 DSLFAEVQKHRQQQQDDKTGDESEKNQESQAPGEAEP 134
Score = 132 (51.5 bits), Expect = 3.9e-28, Sum P(2) = 3.9e-28
Identities = 27/67 (40%), Positives = 41/67 (61%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL-WIGYVSRLTTDSSL 222
+WQ A VT +VQ VVEFAKR+ GF +L Q+DQ++L+K G E+ ++ + ++
Sbjct: 270 MWQLCAVKVTEAVQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFVRMCRAYNSQNNT 329
Query: 223 TFSDGMY 229
F D Y
Sbjct: 330 VFFDSKY 336
>FB|FBgn0000568 [details] [associations]
symbol:Eip75B "Ecdysone-induced protein 75B" species:7227
"Drosophila melanogaster" [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=ISS;NAS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA;NAS] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA;NAS] [GO:0007591
"molting cycle, chitin-based cuticle" evidence=IMP;NAS] [GO:0048477
"oogenesis" evidence=NAS] [GO:0035072 "ecdysone-mediated induction
of salivary gland cell autophagic cell death" evidence=NAS]
[GO:0018990 "ecdysis, chitin-based cuticle" evidence=IMP]
[GO:0007553 "regulation of ecdysteroid metabolic process"
evidence=IMP] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0004887 "thyroid hormone receptor
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0020037 "heme binding" evidence=IDA] [GO:0003677
"DNA binding" evidence=IDA] [GO:0035075 "response to ecdysone"
evidence=IMP] [GO:0010468 "regulation of gene expression"
evidence=IDA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 EMBL:AE014296
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0048477 GO:GO:0020037 GO:GO:0019730 GO:GO:0035072
GO:GO:0004887 GO:GO:0018990 GeneTree:ENSGT00700000104361 KO:K08701
UniGene:Dm.21411 GeneID:39999 KEGG:dme:Dmel_CG8127 CTD:39999
FlyBase:FBgn0000568 GenomeRNAi:39999 NextBio:816484
GermOnline:CG8127 GO:GO:0007553 EMBL:X15586 PIR:S05979
RefSeq:NP_001246821.1 RefSeq:NP_001246822.1 RefSeq:NP_730321.1
ProteinModelPortal:P13055 SMR:P13055 STRING:P13055
EnsemblMetazoa:FBtr0075148 EnsemblMetazoa:FBtr0306813
EnsemblMetazoa:FBtr0306814 InParanoid:P13055 PhylomeDB:P13055
Bgee:P13055 Uniprot:P13055
Length = 1412
Score = 245 (91.3 bits), Expect = 4.6e-28, Sum P(2) = 4.6e-28
Identities = 42/63 (66%), Positives = 56/63 (88%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I+YR C ++ +C ++R+NRNRCQYCR KKC+AVGMSRD+VR+GRVPKR
Sbjct: 479 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKRE 538
Query: 62 RER 64
+ R
Sbjct: 539 KAR 541
Score = 112 (44.5 bits), Expect = 4.6e-28, Sum P(2) = 4.6e-28
Identities = 41/155 (26%), Positives = 72/155 (46%)
Query: 84 SLETAGPVQSLPSSTELDTKQLLTYDVILAVSQAHHSNCEYTEEGTRRLVRKXXXXXXXX 143
S + G ++L +TELD + L + AV +AH CE+T+E + R+
Sbjct: 549 STQNRGQQRAL--ATELDDQPRL----LAAVLRAHLETCEFTKEKVSAM-RQRARDCPSY 601
Query: 144 XXXXXXXXXXXXCHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKM 203
E Q + Q AHV ++ V++FA +PGF L+QDD+ L+K
Sbjct: 602 SMPTLLACPLNPAPELQSEQEFSQRFAHV---IRGVIDFAGMIPGFQLLTQDDKFTLLKA 658
Query: 204 GFFE-LWIGYVSRLTTD-SSLTFSDGMYVTRQQLE 236
G F+ L++ + + +S+ +G + R ++
Sbjct: 659 GLFDALFVRLICMFDSSINSIICLNGQVMRRDAIQ 693
Score = 41 (19.5 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSS 97
+R + + V+ + PPS+ + P S P+S
Sbjct: 1359 QRYPTLSADVTVTASNGGPPSAAASPAPSSSPPAS 1393
Score = 37 (18.1 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 81 PPSSLETAGPVQSLPSSTELDTKQLLTYD--VILAVSQA 117
P S+ + PV+S ST K+ + D V+ V QA
Sbjct: 1039 PQLSVVSVSPVRSPQPSTSSHLKRQIVEDMPVLKRVLQA 1077
>UNIPROTKB|F1P607 [details] [associations]
symbol:RORA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0030522 GeneTree:ENSGT00700000104109 OMA:VAAQIEI
EMBL:AAEX03016182 Ensembl:ENSCAFT00000026445 Uniprot:F1P607
Length = 487
Score = 205 (77.2 bits), Expect = 5.3e-28, Sum P(2) = 5.3e-28
Identities = 43/103 (41%), Positives = 61/103 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R +RNRCQ+CR +KCLAVGMSRD+V++GR+ K+ R
Sbjct: 38 KGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQR 97
Query: 63 ERSDSETGSTRVSTTGAE---PPSSLETAGPVQSLPSS--TEL 100
+ +E R+ + P E P ++ ++ TEL
Sbjct: 98 DSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTEL 140
Score = 138 (53.6 bits), Expect = 5.3e-28, Sum P(2) = 5.3e-28
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 160 QRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL-WIGYVSRLTT 218
QR +WQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ +I +
Sbjct: 259 QREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDS 318
Query: 219 DSSLTFSDGMYVT 231
++ + DG Y +
Sbjct: 319 QNNTVYFDGKYAS 331
>UNIPROTKB|F1S075 [details] [associations]
symbol:RORA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046068 "cGMP metabolic process" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043030 "regulation of
macrophage activation" evidence=IEA] [GO:0021702 "cerebellar
Purkinje cell differentiation" evidence=IEA] [GO:0006809 "nitric
oxide biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003079 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0046872 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0030522
GO:GO:0006809 GO:GO:0021702 GO:GO:0046068 GO:GO:0043030
GeneTree:ENSGT00700000104109 OMA:VAAQIEI EMBL:CU571371
EMBL:CU618323 Ensembl:ENSSSCT00000005055 Uniprot:F1S075
Length = 506
Score = 205 (77.2 bits), Expect = 6.2e-28, Sum P(2) = 6.2e-28
Identities = 43/103 (41%), Positives = 61/103 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R +RNRCQ+CR +KCLAVGMSRD+V++GR+ K+ R
Sbjct: 31 KGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQR 90
Query: 63 ERSDSETGSTRVSTTGAE---PPSSLETAGPVQSLPSS--TEL 100
+ +E R+ + P E P ++ ++ TEL
Sbjct: 91 DSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTEL 133
Score = 138 (53.6 bits), Expect = 6.2e-28, Sum P(2) = 6.2e-28
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 160 QRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL-WIGYVSRLTT 218
QR +WQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ +I +
Sbjct: 298 QREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDS 357
Query: 219 DSSLTFSDGMYVT 231
++ + DG Y +
Sbjct: 358 QNNTVYFDGKYAS 370
>UNIPROTKB|F1N7R0 [details] [associations]
symbol:RORA "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046068 "cGMP metabolic process" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043030 "regulation of
macrophage activation" evidence=IEA] [GO:0021702 "cerebellar
Purkinje cell differentiation" evidence=IEA] [GO:0006809 "nitric
oxide biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003079 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0046872 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0030522
GO:GO:0006809 GO:GO:0021702 GO:GO:0046068 GO:GO:0043030
GeneTree:ENSGT00700000104109 CTD:6095 KO:K08532 OMA:VAAQIEI
EMBL:DAAA02028787 EMBL:DAAA02028778 EMBL:DAAA02028779
EMBL:DAAA02028780 EMBL:DAAA02028781 EMBL:DAAA02028782
EMBL:DAAA02028783 EMBL:DAAA02028784 EMBL:DAAA02028785
EMBL:DAAA02028786 IPI:IPI00708401 RefSeq:NP_001179790.1
UniGene:Bt.56061 Ensembl:ENSBTAT00000021144 GeneID:535597
KEGG:bta:535597 NextBio:20876785 Uniprot:F1N7R0
Length = 523
Score = 205 (77.2 bits), Expect = 7.2e-28, Sum P(2) = 7.2e-28
Identities = 43/103 (41%), Positives = 61/103 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R +RNRCQ+CR +KCLAVGMSRD+V++GR+ K+ R
Sbjct: 94 KGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQR 153
Query: 63 ERSDSETGSTRVSTTGAE---PPSSLETAGPVQSLPSS--TEL 100
+ +E R+ + P E P ++ ++ TEL
Sbjct: 154 DSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTEL 196
Score = 138 (53.6 bits), Expect = 7.2e-28, Sum P(2) = 7.2e-28
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 160 QRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL-WIGYVSRLTT 218
QR +WQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ +I +
Sbjct: 315 QREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDS 374
Query: 219 DSSLTFSDGMYVT 231
++ + DG Y +
Sbjct: 375 QNNTVYFDGKYAS 387
>UNIPROTKB|P35398 [details] [associations]
symbol:RORA "Nuclear receptor ROR-alpha" species:9606 "Homo
sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0006809 "nitric oxide biosynthetic process" evidence=IEA]
[GO:0021702 "cerebellar Purkinje cell differentiation"
evidence=IEA] [GO:0043030 "regulation of macrophage activation"
evidence=IEA] [GO:0046068 "cGMP metabolic process" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007165 "signal
transduction" evidence=NAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0030522 "intracellular receptor mediated signaling pathway"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005654
GO:GO:0046872 Pathway_Interaction_DB:hif1_tfpathway GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0006809
EMBL:CH471082 GO:GO:0006367 EMBL:AC087385 GO:GO:0021702
GO:GO:0046068 Reactome:REACT_24941 GO:GO:0043030 eggNOG:NOG324222
EMBL:U04897 EMBL:U04898 EMBL:U04899 EMBL:L14611 EMBL:HQ692818
EMBL:AC009560 EMBL:AC012404 EMBL:AC022898 EMBL:AC079068
EMBL:AC107241 EMBL:AC107905 EMBL:BC008831 EMBL:BC100987
EMBL:BC100988 EMBL:BC100989 EMBL:BC100990 IPI:IPI00018225
IPI:IPI00107635 IPI:IPI00218544 IPI:IPI00243584 PIR:A53196
PIR:A56856 PIR:B53196 PIR:C53196 RefSeq:NP_002934.1
RefSeq:NP_599022.1 RefSeq:NP_599023.1 RefSeq:NP_599024.1
UniGene:Hs.560343 UniGene:Hs.655155 PDB:1N83 PDB:1S0X PDBsum:1N83
PDBsum:1S0X ProteinModelPortal:P35398 SMR:P35398 DIP:DIP-29938N
IntAct:P35398 MINT:MINT-2855668 STRING:P35398 PhosphoSite:P35398
DMDM:548814 PRIDE:P35398 Ensembl:ENST00000261523
Ensembl:ENST00000309157 Ensembl:ENST00000335670
Ensembl:ENST00000449337 GeneID:6095 KEGG:hsa:6095 UCSC:uc002agt.4
UCSC:uc002agv.3 UCSC:uc002agw.3 UCSC:uc002agx.3 CTD:6095
GeneCards:GC15M060780 HGNC:HGNC:10258 HPA:CAB009861 MIM:600825
neXtProt:NX_P35398 PharmGKB:PA34630 HOGENOM:HOG000010200
HOVERGEN:HBG106848 InParanoid:P35398 KO:K08532 OMA:VAAQIEI
PhylomeDB:P35398 BindingDB:P35398 ChEMBL:CHEMBL5868 ChiTaRS:RORA
EvolutionaryTrace:P35398 GenomeRNAi:6095 NextBio:23703
ArrayExpress:P35398 Bgee:P35398 CleanEx:HS_RORA
Genevestigator:P35398 GermOnline:ENSG00000069667 Uniprot:P35398
Length = 556
Score = 205 (77.2 bits), Expect = 9.2e-28, Sum P(2) = 9.2e-28
Identities = 43/103 (41%), Positives = 61/103 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R +RNRCQ+CR +KCLAVGMSRD+V++GR+ K+ R
Sbjct: 127 KGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQR 186
Query: 63 ERSDSETGSTRVSTTGAE---PPSSLETAGPVQSLPSS--TEL 100
+ +E R+ + P E P ++ ++ TEL
Sbjct: 187 DSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTEL 229
Score = 138 (53.6 bits), Expect = 9.2e-28, Sum P(2) = 9.2e-28
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 160 QRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL-WIGYVSRLTT 218
QR +WQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ +I +
Sbjct: 348 QREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDS 407
Query: 219 DSSLTFSDGMYVT 231
++ + DG Y +
Sbjct: 408 QNNTVYFDGKYAS 420
>RGD|3535 [details] [associations]
symbol:Rarb "retinoic acid receptor, beta" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0001657 "ureteric bud
development" evidence=ISO] [GO:0003417 "growth plate cartilage
development" evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0003708 "retinoic
acid receptor activity" evidence=NAS;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0008144 "drug binding" evidence=IDA] [GO:0008285 "negative
regulation of cell proliferation" evidence=ISO] [GO:0021756 "striatum
development" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0031641 "regulation of myelination" evidence=IDA] [GO:0032331
"negative regulation of chondrocyte differentiation" evidence=ISO]
[GO:0032403 "protein complex binding" evidence=IPI] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=ISO] [GO:0035264
"multicellular organism growth" evidence=ISO] [GO:0043065 "positive
regulation of apoptotic process" evidence=ISO] [GO:0043068 "positive
regulation of programmed cell death" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] [GO:0045666 "positive
regulation of neuron differentiation" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046965 "retinoid X receptor binding"
evidence=IPI] [GO:0048048 "embryonic eye morphogenesis" evidence=ISO]
[GO:0048384 "retinoic acid receptor signaling pathway" evidence=IDA]
[GO:0048566 "embryonic digestive tract development" evidence=ISO]
[GO:0055012 "ventricular cardiac muscle cell differentiation"
evidence=ISO] [GO:0061037 "negative regulation of cartilage
development" evidence=ISO] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 RGD:3535 GO:GO:0005634 GO:GO:0046872 GO:GO:0008144
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045666 GO:GO:0031641
HOVERGEN:HBG005606 GO:GO:0003708 eggNOG:NOG297448 HSSP:P10826
EMBL:AJ002942 IPI:IPI00763374 UniGene:Rn.232243
ProteinModelPortal:O54746 STRING:O54746 Genevestigator:O54746
Uniprot:O54746
Length = 291
Score = 191 (72.3 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 36/66 (54%), Positives = 47/66 (71%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSE 68
E S E
Sbjct: 161 EPSKQE 166
Score = 134 (52.2 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS 220
L LW +F+ T + ++VEFAKR+PGF L+ DQ+ L+K ++ I + +R T +
Sbjct: 215 LGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQ 274
Query: 221 -SLTFSDGMYVTRQQL 235
++TFSDG+ + R Q+
Sbjct: 275 DTMTFSDGLTLNRTQM 290
>UNIPROTKB|F1SJB4 [details] [associations]
symbol:RORB "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0042462 "eye photoreceptor cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0045893 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0030522 GO:GO:0042462
GeneTree:ENSGT00700000104109 OMA:SGHTMRA EMBL:CU468713
EMBL:CU062494 Ensembl:ENSSSCT00000005803 Uniprot:F1SJB4
Length = 452
Score = 203 (76.5 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
Identities = 35/61 (57%), Positives = 46/61 (75%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 31 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 90
Query: 63 E 63
+
Sbjct: 91 D 91
Score = 134 (52.2 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
Identities = 53/187 (28%), Positives = 84/187 (44%)
Query: 61 SRERSDSETGSTR-VSTTGAEPPSSLETAGPVQSLPSSTELDTKQL---LTYDVILAVSQ 116
S + S ++G T ST AEP L + V +L + + + QL +T I ++Q
Sbjct: 159 SGQPSPDQSGLTDWESTDKAEPIYDLTS---VPNLFTYSSFNNGQLAPGITMTEIDRIAQ 215
Query: 117 ----AHHSNCEYTEEGTRRLVRKXXXXXXXXXXXXXXXXXXXXCHESQRLWLWQQFAAHV 172
+H C+YT E +L + R LWQQ A +
Sbjct: 216 NIIKSHLETCQYTMEELHQLAWQTHTYEEIKAY-----------QSKSREALWQQCAIQI 264
Query: 173 TPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT-FSDGMYVT 231
T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ + + R + T +G Y
Sbjct: 265 THAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGG 324
Query: 232 RQQLEVM 238
Q + +
Sbjct: 325 MQMFKAL 331
>ZFIN|ZDB-GENE-110411-42 [details] [associations]
symbol:si:dkey-80m2.2 "si:dkey-80m2.2" species:7955
"Danio rerio" [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-110411-42
GO:GO:0005634 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0030522 GeneTree:ENSGT00700000104109
EMBL:CR388088 EMBL:CR628385 EMBL:CR749162 IPI:IPI00995584
ProteinModelPortal:E7FBX0 Ensembl:ENSDART00000128798 Uniprot:E7FBX0
Length = 480
Score = 197 (74.4 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
Identities = 42/102 (41%), Positives = 61/102 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS ++Y C R C + R +RNRCQ CR KKC+A GMSRD+V++GR+ KR R
Sbjct: 32 KGFFRRSQSSSVQYSCSRQSNCPIDRASRNRCQSCRLKKCVAQGMSRDAVKFGRMSKRQR 91
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELDTKQ 104
+ +E R +S++ P+Q+ SS DT++
Sbjct: 92 DSLFAEVERHRQHQR--LQANSVQEPQPLQAYRSSK--DTRE 129
Score = 141 (54.7 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL-TTDSSL 222
+WQ A ++ +VQ VVEFAKR+PGF L Q+DQ+ L+K G E+ + ++R+ T ++
Sbjct: 277 MWQYCAVRLSDAVQYVVEFAKRIPGFRQLCQNDQIALLKSGSMEVVLVRMTRMFNTANNT 336
Query: 223 TFSDGMY 229
F DG Y
Sbjct: 337 VFFDGKY 343
>UNIPROTKB|F1LNV3 [details] [associations]
symbol:F1LNV3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003079 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
GeneTree:ENSGT00700000104109 EMBL:AC133978 IPI:IPI00948562
Ensembl:ENSRNOT00000067042 ArrayExpress:F1LNV3 Uniprot:F1LNV3
Length = 486
Score = 195 (73.7 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 34/66 (51%), Positives = 48/66 (72%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q + Y C R C + R +RNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 30 KGFFRRSQQCNVAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 89
Query: 63 ERSDSE 68
+ +E
Sbjct: 90 DSLHAE 95
Score = 142 (55.0 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 29/75 (38%), Positives = 50/75 (66%)
Query: 157 HESQRLW-LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR 215
++ + +W +W++ A H+T ++Q VVEFAKR+ GF +L Q+DQ+IL+K G E+ + + R
Sbjct: 276 YQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIILLKAGAMEVVLVRMCR 335
Query: 216 LTTDSSLT-FSDGMY 229
++ T F +G Y
Sbjct: 336 AYNANNHTVFFEGKY 350
>UNIPROTKB|Q98934 [details] [associations]
symbol:RORB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0030522 eggNOG:NOG324222 GeneTree:ENSGT00700000104109
HOGENOM:HOG000010200 HOVERGEN:HBG106848 CTD:6096 KO:K08533
OrthoDB:EOG4KH2TT EMBL:AADN02059739 EMBL:AADN02059740
EMBL:AADN02059741 EMBL:AADN02059742 EMBL:AADN02059743
EMBL:AADN02059744 EMBL:AADN02059745 EMBL:AADN02059746
EMBL:AADN02059747 EMBL:AADN02059748 EMBL:AADN02059749
EMBL:AADN02059750 EMBL:Y08638 IPI:IPI00597298 RefSeq:NP_990424.1
UniGene:Gga.581 HSSP:P45446 SMR:Q98934 STRING:Q98934
Ensembl:ENSGALT00000024445 GeneID:395980 KEGG:gga:395980
NextBio:20816045 Uniprot:Q98934
Length = 459
Score = 203 (76.5 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 35/61 (57%), Positives = 46/61 (75%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 31 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 90
Query: 63 E 63
+
Sbjct: 91 D 91
Score = 132 (51.5 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
LWQQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ + + R + T
Sbjct: 258 LWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNT 317
Query: 224 -FSDGMYVTRQQLEVM 238
+G Y Q + +
Sbjct: 318 VLFEGKYGGMQMFKAL 333
>UNIPROTKB|F1MWS0 [details] [associations]
symbol:RORB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0042462 "eye photoreceptor cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0045893 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0030522 GO:GO:0042462
GeneTree:ENSGT00700000104109 CTD:6096 KO:K08533 OMA:SGHTMRA
EMBL:DAAA02022913 EMBL:DAAA02022911 EMBL:DAAA02022912
IPI:IPI00709815 RefSeq:NP_001179587.1 UniGene:Bt.51697
Ensembl:ENSBTAT00000028921 GeneID:528382 KEGG:bta:528382
NextBio:20874809 Uniprot:F1MWS0
Length = 459
Score = 203 (76.5 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 35/61 (57%), Positives = 46/61 (75%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 31 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 90
Query: 63 E 63
+
Sbjct: 91 D 91
Score = 132 (51.5 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
LWQQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ + + R + T
Sbjct: 258 LWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNT 317
Query: 224 -FSDGMYVTRQQLEVM 238
+G Y Q + +
Sbjct: 318 VLFEGKYGGMQMFKAL 333
>RGD|1595785 [details] [associations]
symbol:Rorc "RAR-related orphan receptor C" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IEP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 RGD:1595785
GO:GO:0005634 GO:GO:0046872 GO:GO:0007623 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0006468 GO:GO:0033077
GO:GO:0030522 GO:GO:0048535 GO:GO:0048537 GO:GO:0072539 OMA:AFPPLYK
EMBL:AC133978 IPI:IPI00370940 Ensembl:ENSRNOT00000028292
ArrayExpress:F1LRS6 Uniprot:F1LRS6
Length = 508
Score = 195 (73.7 bits), Expect = 3.0e-27, Sum P(2) = 3.0e-27
Identities = 34/66 (51%), Positives = 48/66 (72%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q + Y C R C + R +RNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 52 KGFFRRSQQCNVAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 111
Query: 63 ERSDSE 68
+ +E
Sbjct: 112 DSLHAE 117
Score = 142 (55.0 bits), Expect = 3.0e-27, Sum P(2) = 3.0e-27
Identities = 29/75 (38%), Positives = 50/75 (66%)
Query: 157 HESQRLW-LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR 215
++ + +W +W++ A H+T ++Q VVEFAKR+ GF +L Q+DQ+IL+K G E+ + + R
Sbjct: 298 YQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIILLKAGAMEVVLVRMCR 357
Query: 216 LTTDSSLT-FSDGMY 229
++ T F +G Y
Sbjct: 358 AYNANNHTVFFEGKY 372
>UNIPROTKB|E1C5M3 [details] [associations]
symbol:RORB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042462 "eye photoreceptor
cell development" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0045893 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0030522 GeneTree:ENSGT00700000104109
OMA:SGHTMRA EMBL:AADN02059739 EMBL:AADN02059740 EMBL:AADN02059741
EMBL:AADN02059742 EMBL:AADN02059743 EMBL:AADN02059744
EMBL:AADN02059745 EMBL:AADN02059746 EMBL:AADN02059747
EMBL:AADN02059748 EMBL:AADN02059749 EMBL:AADN02059750
IPI:IPI00594386 Ensembl:ENSGALT00000024446 ArrayExpress:E1C5M3
Uniprot:E1C5M3
Length = 470
Score = 203 (76.5 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 35/61 (57%), Positives = 46/61 (75%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 39 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 98
Query: 63 E 63
+
Sbjct: 99 D 99
Score = 132 (51.5 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
LWQQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ + + R + T
Sbjct: 266 LWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNT 325
Query: 224 -FSDGMYVTRQQLEVM 238
+G Y Q + +
Sbjct: 326 VLFEGKYGGMQMFKAL 341
>UNIPROTKB|F1PET8 [details] [associations]
symbol:RORB "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0042462 "eye
photoreceptor cell development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003079 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0045893 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
GO:GO:0042462 GeneTree:ENSGT00700000104109 OMA:SGHTMRA
EMBL:AAEX03000553 EMBL:AAEX03000554 Ensembl:ENSCAFT00000036494
Uniprot:F1PET8
Length = 470
Score = 203 (76.5 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 35/61 (57%), Positives = 46/61 (75%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 42 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 101
Query: 63 E 63
+
Sbjct: 102 D 102
Score = 132 (51.5 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
LWQQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ + + R + T
Sbjct: 269 LWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNT 328
Query: 224 -FSDGMYVTRQQLEVM 238
+G Y Q + +
Sbjct: 329 VLFEGKYGGMQMFKAL 344
>UNIPROTKB|Q92753 [details] [associations]
symbol:RORB "Nuclear receptor ROR-beta" species:9606 "Homo
sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007601 "visual perception" evidence=IEA] [GO:0042462 "eye
photoreceptor cell development" evidence=ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0030522 "intracellular receptor mediated
signaling pathway" evidence=TAS] Reactome:REACT_71
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003079 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0045893 GO:GO:0005654 GO:GO:0007420
GO:GO:0046872 GO:GO:0007623 GO:GO:0007601 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0006367 GO:GO:0042462
eggNOG:NOG324222 GO:GO:0008502 HOGENOM:HOG000010200
HOVERGEN:HBG106848 EMBL:Y08639 EMBL:BX647070 EMBL:AL137018
IPI:IPI00023259 IPI:IPI00827604 RefSeq:NP_008845.2
UniGene:Hs.494178 ProteinModelPortal:Q92753 SMR:Q92753
STRING:Q92753 PhosphoSite:Q92753 DMDM:124028630 PRIDE:Q92753
DNASU:6096 Ensembl:ENST00000376896 Ensembl:ENST00000396204
GeneID:6096 KEGG:hsa:6096 UCSC:uc004aji.3 CTD:6096
GeneCards:GC09P077112 HGNC:HGNC:10259 HPA:HPA008393 MIM:601972
neXtProt:NX_Q92753 PharmGKB:PA34631 InParanoid:Q92753 KO:K08533
OMA:SGHTMRA OrthoDB:EOG4KH2TT ChiTaRS:RORB GenomeRNAi:6096
NextBio:23713 ArrayExpress:Q92753 Bgee:Q92753 CleanEx:HS_RORB
Genevestigator:Q92753 GermOnline:ENSG00000198963 Uniprot:Q92753
Length = 470
Score = 203 (76.5 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 35/61 (57%), Positives = 46/61 (75%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 42 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 101
Query: 63 E 63
+
Sbjct: 102 D 102
Score = 132 (51.5 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
LWQQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ + + R + T
Sbjct: 269 LWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNT 328
Query: 224 -FSDGMYVTRQQLEVM 238
+G Y Q + +
Sbjct: 329 VLFEGKYGGMQMFKAL 344
>MGI|MGI:1343464 [details] [associations]
symbol:Rorb "RAR-related orphan receptor beta" species:10090
"Mus musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO;IDA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IC] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007601
"visual perception" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008502 "melatonin receptor activity"
evidence=ISO] [GO:0030522 "intracellular receptor mediated
signaling pathway" evidence=IEA] [GO:0042462 "eye photoreceptor
cell development" evidence=IMP] [GO:0043401 "steroid hormone
mediated signaling pathway" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0050896 "response
to stimulus" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003079 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 MGI:MGI:1343464 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0046872 GO:GO:0007623
GO:GO:0007601 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0003700 GO:GO:0030522 GO:GO:0042462 eggNOG:NOG324222
GeneTree:ENSGT00700000104109 GO:GO:0008502 HOGENOM:HOG000010200
HOVERGEN:HBG106848 CTD:6096 KO:K08533 OMA:SGHTMRA OrthoDB:EOG4KH2TT
EMBL:BC024842 EMBL:BC058269 EMBL:DQ779923 EMBL:DQ779924
EMBL:AB258405 IPI:IPI00153341 IPI:IPI00788322 RefSeq:NP_001036819.1
RefSeq:NP_666207.3 UniGene:Mm.276747 ProteinModelPortal:Q8R1B8
SMR:Q8R1B8 STRING:Q8R1B8 PhosphoSite:Q8R1B8 PRIDE:Q8R1B8
Ensembl:ENSMUST00000040153 Ensembl:ENSMUST00000112828
Ensembl:ENSMUST00000112832 GeneID:225998 KEGG:mmu:225998
UCSC:uc008gyc.1 UCSC:uc008gyd.1 NextBio:377911 Bgee:Q8R1B8
CleanEx:MM_RORB Genevestigator:Q8R1B8 GermOnline:ENSMUSG00000036192
Uniprot:Q8R1B8
Length = 470
Score = 203 (76.5 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 35/61 (57%), Positives = 46/61 (75%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 42 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 101
Query: 63 E 63
+
Sbjct: 102 D 102
Score = 132 (51.5 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
LWQQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ + + R + T
Sbjct: 269 LWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNT 328
Query: 224 -FSDGMYVTRQQLEVM 238
+G Y Q + +
Sbjct: 329 VLFEGKYGGMQMFKAL 344
>RGD|1306778 [details] [associations]
symbol:Rorb "RAR-related orphan receptor B" species:10116
"Rattus norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO;ISS;IDA] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007420 "brain development" evidence=IEP]
[GO:0007601 "visual perception" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEP] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008502 "melatonin receptor activity"
evidence=IDA] [GO:0009725 "response to hormone stimulus"
evidence=IEP] [GO:0042462 "eye photoreceptor cell development"
evidence=IEA;ISO;ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA;ISO;ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA;ISO;ISS]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003079 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 RGD:1306778 GO:GO:0005634 GO:GO:0045893 GO:GO:0007420
GO:GO:0046872 GO:GO:0007623 GO:GO:0007601 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0009725
GO:GO:0030522 GO:GO:0042462 eggNOG:NOG324222 GO:GO:0008502 PDB:1K4W
PDB:1N4H PDB:1NQ7 PDBsum:1K4W PDBsum:1N4H PDBsum:1NQ7
HOGENOM:HOG000010200 HOVERGEN:HBG106848 OrthoDB:EOG4KH2TT
EMBL:L14610 IPI:IPI00208302 IPI:IPI00829487 PIR:I65219
UniGene:Rn.231652 ProteinModelPortal:P45446 SMR:P45446
STRING:P45446 PhosphoSite:P45446 UCSC:RGD:1306778 InParanoid:P45446
EvolutionaryTrace:P45446 ArrayExpress:P45446 Genevestigator:P45446
GermOnline:ENSRNOG00000013413 Uniprot:P45446
Length = 470
Score = 203 (76.5 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 35/61 (57%), Positives = 46/61 (75%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 42 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 101
Query: 63 E 63
+
Sbjct: 102 D 102
Score = 132 (51.5 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
LWQQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ + + R + T
Sbjct: 269 LWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNT 328
Query: 224 -FSDGMYVTRQQLEVM 238
+G Y Q + +
Sbjct: 329 VLFEGKYGGMQMFKAL 344
>UNIPROTKB|P45446 [details] [associations]
symbol:Rorb "Nuclear receptor ROR-beta" species:10116
"Rattus norvegicus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003079 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 RGD:1306778 GO:GO:0005634 GO:GO:0045893 GO:GO:0007420
GO:GO:0046872 GO:GO:0007623 GO:GO:0007601 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0009725
GO:GO:0030522 GO:GO:0042462 eggNOG:NOG324222 GO:GO:0008502 PDB:1K4W
PDB:1N4H PDB:1NQ7 PDBsum:1K4W PDBsum:1N4H PDBsum:1NQ7
HOGENOM:HOG000010200 HOVERGEN:HBG106848 OrthoDB:EOG4KH2TT
EMBL:L14610 IPI:IPI00208302 IPI:IPI00829487 PIR:I65219
UniGene:Rn.231652 ProteinModelPortal:P45446 SMR:P45446
STRING:P45446 PhosphoSite:P45446 UCSC:RGD:1306778 InParanoid:P45446
EvolutionaryTrace:P45446 ArrayExpress:P45446 Genevestigator:P45446
GermOnline:ENSRNOG00000013413 Uniprot:P45446
Length = 470
Score = 203 (76.5 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 35/61 (57%), Positives = 46/61 (75%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 42 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 101
Query: 63 E 63
+
Sbjct: 102 D 102
Score = 132 (51.5 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
LWQQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ + + R + T
Sbjct: 269 LWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNT 328
Query: 224 -FSDGMYVTRQQLEVM 238
+G Y Q + +
Sbjct: 329 VLFEGKYGGMQMFKAL 344
>ZFIN|ZDB-GENE-060306-2 [details] [associations]
symbol:roraa "RAR-related orphan receptor A, paralog
a" species:7955 "Danio rerio" [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0043401
"steroid hormone mediated signaling pathway" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-060306-2
GO:GO:0005634 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0030522 GeneTree:ENSGT00700000104109
EMBL:CABZ01027882 EMBL:CABZ01027883 EMBL:CABZ01027884
EMBL:CABZ01027885 EMBL:CU468885 IPI:IPI00995582
ProteinModelPortal:F1QLY4 Ensembl:ENSDART00000121449 Bgee:F1QLY4
Uniprot:F1QLY4
Length = 516
Score = 206 (77.6 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
Identities = 44/103 (42%), Positives = 60/103 (58%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R +RNRCQ+CR +KCLAVGMSRD+V++GR+ K+ R
Sbjct: 87 KGFFRRSQQSNAAYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQR 146
Query: 63 ERSDSETGSTRVSTTGAE---PPSSLETAGPVQSLPSS--TEL 100
+ +E R+ + P E P L ++ TEL
Sbjct: 147 DSLYAEVQKHRLQQQQRDHQQQPGEAEPLTPTYGLSTNGLTEL 189
Score = 130 (50.8 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL-WIGYVSRLTTDSSL 222
+WQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ ++ ++
Sbjct: 312 MWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFVRMCRAFDPQNNT 371
Query: 223 TFSDGMY 229
+ DG Y
Sbjct: 372 VYFDGKY 378
>ZFIN|ZDB-GENE-061204-2 [details] [associations]
symbol:rorb "RAR-related orphan receptor B"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-061204-2
GO:GO:0005634 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0030522 GeneTree:ENSGT00700000104109
OMA:SGHTMRA EMBL:BX537293 EMBL:CU929335 IPI:IPI00489649
Ensembl:ENSDART00000089748 Bgee:F1R6M2 Uniprot:F1R6M2
Length = 466
Score = 203 (76.5 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 35/61 (57%), Positives = 46/61 (75%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 31 KGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 90
Query: 63 E 63
+
Sbjct: 91 D 91
Score = 131 (51.2 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
LWQQ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+
Sbjct: 264 LWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEV 308
>UNIPROTKB|P51449 [details] [associations]
symbol:RORC "Nuclear receptor ROR-gamma" species:9606 "Homo
sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0033077 "T
cell differentiation in thymus" evidence=IEA] [GO:0048535 "lymph
node development" evidence=IEA] [GO:0048537 "mucosal-associated
lymphoid tissue development" evidence=IEA] [GO:0072539 "T-helper 17
cell differentiation" evidence=IEA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0030522 "intracellular receptor mediated signaling pathway"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005654
GO:GO:0046872 GO:GO:0003677 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0006468 GO:GO:0033077 GO:GO:0006367
GO:GO:0048535 EMBL:AL589765 PDB:3KYT PDB:3L0J PDB:3L0L PDBsum:3KYT
PDBsum:3L0J PDBsum:3L0L HOVERGEN:HBG106848 EMBL:U16997
EMBL:AL834219 EMBL:BC031554 IPI:IPI00216710 IPI:IPI00418178
PIR:JC2494 RefSeq:NP_001001523.1 RefSeq:NP_005051.2
UniGene:Hs.256022 UniGene:Hs.607993 PDB:3B0W PDBsum:3B0W
ProteinModelPortal:P51449 SMR:P51449 IntAct:P51449 STRING:P51449
PhosphoSite:P51449 DMDM:49066040 PRIDE:P51449 DNASU:6097
Ensembl:ENST00000318247 Ensembl:ENST00000356728 GeneID:6097
KEGG:hsa:6097 UCSC:uc001ezh.3 CTD:6097 GeneCards:GC01M151778
HGNC:HGNC:10260 MIM:602943 neXtProt:NX_P51449 PharmGKB:PA34632
eggNOG:NOG317095 KO:K08534 ChEMBL:CHEMBL1741186
EvolutionaryTrace:P51449 GenomeRNAi:6097 NextBio:23717
ArrayExpress:P51449 Bgee:P51449 CleanEx:HS_RORC
Genevestigator:P51449 GermOnline:ENSG00000143365 GO:GO:0048537
GO:GO:0072539 Uniprot:P51449
Length = 518
Score = 187 (70.9 bits), Expect = 9.3e-27, Sum P(2) = 9.3e-27
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y C R C + R +RNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 52 KGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 111
Query: 63 ERSDSE 68
+ +E
Sbjct: 112 DSLHAE 117
Score = 146 (56.5 bits), Expect = 9.3e-27, Sum P(2) = 9.3e-27
Identities = 28/75 (37%), Positives = 49/75 (65%)
Query: 157 HESQRLW-LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR 215
++ + +W +W++ A H+T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ + + R
Sbjct: 308 YQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCR 367
Query: 216 L-TTDSSLTFSDGMY 229
D+ F +G Y
Sbjct: 368 AYNADNRTVFFEGKY 382
>UNIPROTKB|F1SGE6 [details] [associations]
symbol:RARG "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070384 "Harderian gland development" evidence=IEA]
[GO:0061037 "negative regulation of cartilage development"
evidence=IEA] [GO:0060740 "prostate gland epithelium morphogenesis"
evidence=IEA] [GO:0060534 "trachea cartilage development"
evidence=IEA] [GO:0048048 "embryonic eye morphogenesis"
evidence=IEA] [GO:0046965 "retinoid X receptor binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043065
"positive regulation of apoptotic process" evidence=IEA]
[GO:0035264 "multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0032526 "response to retinoic acid" evidence=IEA] [GO:0032331
"negative regulation of chondrocyte differentiation" evidence=IEA]
[GO:0009952 "anterior/posterior pattern specification"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0003430 "growth plate cartilage
chondrocyte growth" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003708 "retinoic
acid receptor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0008285
GO:GO:0009952 GO:GO:0046872 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0005667 GO:GO:0000122 GO:GO:0043065
GO:GO:0032526 GO:GO:0035264 GO:GO:0035116 GO:GO:0048048
GO:GO:0060740 GO:GO:0032331 GO:GO:0003708 CTD:5916 GO:GO:0070384
GO:GO:0061037 GeneTree:ENSGT00680000099662 KO:K08529 GO:GO:0003430
GO:GO:0060534 EMBL:CU550678 RefSeq:XP_001924421.3 UniGene:Ssc.97565
Ensembl:ENSSSCT00000000277 GeneID:397221 KEGG:ssc:397221
OMA:TFNSMRS Uniprot:F1SGE6
Length = 447
Score = 193 (73.0 bits), Expect = 9.5e-27, Sum P(2) = 9.5e-27
Identities = 39/98 (39%), Positives = 58/98 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 100 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKE 159
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTEL 100
+ + S +S E + + A ++ PS +L
Sbjct: 160 VKEEGSLDSYELSPQLEELITKVSKAHQ-ETFPSLCQL 196
Score = 137 (53.3 bits), Expect = 9.5e-27, Sum P(2) = 9.5e-27
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDS 220
L LW +F+ T + ++VEFAKR+PGF LS DQ+ L+K + L + +R T +
Sbjct: 213 LGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQ 272
Query: 221 -SLTFSDGMYVTRQQL 235
++TFSDG+ + R Q+
Sbjct: 273 DTMTFSDGLTLNRTQM 288
>UNIPROTKB|F1NQH5 [details] [associations]
symbol:RARB "Retinoic acid receptor beta" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0001657 "ureteric bud
development" evidence=IEA] [GO:0003417 "growth plate cartilage
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0021756 "striatum development" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IEA] [GO:0032331 "negative
regulation of chondrocyte differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035264 "multicellular organism growth" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0048048
"embryonic eye morphogenesis" evidence=IEA] [GO:0048566 "embryonic
digestive tract development" evidence=IEA] [GO:0055012 "ventricular
cardiac muscle cell differentiation" evidence=IEA] [GO:0061037
"negative regulation of cartilage development" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003078 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0008285 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0000122
GO:GO:0043065 GO:GO:0032331 GO:GO:0003708 GO:GO:0061037
GeneTree:ENSGT00680000099662 EMBL:AADN02001127 EMBL:AADN02001120
EMBL:AADN02001121 EMBL:AADN02001122 EMBL:AADN02001123
EMBL:AADN02001124 EMBL:AADN02001125 EMBL:AADN02001126
IPI:IPI01017311 Ensembl:ENSGALT00000018429
Ensembl:ENSGALT00000037746 Uniprot:F1NQH5
Length = 359
Score = 190 (71.9 bits), Expect = 9.6e-27, Sum P(2) = 9.6e-27
Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 49 KGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 107
Query: 63 ERSDSET 69
E + E+
Sbjct: 108 EPTKQES 114
Score = 135 (52.6 bits), Expect = 9.6e-27, Sum P(2) = 9.6e-27
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS 220
L LW +F+ T + ++VEFAKR+PGF L+ DQ+ L+K ++ I + +R T +
Sbjct: 162 LGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQ 221
Query: 221 -SLTFSDGMYVTRQQL 235
++TFSDG+ + R Q+
Sbjct: 222 DTMTFSDGLTLNRTQM 237
Score = 37 (18.1 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 64 RSDSETGSTRVSTTGAEPPSSL 85
RS S G+ RV T E P S+
Sbjct: 325 RSISAKGAERVITLKMEIPGSM 346
>UNIPROTKB|F1N7B3 [details] [associations]
symbol:RORC "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072539 "T-helper 17 cell differentiation"
evidence=IEA] [GO:0048537 "mucosal-associated lymphoid tissue
development" evidence=IEA] [GO:0048535 "lymph node development"
evidence=IEA] [GO:0033077 "T cell differentiation in thymus"
evidence=IEA] [GO:0006468 "protein phosphorylation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003079 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0006468
GO:GO:0033077 GO:GO:0030522 GO:GO:0048535
GeneTree:ENSGT00700000104109 GO:GO:0048537 GO:GO:0072539
OMA:AFPPLYK EMBL:DAAA02007247 IPI:IPI00687924 UniGene:Bt.49360
Ensembl:ENSBTAT00000044130 Uniprot:F1N7B3
Length = 506
Score = 195 (73.7 bits), Expect = 9.9e-27, Sum P(2) = 9.9e-27
Identities = 34/66 (51%), Positives = 48/66 (72%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q + Y C R C + R +RNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 52 KGFFRRSQQCNVAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 111
Query: 63 ERSDSE 68
+ +E
Sbjct: 112 DSLHAE 117
Score = 137 (53.3 bits), Expect = 9.9e-27, Sum P(2) = 9.9e-27
Identities = 27/73 (36%), Positives = 47/73 (64%)
Query: 157 HESQRLW-LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR 215
++ + +W +W + A +T ++Q VVEFAKR+PGF +L Q+DQ++L+K G E+ + + R
Sbjct: 308 YQRKSMWEMWGRCAHRLTEAIQYVVEFAKRLPGFMELCQNDQIVLLKAGAMEVVLVRMCR 367
Query: 216 L-TTDSSLTFSDG 227
D+ F +G
Sbjct: 368 AYNADNDTVFFEG 380
>UNIPROTKB|P13631 [details] [associations]
symbol:RARG "Retinoic acid receptor gamma" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003430 "growth plate cartilage chondrocyte growth"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0009952 "anterior/posterior
pattern specification" evidence=IEA] [GO:0031641 "regulation of
myelination" evidence=IEA] [GO:0032331 "negative regulation of
chondrocyte differentiation" evidence=IEA] [GO:0035264
"multicellular organism growth" evidence=IEA] [GO:0060534 "trachea
cartilage development" evidence=IEA] [GO:0060740 "prostate gland
epithelium morphogenesis" evidence=IEA] [GO:0061037 "negative
regulation of cartilage development" evidence=IEA] [GO:0070384
"Harderian gland development" evidence=IEA] [GO:0071300 "cellular
response to retinoic acid" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0032526 "response
to retinoic acid" evidence=IDA] [GO:0016021 "integral to membrane"
evidence=NAS] [GO:0048384 "retinoic acid receptor signaling
pathway" evidence=IDA] [GO:0060070 "canonical Wnt receptor
signaling pathway" evidence=TAS] [GO:0008361 "regulation of cell
size" evidence=TAS] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005667 "transcription factor complex"
evidence=ISS] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISS] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=ISS] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISS] [GO:0043068 "positive regulation
of programmed cell death" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0046965 "retinoid X receptor binding"
evidence=ISS] [GO:0048048 "embryonic eye morphogenesis"
evidence=ISS] Reactome:REACT_71 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0016021
GO:GO:0008285 GO:GO:0009952 GO:GO:0046872 GO:GO:0003677
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 EMBL:CH471054
GO:GO:0003700 GO:GO:0008361 Pathway_Interaction_DB:rxr_vdr_pathway
GO:GO:0005667 GO:GO:0000122 GO:GO:0043065 GO:GO:0032526
GO:GO:0035264 GO:GO:0035116
Pathway_Interaction_DB:retinoic_acid_pathway DrugBank:DB00755
GO:GO:0048384 GO:GO:0048048 DrugBank:DB00459 GO:GO:0060740
GO:GO:0006367 GO:GO:0060070 GO:GO:0046965 GO:GO:0032331
HOVERGEN:HBG005606 GO:GO:0003708 EMBL:AC021072 CTD:5916
GO:GO:0070384 GO:GO:0061037 DrugBank:DB00523 DrugBank:DB00926
eggNOG:NOG297448 OrthoDB:EOG4F7NK7 DrugBank:DB00210
DrugBank:DB00799 EMBL:M24857 EMBL:M57707 EMBL:M38258 EMBL:AK297023
EMBL:AK297277 EMBL:AK316259 EMBL:AC073573 EMBL:BC093727
EMBL:BC093729 EMBL:M32074 EMBL:X57280 EMBL:AJ250835 EMBL:AY013703
EMBL:AY013704 IPI:IPI00427809 IPI:IPI00465344 IPI:IPI00788710
PIR:A33903 PIR:C35991 RefSeq:NP_000957.1 RefSeq:NP_001036193.1
RefSeq:NP_001230659.1 RefSeq:NP_001230661.1 UniGene:Hs.1497
UniGene:Hs.733399 PDB:1EXA PDB:1EXX PDB:1FCX PDB:1FCY PDB:1FCZ
PDB:1FD0 PDB:2LBD PDB:3LBD PDB:4LBD PDBsum:1EXA PDBsum:1EXX
PDBsum:1FCX PDBsum:1FCY PDBsum:1FCZ PDBsum:1FD0 PDBsum:2LBD
PDBsum:3LBD PDBsum:4LBD ProteinModelPortal:P13631 SMR:P13631
IntAct:P13631 STRING:P13631 PhosphoSite:P13631 DMDM:133498
PaxDb:P13631 PRIDE:P13631 DNASU:5916 Ensembl:ENST00000327550
Ensembl:ENST00000338561 Ensembl:ENST00000394426
Ensembl:ENST00000425354 Ensembl:ENST00000543726 GeneID:5916
KEGG:hsa:5916 UCSC:uc001sce.3 GeneCards:GC12M053604
H-InvDB:HIX0129677 HGNC:HGNC:9866 MIM:180190 neXtProt:NX_P13631
PharmGKB:PA34227 InParanoid:P13631 KO:K08529 OMA:RSPQPDQ
PhylomeDB:P13631 BindingDB:P13631 ChEMBL:CHEMBL2003
EvolutionaryTrace:P13631 GenomeRNAi:5916 NextBio:23030
ArrayExpress:P13631 Bgee:P13631 CleanEx:HS_RARG
Genevestigator:P13631 GermOnline:ENSG00000172819 GO:GO:0003430
GO:GO:0060534 Uniprot:P13631
Length = 454
Score = 193 (73.0 bits), Expect = 1.0e-26, Sum P(2) = 1.0e-26
Identities = 39/98 (39%), Positives = 58/98 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKE 170
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTEL 100
+ + S +S E + + A ++ PS +L
Sbjct: 171 VKEEGSPDSYELSPQLEELITKVSKAHQ-ETFPSLCQL 207
Score = 137 (53.3 bits), Expect = 1.0e-26, Sum P(2) = 1.0e-26
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDS 220
L LW +F+ T + ++VEFAKR+PGF LS DQ+ L+K + L + +R T +
Sbjct: 224 LGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQ 283
Query: 221 -SLTFSDGMYVTRQQL 235
++TFSDG+ + R Q+
Sbjct: 284 DTMTFSDGLTLNRTQM 299
>UNIPROTKB|Q08DD4 [details] [associations]
symbol:RARG "RARG protein" species:9913 "Bos taurus"
[GO:0070384 "Harderian gland development" evidence=IEA] [GO:0061037
"negative regulation of cartilage development" evidence=IEA]
[GO:0060740 "prostate gland epithelium morphogenesis" evidence=IEA]
[GO:0060534 "trachea cartilage development" evidence=IEA]
[GO:0048048 "embryonic eye morphogenesis" evidence=IEA] [GO:0046965
"retinoid X receptor binding" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0032526 "response to retinoic acid" evidence=IEA]
[GO:0032331 "negative regulation of chondrocyte differentiation"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0008285 "negative regulation of
cell proliferation" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0003430 "growth plate cartilage
chondrocyte growth" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003708 "retinoic
acid receptor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0008285
GO:GO:0009952 GO:GO:0046872 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0005667 GO:GO:0000122 GO:GO:0043065
GO:GO:0032526 GO:GO:0035264 GO:GO:0035116 GO:GO:0048048
GO:GO:0060740 GO:GO:0032331 HOVERGEN:HBG005606 GO:GO:0003708
CTD:5916 GO:GO:0070384 GO:GO:0061037 eggNOG:NOG297448
GeneTree:ENSGT00680000099662 HOGENOM:HOG000010312 OrthoDB:EOG4F7NK7
KO:K08529 OMA:RSPQPDQ GO:GO:0003430 GO:GO:0060534 EMBL:DAAA02012865
EMBL:BC123809 IPI:IPI00707092 RefSeq:NP_001124228.1
UniGene:Bt.53782 SMR:Q08DD4 STRING:Q08DD4
Ensembl:ENSBTAT00000009984 GeneID:540425 KEGG:bta:540425
InParanoid:Q08DD4 NextBio:20878630 Uniprot:Q08DD4
Length = 458
Score = 193 (73.0 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 39/98 (39%), Positives = 58/98 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKE 170
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTEL 100
+ + S +S E + + A ++ PS +L
Sbjct: 171 VKEEGSLDSYELSPQLEELITKVSKAHQ-ETFPSLCQL 207
Score = 137 (53.3 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDS 220
L LW +F+ T + ++VEFAKR+PGF LS DQ+ L+K + L + +R T +
Sbjct: 224 LGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQ 283
Query: 221 -SLTFSDGMYVTRQQL 235
++TFSDG+ + R Q+
Sbjct: 284 DTMTFSDGLTLNRTQM 299
>UNIPROTKB|F1PN60 [details] [associations]
symbol:RARG "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003708 "retinoic acid receptor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003708 CTD:5916
GeneTree:ENSGT00680000099662 KO:K08529 OMA:RSPQPDQ
EMBL:AAEX03014990 EMBL:AAEX03014987 EMBL:AAEX03014988
EMBL:AAEX03014989 RefSeq:XP_849260.2 Ensembl:ENSCAFT00000011309
GeneID:486508 KEGG:cfa:486508 Uniprot:F1PN60
Length = 458
Score = 193 (73.0 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 39/98 (39%), Positives = 58/98 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKE 170
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTEL 100
+ + S +S E + + A ++ PS +L
Sbjct: 171 VKEEGSLDSYELSPQLEELITKVSKAHQ-ETFPSLCQL 207
Score = 137 (53.3 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDS 220
L LW +F+ T + ++VEFAKR+PGF LS DQ+ L+K + L + +R T +
Sbjct: 224 LGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQ 283
Query: 221 -SLTFSDGMYVTRQQL 235
++TFSDG+ + R Q+
Sbjct: 284 DTMTFSDGLTLNRTQM 299
>MGI|MGI:97858 [details] [associations]
symbol:Rarg "retinoic acid receptor, gamma" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0002063 "chondrocyte
development" evidence=IMP] [GO:0003417 "growth plate cartilage
development" evidence=IGI] [GO:0003430 "growth plate cartilage
chondrocyte growth" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IC;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0003708 "retinoic acid
receptor activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005667
"transcription factor complex" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IGI] [GO:0009952
"anterior/posterior pattern specification" evidence=IGI;IMP]
[GO:0010468 "regulation of gene expression" evidence=IGI]
[GO:0010628 "positive regulation of gene expression" evidence=IDA]
[GO:0032331 "negative regulation of chondrocyte differentiation"
evidence=IMP] [GO:0032526 "response to retinoic acid" evidence=ISO]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IGI]
[GO:0035264 "multicellular organism growth" evidence=IGI]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IGI] [GO:0043068 "positive regulation of programmed cell
death" evidence=IGI] [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0045596 "negative regulation of cell
differentiation" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IC;IGI;IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0046965 "retinoid
X receptor binding" evidence=IMP] [GO:0048048 "embryonic eye
morphogenesis" evidence=IGI] [GO:0048384 "retinoic acid receptor
signaling pathway" evidence=ISO;IMP] [GO:0048608 "reproductive
structure development" evidence=IMP] [GO:0048732 "gland
development" evidence=IMP] [GO:0060173 "limb development"
evidence=IMP] [GO:0060348 "bone development" evidence=IMP]
[GO:0060349 "bone morphogenesis" evidence=IGI;IMP] [GO:0060429
"epithelium development" evidence=IMP] [GO:0060534 "trachea
cartilage development" evidence=IMP] [GO:0060740 "prostate gland
epithelium morphogenesis" evidence=IMP] [GO:0061037 "negative
regulation of cartilage development" evidence=IMP] [GO:0070384
"Harderian gland development" evidence=IMP] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 MGI:MGI:97858
GO:GO:0008285 GO:GO:0009952 GO:GO:0046872 GO:GO:0003677
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0003700
GO:GO:0005667 GO:GO:0000122 GO:GO:0043065 GO:GO:0032526
GO:GO:0035264 GO:GO:0035116 GO:GO:0048384 GO:GO:0048048
GO:GO:0060740 GO:GO:0046965 GO:GO:0032331 HOVERGEN:HBG005606
GO:GO:0003708 CTD:5916 GO:GO:0070384 GO:GO:0061037 eggNOG:NOG297448
GeneTree:ENSGT00680000099662 HOGENOM:HOG000010312 OrthoDB:EOG4F7NK7
KO:K08529 OMA:RSPQPDQ GO:GO:0003430 GO:GO:0060534 EMBL:X15848
EMBL:M34475 EMBL:M34476 EMBL:AK148064 EMBL:BC012923 EMBL:BC013709
EMBL:M32068 EMBL:M32069 EMBL:M32070 IPI:IPI00122863 IPI:IPI00320178
IPI:IPI00885347 PIR:B34714 PIR:S05052 RefSeq:NP_001036192.1
RefSeq:NP_035374.3 UniGene:Mm.1273 ProteinModelPortal:P18911
SMR:P18911 DIP:DIP-42822N MINT:MINT-2834553 STRING:P18911
PhosphoSite:P18911 PRIDE:P18911 Ensembl:ENSMUST00000043172
Ensembl:ENSMUST00000063339 GeneID:19411 KEGG:mmu:19411
UCSC:uc007she.1 InParanoid:P18911 BindingDB:P18911
ChEMBL:CHEMBL4177 NextBio:296533 Bgee:P18911 CleanEx:MM_RARG
Genevestigator:P18911 GermOnline:ENSMUSG00000001288 Uniprot:P18911
Length = 458
Score = 193 (73.0 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 39/98 (39%), Positives = 58/98 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 111 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKE 170
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTEL 100
+ + S +S E + + A ++ PS +L
Sbjct: 171 VKEEGSPDSYELSPQLEELITKVSKAHQ-ETFPSLCQL 207
Score = 137 (53.3 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDS 220
L LW +F+ T + ++VEFAKR+PGF LS DQ+ L+K + L + +R T +
Sbjct: 224 LGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQ 283
Query: 221 -SLTFSDGMYVTRQQL 235
++TFSDG+ + R Q+
Sbjct: 284 DTMTFSDGLTLNRTQM 299
>UNIPROTKB|E2RGP7 [details] [associations]
symbol:RORC "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0072539 "T-helper 17 cell differentiation"
evidence=IEA] [GO:0048537 "mucosal-associated lymphoid tissue
development" evidence=IEA] [GO:0048535 "lymph node development"
evidence=IEA] [GO:0033077 "T cell differentiation in thymus"
evidence=IEA] [GO:0006468 "protein phosphorylation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003079 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0006468
GO:GO:0033077 GO:GO:0030522 GO:GO:0048535
GeneTree:ENSGT00700000104109 GO:GO:0048537 GO:GO:0072539
OMA:AFPPLYK EMBL:AAEX03011059 Ensembl:ENSCAFT00000020479
Uniprot:E2RGP7
Length = 518
Score = 194 (73.4 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 34/66 (51%), Positives = 48/66 (72%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q + Y C R C + R +RNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 52 KGFFRRSQQCNVVYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 111
Query: 63 ERSDSE 68
+ +E
Sbjct: 112 DSLHAE 117
Score = 138 (53.6 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 27/75 (36%), Positives = 48/75 (64%)
Query: 157 HESQRLW-LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR 215
++ + +W +W++ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ + + R
Sbjct: 308 YQRKSMWEMWERCAHRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCR 367
Query: 216 L-TTDSSLTFSDGMY 229
D+ F +G Y
Sbjct: 368 AYNADNHTVFFEGKY 382
Score = 46 (21.3 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 45 VGMSRDSVRYGRVPKRSRERSDSETGSTRVSTTGAEPPSSLETAGP 90
+G+ + G P E + G R +G+ PSSL AGP
Sbjct: 151 IGLPDGQLPLGSSPDLP-EAAACPPGLLRAPGSGSSYPSSLAKAGP 195
>UNIPROTKB|I3L553 [details] [associations]
symbol:RORC "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072539 "T-helper 17 cell differentiation"
evidence=IEA] [GO:0048537 "mucosal-associated lymphoid tissue
development" evidence=IEA] [GO:0048535 "lymph node development"
evidence=IEA] [GO:0033077 "T cell differentiation in thymus"
evidence=IEA] [GO:0006468 "protein phosphorylation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003079 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0006468
GO:GO:0033077 GO:GO:0030522 GO:GO:0048535
GeneTree:ENSGT00700000104109 GO:GO:0048537 GO:GO:0072539
OMA:AFPPLYK EMBL:FP340554 Ensembl:ENSSSCT00000029985 Uniprot:I3L553
Length = 574
Score = 195 (73.7 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 34/66 (51%), Positives = 48/66 (72%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q + Y C R C + R +RNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 108 KGFFRRSQQCNVAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 167
Query: 63 ERSDSE 68
+ +E
Sbjct: 168 DSLHAE 173
Score = 138 (53.6 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 27/75 (36%), Positives = 48/75 (64%)
Query: 157 HESQRLW-LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR 215
++ + +W +W++ A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ + + R
Sbjct: 364 YQRKSMWEMWERCAHRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCR 423
Query: 216 L-TTDSSLTFSDGMY 229
D+ F +G Y
Sbjct: 424 AYNADNHTVFFEGKY 438
>UNIPROTKB|H7BYJ4 [details] [associations]
symbol:RORC "Nuclear receptor ROR-gamma" species:9606 "Homo
sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0030522 EMBL:AL589765 HGNC:HGNC:10260
ProteinModelPortal:H7BYJ4 SMR:H7BYJ4 Ensembl:ENST00000392697
OMA:AFPPLYK Bgee:H7BYJ4 Uniprot:H7BYJ4
Length = 572
Score = 187 (70.9 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y C R C + R +RNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 106 KGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 165
Query: 63 ERSDSE 68
+ +E
Sbjct: 166 DSLHAE 171
Score = 146 (56.5 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 28/75 (37%), Positives = 49/75 (65%)
Query: 157 HESQRLW-LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR 215
++ + +W +W++ A H+T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ + + R
Sbjct: 362 YQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCR 421
Query: 216 L-TTDSSLTFSDGMY 229
D+ F +G Y
Sbjct: 422 AYNADNRTVFFEGKY 436
>MGI|MGI:104856 [details] [associations]
symbol:Rorc "RAR-related orphan receptor gamma" species:10090
"Mus musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006468 "protein
phosphorylation" evidence=IMP] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0030154 "cell differentiation"
evidence=IMP] [GO:0030522 "intracellular receptor mediated
signaling pathway" evidence=IEA] [GO:0033077 "T cell
differentiation in thymus" evidence=IMP] [GO:0043401 "steroid
hormone mediated signaling pathway" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0046632
"alpha-beta T cell differentiation" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0048535 "lymph node
development" evidence=IMP] [GO:0048537 "mucosal-associated lymphoid
tissue development" evidence=IMP] [GO:0072539 "T-helper 17 cell
differentiation" evidence=IDA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 MGI:MGI:104856
GO:GO:0005634 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0006468 GO:GO:0033077 GO:GO:0030522
GO:GO:0048535 GeneTree:ENSGT00700000104109 HOGENOM:HOG000010200
HOVERGEN:HBG106848 CTD:6097 eggNOG:NOG317095 KO:K08534
GO:GO:0048537 GO:GO:0072539 EMBL:U43508 EMBL:AF019660 EMBL:AF019655
EMBL:AF019656 EMBL:AF019657 EMBL:AF019658 EMBL:AF019659 EMBL:U39071
EMBL:AF163668 EMBL:AJ132394 EMBL:BC014804 IPI:IPI00228543
IPI:IPI00311164 PIR:JC5375 RefSeq:NP_035411.2 UniGene:Mm.4372
ProteinModelPortal:P51450 SMR:P51450 DIP:DIP-59439N IntAct:P51450
STRING:P51450 PhosphoSite:P51450 PRIDE:P51450
Ensembl:ENSMUST00000029795 Ensembl:ENSMUST00000107292 GeneID:19885
KEGG:mmu:19885 InParanoid:P51450 OrthoDB:EOG4229JB
ChEMBL:CHEMBL1293231 NextBio:297392 Bgee:P51450 CleanEx:MM_RORC
Genevestigator:P51450 GermOnline:ENSMUSG00000028150 Uniprot:P51450
Length = 516
Score = 195 (73.7 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 34/66 (51%), Positives = 48/66 (72%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q + Y C R C + R +RNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 52 KGFFRRSQQCNVAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 111
Query: 63 ERSDSE 68
+ +E
Sbjct: 112 DSLHAE 117
Score = 136 (52.9 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 28/75 (37%), Positives = 49/75 (65%)
Query: 157 HESQRLW-LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR 215
++ + +W +W++ A H+T ++Q VVEFAKR+ GF +L Q+DQ+IL+ G E+ + + R
Sbjct: 306 YQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIILLTAGAMEVVLVRMCR 365
Query: 216 LTTDSSLT-FSDGMY 229
++ T F +G Y
Sbjct: 366 AYNANNHTVFFEGKY 380
>UNIPROTKB|D6RBI3 [details] [associations]
symbol:RARB "Retinoic acid receptor beta" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003708
HOGENOM:HOG000010312 OrthoDB:EOG4F7NK7 HGNC:HGNC:9865 EMBL:AC093416
EMBL:AC092422 EMBL:AC098477 EMBL:AC133141 EMBL:AC133797
IPI:IPI00967715 ProteinModelPortal:D6RBI3 SMR:D6RBI3
Ensembl:ENST00000383772 ArrayExpress:D6RBI3 Bgee:D6RBI3
Uniprot:D6RBI3
Length = 402
Score = 192 (72.6 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 36/66 (54%), Positives = 47/66 (71%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 167
Query: 63 ERSDSE 68
E S E
Sbjct: 168 ETSKQE 173
Score = 134 (52.2 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS 220
L LW +F+ T + ++VEFAKR+PGF L+ DQ+ L+K ++ I + +R T +
Sbjct: 222 LGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQ 281
Query: 221 -SLTFSDGMYVTRQQL 235
++TFSDG+ + R Q+
Sbjct: 282 DTMTFSDGLTLNRTQM 297
>UNIPROTKB|F1N9Q8 [details] [associations]
symbol:RARB "Retinoic acid receptor beta" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003708
GeneTree:ENSGT00680000099662 OMA:QEVFVCI EMBL:AADN02001127
EMBL:AADN02001120 EMBL:AADN02001121 EMBL:AADN02001122
EMBL:AADN02001123 EMBL:AADN02001124 EMBL:AADN02001125
EMBL:AADN02001126 IPI:IPI00821263 ProteinModelPortal:F1N9Q8
Ensembl:ENSGALT00000029066 ArrayExpress:F1N9Q8 Uniprot:F1N9Q8
Length = 415
Score = 190 (71.9 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 103 KGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 161
Query: 63 ERSDSET 69
E + E+
Sbjct: 162 EPTKQES 168
Score = 135 (52.6 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS 220
L LW +F+ T + ++VEFAKR+PGF L+ DQ+ L+K ++ I + +R T +
Sbjct: 216 LGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQ 275
Query: 221 -SLTFSDGMYVTRQQL 235
++TFSDG+ + R Q+
Sbjct: 276 DTMTFSDGLTLNRTQM 291
Score = 37 (18.1 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 64 RSDSETGSTRVSTTGAEPPSSL 85
RS S G+ RV T E P S+
Sbjct: 379 RSISAKGAERVITLKMEIPGSM 400
>UNIPROTKB|P10826 [details] [associations]
symbol:RARB "Retinoic acid receptor beta" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0001657 "ureteric bud
development" evidence=IEA] [GO:0003417 "growth plate cartilage
development" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0021756 "striatum development"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IEA] [GO:0032331
"negative regulation of chondrocyte differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035264 "multicellular organism growth" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0048048
"embryonic eye morphogenesis" evidence=IEA] [GO:0055012
"ventricular cardiac muscle cell differentiation" evidence=IEA]
[GO:0061037 "negative regulation of cartilage development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0048566
"embryonic digestive tract development" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0003677 "DNA binding" evidence=TAS]
[GO:0007165 "signal transduction" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] Reactome:REACT_71 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005737
GO:GO:0008285 GO:GO:0005654 GO:GO:0022008 GO:GO:0046872
GO:GO:0003677 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
Pathway_Interaction_DB:rxr_vdr_pathway GO:GO:0000122 GO:GO:0043065
GO:GO:0048566 GO:GO:0035264 GO:GO:0035116
Pathway_Interaction_DB:retinoic_acid_pathway GO:GO:0048048
DrugBank:DB00459 GO:GO:0006367 GO:GO:0001657 GO:GO:0021756
GO:GO:0032331 GO:GO:0003417 HOVERGEN:HBG005606 GO:GO:0003708
GO:GO:0061037 GO:GO:0055012 PDB:4DM6 PDB:4DM8 PDBsum:4DM6
PDBsum:4DM8 DrugBank:DB00523 DrugBank:DB00926 eggNOG:NOG297448
HOGENOM:HOG000010312 OrthoDB:EOG4F7NK7 DrugBank:DB00210
DrugBank:DB04942 DrugBank:DB00799 CTD:5915 KO:K08528 EMBL:X07282
EMBL:Y00291 EMBL:AF157483 EMBL:BC060794 EMBL:X56849 EMBL:X77664
EMBL:X04014 EMBL:M57445 IPI:IPI00022989 IPI:IPI00219014
IPI:IPI00745428 PIR:S02827 PIR:S49021 RefSeq:NP_000956.2
RefSeq:NP_057236.1 UniGene:Hs.654490 UniGene:Hs.733004 PDB:1HRA
PDB:1XAP PDBsum:1HRA PDBsum:1XAP ProteinModelPortal:P10826
SMR:P10826 IntAct:P10826 MINT:MINT-1180428 STRING:P10826
DMDM:17380507 PRIDE:P10826 DNASU:5915 Ensembl:ENST00000330688
Ensembl:ENST00000404969 Ensembl:ENST00000437042
Ensembl:ENST00000458646 GeneID:5915 KEGG:hsa:5915 UCSC:uc003cdi.2
GeneCards:GC03P025194 HGNC:HGNC:9865 HPA:CAB002617 HPA:HPA004174
MIM:180220 neXtProt:NX_P10826 PharmGKB:PA34226 OMA:QEVFVCI
PhylomeDB:P10826 BindingDB:P10826 ChEMBL:CHEMBL2008
EvolutionaryTrace:P10826 GenomeRNAi:5915 NextBio:23024
ArrayExpress:P10826 Bgee:P10826 CleanEx:HS_RARB
Genevestigator:P10826 GermOnline:ENSG00000077092 Uniprot:P10826
Length = 455
Score = 192 (72.6 bits), Expect = 2.7e-26, Sum P(2) = 2.7e-26
Identities = 36/66 (54%), Positives = 47/66 (71%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 167
Query: 63 ERSDSE 68
E S E
Sbjct: 168 ETSKQE 173
Score = 134 (52.2 bits), Expect = 2.7e-26, Sum P(2) = 2.7e-26
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS 220
L LW +F+ T + ++VEFAKR+PGF L+ DQ+ L+K ++ I + +R T +
Sbjct: 222 LGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQ 281
Query: 221 -SLTFSDGMYVTRQQL 235
++TFSDG+ + R Q+
Sbjct: 282 DTMTFSDGLTLNRTQM 297
Score = 37 (18.1 bits), Expect = 3.6e-16, Sum P(2) = 3.6e-16
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 64 RSDSETGSTRVSTTGAEPPSSL 85
RS S G+ RV T E P S+
Sbjct: 385 RSISAKGAERVITLKMEIPGSM 406
Score = 36 (17.7 bits), Expect = 4.6e-16, Sum P(2) = 4.6e-16
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 67 SETGSTRVSTTGAEPPSSLETAGPVQS 93
S +G+T + P SS+E +G QS
Sbjct: 426 SSSGNTAEHSPSISP-SSVENSGVSQS 451
>UNIPROTKB|E2R2A6 [details] [associations]
symbol:RARB "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0061037 "negative regulation of cartilage
development" evidence=IEA] [GO:0055012 "ventricular cardiac muscle
cell differentiation" evidence=IEA] [GO:0048566 "embryonic
digestive tract development" evidence=IEA] [GO:0048048 "embryonic
eye morphogenesis" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0032331 "negative regulation of chondrocyte
differentiation" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IEA] [GO:0021756 "striatum development" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003417
"growth plate cartilage development" evidence=IEA] [GO:0001657
"ureteric bud development" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003708 "retinoic acid receptor activity" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003078 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0008285 GO:GO:0022008
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0000122 GO:GO:0043065 GO:GO:0048566 GO:GO:0035264
GO:GO:0035116 GO:GO:0048048 GO:GO:0001657 GO:GO:0021756
GO:GO:0032331 GO:GO:0003417 GO:GO:0003708 GO:GO:0061037
GO:GO:0055012 GeneTree:ENSGT00680000099662 CTD:5915 KO:K08528
OMA:QEVFVCI EMBL:AAEX03013556 RefSeq:XP_850755.1
Ensembl:ENSCAFT00000009235 GeneID:477045 KEGG:cfa:477045
NextBio:20852594 Uniprot:E2R2A6
Length = 448
Score = 191 (72.3 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
Identities = 36/66 (54%), Positives = 47/66 (71%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 102 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 160
Query: 63 ERSDSE 68
E S E
Sbjct: 161 EPSKQE 166
Score = 134 (52.2 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS 220
L LW +F+ T + ++VEFAKR+PGF L+ DQ+ L+K ++ I + +R T +
Sbjct: 215 LGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQ 274
Query: 221 -SLTFSDGMYVTRQQL 235
++TFSDG+ + R Q+
Sbjct: 275 DTMTFSDGLTLNRTQM 290
Score = 37 (18.1 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 64 RSDSETGSTRVSTTGAEPPSSL 85
RS S G+ RV T E P S+
Sbjct: 378 RSISAKGAERVITLKMEIPGSM 399
>UNIPROTKB|P22448 [details] [associations]
symbol:RARB "Retinoic acid receptor beta" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0001657 "ureteric bud development" evidence=IEA]
[GO:0003417 "growth plate cartilage development" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0021756 "striatum development" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IEA] [GO:0032331 "negative
regulation of chondrocyte differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035264 "multicellular organism growth" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0048048
"embryonic eye morphogenesis" evidence=IEA] [GO:0048566 "embryonic
digestive tract development" evidence=IEA] [GO:0055012 "ventricular
cardiac muscle cell differentiation" evidence=IEA] [GO:0061037
"negative regulation of cartilage development" evidence=IEA]
[GO:0035108 "limb morphogenesis" evidence=IDA] [GO:0071729 "beak
morphogenesis" evidence=IDA] [GO:0032526 "response to retinoic
acid" evidence=IDA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0008285
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0000122 GO:GO:0043065 GO:GO:0032526 GO:GO:0035108
GO:GO:0032331 GO:GO:0071729 HOVERGEN:HBG005606 GO:GO:0003708
GO:GO:0061037 eggNOG:NOG297448 GeneTree:ENSGT00680000099662
HOGENOM:HOG000010312 EMBL:X56674 EMBL:X57341 EMBL:X57340
EMBL:X57339 EMBL:S75943 EMBL:X59473 EMBL:S63196 IPI:IPI00580878
IPI:IPI00589689 PIR:A43786 PIR:I51272 PIR:S13512 RefSeq:NP_990657.1
UniGene:Gga.2668 UniGene:Gga.51498 ProteinModelPortal:P22448
SMR:P22448 STRING:P22448 Ensembl:ENSGALT00000037748 GeneID:396266
KEGG:gga:396266 CTD:5915 InParanoid:P22448 KO:K08528
NextBio:20816318 ArrayExpress:P22448 Uniprot:P22448
Length = 455
Score = 190 (71.9 bits), Expect = 3.6e-26, Sum P(2) = 3.6e-26
Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 167
Query: 63 ERSDSET 69
E + E+
Sbjct: 168 EPTKQES 174
Score = 135 (52.6 bits), Expect = 3.6e-26, Sum P(2) = 3.6e-26
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS 220
L LW +F+ T + ++VEFAKR+PGF L+ DQ+ L+K ++ I + +R T +
Sbjct: 222 LGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQ 281
Query: 221 -SLTFSDGMYVTRQQL 235
++TFSDG+ + R Q+
Sbjct: 282 DTMTFSDGLTLNRTQM 297
Score = 37 (18.1 bits), Expect = 6.0e-16, Sum P(2) = 6.0e-16
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 64 RSDSETGSTRVSTTGAEPPSSL 85
RS S G+ RV T E P S+
Sbjct: 385 RSISAKGAERVITLKMEIPGSM 406
>RGD|1583230 [details] [associations]
symbol:Rarg "retinoic acid receptor, gamma" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0002063 "chondrocyte development" evidence=ISO] [GO:0003417
"growth plate cartilage development" evidence=ISO] [GO:0003430
"growth plate cartilage chondrocyte growth" evidence=IEA;ISO]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IMP] [GO:0005634 "nucleus" evidence=ISO] [GO:0005667
"transcription factor complex" evidence=IEA;ISO] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IMP] [GO:0008285 "negative regulation of
cell proliferation" evidence=IEA;ISO] [GO:0009952
"anterior/posterior pattern specification" evidence=IEA;ISO]
[GO:0010468 "regulation of gene expression" evidence=ISO]
[GO:0010628 "positive regulation of gene expression" evidence=ISO]
[GO:0031641 "regulation of myelination" evidence=IDA] [GO:0032331
"negative regulation of chondrocyte differentiation"
evidence=IEA;ISO] [GO:0032526 "response to retinoic acid"
evidence=ISO] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA;ISO] [GO:0035264 "multicellular organism growth"
evidence=IEA;ISO] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA;ISO] [GO:0043068 "positive regulation of
programmed cell death" evidence=ISO] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0045596 "negative regulation of cell
differentiation" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0046965 "retinoid X receptor binding" evidence=IEA;ISO]
[GO:0048048 "embryonic eye morphogenesis" evidence=IEA;ISO]
[GO:0048384 "retinoic acid receptor signaling pathway"
evidence=ISO;IMP] [GO:0048608 "reproductive structure development"
evidence=ISO] [GO:0048732 "gland development" evidence=ISO]
[GO:0060173 "limb development" evidence=ISO] [GO:0060348 "bone
development" evidence=ISO] [GO:0060349 "bone morphogenesis"
evidence=ISO] [GO:0060429 "epithelium development" evidence=ISO]
[GO:0060534 "trachea cartilage development" evidence=IEA;ISO]
[GO:0060740 "prostate gland epithelium morphogenesis"
evidence=IEA;ISO] [GO:0061037 "negative regulation of cartilage
development" evidence=IEA;ISO] [GO:0070384 "Harderian gland
development" evidence=IEA;ISO] [GO:0071300 "cellular response to
retinoic acid" evidence=IEP] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:1583230 GO:GO:0008285 GO:GO:0009952
GO:GO:0046872 GO:GO:0008284 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0071300 GO:GO:0045944 GO:GO:0005667 GO:GO:0000122
GO:GO:0043065 GO:GO:0035264 GO:GO:0035116 GO:GO:0048048
GO:GO:0060740 GO:GO:0032331 GO:GO:0031641 GO:GO:0003708 CTD:5916
GO:GO:0070384 GO:GO:0061037 GeneTree:ENSGT00680000099662 KO:K08529
GO:GO:0003430 GO:GO:0060534 IPI:IPI00914166 RefSeq:NP_001128722.1
UniGene:Rn.198797 Ensembl:ENSRNOT00000016801 GeneID:685072
KEGG:rno:685072 UCSC:RGD:1583230 ChEMBL:CHEMBL2630 NextBio:728895
ArrayExpress:D3ZWV0 Uniprot:D3ZWV0
Length = 485
Score = 189 (71.6 bits), Expect = 3.8e-26, Sum P(2) = 3.8e-26
Identities = 38/98 (38%), Positives = 58/98 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 138 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKE 197
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTEL 100
+ + + +S E + + A ++ PS +L
Sbjct: 198 VKEEGPPDNYELSPQLEELITKVSKAHQ-ETFPSLCQL 234
Score = 137 (53.3 bits), Expect = 3.8e-26, Sum P(2) = 3.8e-26
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDS 220
L LW +F+ T + ++VEFAKR+PGF LS DQ+ L+K + L + +R T +
Sbjct: 251 LGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQ 310
Query: 221 -SLTFSDGMYVTRQQL 235
++TFSDG+ + R Q+
Sbjct: 311 DTMTFSDGLTLNRTQM 326
>RGD|3534 [details] [associations]
symbol:Rara "retinoic acid receptor, alpha" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000900 "translation repressor activity,
nucleic acid binding" evidence=IDA] [GO:0001657 "ureteric bud
development" evidence=ISO] [GO:0001889 "liver development"
evidence=IEP] [GO:0001972 "retinoic acid binding" evidence=ISO]
[GO:0003417 "growth plate cartilage development" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0003708 "retinoic acid receptor activity"
evidence=ISO;IDA;TAS] [GO:0003713 "transcription coactivator
activity" evidence=ISO] [GO:0003714 "transcription corepressor
activity" evidence=ISO] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription factor
activity" evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0006950 "response to stress" evidence=IEP]
[GO:0007165 "signal transduction" evidence=ISO] [GO:0007281 "germ
cell development" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0007565 "female pregnancy" evidence=IEP]
[GO:0008134 "transcription factor binding" evidence=ISO;IPI]
[GO:0008144 "drug binding" evidence=IDA] [GO:0008284 "positive
regulation of cell proliferation" evidence=ISO] [GO:0008285 "negative
regulation of cell proliferation" evidence=IDA] [GO:0008584 "male
gonad development" evidence=IDA] [GO:0010628 "positive regulation of
gene expression" evidence=ISO] [GO:0010629 "negative regulation of
gene expression" evidence=ISO] [GO:0017148 "negative regulation of
translation" evidence=IDA] [GO:0019899 "enzyme binding" evidence=ISO]
[GO:0019904 "protein domain specific binding" evidence=ISO]
[GO:0021766 "hippocampus development" evidence=IEP] [GO:0030425
"dendrite" evidence=ISO;IDA] [GO:0030520 "intracellular estrogen
receptor signaling pathway" evidence=ISO] [GO:0030522 "intracellular
receptor mediated signaling pathway" evidence=ISO] [GO:0030850
"prostate gland development" evidence=IEP] [GO:0030852 "regulation of
granulocyte differentiation" evidence=ISO] [GO:0030853 "negative
regulation of granulocyte differentiation" evidence=ISO] [GO:0031490
"chromatin DNA binding" evidence=ISO] [GO:0031641 "regulation of
myelination" evidence=IDA] [GO:0032355 "response to estradiol
stimulus" evidence=IEP;ISO] [GO:0032526 "response to retinoic acid"
evidence=ISO] [GO:0032689 "negative regulation of interferon-gamma
production" evidence=ISO] [GO:0032720 "negative regulation of tumor
necrosis factor production" evidence=ISO] [GO:0032736 "positive
regulation of interleukin-13 production" evidence=ISO] [GO:0032753
"positive regulation of interleukin-4 production" evidence=ISO]
[GO:0032754 "positive regulation of interleukin-5 production"
evidence=ISO] [GO:0033189 "response to vitamin A" evidence=IEP]
[GO:0034097 "response to cytokine stimulus" evidence=IEP] [GO:0035264
"multicellular organism growth" evidence=ISO] [GO:0042981 "regulation
of apoptotic process" evidence=IDA] [GO:0043005 "neuron projection"
evidence=IDA] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0043277 "apoptotic cell clearance" evidence=ISO] [GO:0043422
"protein kinase B binding" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0044323 "retinoic acid-responsive element binding" evidence=ISO]
[GO:0045471 "response to ethanol" evidence=IDA] [GO:0045596 "negative
regulation of cell differentiation" evidence=ISO] [GO:0045630
"positive regulation of T-helper 2 cell differentiation"
evidence=ISO] [GO:0045666 "positive regulation of neuron
differentiation" evidence=IDA] [GO:0045787 "positive regulation of
cell cycle" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0045947 "negative regulation of
translational initiation" evidence=ISO] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] [GO:0048167 "regulation of synaptic
plasticity" evidence=IDA] [GO:0048384 "retinoic acid receptor
signaling pathway" evidence=ISO;IDA] [GO:0048471 "perinuclear region
of cytoplasm" evidence=IDA] [GO:0051018 "protein kinase A binding"
evidence=ISO] [GO:0051099 "positive regulation of binding"
evidence=ISO] [GO:0055012 "ventricular cardiac muscle cell
differentiation" evidence=ISO] [GO:0060010 "Sertoli cell fate
commitment" evidence=ISO] [GO:0060591 "chondroblast differentiation"
evidence=ISO] [GO:0061037 "negative regulation of cartilage
development" evidence=ISO] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=ISO] [GO:0071300 "cellular response to
retinoic acid" evidence=ISO] [GO:0071391 "cellular response to
estrogen stimulus" evidence=ISO] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 RGD:3534 GO:GO:0005634 GO:GO:0048471
GO:GO:0048167 GO:GO:0008285 GO:GO:0006950 GO:GO:0042981 GO:GO:0032355
GO:GO:0045471 GO:GO:0046872 GO:GO:0008144 GO:GO:0030425 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0034097 GO:GO:0007565 GO:GO:0008584
GO:GO:0048027 GO:GO:0045666 GO:GO:0030850 GO:GO:0033189 GO:GO:0000900
GO:GO:0031641 HOVERGEN:HBG005606 GO:GO:0003708 HSSP:P10276
HOGENOM:HOG000010312 OrthoDB:EOG4F7NK7 UniGene:Rn.91057 EMBL:AJ002940
IPI:IPI00389542 ProteinModelPortal:Q9QWT4 STRING:Q9QWT4 UCSC:RGD:3534
InParanoid:Q9QWT4 Genevestigator:Q9QWT4 Uniprot:Q9QWT4
Length = 302
Score = 189 (71.6 bits), Expect = 4.4e-26, Sum P(2) = 4.4e-26
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 92 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 150
Query: 63 ERSDSETGSTRVST 76
E E + T
Sbjct: 151 EAPKPECSESYTLT 164
Score = 123 (48.4 bits), Expect = 4.4e-26, Sum P(2) = 4.4e-26
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS-S 221
LW +F+ T + + VEFAK++PGF L+ DQ+ L+K ++ I + +R T + +
Sbjct: 207 LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDT 266
Query: 222 LTFSDGMYVTRQQL 235
+TFSDG+ + R Q+
Sbjct: 267 MTFSDGLTLNRTQM 280
>MGI|MGI:97857 [details] [associations]
symbol:Rarb "retinoic acid receptor, beta" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0001657 "ureteric bud
development" evidence=IMP] [GO:0003417 "growth plate cartilage
development" evidence=IGI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0003708 "retinoic acid receptor
activity" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0008144 "drug binding"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IGI] [GO:0021756 "striatum development" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IMP] [GO:0031641 "regulation of
myelination" evidence=ISO] [GO:0032331 "negative regulation of
chondrocyte differentiation" evidence=IMP] [GO:0032403 "protein
complex binding" evidence=ISO] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IGI] [GO:0035264 "multicellular organism
growth" evidence=IGI] [GO:0043065 "positive regulation of apoptotic
process" evidence=IGI] [GO:0043068 "positive regulation of
programmed cell death" evidence=IGI] [GO:0043401 "steroid hormone
mediated signaling pathway" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045666 "positive
regulation of neuron differentiation" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IGI;IDA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0046965 "retinoid X receptor binding"
evidence=ISO] [GO:0048048 "embryonic eye morphogenesis"
evidence=IGI] [GO:0048384 "retinoic acid receptor signaling
pathway" evidence=ISO] [GO:0048566 "embryonic digestive tract
development" evidence=ISO] [GO:0055012 "ventricular cardiac muscle
cell differentiation" evidence=IMP] [GO:0061037 "negative
regulation of cartilage development" evidence=IMP]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003078 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 MGI:MGI:97857 GO:GO:0005634 GO:GO:0008285
GO:GO:0022008 GO:GO:0046872 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0003700 GO:GO:0000122 GO:GO:0043065
GO:GO:0048566 GO:GO:0035264 GO:GO:0035116 GO:GO:0048048
GO:GO:0001657 GO:GO:0021756 GO:GO:0032331 GO:GO:0003417
HOVERGEN:HBG005606 GO:GO:0003708 GO:GO:0061037 PDB:1XDK PDBsum:1XDK
GO:GO:0055012 eggNOG:NOG297448 HOGENOM:HOG000010312
OrthoDB:EOG4F7NK7 CTD:5915 KO:K08528 OMA:QEVFVCI EMBL:X56574
EMBL:X56569 EMBL:X56573 EMBL:S56660 EMBL:S92180 IPI:IPI00130386
IPI:IPI00230346 IPI:IPI00230347 IPI:IPI00230348 PIR:S05051
RefSeq:NP_035373.1 UniGene:Mm.259318 ProteinModelPortal:P22605
SMR:P22605 IntAct:P22605 STRING:P22605 PRIDE:P22605
Ensembl:ENSMUST00000063750 GeneID:218772 KEGG:mmu:218772
UCSC:uc007xvc.1 InParanoid:P22605 BindingDB:P22605
ChEMBL:CHEMBL3266 EvolutionaryTrace:P22605 NextBio:376409
Bgee:P22605 CleanEx:MM_RARB Genevestigator:P22605
GermOnline:ENSMUSG00000017491 Uniprot:P22605
Length = 482
Score = 191 (72.3 bits), Expect = 4.6e-26, Sum P(2) = 4.6e-26
Identities = 36/66 (54%), Positives = 47/66 (71%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 136 KGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 194
Query: 63 ERSDSE 68
E S E
Sbjct: 195 EPSKQE 200
Score = 134 (52.2 bits), Expect = 4.6e-26, Sum P(2) = 4.6e-26
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS 220
L LW +F+ T + ++VEFAKR+PGF L+ DQ+ L+K ++ I + +R T +
Sbjct: 249 LGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQ 308
Query: 221 -SLTFSDGMYVTRQQL 235
++TFSDG+ + R Q+
Sbjct: 309 DTMTFSDGLTLNRTQM 324
Score = 37 (18.1 bits), Expect = 6.0e-16, Sum P(2) = 6.0e-16
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 64 RSDSETGSTRVSTTGAEPPSSL 85
RS S G+ RV T E P S+
Sbjct: 412 RSISAKGAERVITLKMEIPGSM 433
>ZFIN|ZDB-GENE-980526-284 [details] [associations]
symbol:raraa "retinoic acid receptor, alpha a"
species:7955 "Danio rerio" [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0048384 "retinoic acid receptor signaling pathway"
evidence=IEA;IDA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA;IDA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0032526
"response to retinoic acid" evidence=IDA] [GO:0021575 "hindbrain
morphogenesis" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-980526-284 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0032526
GO:GO:0021575 HOVERGEN:HBG005606 GO:GO:0003708 EMBL:S74155
EMBL:L03398 EMBL:BC092692 IPI:IPI00505878 PIR:I51256
RefSeq:NP_571481.2 UniGene:Dr.193 HSSP:P10276
ProteinModelPortal:Q90271 SMR:Q90271 STRING:Q90271
Ensembl:ENSDART00000079336 GeneID:30680 KEGG:dre:30680 CTD:30680
eggNOG:NOG297448 GeneTree:ENSGT00680000099662 HOGENOM:HOG000010312
InParanoid:Q90271 KO:K08527 OMA:RTENVCI OrthoDB:EOG4F7NK7
NextBio:20807033 ArrayExpress:Q90271 Bgee:Q90271 Uniprot:Q90271
Length = 444
Score = 195 (73.7 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C R+ C++ ++ RNRCQYCR +KCL VGMS++SVR R K+
Sbjct: 96 KGFFRRSIQKNMVYTCHREKNCIINKVTRNRCQYCRLQKCLEVGMSKESVRNDRNKKKKE 155
Query: 63 ERSDSETGSTRVS 75
E+ T + +S
Sbjct: 156 EKKPECTENYTLS 168
Score = 123 (48.4 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS-S 221
LW +F+ T + + VEFAK++PGF L+ DQ+ L+K ++ I + +R T + +
Sbjct: 211 LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDT 270
Query: 222 LTFSDGMYVTRQQL 235
+TFSDG+ + R Q+
Sbjct: 271 MTFSDGLTLNRTQM 284
>ZFIN|ZDB-GENE-980526-72 [details] [associations]
symbol:rarab "retinoic acid receptor, alpha b"
species:7955 "Danio rerio" [GO:0048384 "retinoic acid receptor
signaling pathway" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0003708
"retinoic acid receptor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0033339 "pectoral fin development" evidence=IDA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-980526-72 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003708
GeneTree:ENSGT00680000099662 EMBL:BX537121 EMBL:CR392003
IPI:IPI00993231 Ensembl:ENSDART00000126022 Uniprot:E7EZ95
Length = 460
Score = 190 (71.9 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 40/98 (40%), Positives = 56/98 (57%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C R+ C++ ++ RNRCQYCR +KCL VGMS++SVR R KR +
Sbjct: 106 KGFFRRSIQKNMVYTCHREKSCIINKVTRNRCQYCRLQKCLEVGMSKESVRNDR-NKRKK 164
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTEL 100
+ E V + E ++ PS +L
Sbjct: 165 DDKKQECLENYVLSPDTEKMIEQVRKAHQETFPSLCQL 202
Score = 127 (49.8 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS-S 221
LW +F+ T + + VEFAK++PGF L+ DQ+ L+K ++ I + +R T D +
Sbjct: 221 LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQDT 280
Query: 222 LTFSDGMYVTRQQL 235
+TFSDG+ + R Q+
Sbjct: 281 MTFSDGLTLNRTQM 294
>WB|WBGene00003622 [details] [associations]
symbol:nhr-23 species:6239 "Caenorhabditis elegans"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0043652 "engulfment of apoptotic cell"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0008406 "gonad development"
evidence=IMP] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0018991
GO:GO:0040010 GO:GO:0008406 GO:GO:0002119 GO:GO:0046872
GO:GO:0018996 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0010171
GO:GO:0040011 GO:GO:0040018 GO:GO:0003700 GO:GO:0006351
GO:GO:0043652 KO:K08701 eggNOG:NOG324222
GeneTree:ENSGT00700000104109 EMBL:U13075 EMBL:U51231 EMBL:U51136
EMBL:AF332203 EMBL:AF332202 EMBL:Z71258 PIR:T18848
RefSeq:NP_001020975.1 RefSeq:NP_001020976.1 RefSeq:NP_001020977.1
RefSeq:NP_001032969.1 RefSeq:NP_001032970.1 RefSeq:NP_001032971.1
UniGene:Cel.19389 ProteinModelPortal:P41828 SMR:P41828
IntAct:P41828 STRING:P41828 EnsemblMetazoa:C01H6.5a GeneID:172460
KEGG:cel:CELE_C01H6.5 UCSC:C01H6.5c CTD:172460 WormBase:C01H6.5a
WormBase:C01H6.5b WormBase:C01H6.5c WormBase:C01H6.5d
WormBase:C01H6.5e WormBase:C01H6.5f InParanoid:P41828 OMA:FAAMYYN
NextBio:875597 Uniprot:P41828
Length = 588
Score = 213 (80.0 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 36/66 (54%), Positives = 50/66 (75%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS + Y+C R C+V R+NRNRCQYCR KKC+ +GMSRD+V++GR+ K+ R
Sbjct: 184 KGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRLKKCIELGMSRDAVKFGRMSKKQR 243
Query: 63 ERSDSE 68
E+ + E
Sbjct: 244 EKVEDE 249
Score = 107 (42.7 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFEL 208
W+ FA + P +Q ++EFAK + GF +L Q+ Q+ L+K FEL
Sbjct: 387 WELFARELNPLIQAIIEFAKSIDGFMNLPQETQIQLLKGSVFEL 430
>UNIPROTKB|P51126 [details] [associations]
symbol:rara "Retinoic acid receptor alpha" species:8355
"Xenopus laevis" [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0021955 "central nervous system neuron
axonogenesis" evidence=IMP] [GO:0048384 "retinoic acid receptor
signaling pathway" evidence=IMP] [GO:0050769 "positive regulation
of neurogenesis" evidence=IMP] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0006351
GO:GO:0050769 GO:GO:0048384 GO:GO:0021955 HOVERGEN:HBG005606
GO:GO:0003708 EMBL:L11445 PIR:A41977 ProteinModelPortal:P51126
SMR:P51126 Xenbase:XB-GENE-865415 Uniprot:P51126
Length = 458
Score = 188 (71.2 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
Identities = 35/66 (53%), Positives = 46/66 (69%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 167
Query: 63 ERSDSE 68
E E
Sbjct: 168 ESPKPE 173
Score = 127 (49.8 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS-S 221
LW +F+ T + + VEFAK++PGF L+ DQ+ L+K ++ I + +R T D +
Sbjct: 224 LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKSACLDILILRICTRYTPDQDT 283
Query: 222 LTFSDGMYVTRQQL 235
+TFSDG+ + R Q+
Sbjct: 284 MTFSDGLTLNRTQM 297
>UNIPROTKB|D4A6Q3 [details] [associations]
symbol:Rara "Protein Rara" species:10116 "Rattus
norvegicus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:3534 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003708 IPI:IPI00949177
Ensembl:ENSRNOT00000065435 ArrayExpress:D4A6Q3 Uniprot:D4A6Q3
Length = 406
Score = 189 (71.6 bits), Expect = 4.7e-25, Sum P(2) = 4.7e-25
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 53 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 111
Query: 63 ERSDSETGSTRVST 76
E E + T
Sbjct: 112 ETPKPECSESYTLT 125
Score = 123 (48.4 bits), Expect = 4.7e-25, Sum P(2) = 4.7e-25
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS-S 221
LW +F+ T + + VEFAK++PGF L+ DQ+ L+K ++ I + +R T + +
Sbjct: 168 LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDT 227
Query: 222 LTFSDGMYVTRQQL 235
+TFSDG+ + R Q+
Sbjct: 228 MTFSDGLTLNRTQM 241
>UNIPROTKB|Q90966 [details] [associations]
symbol:RARA "Retinoic acid receptor alpha" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032526 "response to
retinoic acid" evidence=IDA] [GO:0021575 "hindbrain morphogenesis"
evidence=IDA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0032526 GO:GO:0021575
HOVERGEN:HBG005606 GO:GO:0003708 eggNOG:NOG297448 KO:K08527
CTD:5914 EMBL:X73972 EMBL:X78335 IPI:IPI00603905 IPI:IPI00604270
PIR:I50674 RefSeq:NP_989867.1 UniGene:Gga.112
ProteinModelPortal:Q90966 SMR:Q90966 STRING:Q90966 GeneID:395213
KEGG:gga:395213 NextBio:20815302 Uniprot:Q90966
Length = 460
Score = 191 (72.3 bits), Expect = 5.3e-25, Sum P(2) = 5.3e-25
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 167
Query: 63 ERSDSETGSTRVSTTGAE 80
+ +E + + T E
Sbjct: 168 DVPKTECSESYIVTPEVE 185
Score = 123 (48.4 bits), Expect = 5.3e-25, Sum P(2) = 5.3e-25
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS-S 221
LW +F+ T + + VEFAK++PGF L+ DQ+ L+K ++ I + +R T + +
Sbjct: 224 LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDT 283
Query: 222 LTFSDGMYVTRQQL 235
+TFSDG+ + R Q+
Sbjct: 284 MTFSDGLTLNRTQM 297
Score = 36 (17.7 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 172 VTPSVQRVVEFAKRV-----PGFCDLSQ 194
VTP V+ ++E ++ P C L +
Sbjct: 180 VTPEVEELIEKVRKAHQETFPALCQLGK 207
>ZFIN|ZDB-GENE-041210-169 [details] [associations]
symbol:pparaa "peroxisome proliferator-activated
receptor alpha a" species:7955 "Danio rerio" [GO:0043401 "steroid
hormone mediated signaling pathway" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003074
InterPro:IPR003076 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PRINTS:PR01289 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-041210-169 GO:GO:0005634
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0030522 eggNOG:NOG266867 HOGENOM:HOG000261626
HOVERGEN:HBG106004 EMBL:DQ017612 IPI:IPI00934276 UniGene:Dr.88405
InParanoid:Q1L694 Uniprot:Q1L694
Length = 473
Score = 191 (72.3 bits), Expect = 7.6e-25, Sum P(2) = 7.6e-25
Identities = 33/67 (49%), Positives = 53/67 (79%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R+ C + + NRN+CQYCRF +CLAVGMS +++R+GR+P+
Sbjct: 123 KGFFRRTIRLKLEYDKCERN--CKIQKKNRNKCQYCRFPQCLAVGMSHNAIRFGRIPQSE 180
Query: 62 RERSDSE 68
++R +E
Sbjct: 181 KQRLKAE 187
Score = 122 (48.0 bits), Expect = 7.6e-25, Sum P(2) = 7.6e-25
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 161 RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTD 219
RL+L+ Q+A+ T V + E+AK VPGF DL +DQ+ L+K G +E L+ S + D
Sbjct: 277 RLFLFCQYASVAT--VTELTEYAKAVPGFADLDLNDQVTLLKYGVYEALFTLLASCMNKD 334
Query: 220 SSLTFSDGMYVTRQQLE 236
L G ++TR+ L+
Sbjct: 335 GLLVAQGGGFITREFLK 351
>ZFIN|ZDB-GENE-070314-1 [details] [associations]
symbol:rargb "retinoic acid receptor, gamma b"
species:7955 "Danio rerio" [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0048384 "retinoic acid receptor signaling pathway"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-070314-1 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
HOVERGEN:HBG005606 GO:GO:0003708 eggNOG:NOG297448 OrthoDB:EOG4F7NK7
EMBL:EF028131 IPI:IPI00679293 RefSeq:NP_001076779.1
UniGene:Dr.135572 ProteinModelPortal:A2T928 SMR:A2T928
STRING:A2T928 GeneID:100034753 KEGG:dre:100034753 CTD:100034753
NextBio:20788475 Uniprot:A2T928
Length = 489
Score = 181 (68.8 bits), Expect = 7.6e-25, Sum P(2) = 7.6e-25
Identities = 32/58 (55%), Positives = 42/58 (72%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R K+
Sbjct: 86 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLRKCFEVGMSKEAVRNDRNKKK 143
Score = 133 (51.9 bits), Expect = 7.6e-25, Sum P(2) = 7.6e-25
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDS 220
L LW +F+ T + ++VEFAKR+PGF L+ DQ+ L+K + L + +R T +
Sbjct: 200 LGLWDKFSELSTKCIIKIVEFAKRLPGFTSLTIADQITLLKSACLDILMLRICTRYTPEQ 259
Query: 221 -SLTFSDGMYVTRQQL 235
++TFSDG+ + R Q+
Sbjct: 260 DTMTFSDGLTLNRTQM 275
>UNIPROTKB|Q499N1 [details] [associations]
symbol:Rara "Protein Rara" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001657 "ureteric bud development"
evidence=IEA] [GO:0001972 "retinoic acid binding" evidence=IEA]
[GO:0003417 "growth plate cartilage development" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
[GO:0003708 "retinoic acid receptor activity" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=IEA]
[GO:0005102 "receptor binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0007281
"germ cell development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0014068 "positive regulation of
phosphatidylinositol 3-kinase cascade" evidence=IMP] [GO:0019904
"protein domain specific binding" evidence=IEA] [GO:0030425
"dendrite" evidence=IEA] [GO:0030520 "intracellular estrogen
receptor signaling pathway" evidence=IEA] [GO:0030853 "negative
regulation of granulocyte differentiation" evidence=IEA]
[GO:0031490 "chromatin DNA binding" evidence=IEA] [GO:0032355
"response to estradiol stimulus" evidence=IEA] [GO:0032689
"negative regulation of interferon-gamma production" evidence=IEA]
[GO:0032720 "negative regulation of tumor necrosis factor
production" evidence=IEA] [GO:0032736 "positive regulation of
interleukin-13 production" evidence=IEA] [GO:0032753 "positive
regulation of interleukin-4 production" evidence=IEA] [GO:0032754
"positive regulation of interleukin-5 production" evidence=IEA]
[GO:0035014 "phosphatidylinositol 3-kinase regulator activity"
evidence=IMP] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043025 "neuronal cell body" evidence=IEA]
[GO:0043277 "apoptotic cell clearance" evidence=IEA] [GO:0043422
"protein kinase B binding" evidence=IEA] [GO:0043551 "regulation of
phosphatidylinositol 3-kinase activity" evidence=IMP] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0044323 "retinoic
acid-responsive element binding" evidence=IEA] [GO:0045630
"positive regulation of T-helper 2 cell differentiation"
evidence=IEA] [GO:0045787 "positive regulation of cell cycle"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0045947
"negative regulation of translational initiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0051018 "protein kinase A binding" evidence=IEA] [GO:0051099
"positive regulation of binding" evidence=IEA] [GO:0051897
"positive regulation of protein kinase B signaling cascade"
evidence=IMP] [GO:0055012 "ventricular cardiac muscle cell
differentiation" evidence=IEA] [GO:0060010 "Sertoli cell fate
commitment" evidence=IEA] [GO:0060591 "chondroblast
differentiation" evidence=IEA] [GO:0061037 "negative regulation of
cartilage development" evidence=IEA] [GO:0070374 "positive
regulation of ERK1 and ERK2 cascade" evidence=IMP] [GO:0071222
"cellular response to lipopolysaccharide" evidence=IEA] [GO:0071300
"cellular response to retinoic acid" evidence=IEA] [GO:0071391
"cellular response to estrogen stimulus" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003078 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 RGD:3534 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0070374 GO:GO:0014068 GO:GO:0051897
EMBL:CH473948 HOVERGEN:HBG005606 GO:GO:0035014 GO:GO:0003708
eggNOG:NOG297448 GeneTree:ENSGT00680000099662 HOGENOM:HOG000010312
KO:K08527 CTD:5914 UniGene:Rn.91057 EMBL:BC099830 IPI:IPI00212283
RefSeq:NP_113716.2 SMR:Q499N1 STRING:Q499N1
Ensembl:ENSRNOT00000008659 GeneID:24705 KEGG:rno:24705
ChEMBL:CHEMBL2269 NextBio:604175 Genevestigator:Q499N1
Uniprot:Q499N1
Length = 459
Score = 189 (71.6 bits), Expect = 8.6e-25, Sum P(2) = 8.6e-25
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 106 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 164
Query: 63 ERSDSETGSTRVST 76
E E + T
Sbjct: 165 ETPKPECSESYTLT 178
Score = 123 (48.4 bits), Expect = 8.6e-25, Sum P(2) = 8.6e-25
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS-S 221
LW +F+ T + + VEFAK++PGF L+ DQ+ L+K ++ I + +R T + +
Sbjct: 221 LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDT 280
Query: 222 LTFSDGMYVTRQQL 235
+TFSDG+ + R Q+
Sbjct: 281 MTFSDGLTLNRTQM 294
>ZFIN|ZDB-GENE-980526-531 [details] [associations]
symbol:rarga "retinoic acid receptor gamma a"
species:7955 "Danio rerio" [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0048384 "retinoic acid receptor signaling pathway"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0060037 "pharyngeal system development"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003078 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 ZFIN:ZDB-GENE-980526-531 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 EMBL:BX465864 GO:GO:0003708
GeneTree:ENSGT00680000099662 EMBL:BX546466 IPI:IPI00817162
Ensembl:ENSDART00000103158 ArrayExpress:F1RAM8 Bgee:F1RAM8
Uniprot:F1RAM8
Length = 507
Score = 182 (69.1 bits), Expect = 8.7e-25, Sum P(2) = 8.7e-25
Identities = 39/92 (42%), Positives = 54/92 (58%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C + ++ RNRCQYCR +KC VGMS+++VR R K+ +
Sbjct: 106 KGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR-NKKKK 164
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSL 94
+ D PP S E +G ++ L
Sbjct: 165 DVKDEVI-----------PPESYELSGELEEL 185
Score = 132 (51.5 bits), Expect = 8.7e-25, Sum P(2) = 8.7e-25
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDS 220
L LW +F+ T + ++VEFAKR+PGF L+ DQ+ L+K + L + +R T +
Sbjct: 220 LGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQ 279
Query: 221 -SLTFSDGMYVTRQQL 235
++TFSDG+ + R Q+
Sbjct: 280 DTMTFSDGLTLNRTQM 295
>UNIPROTKB|F1PN49 [details] [associations]
symbol:RARA "Retinoic acid receptor alpha" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003708 "retinoic
acid receptor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003708
GeneTree:ENSGT00680000099662 EMBL:AAEX03006463 EMBL:AAEX03006464
EMBL:AAEX03006465 ProteinModelPortal:F1PN49
Ensembl:ENSCAFT00000011311 Uniprot:F1PN49
Length = 462
Score = 189 (71.6 bits), Expect = 8.9e-25, Sum P(2) = 8.9e-25
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 167
Query: 63 ERSDSETGSTRVST 76
E E + T
Sbjct: 168 EAPKPECSESYTLT 181
Score = 123 (48.4 bits), Expect = 8.9e-25, Sum P(2) = 8.9e-25
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS-S 221
LW +F+ T + + VEFAK++PGF L+ DQ+ L+K ++ I + +R T + +
Sbjct: 224 LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDT 283
Query: 222 LTFSDGMYVTRQQL 235
+TFSDG+ + R Q+
Sbjct: 284 MTFSDGLTLNRTQM 297
>UNIPROTKB|F1RXC9 [details] [associations]
symbol:RARA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071391 "cellular response to estrogen stimulus"
evidence=IEA] [GO:0071300 "cellular response to retinoic acid"
evidence=IEA] [GO:0071222 "cellular response to lipopolysaccharide"
evidence=IEA] [GO:0061037 "negative regulation of cartilage
development" evidence=IEA] [GO:0060591 "chondroblast
differentiation" evidence=IEA] [GO:0060010 "Sertoli cell fate
commitment" evidence=IEA] [GO:0055012 "ventricular cardiac muscle
cell differentiation" evidence=IEA] [GO:0051099 "positive
regulation of binding" evidence=IEA] [GO:0051018 "protein kinase A
binding" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0045947 "negative regulation of
translational initiation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045787 "positive regulation of cell cycle"
evidence=IEA] [GO:0045630 "positive regulation of T-helper 2 cell
differentiation" evidence=IEA] [GO:0044323 "retinoic
acid-responsive element binding" evidence=IEA] [GO:0043422 "protein
kinase B binding" evidence=IEA] [GO:0043277 "apoptotic cell
clearance" evidence=IEA] [GO:0043025 "neuronal cell body"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0032754 "positive regulation of interleukin-5
production" evidence=IEA] [GO:0032753 "positive regulation of
interleukin-4 production" evidence=IEA] [GO:0032736 "positive
regulation of interleukin-13 production" evidence=IEA] [GO:0032720
"negative regulation of tumor necrosis factor production"
evidence=IEA] [GO:0032689 "negative regulation of interferon-gamma
production" evidence=IEA] [GO:0032355 "response to estradiol
stimulus" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0030853 "negative regulation of granulocyte
differentiation" evidence=IEA] [GO:0030520 "intracellular estrogen
receptor signaling pathway" evidence=IEA] [GO:0030425 "dendrite"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0006468
"protein phosphorylation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005102 "receptor binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003417 "growth plate cartilage development" evidence=IEA]
[GO:0001972 "retinoic acid binding" evidence=IEA] [GO:0001657
"ureteric bud development" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003708 "retinoic
acid receptor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005737
GO:GO:0003714 GO:GO:0032689 GO:GO:0032355 GO:GO:0046872
GO:GO:0045947 GO:GO:0008284 GO:GO:0043025 GO:GO:0030425
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0071300 GO:GO:0045944
GO:GO:0006468 GO:GO:0007283 GO:GO:0071222 GO:GO:0000122
GO:GO:0000790 GO:GO:0003713 GO:GO:0032720 GO:GO:0007281
GO:GO:0035264 GO:GO:0030853 GO:GO:0051099 GO:GO:0031490
GO:GO:0001657 GO:GO:0030520 GO:GO:0045787 GO:GO:0071391
GO:GO:0043277 GO:GO:0032753 GO:GO:0045630 GO:GO:0003417
GO:GO:0001972 GO:GO:0060591 GO:GO:0003708 GO:GO:0032736
GO:GO:0032754 GO:GO:0061037 GO:GO:0055012 GO:GO:0044323
GeneTree:ENSGT00680000099662 KO:K08527 OMA:RTENVCI GO:GO:0060010
EMBL:CU928542 RefSeq:XP_003131522.1 RefSeq:XP_003358102.1
UniGene:Ssc.15829 Ensembl:ENSSSCT00000019026 GeneID:396709
KEGG:ssc:396709 ArrayExpress:F1RXC9 Uniprot:F1RXC9
Length = 462
Score = 189 (71.6 bits), Expect = 8.9e-25, Sum P(2) = 8.9e-25
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 167
Query: 63 ERSDSETGSTRVST 76
E E + T
Sbjct: 168 EAPKPECSESYTLT 181
Score = 123 (48.4 bits), Expect = 8.9e-25, Sum P(2) = 8.9e-25
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS-S 221
LW +F+ T + + VEFAK++PGF L+ DQ+ L+K ++ I + +R T + +
Sbjct: 224 LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDT 283
Query: 222 LTFSDGMYVTRQQL 235
+TFSDG+ + R Q+
Sbjct: 284 MTFSDGLTLNRTQM 297
>UNIPROTKB|G3V956 [details] [associations]
symbol:Rara "Protein Rara" species:10116 "Rattus
norvegicus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:3534 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 EMBL:CH473948 GO:GO:0003708
OMA:RTENVCI UniGene:Rn.91057 Ensembl:ENSRNOT00000036872
Uniprot:G3V956
Length = 462
Score = 189 (71.6 bits), Expect = 8.9e-25, Sum P(2) = 8.9e-25
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 167
Query: 63 ERSDSETGSTRVST 76
E E + T
Sbjct: 168 ETPKPECSESYTLT 181
Score = 123 (48.4 bits), Expect = 8.9e-25, Sum P(2) = 8.9e-25
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS-S 221
LW +F+ T + + VEFAK++PGF L+ DQ+ L+K ++ I + +R T + +
Sbjct: 224 LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDT 283
Query: 222 LTFSDGMYVTRQQL 235
+TFSDG+ + R Q+
Sbjct: 284 MTFSDGLTLNRTQM 297
>UNIPROTKB|F1NWE8 [details] [associations]
symbol:RARB "Retinoic acid receptor beta" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003708
GeneTree:ENSGT00680000099662 EMBL:AADN02001127 EMBL:AADN02001120
EMBL:AADN02001121 EMBL:AADN02001122 EMBL:AADN02001123
EMBL:AADN02001124 EMBL:AADN02001125 EMBL:AADN02001126
IPI:IPI00681960 ProteinModelPortal:F1NWE8
Ensembl:ENSGALT00000018430 ArrayExpress:F1NWE8 Uniprot:F1NWE8
Length = 368
Score = 190 (71.9 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 50 KGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 108
Query: 63 ERSDSET 69
E + E+
Sbjct: 109 EPTKQES 115
Score = 116 (45.9 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 25/69 (36%), Positives = 44/69 (63%)
Query: 169 AAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS-SLTFSD 226
+ + T + ++VEFAKR+PGF L+ DQ+ L+K ++ I + +R T + ++TFSD
Sbjct: 168 SVNATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSD 227
Query: 227 GMYVTRQQL 235
G+ + R Q+
Sbjct: 228 GLTLNRTQM 236
Score = 37 (18.1 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 64 RSDSETGSTRVSTTGAEPPSSL 85
RS S G+ RV T E P S+
Sbjct: 324 RSISAKGAERVITLKMEIPGSM 345
>UNIPROTKB|E2R2V0 [details] [associations]
symbol:RARA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071391 "cellular response to estrogen
stimulus" evidence=IEA] [GO:0071300 "cellular response to retinoic
acid" evidence=IEA] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] [GO:0061037 "negative regulation
of cartilage development" evidence=IEA] [GO:0060591 "chondroblast
differentiation" evidence=IEA] [GO:0060010 "Sertoli cell fate
commitment" evidence=IEA] [GO:0055012 "ventricular cardiac muscle
cell differentiation" evidence=IEA] [GO:0051099 "positive
regulation of binding" evidence=IEA] [GO:0051018 "protein kinase A
binding" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0045947 "negative regulation of
translational initiation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045787 "positive regulation of cell cycle"
evidence=IEA] [GO:0045630 "positive regulation of T-helper 2 cell
differentiation" evidence=IEA] [GO:0044323 "retinoic
acid-responsive element binding" evidence=IEA] [GO:0043422 "protein
kinase B binding" evidence=IEA] [GO:0043277 "apoptotic cell
clearance" evidence=IEA] [GO:0043025 "neuronal cell body"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0032754 "positive regulation of interleukin-5
production" evidence=IEA] [GO:0032753 "positive regulation of
interleukin-4 production" evidence=IEA] [GO:0032736 "positive
regulation of interleukin-13 production" evidence=IEA] [GO:0032720
"negative regulation of tumor necrosis factor production"
evidence=IEA] [GO:0032689 "negative regulation of interferon-gamma
production" evidence=IEA] [GO:0032355 "response to estradiol
stimulus" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0030853 "negative regulation of granulocyte
differentiation" evidence=IEA] [GO:0030520 "intracellular estrogen
receptor signaling pathway" evidence=IEA] [GO:0030425 "dendrite"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0006468
"protein phosphorylation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005102 "receptor binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003417 "growth plate cartilage development" evidence=IEA]
[GO:0001972 "retinoic acid binding" evidence=IEA] [GO:0001657
"ureteric bud development" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003708 "retinoic
acid receptor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005737
GO:GO:0003714 GO:GO:0032689 GO:GO:0032355 GO:GO:0046872
GO:GO:0045947 GO:GO:0008284 GO:GO:0043025 GO:GO:0030425
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0071300 GO:GO:0045944
GO:GO:0006468 GO:GO:0007283 GO:GO:0071222 GO:GO:0000122
GO:GO:0000790 GO:GO:0003713 GO:GO:0032720 GO:GO:0007281
GO:GO:0035264 GO:GO:0030853 GO:GO:0051099 GO:GO:0031490
GO:GO:0001657 GO:GO:0030520 GO:GO:0045787 GO:GO:0071391
GO:GO:0043277 GO:GO:0032753 GO:GO:0045630 GO:GO:0003417
GO:GO:0001972 GO:GO:0060591 GO:GO:0003708 GO:GO:0032736
GO:GO:0032754 GO:GO:0061037 GO:GO:0055012 GO:GO:0044323
GeneTree:ENSGT00680000099662 OMA:RTENVCI GO:GO:0060010
EMBL:AAEX03006463 EMBL:AAEX03006464 EMBL:AAEX03006465
Ensembl:ENSCAFT00000035664 Uniprot:E2R2V0
Length = 486
Score = 189 (71.6 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 133 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 191
Query: 63 ERSDSETGSTRVST 76
E E + T
Sbjct: 192 EAPKPECSESYTLT 205
Score = 123 (48.4 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS-S 221
LW +F+ T + + VEFAK++PGF L+ DQ+ L+K ++ I + +R T + +
Sbjct: 248 LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDT 307
Query: 222 LTFSDGMYVTRQQL 235
+TFSDG+ + R Q+
Sbjct: 308 MTFSDGLTLNRTQM 321
>MGI|MGI:97856 [details] [associations]
symbol:Rara "retinoic acid receptor, alpha" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IGI;IDA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=ISO] [GO:0001657 "ureteric
bud development" evidence=IMP] [GO:0001972 "retinoic acid binding"
evidence=ISO] [GO:0003417 "growth plate cartilage development"
evidence=IGI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO;IDA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=ISO;IDA] [GO:0003713 "transcription coactivator activity"
evidence=ISO] [GO:0003714 "transcription corepressor activity"
evidence=ISO] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IDA] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0007165 "signal transduction" evidence=ISO] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0008134 "transcription factor binding"
evidence=ISO;IPI] [GO:0008144 "drug binding" evidence=ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=ISO;IGI] [GO:0008285
"negative regulation of cell proliferation" evidence=ISO]
[GO:0008584 "male gonad development" evidence=ISO] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0010629
"negative regulation of gene expression" evidence=IGI] [GO:0017148
"negative regulation of translation" evidence=ISO] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO;IDA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=ISO] [GO:0030522 "intracellular receptor mediated
signaling pathway" evidence=IDA] [GO:0030852 "regulation of
granulocyte differentiation" evidence=IMP] [GO:0030853 "negative
regulation of granulocyte differentiation" evidence=ISO]
[GO:0031490 "chromatin DNA binding" evidence=ISO] [GO:0031641
"regulation of myelination" evidence=ISO] [GO:0032355 "response to
estradiol stimulus" evidence=ISO] [GO:0032526 "response to retinoic
acid" evidence=ISO;IMP] [GO:0032689 "negative regulation of
interferon-gamma production" evidence=ISO] [GO:0032720 "negative
regulation of tumor necrosis factor production" evidence=ISO]
[GO:0032736 "positive regulation of interleukin-13 production"
evidence=ISO] [GO:0032753 "positive regulation of interleukin-4
production" evidence=ISO] [GO:0032754 "positive regulation of
interleukin-5 production" evidence=ISO] [GO:0035264 "multicellular
organism growth" evidence=IGI] [GO:0042981 "regulation of apoptotic
process" evidence=ISO] [GO:0043005 "neuron projection"
evidence=ISO] [GO:0043025 "neuronal cell body" evidence=IDA]
[GO:0043277 "apoptotic cell clearance" evidence=ISO] [GO:0043401
"steroid hormone mediated signaling pathway" evidence=IEA]
[GO:0043422 "protein kinase B binding" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IGI;IDA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IMP]
[GO:0044323 "retinoic acid-responsive element binding"
evidence=ISO] [GO:0045471 "response to ethanol" evidence=ISO]
[GO:0045596 "negative regulation of cell differentiation"
evidence=IMP] [GO:0045630 "positive regulation of T-helper 2 cell
differentiation" evidence=ISO] [GO:0045666 "positive regulation of
neuron differentiation" evidence=ISO] [GO:0045787 "positive
regulation of cell cycle" evidence=ISO] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO;IGI] [GO:0045947
"negative regulation of translational initiation" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] [GO:0048027 "mRNA 5'-UTR
binding" evidence=ISO] [GO:0048167 "regulation of synaptic
plasticity" evidence=ISO] [GO:0048384 "retinoic acid receptor
signaling pathway" evidence=ISO;IDA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=ISO] [GO:0051018 "protein kinase A
binding" evidence=ISO] [GO:0051099 "positive regulation of binding"
evidence=ISO] [GO:0055012 "ventricular cardiac muscle cell
differentiation" evidence=IMP] [GO:0060010 "Sertoli cell fate
commitment" evidence=IMP] [GO:0060591 "chondroblast
differentiation" evidence=IMP] [GO:0061037 "negative regulation of
cartilage development" evidence=IMP] [GO:0071222 "cellular response
to lipopolysaccharide" evidence=IDA] [GO:0071300 "cellular response
to retinoic acid" evidence=ISO] [GO:0071391 "cellular response to
estrogen stimulus" evidence=ISO] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 MGI:MGI:97856
GO:GO:0005634 GO:GO:0005737 GO:GO:0003714 GO:GO:0045892
GO:GO:0032689 GO:GO:0032355 GO:GO:0046872 GO:GO:0045947
GO:GO:0008284 GO:GO:0043025 GO:GO:0030425 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0071300 GO:GO:0045944 GO:GO:0006468
GO:GO:0007283 GO:GO:0071222 GO:GO:0000122 GO:GO:0044212
GO:GO:0000790 GO:GO:0003713 GO:GO:0032526 GO:GO:0032720
GO:GO:0007281 GO:GO:0035264 GO:GO:0030853 GO:GO:0010628
GO:GO:0051099 GO:GO:0031490 GO:GO:0001657 GO:GO:0030520
GO:GO:0045787 GO:GO:0071391 GO:GO:0043277 GO:GO:0032753
GO:GO:0045630 GO:GO:0003417 HOVERGEN:HBG005606 GO:GO:0001972
GO:GO:0060591 GO:GO:0003708 GO:GO:0045596 GO:GO:0032736
GO:GO:0032754 GO:GO:0061037 GO:GO:0055012 GO:GO:0044323
eggNOG:NOG297448 GeneTree:ENSGT00680000099662 HOGENOM:HOG000010312
KO:K08527 OMA:RTENVCI OrthoDB:EOG4F7NK7 CTD:5914 GO:GO:0060010
EMBL:X56572 EMBL:X56565 EMBL:S56656 EMBL:X57528 EMBL:M60909
EMBL:BC010216 IPI:IPI00114447 IPI:IPI00223075 PIR:S05050
RefSeq:NP_001169999.1 RefSeq:NP_001170773.1 RefSeq:NP_001170774.1
RefSeq:NP_033050.2 UniGene:Mm.439744 ProteinModelPortal:P11416
SMR:P11416 DIP:DIP-31480N IntAct:P11416 MINT:MINT-5210296
STRING:P11416 PhosphoSite:P11416 PRIDE:P11416
Ensembl:ENSMUST00000068133 Ensembl:ENSMUST00000107473
Ensembl:ENSMUST00000107474 Ensembl:ENSMUST00000107475
Ensembl:ENSMUST00000164748 GeneID:19401 KEGG:mmu:19401
UCSC:uc007lhz.2 InParanoid:P11416 BindingDB:P11416
ChEMBL:CHEMBL2792 NextBio:296513 Bgee:P11416 CleanEx:MM_RARA
Genevestigator:P11416 GermOnline:ENSMUSG00000037992 GO:GO:0030852
Uniprot:P11416
Length = 462
Score = 188 (71.2 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFDVGMSKESVRNDR-NKKKK 167
Query: 63 ERSDSETGSTRVST 76
E E + T
Sbjct: 168 EAPKPECSESYTLT 181
Score = 123 (48.4 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS-S 221
LW +F+ T + + VEFAK++PGF L+ DQ+ L+K ++ I + +R T + +
Sbjct: 224 LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDT 283
Query: 222 LTFSDGMYVTRQQL 235
+TFSDG+ + R Q+
Sbjct: 284 MTFSDGLTLNRTQM 297
>UNIPROTKB|F1MWQ3 [details] [associations]
symbol:RARA "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071391 "cellular response to estrogen stimulus"
evidence=IEA] [GO:0071300 "cellular response to retinoic acid"
evidence=IEA] [GO:0071222 "cellular response to lipopolysaccharide"
evidence=IEA] [GO:0061037 "negative regulation of cartilage
development" evidence=IEA] [GO:0060591 "chondroblast
differentiation" evidence=IEA] [GO:0060010 "Sertoli cell fate
commitment" evidence=IEA] [GO:0055012 "ventricular cardiac muscle
cell differentiation" evidence=IEA] [GO:0051099 "positive
regulation of binding" evidence=IEA] [GO:0051018 "protein kinase A
binding" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0045947 "negative regulation of
translational initiation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045787 "positive regulation of cell cycle"
evidence=IEA] [GO:0045630 "positive regulation of T-helper 2 cell
differentiation" evidence=IEA] [GO:0044323 "retinoic
acid-responsive element binding" evidence=IEA] [GO:0043422 "protein
kinase B binding" evidence=IEA] [GO:0043277 "apoptotic cell
clearance" evidence=IEA] [GO:0043025 "neuronal cell body"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0032754 "positive regulation of interleukin-5
production" evidence=IEA] [GO:0032753 "positive regulation of
interleukin-4 production" evidence=IEA] [GO:0032736 "positive
regulation of interleukin-13 production" evidence=IEA] [GO:0032720
"negative regulation of tumor necrosis factor production"
evidence=IEA] [GO:0032689 "negative regulation of interferon-gamma
production" evidence=IEA] [GO:0032355 "response to estradiol
stimulus" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0030853 "negative regulation of granulocyte
differentiation" evidence=IEA] [GO:0030520 "intracellular estrogen
receptor signaling pathway" evidence=IEA] [GO:0030425 "dendrite"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0006468
"protein phosphorylation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005102 "receptor binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003417 "growth plate cartilage development" evidence=IEA]
[GO:0001972 "retinoic acid binding" evidence=IEA] [GO:0001657
"ureteric bud development" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003708 "retinoic
acid receptor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005737
GO:GO:0003714 GO:GO:0032689 GO:GO:0032355 GO:GO:0046872
GO:GO:0045947 GO:GO:0008284 GO:GO:0043025 GO:GO:0030425
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0071300 GO:GO:0045944
GO:GO:0006468 GO:GO:0007283 GO:GO:0071222 GO:GO:0000122
GO:GO:0000790 GO:GO:0003713 GO:GO:0032720 GO:GO:0007281
GO:GO:0035264 GO:GO:0030853 GO:GO:0051099 GO:GO:0031490
GO:GO:0001657 GO:GO:0030520 GO:GO:0045787 GO:GO:0071391
GO:GO:0043277 GO:GO:0032753 GO:GO:0045630 GO:GO:0003417
GO:GO:0001972 GO:GO:0060591 GO:GO:0003708 GO:GO:0032736
GO:GO:0032754 GO:GO:0061037 GO:GO:0055012 GO:GO:0044323
GeneTree:ENSGT00680000099662 KO:K08527 OMA:RTENVCI CTD:5914
GO:GO:0060010 EMBL:DAAA02049130 EMBL:DAAA02049137 EMBL:DAAA02049131
EMBL:DAAA02049132 EMBL:DAAA02049133 EMBL:DAAA02049134
EMBL:DAAA02049135 EMBL:DAAA02049136 IPI:IPI00709635
RefSeq:NP_001014942.2 UniGene:Bt.8306 Ensembl:ENSBTAT00000016586
GeneID:534280 KEGG:bta:534280 NextBio:20876336 Uniprot:F1MWQ3
Length = 462
Score = 187 (70.9 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 33/58 (56%), Positives = 43/58 (74%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+
Sbjct: 109 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK 166
Score = 123 (48.4 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS-S 221
LW +F+ T + + VEFAK++PGF L+ DQ+ L+K ++ I + +R T + +
Sbjct: 224 LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDT 283
Query: 222 LTFSDGMYVTRQQL 235
+TFSDG+ + R Q+
Sbjct: 284 MTFSDGLTLNRTQM 297
Score = 43 (20.2 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 64 RSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTE-LDT 102
RS S G+ RV T E P S+ +Q + ++E LDT
Sbjct: 385 RSISAKGAERVITLKMEIPGSMPPL--IQEMLENSEGLDT 422
>UNIPROTKB|P10276 [details] [associations]
symbol:RARA "Retinoic acid receptor alpha" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0001657 "ureteric bud
development" evidence=IEA] [GO:0003417 "growth plate cartilage
development" evidence=IEA] [GO:0007281 "germ cell development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0014068 "positive regulation of phosphatidylinositol 3-kinase
cascade" evidence=IEA] [GO:0030425 "dendrite" evidence=IEA]
[GO:0035014 "phosphatidylinositol 3-kinase regulator activity"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043025 "neuronal cell body" evidence=IEA]
[GO:0045947 "negative regulation of translational initiation"
evidence=IEA] [GO:0051897 "positive regulation of protein kinase B
signaling cascade" evidence=IEA] [GO:0055012 "ventricular cardiac
muscle cell differentiation" evidence=IEA] [GO:0060010 "Sertoli
cell fate commitment" evidence=IEA] [GO:0060591 "chondroblast
differentiation" evidence=IEA] [GO:0061037 "negative regulation of
cartilage development" evidence=IEA] [GO:0070374 "positive
regulation of ERK1 and ERK2 cascade" evidence=IEA] [GO:0071222
"cellular response to lipopolysaccharide" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051099 "positive regulation of binding" evidence=IMP]
[GO:0003714 "transcription corepressor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=IMP;IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0008284 "positive regulation of cell
proliferation" evidence=IMP] [GO:0045787 "positive regulation of
cell cycle" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP;IDA] [GO:0030853 "negative regulation of granulocyte
differentiation" evidence=IDA] [GO:0019904 "protein domain specific
binding" evidence=IPI] [GO:0071391 "cellular response to estrogen
stimulus" evidence=IDA] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0005102 "receptor binding" evidence=IDA] [GO:0071300 "cellular
response to retinoic acid" evidence=IDA] [GO:0044323 "retinoic
acid-responsive element binding" evidence=IDA] [GO:0046982 "protein
heterodimerization activity" evidence=IDA] [GO:0031490 "chromatin
DNA binding" evidence=IDA] [GO:0043277 "apoptotic cell clearance"
evidence=IMP] [GO:0006468 "protein phosphorylation" evidence=IMP]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0043422 "protein kinase B binding" evidence=IPI] [GO:0051018
"protein kinase A binding" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0001972 "retinoic acid binding" evidence=IDA]
[GO:0003708 "retinoic acid receptor activity" evidence=IDA]
[GO:0007165 "signal transduction" evidence=IDA] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=IDA]
[GO:0032355 "response to estradiol stimulus" evidence=IDA]
[GO:0032689 "negative regulation of interferon-gamma production"
evidence=IDA] [GO:0032720 "negative regulation of tumor necrosis
factor production" evidence=IDA] [GO:0032736 "positive regulation
of interleukin-13 production" evidence=IDA] [GO:0032753 "positive
regulation of interleukin-4 production" evidence=IDA] [GO:0032754
"positive regulation of interleukin-5 production" evidence=IDA]
[GO:0045630 "positive regulation of T-helper 2 cell
differentiation" evidence=IDA] [GO:0009986 "cell surface"
evidence=IC] [GO:0032526 "response to retinoic acid" evidence=IMP]
[GO:0048384 "retinoic acid receptor signaling pathway"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005737 GO:GO:0003714
GO:GO:0045892 GO:GO:0005654 GO:GO:0009986 GO:GO:0032689
GO:GO:0032355 GO:GO:0046872 GO:GO:0045947 GO:GO:0008284
GO:GO:0043025 GO:GO:0030425 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0071300 GO:GO:0045944 GO:GO:0005102 GO:GO:0006468
GO:GO:0007283 Pathway_Interaction_DB:rxr_vdr_pathway GO:GO:0071222
GO:GO:0000122 GO:GO:0000790 GO:GO:0003713 GO:GO:0032720
GO:GO:0007281 GO:GO:0046982 GO:GO:0035264 GO:GO:0030853
GO:GO:0051018 Pathway_Interaction_DB:retinoic_acid_pathway
DrugBank:DB00459 GO:GO:0006367 GO:GO:0051099 GO:GO:0031490
GO:GO:0001657 GO:GO:0030520 GO:GO:0045787 GO:GO:0071391
GO:GO:0043277 GO:GO:0032753 GO:GO:0045630 GO:GO:0003417
HOVERGEN:HBG005606 GO:GO:0001972 GO:GO:0060591 GO:GO:0003708
GO:GO:0032736 GO:GO:0032754 GO:GO:0061037 GO:GO:0055012
GO:GO:0044323 PDB:3KMR PDB:4DQM PDBsum:3KMR PDBsum:4DQM PDB:3A9E
PDBsum:3A9E PDB:3KMZ PDBsum:3KMZ EMBL:U41742 EMBL:U41743
Orphanet:520 EMBL:AB067754 DrugBank:DB00523 DrugBank:DB00926
eggNOG:NOG297448 HOGENOM:HOG000010312 KO:K08527 OMA:RTENVCI
CTD:5914 EMBL:X06614 EMBL:X06538 EMBL:AF088895 EMBL:AF088889
EMBL:AF088890 EMBL:AF088891 EMBL:AF088892 EMBL:AF088893
EMBL:AF088894 EMBL:FJ487576 EMBL:AC080112 EMBL:BC008727
EMBL:BC071733 EMBL:X56058 EMBL:X58685 EMBL:AF283809 IPI:IPI00020071
IPI:IPI00218375 IPI:IPI00922641 PIR:A29491 RefSeq:NP_000955.1
RefSeq:NP_001019980.1 RefSeq:NP_001138773.1 RefSeq:NP_001138774.1
UniGene:Hs.654583 PDB:1DKF PDB:1DSZ PDBsum:1DKF PDBsum:1DSZ
ProteinModelPortal:P10276 SMR:P10276 DIP:DIP-34N IntAct:P10276
MINT:MINT-123081 STRING:P10276 PhosphoSite:P10276 DMDM:133483
PaxDb:P10276 PRIDE:P10276 DNASU:5914 Ensembl:ENST00000254066
Ensembl:ENST00000394081 Ensembl:ENST00000394089
Ensembl:ENST00000425707 GeneID:5914 KEGG:hsa:5914 UCSC:uc002huk.2
GeneCards:GC17P038465 HGNC:HGNC:9864 MIM:180240 MIM:612376
neXtProt:NX_P10276 PharmGKB:PA34225 PhylomeDB:P10276
BindingDB:P10276 ChEMBL:CHEMBL2055 ChiTaRS:RARA DrugBank:DB00210
DrugBank:DB00982 DrugBank:DB04942 DrugBank:DB00799
EvolutionaryTrace:P10276 GenomeRNAi:5914 NextBio:23018
ArrayExpress:P10276 Bgee:P10276 CleanEx:HS_RARA
Genevestigator:P10276 GermOnline:ENSG00000131759 GO:GO:0060010
Uniprot:P10276
Length = 462
Score = 187 (70.9 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 33/58 (56%), Positives = 43/58 (74%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+
Sbjct: 109 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK 166
Score = 123 (48.4 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS-S 221
LW +F+ T + + VEFAK++PGF L+ DQ+ L+K ++ I + +R T + +
Sbjct: 224 LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDT 283
Query: 222 LTFSDGMYVTRQQL 235
+TFSDG+ + R Q+
Sbjct: 284 MTFSDGLTLNRTQM 297
Score = 43 (20.2 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 64 RSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTE-LDT 102
RS S G+ RV T E P S+ +Q + ++E LDT
Sbjct: 385 RSISAKGAERVITLKMEIPGSMPPL--IQEMLENSEGLDT 422
>UNIPROTKB|A8MUP8 [details] [associations]
symbol:RARA "Retinoic acid receptor alpha" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 EMBL:CH471152 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
HOVERGEN:HBG005606 GO:GO:0003708 HOGENOM:HOG000010312 EMBL:AC080112
UniGene:Hs.654583 HGNC:HGNC:9864 ChiTaRS:RARA IPI:IPI00014923
SMR:A8MUP8 STRING:A8MUP8 Ensembl:ENST00000394086 Uniprot:A8MUP8
Length = 478
Score = 187 (70.9 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 33/58 (56%), Positives = 43/58 (74%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+
Sbjct: 125 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK 182
Score = 123 (48.4 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS-S 221
LW +F+ T + + VEFAK++PGF L+ DQ+ L+K ++ I + +R T + +
Sbjct: 240 LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDT 299
Query: 222 LTFSDGMYVTRQQL 235
+TFSDG+ + R Q+
Sbjct: 300 MTFSDGLTLNRTQM 313
Score = 43 (20.2 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 64 RSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTE-LDT 102
RS S G+ RV T E P S+ +Q + ++E LDT
Sbjct: 401 RSISAKGAERVITLKMEIPGSMPPL--IQEMLENSEGLDT 438
>UNIPROTKB|Q5FBR4 [details] [associations]
symbol:RARA "Retinoic acid receptor alpha" species:9615
"Canis lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
HOVERGEN:HBG005606 GO:GO:0003708 eggNOG:NOG297448
HOGENOM:HOG000010312 KO:K08527 EMBL:AB179779 RefSeq:NP_001012663.1
UniGene:Cfa.45823 ProteinModelPortal:Q5FBR4 SMR:Q5FBR4
STRING:Q5FBR4 GeneID:480526 KEGG:cfa:480526 CTD:5914
NextBio:20855534 Uniprot:Q5FBR4
Length = 462
Score = 189 (71.6 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+ +
Sbjct: 109 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDR-NKKKK 167
Query: 63 ERSDSETGSTRVST 76
E E + T
Sbjct: 168 EAPKPECSESYTLT 181
Score = 119 (46.9 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS-S 221
LW +F+ T + + VEFAK++PGF L+ DQ+ L+K ++ I + +R T + +
Sbjct: 224 LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDT 283
Query: 222 LTFSDGMYVTRQQL 235
+TFS+G+ + R Q+
Sbjct: 284 MTFSEGLTLNRTQM 297
>WB|WBGene00004786 [details] [associations]
symbol:sex-1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0007538
"primary sex determination" evidence=IGI;IMP] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0042464 "dosage compensation by hypoactivation of
X chromosome" evidence=IGI] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IDA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0002119 GO:GO:0046872 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0010171 GO:GO:0003700 GO:GO:0006351 GO:GO:0000122
GO:GO:0040035 GO:GO:0000977 EMBL:U13074 EMBL:Z50858 PIR:T22154
RefSeq:NP_001024662.1 UniGene:Cel.17916 ProteinModelPortal:P41830
SMR:P41830 DIP:DIP-24967N IntAct:P41830 STRING:P41830
EnsemblMetazoa:F44A6.2.1 EnsemblMetazoa:F44A6.2.2 GeneID:181231
KEGG:cel:CELE_F44A6.2 UCSC:F44A6.2.1 CTD:181231 WormBase:F44A6.2
eggNOG:NOG266867 GeneTree:ENSGT00700000104361 InParanoid:P41830
KO:K08701 OMA:SIQRKID NextBio:913018 ArrayExpress:P41830
GO:GO:0042464 GO:GO:0007538 Uniprot:P41830
Length = 534
Score = 199 (75.1 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 40/72 (55%), Positives = 51/72 (70%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRSIQ++I+YRCL+ C + R +RNRCQYCRFKKCL GMS+DSVR ++ R+
Sbjct: 172 KGFFRRSIQRKIDYRCLKQQVCEIKRESRNRCQYCRFKKCLDSGMSKDSVR--QMKFRNA 229
Query: 63 ERSDSETGSTRV 74
R D S V
Sbjct: 230 MRDDKSPDSVFV 241
Score = 106 (42.4 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 21/79 (26%), Positives = 43/79 (54%)
Query: 161 RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDS 220
RL WQ +A + ++ VV F K +P F ++ +D+ +L++ F L++ + R ++
Sbjct: 295 RLNAWQIYAHEIDVDIKEVVNFVKEIPKFNFINGNDKAVLLRKNAFPLYLLRIVRGMSNR 354
Query: 221 SLTFSDGMYVTRQQLEVMY 239
L DG + + L+++Y
Sbjct: 355 GLMLRDGRLIDFKSLQLLY 373
>UNIPROTKB|P51129 [details] [associations]
symbol:rxrg "Retinoic acid receptor RXR-gamma" species:8355
"Xenopus laevis" [GO:0043565 "sequence-specific DNA binding"
evidence=IPI] [GO:0046966 "thyroid hormone receptor binding"
evidence=IPI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351
HOVERGEN:HBG005606 InterPro:IPR021780 Pfam:PF11825 EMBL:L11443
PIR:D41977 ProteinModelPortal:P51129 SMR:P51129 Uniprot:P51129
Length = 470
Score = 208 (78.3 bits), Expect = 8.3e-24, Sum P(2) = 8.3e-24
Identities = 43/81 (53%), Positives = 60/81 (74%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K CL+ + RNRCQYCR++KCLA+GM R++V+ R +RS
Sbjct: 167 KGFFKRTIRKDLVYTC-RDSKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRS 223
Query: 62 RERSDSETGSTRVSTTGAEPP 82
RE+SD+E ST S+T E P
Sbjct: 224 REKSDTEAEST--SSTSEEMP 242
Score = 94 (38.1 bits), Expect = 8.3e-24, Sum P(2) = 8.3e-24
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F DL +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 287 LVEWAKRIPYFSDLPLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 342
>ZFIN|ZDB-GENE-000112-47 [details] [associations]
symbol:ppardb "peroxisome proliferator-activated
receptor delta b" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003074 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 ZFIN:ZDB-GENE-000112-47 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
GeneTree:ENSGT00700000104361 HOGENOM:HOG000261626
HOVERGEN:HBG106004 KO:K04504 EMBL:CU302443 EMBL:BC162172
EMBL:BC162174 IPI:IPI00505722 RefSeq:NP_571543.1 UniGene:Dr.27180
SMR:A9C4A5 STRING:A9C4A5 Ensembl:ENSDART00000128783
Ensembl:ENSDART00000132584 GeneID:30754 KEGG:dre:30754 CTD:30754
OMA:NTTHEPS NextBio:20807098 Uniprot:A9C4A5
Length = 517
Score = 196 (74.1 bits), Expect = 4.9e-23, Sum P(2) = 4.9e-23
Identities = 38/81 (46%), Positives = 59/81 (72%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY RC R C V + +RN+CQYCRF+KCLA+GMS D++RYGR+P+
Sbjct: 173 KGFFRRTIRMKLEYERCER--ACKVQKKSRNKCQYCRFQKCLALGMSHDAIRYGRMPEAE 230
Query: 62 RER--SDSETGSTRVSTTGAE 80
+++ + G S++GA+
Sbjct: 231 KKKLVAGLLAGENPQSSSGAD 251
Score = 101 (40.6 bits), Expect = 4.9e-23, Sum P(2) = 4.9e-23
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+V+ + EFAK +PGF DL +DQ+ L+K G E + L L ++G +VTR+
Sbjct: 332 TVRELTEFAKNIPGFVDLFLNDQVTLLKYGVHEAIFAMLPSLMNKDGLLVANGKGFVTRE 391
Query: 234 QL 235
L
Sbjct: 392 FL 393
>UNIPROTKB|F1NSP3 [details] [associations]
symbol:RXRG "Retinoic acid receptor RXR-gamma" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004886 "9-cis retinoic
acid receptor activity" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GeneTree:ENSGT00690000101777 GO:GO:0004886 InterPro:IPR021780
Pfam:PF11825 IPI:IPI00600229 EMBL:AADN02034021 EMBL:AADN02034022
EMBL:AADN02034023 Ensembl:ENSGALT00000005387 OMA:FIKFPAG
Uniprot:F1NSP3
Length = 467
Score = 198 (74.8 bits), Expect = 4.9e-23, Sum P(2) = 4.9e-23
Identities = 39/71 (54%), Positives = 55/71 (77%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K CL+ + RNRCQYCR++KCLA+GM R++V+ R +RS
Sbjct: 164 KGFFKRTIRKDLIYTC-RDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRS 220
Query: 62 RERSDSETGST 72
RERS++E ST
Sbjct: 221 RERSENEAEST 231
Score = 97 (39.2 bits), Expect = 4.9e-23, Sum P(2) = 4.9e-23
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 284 LVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 339
>UNIPROTKB|Q9I878 [details] [associations]
symbol:PPAR gamma "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0001012 "RNA polymerase
II regulatory region DNA binding" evidence=IEA] [GO:0001890
"placenta development" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0006917 "induction of
apoptosis" evidence=IEA] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0008144 "drug binding" evidence=IEA] [GO:0008217 "regulation of
blood pressure" evidence=IEA] [GO:0010871 "negative regulation of
receptor biosynthetic process" evidence=IEA] [GO:0010887 "negative
regulation of cholesterol storage" evidence=IEA] [GO:0010891
"negative regulation of sequestering of triglyceride" evidence=IEA]
[GO:0015909 "long-chain fatty acid transport" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0030224 "monocyte
differentiation" evidence=IEA] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
[GO:0030855 "epithelial cell differentiation" evidence=IEA]
[GO:0032526 "response to retinoic acid" evidence=IEA] [GO:0032869
"cellular response to insulin stimulus" evidence=IEA] [GO:0033613
"activating transcription factor binding" evidence=IEA] [GO:0035357
"peroxisome proliferator activated receptor signaling pathway"
evidence=IEA] [GO:0042593 "glucose homeostasis" evidence=IEA]
[GO:0042953 "lipoprotein transport" evidence=IEA] [GO:0045165 "cell
fate commitment" evidence=IEA] [GO:0045600 "positive regulation of
fat cell differentiation" evidence=IEA] [GO:0045713 "low-density
lipoprotein particle receptor biosynthetic process" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0046965 "retinoid X
receptor binding" evidence=IEA] [GO:0048469 "cell maturation"
evidence=IEA] [GO:0048662 "negative regulation of smooth muscle
cell proliferation" evidence=IEA] [GO:0050872 "white fat cell
differentiation" evidence=IEA] [GO:0050873 "brown fat cell
differentiation" evidence=IEA] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0055098 "response to low-density lipoprotein
particle stimulus" evidence=IEA] [GO:0060336 "negative regulation
of interferon-gamma-mediated signaling pathway" evidence=IEA]
[GO:0071285 "cellular response to lithium ion" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003074 InterPro:IPR003077 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01291 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005829
GO:GO:0005634 GO:GO:0008285 GO:GO:0051091 GO:GO:0006917
GO:GO:0032869 GO:GO:0046872 GO:GO:0008144 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0050873
GO:GO:0050872 GO:GO:0045600 GO:GO:0003682 GO:GO:0042593
GO:GO:0010887 GO:GO:0055098 GO:GO:0042953 GO:GO:0000122
GO:GO:0010891 GO:GO:0006919 GO:GO:0001012 GO:GO:0045165
GO:GO:0071285 GO:GO:0015909 eggNOG:NOG266867
GeneTree:ENSGT00700000104361 GO:GO:0060336 GO:GO:0010871
HOGENOM:HOG000261626 HOVERGEN:HBG106004 CTD:5468 KO:K08530
OMA:KTTDKSP GO:GO:0045713 InterPro:IPR022590 Pfam:PF12577
OrthoDB:EOG41ZF9W HSSP:Q96J12 EMBL:AADN02013929 EMBL:AF163811
EMBL:AF470456 EMBL:AB045597 IPI:IPI00598191 RefSeq:NP_001001460.1
UniGene:Gga.3858 SMR:Q9I878 STRING:Q9I878
Ensembl:ENSGALT00000007976 GeneID:373928 KEGG:gga:373928
InParanoid:Q9I878 NextBio:20813460 Uniprot:Q9I878
Length = 475
Score = 184 (69.8 bits), Expect = 5.0e-23, Sum P(2) = 5.0e-23
Identities = 34/70 (48%), Positives = 53/70 (75%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS 71
+E+ +E S
Sbjct: 188 KEKLLAEISS 197
Score = 112 (44.5 bits), Expect = 5.0e-23, Sum P(2) = 5.0e-23
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
++Q+ +VQ + EFAK +PGF +L +DQ+ L+K G E+ ++ L +
Sbjct: 279 IFQRCQFRSVEAVQEITEFAKNIPGFVNLDLNDQVTLLKYGVHEIIYTLLASLMNKDGVL 338
Query: 224 FSDGM-YVTRQQLE 236
SDG ++TR+ L+
Sbjct: 339 ISDGQGFMTREFLK 352
>ZFIN|ZDB-GENE-980526-36 [details] [associations]
symbol:rxrga "retinoid x receptor, gamma a"
species:7955 "Danio rerio" [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0004886 "9-cis
retinoic acid receptor activity" evidence=IDA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-980526-36 GO:GO:0005634
GO:GO:0046872 eggNOG:NOG327099 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 HOVERGEN:HBG005606 HOGENOM:HOG000260821 GO:GO:0004886
InterPro:IPR021780 Pfam:PF11825 KO:K08524 EMBL:U29940 EMBL:BC059576
IPI:IPI00511229 PIR:I50515 RefSeq:NP_571292.2 UniGene:Dr.348
ProteinModelPortal:Q90416 SMR:Q90416 STRING:Q90416 GeneID:30464
KEGG:dre:30464 CTD:30464 OrthoDB:EOG42RD7K NextBio:20806858
ArrayExpress:Q90416 Uniprot:Q90416
Length = 441
Score = 192 (72.6 bits), Expect = 5.2e-23, Sum P(2) = 5.2e-23
Identities = 40/81 (49%), Positives = 57/81 (70%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K C + + RNRCQYCR++KCLA+GM R++V+ R +R
Sbjct: 138 KGFFKRTIRKDLTYTC-RDNKDCQIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRG 194
Query: 62 RERSDSETGSTRVSTTGAEPP 82
RERSD+E S+ S+ E P
Sbjct: 195 RERSDNEVDSS--SSFNEEMP 213
Score = 102 (41.0 bits), Expect = 5.2e-23, Sum P(2) = 5.2e-23
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F DL DDQ+IL++ G+ EL I S +T + + G++V R
Sbjct: 258 LVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHR 313
>WB|WBGene00003675 [details] [associations]
symbol:nhr-85 species:6239 "Caenorhabditis elegans"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0043053 "dauer entry"
evidence=IMP] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 GO:GO:0043053 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351
GeneTree:ENSGT00700000104109 EMBL:AY204180 EMBL:AY204181
EMBL:AL110478 EMBL:Z82071 PIR:T26189 RefSeq:NP_001021667.1
RefSeq:NP_001021668.1 UniGene:Cel.18400 ProteinModelPortal:Q9XUK7
SMR:Q9XUK7 STRING:Q9XUK7 EnsemblMetazoa:W05B5.3a GeneID:191732
KEGG:cel:CELE_W05B5.3 UCSC:W05B5.3b.2 CTD:191732 WormBase:W05B5.3a
WormBase:W05B5.3b eggNOG:NOG290272 InParanoid:Q9XUK7 OMA:ERHQSIA
NextBio:950134 Uniprot:Q9XUK7
Length = 514
Score = 242 (90.2 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 47/75 (62%), Positives = 56/75 (74%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ++I YR C R CL++R NRNRCQ CR KKCLAVGMSRD+VR+GRVPKR
Sbjct: 134 KGFFRRSIQQKITYRACTRAEDCLILRNNRNRCQCCRLKKCLAVGMSRDAVRFGRVPKRE 193
Query: 62 RERSDSETGSTRVST 76
+ R E T V +
Sbjct: 194 KARMFEEMQKTNVQS 208
Score = 52 (23.4 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 12/56 (21%), Positives = 30/56 (53%)
Query: 172 VTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDG 227
V P ++ ++FA +P F ++Q ++ L++ F++ + ++ + +S F G
Sbjct: 258 VIP-LKAAIDFANSIPAFLSITQTQRVHLLQNSVFDVML--LASASASTSQHFPPG 310
>UNIPROTKB|P18117 [details] [associations]
symbol:thrb-a "Thyroid hormone receptor beta-A"
species:8355 "Xenopus laevis" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0004887 "thyroid hormone receptor activity" evidence=IC;TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0043565 "sequence-specific
DNA binding" evidence=IDA;IPI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] [GO:0070324 "thyroid
hormone binding" evidence=IDA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR001728
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0000122 GO:GO:0070324 GO:GO:0004887 HOVERGEN:HBG005606
EMBL:M35360 EMBL:M35359 PIR:C36067 RefSeq:NP_001090182.1
RefSeq:NP_001090533.1 UniGene:Xl.474 UniGene:Xl.60293
ProteinModelPortal:P18117 SMR:P18117 GeneID:779054 GeneID:780755
KEGG:xla:779054 KEGG:xla:780755 CTD:7068 CTD:779054
Xenbase:XB-GENE-6070716 KO:K08362 Uniprot:P18117
Length = 373
Score = 164 (62.8 bits), Expect = 7.5e-23, Sum P(2) = 7.5e-23
Identities = 29/52 (55%), Positives = 40/52 (76%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV 52
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+AVGM+ D V
Sbjct: 40 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLV 91
Score = 127 (49.8 bits), Expect = 7.5e-23, Sum P(2) = 7.5e-23
Identities = 30/74 (40%), Positives = 47/74 (63%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ QF +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +L
Sbjct: 181 FSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 240
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 241 TLNGEMAVTRGQLK 254
>UNIPROTKB|P15204 [details] [associations]
symbol:thra-a "Thyroid hormone receptor alpha-A"
species:8355 "Xenopus laevis" [GO:0004887 "thyroid hormone receptor
activity" evidence=IDA;TAS] [GO:0042803 "protein homodimerization
activity" evidence=IDA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA;IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0046965 "retinoid X
receptor binding" evidence=IPI] [GO:0046966 "thyroid hormone
receptor binding" evidence=IPI] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] [GO:0070324 "thyroid
hormone binding" evidence=IDA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR001728
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0045893 GO:GO:0042803 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0070324 GO:GO:0004887 HOVERGEN:HBG005606
EMBL:M35343 EMBL:X17385 EMBL:BC170071 EMBL:BC170077 PIR:S09605
RefSeq:NP_001081595.1 UniGene:Xl.309 ProteinModelPortal:P15204
GeneID:397942 KEGG:xla:397942 CTD:7067 Xenbase:XB-GENE-5966552
KO:K05547 Uniprot:P15204
Length = 418
Score = 170 (64.9 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 40/91 (43%), Positives = 51/91 (56%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYG--RVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 82 KGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 141
Query: 59 KRS--RERSDSETGSTRVSTTGAEP-PSSLE 86
KR E + T P PSS E
Sbjct: 142 KRKLIEENRQRRRKEEMIKTLQQRPEPSSEE 172
Score = 121 (47.7 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ +F +TP++ RVV+FAK++P F +L+ +DQ+IL+K E+ + R DS +L
Sbjct: 223 FSEFTKIITPAITRVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSETL 282
Query: 223 TFSDGMYVTRQQLE 236
T S M V R+QL+
Sbjct: 283 TLSGEMAVKREQLK 296
>ZFIN|ZDB-GENE-990415-243 [details] [associations]
symbol:rxrab "retinoid x receptor, alpha b"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043401 "steroid hormone mediated signaling pathway"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0004886 "9-cis retinoic acid receptor activity"
evidence=ISS;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000003 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 ZFIN:ZDB-GENE-990415-243 GO:GO:0005634 GO:GO:0046872
eggNOG:NOG327099 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
HOVERGEN:HBG005606 EMBL:U29894 IPI:IPI00481196 PIR:I50514
RefSeq:NP_571228.1 UniGene:Dr.624 ProteinModelPortal:Q90415
SMR:Q90415 STRING:Q90415 GeneID:793011 KEGG:dre:793011 CTD:793011
HOGENOM:HOG000260821 InParanoid:Q90415 OrthoDB:EOG4SJ5DV
NextBio:20931280 ArrayExpress:Q90415 GO:GO:0004886
InterPro:IPR021780 Pfam:PF11825 Uniprot:Q90415
Length = 379
Score = 188 (71.2 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 34/69 (49%), Positives = 54/69 (78%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+++K + Y C RD K C++ + RNRCQYCR++KCLA+GM R++V+ R +R+
Sbjct: 75 KGFFKRTVRKDLTYTC-RDNKDCMIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRA 131
Query: 62 RERSDSETG 70
+ERS++E G
Sbjct: 132 KERSEAEFG 140
Score = 98 (39.6 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F DL DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 196 LVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHR 251
>ZFIN|ZDB-GENE-990415-268 [details] [associations]
symbol:thrb "thyroid hormone receptor beta"
species:7955 "Danio rerio" [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA;IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0000988 "protein binding
transcription factor activity" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-990415-268 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887
GO:GO:0000988 EMBL:BX927163 GeneTree:ENSGT00680000099662
EMBL:CR382334 EMBL:CU207349 ProteinModelPortal:G1K2F9
Ensembl:ENSDART00000019247 Bgee:G1K2F9 Uniprot:G1K2F9
Length = 470
Score = 164 (62.8 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 29/52 (55%), Positives = 40/52 (76%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV 52
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+AVGM+ D V
Sbjct: 23 KGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLV 74
Score = 127 (49.8 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 30/74 (40%), Positives = 47/74 (63%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ QF +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +L
Sbjct: 291 FSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTL 350
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 351 TLNGEMAVTRGQLK 364
>ZFIN|ZDB-GENE-040718-34 [details] [associations]
symbol:rxrgb "retinoid X receptor, gamma b"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043401 "steroid hormone mediated signaling pathway"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000003 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 ZFIN:ZDB-GENE-040718-34 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351
GeneTree:ENSGT00690000101777 InterPro:IPR021780 Pfam:PF11825
EMBL:BX296562 IPI:IPI00972012 Ensembl:ENSDART00000110950
Bgee:F1QDD2 Uniprot:F1QDD2
Length = 458
Score = 187 (70.9 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 36/71 (50%), Positives = 54/71 (76%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K CL+ + RNRCQYCR++KCLA+GM R++V+ R +R
Sbjct: 154 KGFFKRTIRKDLTYTC-RDIKECLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRG 210
Query: 62 RERSDSETGST 72
+E+SD+E +T
Sbjct: 211 KEKSDTEVETT 221
Score = 102 (41.0 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F DL DDQ+IL++ G+ EL I S +T + G++V R
Sbjct: 274 LVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSITVKDGILLGTGLHVHR 329
>UNIPROTKB|P18115 [details] [associations]
symbol:thra-b "Thyroid hormone receptor alpha-B"
species:8355 "Xenopus laevis" [GO:0004887 "thyroid hormone receptor
activity" evidence=TAS] [GO:0042803 "protein homodimerization
activity" evidence=IDA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0046965 "retinoid X receptor
binding" evidence=IPI] [GO:0046982 "protein heterodimerization
activity" evidence=IPI] [GO:0070324 "thyroid hormone binding"
evidence=IDA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0045893
GO:GO:0042803 GO:GO:0046872 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0070324 GO:GO:0004887 HOVERGEN:HBG005606 EMBL:M35344
EMBL:L76285 PIR:B36067 ProteinModelPortal:P18115 SMR:P18115
Uniprot:P18115
Length = 418
Score = 167 (63.8 bits), Expect = 2.5e-22, Sum P(2) = 2.5e-22
Identities = 40/91 (43%), Positives = 51/91 (56%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYG--RVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 82 KGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 141
Query: 59 KRS--RERSDSETGSTRVSTTGAEP-PSSLE 86
KR E + T P PSS E
Sbjct: 142 KRKLIEENRVRRRKEEMIKTLQQRPEPSSEE 172
Score = 121 (47.7 bits), Expect = 2.5e-22, Sum P(2) = 2.5e-22
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ +F +TP++ RVV+FAK++P F +L+ +DQ+IL+K E+ + R DS +L
Sbjct: 223 FSEFTKIITPAITRVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSETL 282
Query: 223 TFSDGMYVTRQQLE 236
T S M V R+QL+
Sbjct: 283 TLSGEMAVKREQLK 296
>UNIPROTKB|P28701 [details] [associations]
symbol:RXRG "Retinoic acid receptor RXR-gamma" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004886 "9-cis retinoic
acid receptor activity" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
eggNOG:NOG327099 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
HOVERGEN:HBG005606 HOGENOM:HOG000260821 GO:GO:0004886
InterPro:IPR021780 Pfam:PF11825 OrthoDB:EOG42RD7K CTD:6258
KO:K08526 EMBL:X58997 EMBL:S72435 IPI:IPI00584417 IPI:IPI00600229
PIR:A43781 PIR:S46479 RefSeq:NP_990625.1 UniGene:Gga.717
ProteinModelPortal:P28701 SMR:P28701 STRING:P28701 GeneID:396231
KEGG:gga:396231 InParanoid:P28701 NextBio:20816283 Uniprot:P28701
Length = 467
Score = 191 (72.3 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 38/71 (53%), Positives = 54/71 (76%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K CL+ + RNRCQYCR++KCLA+GM R++V+ R + S
Sbjct: 164 KGFFKRTIRKDLIYTC-RDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QGS 220
Query: 62 RERSDSETGST 72
RERS++E ST
Sbjct: 221 RERSENEAEST 231
Score = 97 (39.2 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 284 LVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 339
>UNIPROTKB|P57797 [details] [associations]
symbol:PPARG "Peroxisome proliferator-activated receptor
gamma" species:10029 "Cricetulus griseus" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0030374 "ligand-dependent nuclear receptor
transcription coactivator activity" evidence=ISS] [GO:0032526
"response to retinoic acid" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003077
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01291
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0032526 GO:GO:0030522 GO:GO:0030374 HOVERGEN:HBG106004
CTD:5468 InterPro:IPR022590 Pfam:PF12577 EMBL:Z30972 PIR:JC4264
RefSeq:NP_001231210.1 ProteinModelPortal:P57797 SMR:P57797
PRIDE:P57797 GeneID:100689245 Uniprot:P57797
Length = 475
Score = 184 (69.8 bits), Expect = 3.4e-22, Sum P(2) = 3.4e-22
Identities = 34/70 (48%), Positives = 53/70 (75%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS 71
+E+ +E S
Sbjct: 188 KEKLLAEISS 197
Score = 104 (41.7 bits), Expect = 3.4e-22, Sum P(2) = 3.4e-22
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 290 AVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 349
Query: 234 QLE 236
L+
Sbjct: 350 FLK 352
>ZFIN|ZDB-GENE-060613-1 [details] [associations]
symbol:thrab "thyroid hormone receptor alpha b"
species:7955 "Danio rerio" [GO:0048384 "retinoic acid receptor
signaling pathway" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0003708 "retinoic acid receptor
activity" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR001728 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 ZFIN:ZDB-GENE-060613-1 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887
GeneTree:ENSGT00680000099662 EMBL:BX510316 IPI:IPI00897050
Ensembl:ENSDART00000074549 Uniprot:F1QME0
Length = 391
Score = 170 (64.9 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 40/91 (43%), Positives = 52/91 (57%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYG--RVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 55 KGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 114
Query: 59 KRS--RERSDSETGSTRVSTTGAEP-PSSLE 86
KR E + V T P P+S E
Sbjct: 115 KRRLIEENREKRKKEEMVKTLQNRPEPTSSE 145
Score = 115 (45.5 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ +F +TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +L
Sbjct: 196 FSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 255
Query: 223 TFSDGMYVTRQQLE 236
T S M V R+QL+
Sbjct: 256 TLSGEMAVKREQLK 269
>UNIPROTKB|O62807 [details] [associations]
symbol:PPARG "Peroxisome proliferator-activated receptor
gamma" species:9823 "Sus scrofa" [GO:0050872 "white fat cell
differentiation" evidence=ISS] [GO:0045600 "positive regulation of
fat cell differentiation" evidence=ISS] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0030374 "ligand-dependent nuclear receptor
transcription coactivator activity" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0032526 "response to retinoic acid"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0071285
"cellular response to lithium ion" evidence=IEA] [GO:0060336
"negative regulation of interferon-gamma-mediated signaling
pathway" evidence=IEA] [GO:0055098 "response to low-density
lipoprotein particle stimulus" evidence=IEA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0050873 "brown fat cell
differentiation" evidence=IEA] [GO:0048662 "negative regulation of
smooth muscle cell proliferation" evidence=IEA] [GO:0048469 "cell
maturation" evidence=IEA] [GO:0046965 "retinoid X receptor binding"
evidence=IEA] [GO:0045713 "low-density lipoprotein particle
receptor biosynthetic process" evidence=IEA] [GO:0045165 "cell fate
commitment" evidence=IEA] [GO:0042953 "lipoprotein transport"
evidence=IEA] [GO:0042593 "glucose homeostasis" evidence=IEA]
[GO:0035357 "peroxisome proliferator activated receptor signaling
pathway" evidence=IEA] [GO:0033613 "activating transcription factor
binding" evidence=IEA] [GO:0032869 "cellular response to insulin
stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0030224 "monocyte
differentiation" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0015909 "long-chain fatty acid transport"
evidence=IEA] [GO:0010891 "negative regulation of sequestering of
triglyceride" evidence=IEA] [GO:0010887 "negative regulation of
cholesterol storage" evidence=IEA] [GO:0010871 "negative regulation
of receptor biosynthetic process" evidence=IEA] [GO:0008217
"regulation of blood pressure" evidence=IEA] [GO:0008144 "drug
binding" evidence=IEA] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0006917 "induction of apoptosis" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001890 "placenta development" evidence=IEA]
[GO:0001012 "RNA polymerase II regulatory region DNA binding"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003074
InterPro:IPR003077 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PRINTS:PR01291 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005829 GO:GO:0005634
GO:GO:0008285 GO:GO:0051091 GO:GO:0006917 GO:GO:0032869
GO:GO:0046872 GO:GO:0003677 GO:GO:0008144 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0050873
GO:GO:0050872 GO:GO:0045600 GO:GO:0003682 GO:GO:0042593
GO:GO:0010887 GO:GO:0055098 GO:GO:0042953 GO:GO:0000122
GO:GO:0010891 GO:GO:0006919 GO:GO:0032526 GO:GO:0008217
GO:GO:0001890 GO:GO:0001012 GO:GO:0045165 GO:GO:0030374
GO:GO:0030855 GO:GO:0048469 GO:GO:0030224 GO:GO:0071285
GO:GO:0015909 eggNOG:NOG266867 GeneTree:ENSGT00700000104361
GO:GO:0060336 GO:GO:0010871 HOGENOM:HOG000261626 HOVERGEN:HBG106004
CTD:5468 KO:K08530 OMA:KTTDKSP GO:GO:0045713 InterPro:IPR022590
Pfam:PF12577 EMBL:AF059245 EMBL:AF103946 EMBL:AJ006756
EMBL:AJ006757 EMBL:AB097930 PIR:JE0280 RefSeq:NP_999544.1
UniGene:Ssc.14475 ProteinModelPortal:O62807 SMR:O62807
STRING:O62807 Ensembl:ENSSSCT00000012672 GeneID:397671
KEGG:ssc:397671 ArrayExpress:O62807 Uniprot:O62807
Length = 504
Score = 184 (69.8 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 34/70 (48%), Positives = 53/70 (75%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 159 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 216
Query: 62 RERSDSETGS 71
+E+ +E S
Sbjct: 217 KEKLLAEISS 226
Score = 104 (41.7 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 319 AVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 378
Query: 234 QLE 236
L+
Sbjct: 379 FLK 381
>UNIPROTKB|O19052 [details] [associations]
symbol:PPARG "Peroxisome proliferator-activated receptor
gamma" species:9986 "Oryctolagus cuniculus" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0030374 "ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISS]
[GO:0032526 "response to retinoic acid" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISS] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003077
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01291
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0032526 GO:GO:0030522 GO:GO:0030374 eggNOG:NOG266867
HOGENOM:HOG000261626 HOVERGEN:HBG106004 InterPro:IPR022590
Pfam:PF12577 OrthoDB:EOG41ZF9W EMBL:U84893 UniGene:Ocu.2191
ProteinModelPortal:O19052 SMR:O19052 STRING:O19052 Uniprot:O19052
Length = 475
Score = 184 (69.8 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 34/70 (48%), Positives = 53/70 (75%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 130 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 187
Query: 62 RERSDSETGS 71
+E+ +E S
Sbjct: 188 KEKLLAEISS 197
Score = 103 (41.3 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 290 AVQEITEYAKNIPGFVSLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 349
Query: 234 QLE 236
L+
Sbjct: 350 FLK 352
>UNIPROTKB|O18971 [details] [associations]
symbol:PPARG "Peroxisome proliferator-activated receptor
gamma" species:9913 "Bos taurus" [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0045165 "cell fate commitment" evidence=ISS]
[GO:0030855 "epithelial cell differentiation" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0045598 "regulation of
fat cell differentiation" evidence=ISS] [GO:0050872 "white fat cell
differentiation" evidence=ISS] [GO:0045600 "positive regulation of
fat cell differentiation" evidence=ISS] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0032526 "response to retinoic acid" evidence=ISS] [GO:0071285
"cellular response to lithium ion" evidence=IEA] [GO:0060336
"negative regulation of interferon-gamma-mediated signaling
pathway" evidence=IEA] [GO:0055098 "response to low-density
lipoprotein particle stimulus" evidence=IEA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0050873 "brown fat cell
differentiation" evidence=IEA] [GO:0048662 "negative regulation of
smooth muscle cell proliferation" evidence=IEA] [GO:0048469 "cell
maturation" evidence=IEA] [GO:0046965 "retinoid X receptor binding"
evidence=IEA] [GO:0045713 "low-density lipoprotein particle
receptor biosynthetic process" evidence=IEA] [GO:0042953
"lipoprotein transport" evidence=IEA] [GO:0042593 "glucose
homeostasis" evidence=IEA] [GO:0035357 "peroxisome proliferator
activated receptor signaling pathway" evidence=IEA] [GO:0033613
"activating transcription factor binding" evidence=IEA] [GO:0032869
"cellular response to insulin stimulus" evidence=IEA] [GO:0030224
"monocyte differentiation" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0015909 "long-chain fatty acid
transport" evidence=IEA] [GO:0010891 "negative regulation of
sequestering of triglyceride" evidence=IEA] [GO:0010887 "negative
regulation of cholesterol storage" evidence=IEA] [GO:0010871
"negative regulation of receptor biosynthetic process"
evidence=IEA] [GO:0008217 "regulation of blood pressure"
evidence=IEA] [GO:0008144 "drug binding" evidence=IEA] [GO:0006919
"activation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=IEA] [GO:0006917 "induction of
apoptosis" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0001890 "placenta
development" evidence=IEA] [GO:0001012 "RNA polymerase II
regulatory region DNA binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003074 InterPro:IPR003077 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01291 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005829
GO:GO:0005634 GO:GO:0045892 GO:GO:0008285 GO:GO:0051091
GO:GO:0006917 GO:GO:0032869 GO:GO:0046872 GO:GO:0003677
GO:GO:0008144 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0050873 GO:GO:0050872 GO:GO:0003700
GO:GO:0045600 GO:GO:0003682 GO:GO:0042593 GO:GO:0010887
GO:GO:0055098 GO:GO:0042953 GO:GO:0000122 GO:GO:0010891
GO:GO:0006919 GO:GO:0032526 GO:GO:0008217 GO:GO:0001890
GO:GO:0001012 GO:GO:0045165 GO:GO:0030374 GO:GO:0030855
GO:GO:0048469 GO:GO:0030224 GO:GO:0071285 GO:GO:0015909
eggNOG:NOG266867 GeneTree:ENSGT00700000104361 GO:GO:0060336
GO:GO:0010871 HOGENOM:HOG000261626 HOVERGEN:HBG106004 EMBL:Y12420
EMBL:Y12419 EMBL:AY179866 EMBL:BC116098 IPI:IPI00693988
IPI:IPI00701013 PIR:JC5777 RefSeq:NP_851367.1 UniGene:Bt.3862
ProteinModelPortal:O18971 SMR:O18971 STRING:O18971 PRIDE:O18971
Ensembl:ENSBTAT00000001760 Ensembl:ENSBTAT00000044038
Ensembl:ENSBTAT00000044042 GeneID:281993 KEGG:bta:281993 CTD:5468
InParanoid:O18971 KO:K08530 OMA:KTTDKSP NextBio:20805861
GO:GO:0045713 InterPro:IPR022590 Pfam:PF12577 Uniprot:O18971
Length = 505
Score = 184 (69.8 bits), Expect = 4.4e-22, Sum P(2) = 4.4e-22
Identities = 34/70 (48%), Positives = 53/70 (75%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS 71
+E+ +E S
Sbjct: 218 KEKLLAEISS 227
Score = 104 (41.7 bits), Expect = 4.4e-22, Sum P(2) = 4.4e-22
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 320 AVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 379
Query: 234 QLE 236
L+
Sbjct: 380 FLK 382
>MGI|MGI:97747 [details] [associations]
symbol:Pparg "peroxisome proliferator activated receptor
gamma" species:10090 "Mus musculus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=ISO;IDA] [GO:0001012 "RNA polymerase II regulatory region
DNA binding" evidence=IDA] [GO:0001818 "negative regulation of
cytokine production" evidence=IMP] [GO:0001890 "placenta
development" evidence=IMP] [GO:0002674 "negative regulation of
acute inflammatory response" evidence=ISO] [GO:0003677 "DNA
binding" evidence=ISO;IDA;IPI] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO;IDA] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=ISO;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005829
"cytosol" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006917 "induction
of apoptosis" evidence=ISO] [GO:0006919 "activation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=ISO] [GO:0006954 "inflammatory response" evidence=TAS]
[GO:0007165 "signal transduction" evidence=ISO] [GO:0008144 "drug
binding" evidence=ISO] [GO:0008217 "regulation of blood pressure"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=ISO;IMP] [GO:0010745 "negative regulation of macrophage
derived foam cell differentiation" evidence=ISO] [GO:0010871
"negative regulation of receptor biosynthetic process"
evidence=ISO] [GO:0010887 "negative regulation of cholesterol
storage" evidence=ISO] [GO:0010891 "negative regulation of
sequestering of triglyceride" evidence=ISO] [GO:0015909 "long-chain
fatty acid transport" evidence=IMP] [GO:0019216 "regulation of
lipid metabolic process" evidence=ISO] [GO:0019395 "fatty acid
oxidation" evidence=ISO] [GO:0019899 "enzyme binding" evidence=ISO]
[GO:0030224 "monocyte differentiation" evidence=ISO] [GO:0030308
"negative regulation of cell growth" evidence=ISO] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISO;IDA] [GO:0030522 "intracellular receptor
mediated signaling pathway" evidence=TAS] [GO:0030855 "epithelial
cell differentiation" evidence=IGI] [GO:0032526 "response to
retinoic acid" evidence=ISO;IDA] [GO:0032869 "cellular response to
insulin stimulus" evidence=ISO] [GO:0033613 "activating
transcription factor binding" evidence=ISO] [GO:0033993 "response
to lipid" evidence=IDA] [GO:0035357 "peroxisome proliferator
activated receptor signaling pathway" evidence=ISO] [GO:0042593
"glucose homeostasis" evidence=ISO] [GO:0042953 "lipoprotein
transport" evidence=ISO] [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0044212 "transcription regulatory region
DNA binding" evidence=ISO;IDA] [GO:0045165 "cell fate commitment"
evidence=IGI] [GO:0045444 "fat cell differentiation"
evidence=IGI;IDA] [GO:0045598 "regulation of fat cell
differentiation" evidence=ISO;IGI;IDA] [GO:0045600 "positive
regulation of fat cell differentiation" evidence=IGI;IMP;IDA]
[GO:0045713 "low-density lipoprotein particle receptor biosynthetic
process" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA;IMP] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;IDA] [GO:0046321 "positive
regulation of fatty acid oxidation" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0046965 "retinoid X receptor
binding" evidence=ISO] [GO:0048469 "cell maturation" evidence=ISO]
[GO:0048662 "negative regulation of smooth muscle cell
proliferation" evidence=ISO] [GO:0048714 "positive regulation of
oligodendrocyte differentiation" evidence=ISO] [GO:0050544
"arachidonic acid binding" evidence=IDA] [GO:0050872 "white fat
cell differentiation" evidence=IDA] [GO:0050873 "brown fat cell
differentiation" evidence=IDA] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0051974 "negative regulation of telomerase
activity" evidence=ISO] [GO:0055098 "response to low-density
lipoprotein particle stimulus" evidence=ISO] [GO:0060336 "negative
regulation of interferon-gamma-mediated signaling pathway"
evidence=ISO] [GO:0071285 "cellular response to lithium ion"
evidence=IDA] [GO:0071407 "cellular response to organic cyclic
compound" evidence=IDA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003077
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01291
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
MGI:MGI:97747 GO:GO:0005829 GO:GO:0008285 GO:GO:0005654
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0006954 GO:GO:0045944 GO:GO:0050873 GO:GO:0050872
GO:GO:0045600 GO:GO:0003682 GO:GO:0000122 Reactome:REACT_127416
GO:GO:0032526 GO:GO:0001890 GO:GO:0001012 GO:GO:0050544
GO:GO:0071407 GO:GO:0045165 GO:GO:0030374 GO:GO:0030855
GO:GO:0071285 Reactome:REACT_27166 GO:GO:0015909 eggNOG:NOG266867
GeneTree:ENSGT00700000104361 GO:GO:0001818 HOGENOM:HOG000261626
HOVERGEN:HBG106004 CTD:5468 KO:K08530 InterPro:IPR022590
Pfam:PF12577 OrthoDB:EOG41ZF9W EMBL:U09138 EMBL:U01664 EMBL:U01841
EMBL:U10374 IPI:IPI00125193 IPI:IPI00266075 PIR:A54101
RefSeq:NP_001120802.1 RefSeq:NP_035276.2 UniGene:Mm.3020
ProteinModelPortal:P37238 SMR:P37238 IntAct:P37238 STRING:P37238
PhosphoSite:P37238 PRIDE:P37238 Ensembl:ENSMUST00000171644
GeneID:19016 KEGG:mmu:19016 UCSC:uc012eqj.1 InParanoid:P37238
BindingDB:P37238 ChEMBL:CHEMBL2459 NextBio:295444 Bgee:P37238
CleanEx:MM_PPARG Genevestigator:P37238
GermOnline:ENSMUSG00000000440 Uniprot:P37238
Length = 505
Score = 184 (69.8 bits), Expect = 4.4e-22, Sum P(2) = 4.4e-22
Identities = 34/70 (48%), Positives = 53/70 (75%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS 71
+E+ +E S
Sbjct: 218 KEKLLAEISS 227
Score = 104 (41.7 bits), Expect = 4.4e-22, Sum P(2) = 4.4e-22
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 320 AVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 379
Query: 234 QLE 236
L+
Sbjct: 380 FLK 382
>RGD|3371 [details] [associations]
symbol:Pparg "peroxisome proliferator-activated receptor gamma"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0001012 "RNA polymerase II regulatory region DNA binding"
evidence=IEA;ISO] [GO:0001818 "negative regulation of cytokine
production" evidence=ISO] [GO:0001890 "placenta development"
evidence=IEA;ISO] [GO:0002674 "negative regulation of acute
inflammatory response" evidence=IMP] [GO:0003677 "DNA binding"
evidence=ISO;IDA] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISO;IDA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription factor
activity" evidence=IEA;ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005829
"cytosol" evidence=ISO;IDA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEP] [GO:0006631 "fatty
acid metabolic process" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=IEA;ISO] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process"
evidence=IEA;ISO] [GO:0007165 "signal transduction" evidence=ISO]
[GO:0007507 "heart development" evidence=IEP] [GO:0008144 "drug
binding" evidence=IEA;ISO] [GO:0008217 "regulation of blood pressure"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=ISO;IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0010033 "response to organic substance" evidence=IEP] [GO:0010745
"negative regulation of macrophage derived foam cell differentiation"
evidence=ISO] [GO:0010871 "negative regulation of receptor
biosynthetic process" evidence=IEA;ISO] [GO:0010887 "negative
regulation of cholesterol storage" evidence=IEA;ISO] [GO:0010891
"negative regulation of sequestering of triglyceride"
evidence=IEA;ISO] [GO:0014070 "response to organic cyclic compound"
evidence=IEP] [GO:0015909 "long-chain fatty acid transport"
evidence=IEA;ISO] [GO:0019216 "regulation of lipid metabolic process"
evidence=IMP] [GO:0019395 "fatty acid oxidation" evidence=IMP]
[GO:0019899 "enzyme binding" evidence=IEA;ISO] [GO:0030224 "monocyte
differentiation" evidence=IEA;ISO] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0030374 "ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISO;ISS]
[GO:0030855 "epithelial cell differentiation" evidence=IEA;ISO]
[GO:0031000 "response to caffeine" evidence=IEP] [GO:0031100 "organ
regeneration" evidence=IEP] [GO:0032526 "response to retinoic acid"
evidence=ISO;ISS] [GO:0032869 "cellular response to insulin stimulus"
evidence=IEA;ISO] [GO:0033189 "response to vitamin A" evidence=IEP]
[GO:0033613 "activating transcription factor binding"
evidence=IEA;ISO] [GO:0033993 "response to lipid" evidence=ISO]
[GO:0035357 "peroxisome proliferator activated receptor signaling
pathway" evidence=IEA;ISO] [GO:0042493 "response to drug"
evidence=IEP] [GO:0042593 "glucose homeostasis" evidence=IEA;ISO]
[GO:0042953 "lipoprotein transport" evidence=IEA;ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IEA;ISO] [GO:0043627
"response to estrogen stimulus" evidence=IEP] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO;IDA]
[GO:0045165 "cell fate commitment" evidence=IEA;ISO] [GO:0045444 "fat
cell differentiation" evidence=ISO] [GO:0045598 "regulation of fat
cell differentiation" evidence=ISO;IDA] [GO:0045600 "positive
regulation of fat cell differentiation" evidence=ISO;ISS] [GO:0045713
"low-density lipoprotein particle receptor biosynthetic process"
evidence=IEA;ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO;IDA] [GO:0046321 "positive regulation of fatty acid
oxidation" evidence=IMP] [GO:0046965 "retinoid X receptor binding"
evidence=IEA;ISO] [GO:0048469 "cell maturation" evidence=IEA;ISO]
[GO:0048662 "negative regulation of smooth muscle cell proliferation"
evidence=IEA;ISO] [GO:0048714 "positive regulation of oligodendrocyte
differentiation" evidence=IMP] [GO:0050544 "arachidonic acid binding"
evidence=ISO] [GO:0050872 "white fat cell differentiation"
evidence=ISO;ISS] [GO:0050873 "brown fat cell differentiation"
evidence=IEA;ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISO] [GO:0051974 "negative regulation of telomerase
activity" evidence=IMP] [GO:0055098 "response to low-density
lipoprotein particle stimulus" evidence=IEA;ISO] [GO:0060336
"negative regulation of interferon-gamma-mediated signaling pathway"
evidence=IEA;ISO] [GO:0071285 "cellular response to lithium ion"
evidence=IEA;ISO] [GO:0071407 "cellular response to organic cyclic
compound" evidence=ISO] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003077
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01291
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430 RGD:3371
GO:GO:0005829 GO:GO:0005634 GO:GO:0008285 GO:GO:0007507 GO:GO:0051091
GO:GO:0006917 GO:GO:0030308 GO:GO:0032869 GO:GO:0042493 GO:GO:0046872
GO:GO:0008144 GO:GO:0031100 GO:GO:0009409 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0050873 GO:GO:0002674
GO:GO:0031000 GO:GO:0050872 GO:GO:0003700 GO:GO:0045600 GO:GO:0003682
GO:GO:0019395 GO:GO:0042593 GO:GO:0046321 GO:GO:0010887 GO:GO:0055098
GO:GO:0042953 GO:GO:0000122 GO:GO:0010891 GO:GO:0044212 GO:GO:0006919
GO:GO:0032526 GO:GO:0008217 GO:GO:0048714 GO:GO:0043627 GO:GO:0001890
GO:GO:0001012 GO:GO:0033189 GO:GO:0045165 GO:GO:0030374 GO:GO:0030855
GO:GO:0048469 GO:GO:0030224 GO:GO:0071285 GO:GO:0015909
eggNOG:NOG266867 GeneTree:ENSGT00700000104361 GO:GO:0060336
GO:GO:0051974 GO:GO:0010871 HOGENOM:HOG000261626 HOVERGEN:HBG106004
CTD:5468 KO:K08530 OMA:KTTDKSP GO:GO:0045713 InterPro:IPR022590
Pfam:PF12577 EMBL:AF156666 EMBL:AF156665 EMBL:AB019561 EMBL:Y12882
EMBL:AB011365 EMBL:AF246457 EMBL:AF246458 IPI:IPI00207539
IPI:IPI00231890 RefSeq:NP_001138838.1 RefSeq:NP_001138839.1
RefSeq:NP_037256.1 UniGene:Rn.23443 ProteinModelPortal:O88275
SMR:O88275 STRING:O88275 PhosphoSite:O88275
Ensembl:ENSRNOT00000012137 Ensembl:ENSRNOT00000051858 GeneID:25664
KEGG:rno:25664 UCSC:RGD:3371 InParanoid:O88275 BindingDB:O88275
ChEMBL:CHEMBL4797 NextBio:607577 Genevestigator:O88275
GermOnline:ENSRNOG00000008839 Uniprot:O88275
Length = 505
Score = 184 (69.8 bits), Expect = 4.4e-22, Sum P(2) = 4.4e-22
Identities = 34/70 (48%), Positives = 53/70 (75%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS 71
+E+ +E S
Sbjct: 218 KEKLLAEISS 227
Score = 104 (41.7 bits), Expect = 4.4e-22, Sum P(2) = 4.4e-22
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 320 AVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 379
Query: 234 QLE 236
L+
Sbjct: 380 FLK 382
>UNIPROTKB|P48443 [details] [associations]
symbol:RXRG "Retinoic acid receptor RXR-gamma" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0004886 "9-cis retinoic
acid receptor activity" evidence=IEA] [GO:0007422 "peripheral
nervous system development" evidence=IEA] [GO:0007507 "heart
development" evidence=IEA] [GO:0007519 "skeletal muscle tissue
development" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0031641 "regulation of myelination" evidence=IEA]
[GO:0032526 "response to retinoic acid" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] Reactome:REACT_71 InterPro:IPR000003
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430
Pathway_Interaction_DB:a6b1_a6b4_integrin_pathway GO:GO:0005654
GO:GO:0007507 GO:GO:0030182 GO:GO:0046872 eggNOG:NOG327099
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0007422
EMBL:CH471067 Pathway_Interaction_DB:rxr_vdr_pathway GO:GO:0032526
Pathway_Interaction_DB:retinoic_acid_pathway DrugBank:DB00755
DrugBank:DB00459 Pathway_Interaction_DB:ar_tf_pathway GO:GO:0006367
GO:GO:0007519 HOVERGEN:HBG005606 EMBL:AL160058 DrugBank:DB00523
DrugBank:DB00926 DrugBank:DB00210 HOGENOM:HOG000260821
GO:GO:0004886 InterPro:IPR021780 Pfam:PF11825 OrthoDB:EOG42RD7K
CTD:6258 KO:K08526 OMA:FMKFPTG EMBL:U38480 EMBL:CR456705
EMBL:BC012063 IPI:IPI00009736 RefSeq:NP_001243500.1
RefSeq:NP_008848.1 UniGene:Hs.26550 PDB:2GL8 PDBsum:2GL8
ProteinModelPortal:P48443 SMR:P48443 DIP:DIP-56220N IntAct:P48443
MINT:MINT-1378806 STRING:P48443 PhosphoSite:P48443 DMDM:1350913
PaxDb:P48443 PRIDE:P48443 DNASU:6258 Ensembl:ENST00000359842
GeneID:6258 KEGG:hsa:6258 UCSC:uc001gda.3 GeneCards:GC01M165370
HGNC:HGNC:10479 HPA:CAB002615 MIM:180247 neXtProt:NX_P48443
PharmGKB:PA34892 InParanoid:P48443 PhylomeDB:P48443
BindingDB:P48443 ChEMBL:CHEMBL2004 EvolutionaryTrace:P48443
GenomeRNAi:6258 NextBio:24303 ArrayExpress:P48443 Bgee:P48443
CleanEx:HS_RXRG Genevestigator:P48443 GermOnline:ENSG00000143171
Uniprot:P48443
Length = 463
Score = 189 (71.6 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 39/79 (49%), Positives = 57/79 (72%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K CL+ + RNRCQYCR++KCL +GM R++V+ R +RS
Sbjct: 160 KGFFKRTIRKDLIYTC-RDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRS 216
Query: 62 RERSDSETGSTRVSTTGAE 80
RER++SE +T+G E
Sbjct: 217 RERAESEA---ECATSGHE 232
Score = 97 (39.2 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 280 LVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>RGD|620046 [details] [associations]
symbol:Rxrg "retinoid X receptor gamma" species:10116 "Rattus
norvegicus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004886 "9-cis retinoic acid receptor activity"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0007422
"peripheral nervous system development" evidence=IEP] [GO:0007507
"heart development" evidence=IEP] [GO:0007519 "skeletal muscle
tissue development" evidence=IEP] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0014070 "response to organic cyclic compound"
evidence=IEP] [GO:0030182 "neuron differentiation" evidence=IEP]
[GO:0031641 "regulation of myelination" evidence=IDA] [GO:0032526
"response to retinoic acid" evidence=IEP] [GO:0032870 "cellular
response to hormone stimulus" evidence=IEP] [GO:0043565
"sequence-specific DNA binding" evidence=IEA;ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA;ISO] [GO:0048384 "retinoic acid receptor
signaling pathway" evidence=ISO] InterPro:IPR000003
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 RGD:620046
GO:GO:0005634 GO:GO:0007507 GO:GO:0030182 GO:GO:0046872
eggNOG:NOG327099 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0007422 GO:GO:0014070 GO:GO:0032526 GO:GO:0032870
GO:GO:0031641 GO:GO:0007519 HOVERGEN:HBG005606
GeneTree:ENSGT00690000101777 HSSP:P19793 HOGENOM:HOG000260821
GO:GO:0004886 InterPro:IPR021780 Pfam:PF11825 OrthoDB:EOG42RD7K
CTD:6258 KO:K08526 OMA:FMKFPTG EMBL:BC091363 IPI:IPI00363863
RefSeq:NP_113953.1 UniGene:Rn.40816 ProteinModelPortal:Q5BJR8
SMR:Q5BJR8 STRING:Q5BJR8 PhosphoSite:Q5BJR8
Ensembl:ENSRNOT00000006117 GeneID:83574 KEGG:rno:83574
UCSC:RGD:620046 InParanoid:Q5BJR8 BindingDB:Q5BJR8
ChEMBL:CHEMBL4277 NextBio:616077 ArrayExpress:Q5BJR8
Genevestigator:Q5BJR8 Uniprot:Q5BJR8
Length = 463
Score = 189 (71.6 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 39/79 (49%), Positives = 57/79 (72%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K CL+ + RNRCQYCR++KCL +GM R++V+ R +RS
Sbjct: 160 KGFFKRTIRKDLIYTC-RDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRS 216
Query: 62 RERSDSETGSTRVSTTGAE 80
RER++SE ++TG E
Sbjct: 217 RERAESEA---ECASTGHE 232
Score = 97 (39.2 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 280 LVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>UNIPROTKB|E9PFV2 [details] [associations]
symbol:PPARG "Peroxisome proliferator-activated receptor
gamma" species:9606 "Homo sapiens" [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003074 InterPro:IPR003077 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01291 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0030522 InterPro:IPR022590 Pfam:PF12577 EMBL:AC090947
EMBL:AC091492 EMBL:AC093174 HGNC:HGNC:9236 ChiTaRS:PPARG
IPI:IPI00791321 ProteinModelPortal:E9PFV2 SMR:E9PFV2 PRIDE:E9PFV2
Ensembl:ENST00000397026 ArrayExpress:E9PFV2 Bgee:E9PFV2
Uniprot:E9PFV2
Length = 483
Score = 184 (69.8 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 34/70 (48%), Positives = 53/70 (75%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 138 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 195
Query: 62 RERSDSETGS 71
+E+ +E S
Sbjct: 196 KEKLLAEISS 205
Score = 103 (41.3 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 298 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 357
Query: 234 QLE 236
L+
Sbjct: 358 FLK 360
>UNIPROTKB|Q4U3Q4 [details] [associations]
symbol:PPARG "Peroxisome proliferator-activated receptor
gamma" species:9615 "Canis lupus familiaris" [GO:0050872 "white fat
cell differentiation" evidence=ISS] [GO:0045600 "positive
regulation of fat cell differentiation" evidence=ISS] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0032526 "response to
retinoic acid" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0071285 "cellular response to lithium ion" evidence=IEA]
[GO:0060336 "negative regulation of interferon-gamma-mediated
signaling pathway" evidence=IEA] [GO:0055098 "response to
low-density lipoprotein particle stimulus" evidence=IEA]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0050873 "brown fat
cell differentiation" evidence=IEA] [GO:0048662 "negative
regulation of smooth muscle cell proliferation" evidence=IEA]
[GO:0048469 "cell maturation" evidence=IEA] [GO:0046965 "retinoid X
receptor binding" evidence=IEA] [GO:0045713 "low-density
lipoprotein particle receptor biosynthetic process" evidence=IEA]
[GO:0045165 "cell fate commitment" evidence=IEA] [GO:0042953
"lipoprotein transport" evidence=IEA] [GO:0042593 "glucose
homeostasis" evidence=IEA] [GO:0035357 "peroxisome proliferator
activated receptor signaling pathway" evidence=IEA] [GO:0033613
"activating transcription factor binding" evidence=IEA] [GO:0032869
"cellular response to insulin stimulus" evidence=IEA] [GO:0030855
"epithelial cell differentiation" evidence=IEA] [GO:0030224
"monocyte differentiation" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0015909 "long-chain fatty acid
transport" evidence=IEA] [GO:0010891 "negative regulation of
sequestering of triglyceride" evidence=IEA] [GO:0010887 "negative
regulation of cholesterol storage" evidence=IEA] [GO:0010871
"negative regulation of receptor biosynthetic process"
evidence=IEA] [GO:0008217 "regulation of blood pressure"
evidence=IEA] [GO:0008144 "drug binding" evidence=IEA] [GO:0006919
"activation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=IEA] [GO:0006917 "induction of
apoptosis" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0001890 "placenta
development" evidence=IEA] [GO:0001012 "RNA polymerase II
regulatory region DNA binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003074 InterPro:IPR003077 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01291 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005829
GO:GO:0005634 GO:GO:0008285 GO:GO:0051091 GO:GO:0006917
GO:GO:0032869 GO:GO:0046872 GO:GO:0003677 GO:GO:0008144
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0050873 GO:GO:0050872 GO:GO:0045600 GO:GO:0003682
GO:GO:0042593 GO:GO:0010887 GO:GO:0055098 GO:GO:0042953
GO:GO:0000122 GO:GO:0010891 GO:GO:0006919 GO:GO:0032526
GO:GO:0008217 GO:GO:0001890 GO:GO:0001012 GO:GO:0045165
GO:GO:0030374 GO:GO:0030855 GO:GO:0048469 GO:GO:0030224
GO:GO:0071285 GO:GO:0015909 eggNOG:NOG266867 GO:GO:0060336
GO:GO:0010871 HOGENOM:HOG000261626 HOVERGEN:HBG106004 CTD:5468
KO:K08530 GO:GO:0045713 InterPro:IPR022590 Pfam:PF12577
EMBL:DQ016141 RefSeq:NP_001019803.1 UniGene:Cfa.3467
ProteinModelPortal:Q4U3Q4 SMR:Q4U3Q4 STRING:Q4U3Q4 GeneID:403606
KEGG:cfa:403606 OrthoDB:EOG41ZF9W BindingDB:Q4U3Q4
ChEMBL:CHEMBL1932903 NextBio:20817111 Uniprot:Q4U3Q4
Length = 505
Score = 184 (69.8 bits), Expect = 5.6e-22, Sum P(2) = 5.6e-22
Identities = 34/70 (48%), Positives = 53/70 (75%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS 71
+E+ +E S
Sbjct: 218 KEKLLAEISS 227
Score = 103 (41.3 bits), Expect = 5.6e-22, Sum P(2) = 5.6e-22
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 320 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 379
Query: 234 QLE 236
L+
Sbjct: 380 FLK 382
>UNIPROTKB|P37231 [details] [associations]
symbol:PPARG "Peroxisome proliferator-activated receptor
gamma" species:9606 "Homo sapiens" [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0001012 "RNA polymerase II regulatory region DNA
binding" evidence=IEA] [GO:0002674 "negative regulation of acute
inflammatory response" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0007507 "heart development"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0019395 "fatty acid oxidation" evidence=IEA] [GO:0030308
"negative regulation of cell growth" evidence=IEA] [GO:0031000
"response to caffeine" evidence=IEA] [GO:0031100 "organ
regeneration" evidence=IEA] [GO:0033189 "response to vitamin A"
evidence=IEA] [GO:0042493 "response to drug" evidence=IEA]
[GO:0043627 "response to estrogen stimulus" evidence=IEA]
[GO:0046321 "positive regulation of fatty acid oxidation"
evidence=IEA] [GO:0048714 "positive regulation of oligodendrocyte
differentiation" evidence=IEA] [GO:0050873 "brown fat cell
differentiation" evidence=IEA] [GO:0051974 "negative regulation of
telomerase activity" evidence=IEA] [GO:0071285 "cellular response
to lithium ion" evidence=IEA] [GO:0050872 "white fat cell
differentiation" evidence=ISS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0032526 "response to retinoic acid" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP;IDA] [GO:0030374 "ligand-dependent nuclear
receptor transcription coactivator activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0007584 "response
to nutrient" evidence=TAS] [GO:0006629 "lipid metabolic process"
evidence=TAS] [GO:0045600 "positive regulation of fat cell
differentiation" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0010745 "negative regulation of macrophage
derived foam cell differentiation" evidence=IC;IDA] [GO:0010887
"negative regulation of cholesterol storage" evidence=IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISS;IDA] [GO:0010871 "negative
regulation of receptor biosynthetic process" evidence=IDA]
[GO:0010891 "negative regulation of sequestering of triglyceride"
evidence=IDA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IDA] [GO:0008144 "drug binding" evidence=IDA] [GO:0008217
"regulation of blood pressure" evidence=IMP] [GO:0032869 "cellular
response to insulin stimulus" evidence=IMP] [GO:0033613 "activating
transcription factor binding" evidence=IDA] [GO:0042593 "glucose
homeostasis" evidence=IMP] [GO:0055088 "lipid homeostasis"
evidence=TAS] [GO:0001890 "placenta development" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS;IDA] [GO:0004955 "prostaglandin receptor
activity" evidence=TAS] [GO:0030224 "monocyte differentiation"
evidence=IDA] [GO:0046965 "retinoid X receptor binding"
evidence=IDA] [GO:0033993 "response to lipid" evidence=ISS]
[GO:0050544 "arachidonic acid binding" evidence=ISS] [GO:0005829
"cytosol" evidence=ISS] [GO:0015909 "long-chain fatty acid
transport" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0030855 "epithelial cell differentiation" evidence=ISS]
[GO:0045165 "cell fate commitment" evidence=ISS] [GO:0007165
"signal transduction" evidence=IDA] [GO:0042953 "lipoprotein
transport" evidence=IDA] [GO:0043565 "sequence-specific DNA
binding" evidence=IDA] [GO:0045713 "low-density lipoprotein
particle receptor biosynthetic process" evidence=IDA] [GO:0055098
"response to low-density lipoprotein particle stimulus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0048469 "cell
maturation" evidence=IDA] [GO:0045087 "innate immune response"
evidence=TAS] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISS;IDA] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IDA]
[GO:0006917 "induction of apoptosis" evidence=IDA] [GO:0060336
"negative regulation of interferon-gamma-mediated signaling
pathway" evidence=IMP] [GO:0048662 "negative regulation of smooth
muscle cell proliferation" evidence=IDA] [GO:0035357 "peroxisome
proliferator activated receptor signaling pathway" evidence=IMP]
[GO:0060694 "regulation of cholesterol transporter activity"
evidence=IC] Reactome:REACT_71 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003074
InterPro:IPR003077 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PRINTS:PR01291 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005829 Reactome:REACT_111045
GO:GO:0005654 GO:GO:0007507 GO:GO:0051091 GO:GO:0006917
GO:GO:0030308 GO:GO:0032869 GO:GO:0042493 EMBL:CH471055
GO:GO:0046872 Pathway_Interaction_DB:nfat_tfpathway GO:GO:0008144
GO:GO:0031100 GO:GO:0009409 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0050873 GO:GO:0007584
GO:GO:0006629 GO:GO:0045087 GO:GO:0002674 GO:GO:0031000
GO:GO:0050872 GO:GO:0045600 GO:GO:0003682 GO:GO:0019395
GO:GO:0042593 GO:GO:0046321 Pathway_Interaction_DB:rxr_vdr_pathway
GO:GO:0010887 GO:GO:0010745 GO:GO:0055098 GO:GO:0042953
GO:GO:0000122 GO:GO:0010891 GO:GO:0044212 GO:GO:0055088
GO:GO:0006919 GO:GO:0032526 GO:GO:0008217 DrugBank:DB00159
DrugBank:DB00197 GO:GO:0048714 GO:GO:0043627 GO:GO:0001890
GO:GO:0001012 GO:GO:0048662 MIM:601665 GO:GO:0033189 GO:GO:0050544
GO:GO:0006367 DrugBank:DB01076 GO:GO:0045165 GO:GO:0030374
GO:GO:0030855 GO:GO:0048469 GO:GO:0046965 GO:GO:0030224
GO:GO:0071285 GO:GO:0015909 eggNOG:NOG266867 DrugBank:DB01132
DrugBank:DB00412 MIM:137800 GO:GO:0060336 Orphanet:360
GO:GO:0033613 GO:GO:0035357 GO:GO:0051974 PDB:1FM6 PDB:1FM9
PDB:1K74 PDB:1RDT PDB:2FVJ PDB:2GTK PDB:2HFP PDB:2PRG PDB:3CWD
PDB:3ET3 PDB:3FEJ PDB:3FUR PDB:3G9E PDB:3H0A PDB:3LMP PDB:3QT0
PDB:3S9S PDB:3T03 PDB:3V9Y PDB:3VN2 PDB:4F9M PDBsum:1FM6
PDBsum:1FM9 PDBsum:1K74 PDBsum:1RDT PDBsum:2FVJ PDBsum:2GTK
PDBsum:2HFP PDBsum:2PRG PDBsum:3CWD PDBsum:3ET3 PDBsum:3FEJ
PDBsum:3FUR PDBsum:3G9E PDBsum:3H0A PDBsum:3LMP PDBsum:3QT0
PDBsum:3S9S PDBsum:3T03 PDBsum:3V9Y PDBsum:3VN2 PDBsum:4F9M
PDB:3DZU PDB:3DZY PDB:3E00 PDBsum:3DZU PDBsum:3DZY PDBsum:3E00
PDB:1WM0 PDBsum:1WM0 PDB:1ZGY PDBsum:1ZGY GO:GO:0010871
HOVERGEN:HBG106004 CTD:5468 KO:K08530 OMA:KTTDKSP GO:GO:0045713
InterPro:IPR022590 Pfam:PF12577 EMBL:U79012 EMBL:U63415 EMBL:D83233
EMBL:L40904 EMBL:AB005526 EMBL:X90563 EMBL:DQ356894 EMBL:BT007281
EMBL:AK290581 EMBL:AB451337 EMBL:AB451486 EMBL:AY157024
EMBL:AC090947 EMBL:AC091492 EMBL:AC093174 EMBL:BC006811
IPI:IPI00020897 IPI:IPI00853091 IPI:IPI00926009 PIR:JC4859
PIR:PC4290 PIR:PC4429 RefSeq:NP_005028.4 RefSeq:NP_056953.2
RefSeq:NP_619725.2 RefSeq:NP_619726.2 UniGene:Hs.162646 PDB:1I7I
PDB:1KNU PDB:1NYX PDB:1PRG PDB:1ZEO PDB:2ATH PDB:2F4B PDB:2G0G
PDB:2G0H PDB:2HWQ PDB:2HWR PDB:2I4J PDB:2I4P PDB:2I4Z PDB:2OM9
PDB:2P4Y PDB:2POB PDB:2Q59 PDB:2Q5P PDB:2Q5S PDB:2Q61 PDB:2Q6R
PDB:2Q6S PDB:2Q8S PDB:2QMV PDB:2VSR PDB:2VST PDB:2VV0 PDB:2VV1
PDB:2VV2 PDB:2VV3 PDB:2VV4 PDB:2XKW PDB:2YFE PDB:2ZK0 PDB:2ZK1
PDB:2ZK2 PDB:2ZK3 PDB:2ZK4 PDB:2ZK5 PDB:2ZK6 PDB:2ZNO PDB:2ZVT
PDB:3ADS PDB:3ADT PDB:3ADU PDB:3ADV PDB:3ADW PDB:3ADX PDB:3AN3
PDB:3AN4 PDB:3B0Q PDB:3B0R PDB:3B1M PDB:3B3K PDB:3BC5 PDB:3CDP
PDB:3CDS PDB:3CS8 PDB:3D6D PDB:3ET0 PDB:3GBK PDB:3HO0 PDB:3HOD
PDB:3IA6 PDB:3K8S PDB:3KMG PDB:3NOA PDB:3OSI PDB:3OSW PDB:3PBA
PDB:3PO9 PDB:3PRG PDB:3R5N PDB:3R8A PDB:3R8I PDB:3SZ1 PDB:3TY0
PDB:3U9Q PDB:3V9T PDB:3V9V PDB:3VJH PDB:3VJI PDB:4A4V PDB:4A4W
PDB:4PRG PDBsum:1I7I PDBsum:1KNU PDBsum:1NYX PDBsum:1PRG
PDBsum:1ZEO PDBsum:2ATH PDBsum:2F4B PDBsum:2G0G PDBsum:2G0H
PDBsum:2HWQ PDBsum:2HWR PDBsum:2I4J PDBsum:2I4P PDBsum:2I4Z
PDBsum:2OM9 PDBsum:2P4Y PDBsum:2POB PDBsum:2Q59 PDBsum:2Q5P
PDBsum:2Q5S PDBsum:2Q61 PDBsum:2Q6R PDBsum:2Q6S PDBsum:2Q8S
PDBsum:2QMV PDBsum:2VSR PDBsum:2VST PDBsum:2VV0 PDBsum:2VV1
PDBsum:2VV2 PDBsum:2VV3 PDBsum:2VV4 PDBsum:2XKW PDBsum:2YFE
PDBsum:2ZK0 PDBsum:2ZK1 PDBsum:2ZK2 PDBsum:2ZK3 PDBsum:2ZK4
PDBsum:2ZK5 PDBsum:2ZK6 PDBsum:2ZNO PDBsum:2ZVT PDBsum:3ADS
PDBsum:3ADT PDBsum:3ADU PDBsum:3ADV PDBsum:3ADW PDBsum:3ADX
PDBsum:3AN3 PDBsum:3AN4 PDBsum:3B0Q PDBsum:3B0R PDBsum:3B1M
PDBsum:3B3K PDBsum:3BC5 PDBsum:3CDP PDBsum:3CDS PDBsum:3CS8
PDBsum:3D6D PDBsum:3ET0 PDBsum:3GBK PDBsum:3HO0 PDBsum:3HOD
PDBsum:3IA6 PDBsum:3K8S PDBsum:3KMG PDBsum:3NOA PDBsum:3OSI
PDBsum:3OSW PDBsum:3PBA PDBsum:3PO9 PDBsum:3PRG PDBsum:3R5N
PDBsum:3R8A PDBsum:3R8I PDBsum:3SZ1 PDBsum:3TY0 PDBsum:3U9Q
PDBsum:3V9T PDBsum:3V9V PDBsum:3VJH PDBsum:3VJI PDBsum:4A4V
PDBsum:4A4W PDBsum:4PRG ProteinModelPortal:P37231 SMR:P37231
DIP:DIP-35528N IntAct:P37231 MINT:MINT-5209723 STRING:P37231
PhosphoSite:P37231 DMDM:13432234 PRIDE:P37231 DNASU:5468
Ensembl:ENST00000287820 Ensembl:ENST00000309576
Ensembl:ENST00000396999 Ensembl:ENST00000397010
Ensembl:ENST00000397012 Ensembl:ENST00000397015 GeneID:5468
KEGG:hsa:5468 UCSC:uc003bwr.3 GeneCards:GC03P012328 HGNC:HGNC:9236
HPA:CAB004282 MIM:601487 MIM:604367 MIM:606641 MIM:609338
neXtProt:NX_P37231 Orphanet:79083 PharmGKB:PA281 InParanoid:P37231
PhylomeDB:P37231 BindingDB:P37231 ChEMBL:CHEMBL235 ChiTaRS:PPARG
EvolutionaryTrace:P37231 GenomeRNAi:5468 NextBio:21164
ArrayExpress:P37231 Bgee:P37231 Genevestigator:P37231
GermOnline:ENSG00000132170 GO:GO:0004955 GO:GO:0060694
Uniprot:P37231
Length = 505
Score = 184 (69.8 bits), Expect = 5.6e-22, Sum P(2) = 5.6e-22
Identities = 34/70 (48%), Positives = 53/70 (75%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS 71
+E+ +E S
Sbjct: 218 KEKLLAEISS 227
Score = 103 (41.3 bits), Expect = 5.6e-22, Sum P(2) = 5.6e-22
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 320 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 379
Query: 234 QLE 236
L+
Sbjct: 380 FLK 382
>UNIPROTKB|O18924 [details] [associations]
symbol:PPARG "Peroxisome proliferator-activated receptor
gamma" species:9544 "Macaca mulatta" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0030374 "ligand-dependent nuclear receptor
transcription coactivator activity" evidence=ISS] [GO:0032526
"response to retinoic acid" evidence=ISS] [GO:0045600 "positive
regulation of fat cell differentiation" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0050872 "white fat cell
differentiation" evidence=ISS] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003074
InterPro:IPR003077 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PRINTS:PR01291 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005829 GO:GO:0005634
GO:GO:0008285 GO:GO:0051091 GO:GO:0006917 GO:GO:0032869
GO:GO:0046872 GO:GO:0003677 GO:GO:0008144 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0050873
GO:GO:0050872 GO:GO:0045600 GO:GO:0003682 GO:GO:0042593
GO:GO:0010887 GO:GO:0055098 GO:GO:0042953 GO:GO:0000122
GO:GO:0010891 GO:GO:0006919 GO:GO:0032526 GO:GO:0008217
GO:GO:0001890 GO:GO:0001012 GO:GO:0045165 GO:GO:0030374
GO:GO:0030855 GO:GO:0048469 GO:GO:0030224 GO:GO:0071285
GO:GO:0015909 eggNOG:NOG266867 GO:GO:0060336 GO:GO:0010871
HOGENOM:HOG000261626 HOVERGEN:HBG106004 CTD:5468 KO:K08530
GO:GO:0045713 InterPro:IPR022590 Pfam:PF12577 OrthoDB:EOG41ZF9W
EMBL:AF033103 EMBL:AF033343 EMBL:AF033342 RefSeq:NP_001028032.1
UniGene:Mmu.3422 ProteinModelPortal:O18924 SMR:O18924
MINT:MINT-138526 STRING:O18924 GeneID:574190 KEGG:mcc:574190
InParanoid:O18924 NextBio:19981584 Uniprot:O18924
Length = 505
Score = 184 (69.8 bits), Expect = 5.6e-22, Sum P(2) = 5.6e-22
Identities = 34/70 (48%), Positives = 53/70 (75%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS 71
+E+ +E S
Sbjct: 218 KEKLLAEISS 227
Score = 103 (41.3 bits), Expect = 5.6e-22, Sum P(2) = 5.6e-22
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 320 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 379
Query: 234 QLE 236
L+
Sbjct: 380 FLK 382
>UNIPROTKB|B3KY83 [details] [associations]
symbol:RXRA "cDNA FLJ16020 fis, clone BRAMY2003287, highly
similar to RETINOIC ACID RECEPTOR RXR-ALPHA" species:9606 "Homo
sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IEA]
[GO:0004886 "9-cis retinoic acid receptor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0055010 "ventricular cardiac muscle tissue morphogenesis"
evidence=IEA] [GO:0055012 "ventricular cardiac muscle cell
differentiation" evidence=IEA] [GO:0060038 "cardiac muscle cell
proliferation" evidence=IEA] [GO:0060528 "secretory columnal
luminar epithelial cell differentiation involved in prostate
glandular acinus development" evidence=IEA] [GO:0060687 "regulation
of branching involved in prostate gland morphogenesis"
evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0008285
GO:GO:0032869 GO:GO:0045471 GO:GO:0046872 GO:GO:0007568
GO:GO:0030424 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0006954
GO:GO:0045944 GO:GO:0051384 GO:GO:0007565 GO:GO:0001889
GO:GO:0007494 GO:GO:0044212 GO:GO:0043065 GO:GO:0032526
GO:GO:0003690 GO:GO:0001890 GO:GO:0033189 GO:GO:0010269
GO:GO:0031490 GO:GO:0033280 GO:GO:0031103 GO:GO:0060038
GO:GO:0055010 GO:GO:0060687 HOVERGEN:HBG005606 GO:GO:0060528
GO:GO:0055012 GO:GO:0004886 InterPro:IPR021780 Pfam:PF11825
EMBL:AC156789 EMBL:AL354796 EMBL:AL669970 EMBL:AL683798
UniGene:Hs.590886 HGNC:HGNC:10477 EMBL:AK131192 IPI:IPI01011260
SMR:B3KY83 STRING:B3KY83 Ensembl:ENST00000540193 Uniprot:B3KY83
Length = 365
Score = 186 (70.5 bits), Expect = 5.9e-22, Sum P(2) = 5.9e-22
Identities = 34/71 (47%), Positives = 54/71 (76%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+++K + Y C RD K CL+ + RNRCQYCR++KCLA+GM R++V+ R +R
Sbjct: 59 KGFFKRTVRKDLTYTC-RDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRG 115
Query: 62 RERSDSETGST 72
++R+++E ST
Sbjct: 116 KDRNENEVEST 126
Score = 94 (38.1 bits), Expect = 5.9e-22, Sum P(2) = 5.9e-22
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 182 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHR 237
>UNIPROTKB|E2RD69 [details] [associations]
symbol:RXRG "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0004886 "9-cis
retinoic acid receptor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GeneTree:ENSGT00690000101777 GO:GO:0004886 InterPro:IPR021780
Pfam:PF11825 CTD:6258 KO:K08526 OMA:FMKFPTG EMBL:AAEX03018391
RefSeq:XP_536146.2 ProteinModelPortal:E2RD69
Ensembl:ENSCAFT00000021179 GeneID:478989 KEGG:cfa:478989
NextBio:20854245 Uniprot:E2RD69
Length = 463
Score = 188 (71.2 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
Identities = 36/67 (53%), Positives = 52/67 (77%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K CL+ + RNRCQYCR++KCL +GM R++V+ R +RS
Sbjct: 160 KGFFKRTIRKDLMYTC-RDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRS 216
Query: 62 RERSDSE 68
RER++SE
Sbjct: 217 RERAESE 223
Score = 97 (39.2 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 280 LVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>UNIPROTKB|E1BYS2 [details] [associations]
symbol:NR4A3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IEA]
[GO:0001707 "mesoderm formation" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0007411 "axon
guidance" evidence=IEA] [GO:0021766 "hippocampus development"
evidence=IEA] [GO:0030534 "adult behavior" evidence=IEA]
[GO:0033554 "cellular response to stress" evidence=IEA] [GO:0043524
"negative regulation of neuron apoptotic process" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0045787 "positive regulation of cell cycle" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0050885 "neuromuscular process controlling balance"
evidence=IEA] [GO:0060005 "vestibular reflex" evidence=IEA]
[GO:2000108 "positive regulation of leukocyte apoptotic process"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003070 InterPro:IPR003072
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01284 PRINTS:PR01286
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0033554 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0043524 GO:GO:0005667 GO:GO:0001077
GO:GO:0030522 GO:GO:0045787 GeneTree:ENSGT00640000091364 CTD:8013
KO:K08559 OMA:PSTSMYF GO:GO:2000108 GO:GO:0060005 EMBL:AC140790
IPI:IPI00599268 RefSeq:XP_419081.3 UniGene:Gga.33742
Ensembl:ENSGALT00000022087 GeneID:420996 KEGG:gga:420996
Uniprot:E1BYS2
Length = 609
Score = 187 (70.9 bits), Expect = 6.6e-22, Sum P(2) = 6.6e-22
Identities = 49/126 (38%), Positives = 72/126 (57%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRY-------G 55
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCL+VGM ++ VR G
Sbjct: 291 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRG 350
Query: 56 RVPKRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSST--ELDTKQLLTYDVILA 113
R+P S+ +S + ++ S PP S+ A V++L ST ELD + + D A
Sbjct: 351 RLP--SKPKSPLQQEPSQPSPPS--PPISMMNA-LVRALTDSTPRELDYSRYCSTDQAAA 405
Query: 114 VSQAHH 119
+ A H
Sbjct: 406 GTDAEH 411
Score = 102 (41.0 bits), Expect = 6.6e-22, Sum P(2) = 6.6e-22
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVS-RL-TTDSSLT 223
QQF +T S+ +A+++PGF DL ++DQ +LI+ F EL++ +S R T +
Sbjct: 413 QQFYNLLTASIDISRGWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSDTAEDKFV 472
Query: 224 FSDGMYVTRQQ 234
F +G+ + R Q
Sbjct: 473 FCNGLVLHRLQ 483
>UNIPROTKB|Q95KZ8 [details] [associations]
symbol:PPARgamma2 "Peroxisome proliferator-activated
receptor gamma 2" species:9541 "Macaca fascicularis" [GO:0045600
"positive regulation of fat cell differentiation" evidence=ISS]
[GO:0050872 "white fat cell differentiation" evidence=ISS]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003074 InterPro:IPR003077 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01291 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0050872 GO:GO:0045600 GO:GO:0030522 HOVERGEN:HBG106004
InterPro:IPR022590 Pfam:PF12577 EMBL:AY048695 HSSP:Q96J12
ProteinModelPortal:Q95KZ8 SMR:Q95KZ8 Uniprot:Q95KZ8
Length = 505
Score = 184 (69.8 bits), Expect = 7.1e-22, Sum P(2) = 7.1e-22
Identities = 34/70 (48%), Positives = 53/70 (75%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y RC D C + + +RN+CQYCRF+KCLAVGMS +++R+GR+P+
Sbjct: 160 KGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAE 217
Query: 62 RERSDSETGS 71
+E+ +E S
Sbjct: 218 KEKLLAEISS 227
Score = 102 (41.0 bits), Expect = 7.1e-22, Sum P(2) = 7.1e-22
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L + S+G ++TR+
Sbjct: 320 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVFISEGQGFMTRE 379
Query: 234 QLE 236
L+
Sbjct: 380 FLK 382
>UNIPROTKB|Q0VC20 [details] [associations]
symbol:RXRG "Retinoic acid receptor RXR-gamma" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0004886 "9-cis retinoic acid receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000003 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0046872 eggNOG:NOG327099
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 HOVERGEN:HBG005606
GeneTree:ENSGT00690000101777 HOGENOM:HOG000260821 GO:GO:0004886
InterPro:IPR021780 Pfam:PF11825 OrthoDB:EOG42RD7K EMBL:BC120391
IPI:IPI00712482 RefSeq:NP_001068876.1 UniGene:Bt.11333
ProteinModelPortal:Q0VC20 SMR:Q0VC20 STRING:Q0VC20 PRIDE:Q0VC20
Ensembl:ENSBTAT00000022350 GeneID:509500 KEGG:bta:509500 CTD:6258
InParanoid:Q0VC20 KO:K08526 OMA:FMKFPTG NextBio:20868991
Uniprot:Q0VC20
Length = 463
Score = 187 (70.9 bits), Expect = 7.7e-22, Sum P(2) = 7.7e-22
Identities = 36/67 (53%), Positives = 52/67 (77%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K CL+ + RNRCQYCR++KCL +GM R++V+ R +RS
Sbjct: 160 KGFFKRTIRKDLIYTC-RDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRS 216
Query: 62 RERSDSE 68
RER++SE
Sbjct: 217 RERAESE 223
Score = 97 (39.2 bits), Expect = 7.7e-22, Sum P(2) = 7.7e-22
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 280 LVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>UNIPROTKB|Q0GFF6 [details] [associations]
symbol:RXRG "Retinoic acid receptor RXR-gamma" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0004886 "9-cis retinoic acid receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000003 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0046872 eggNOG:NOG327099
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 HOVERGEN:HBG005606
GeneTree:ENSGT00690000101777 HOGENOM:HOG000260821 GO:GO:0004886
InterPro:IPR021780 Pfam:PF11825 OrthoDB:EOG42RD7K CTD:6258
KO:K08526 OMA:FMKFPTG EMBL:DQ866834 EMBL:AY429474
RefSeq:NP_001123685.1 UniGene:Ssc.19608 ProteinModelPortal:Q0GFF6
SMR:Q0GFF6 STRING:Q0GFF6 Ensembl:ENSSSCT00000006936 GeneID:445465
KEGG:ssc:445465 Uniprot:Q0GFF6
Length = 463
Score = 187 (70.9 bits), Expect = 7.7e-22, Sum P(2) = 7.7e-22
Identities = 36/67 (53%), Positives = 52/67 (77%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K CL+ + RNRCQYCR++KCL +GM R++V+ R +RS
Sbjct: 160 KGFFKRTIRKDLIYTC-RDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRS 216
Query: 62 RERSDSE 68
RER++SE
Sbjct: 217 RERAESE 223
Score = 97 (39.2 bits), Expect = 7.7e-22, Sum P(2) = 7.7e-22
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 280 LVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>MGI|MGI:98216 [details] [associations]
symbol:Rxrg "retinoid X receptor gamma" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004886 "9-cis retinoic acid receptor activity"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0031641
"regulation of myelination" evidence=ISO] [GO:0043401 "steroid
hormone mediated signaling pathway" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IGI] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IGI] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048384 "retinoic acid receptor signaling pathway"
evidence=IDA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 MGI:MGI:98216 GO:GO:0005634
GO:GO:0007507 GO:GO:0030182 GO:GO:0046872 eggNOG:NOG327099
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0007422
GO:GO:0032526 GO:GO:0007519 HOVERGEN:HBG005606
GeneTree:ENSGT00690000101777 HOGENOM:HOG000260821 GO:GO:0004886
InterPro:IPR021780 Pfam:PF11825 OrthoDB:EOG42RD7K CTD:6258
KO:K08526 OMA:FMKFPTG EMBL:M84819 EMBL:X66225 EMBL:S62948
EMBL:BC058401 IPI:IPI00124345 PIR:B41727 PIR:S26670
RefSeq:NP_001153203.1 RefSeq:NP_033133.1 UniGene:Mm.3475
ProteinModelPortal:P28705 SMR:P28705 STRING:P28705
PhosphoSite:P28705 PRIDE:P28705 Ensembl:ENSMUST00000015987
Ensembl:ENSMUST00000111384 Ensembl:ENSMUST00000111386 GeneID:20183
KEGG:mmu:20183 UCSC:uc007dla.2 InParanoid:P28705 BindingDB:P28705
ChEMBL:CHEMBL4402 NextBio:297713 Bgee:P28705 CleanEx:MM_RXRG
Genevestigator:P28705 GermOnline:ENSMUSG00000015843 Uniprot:P28705
Length = 463
Score = 187 (70.9 bits), Expect = 7.7e-22, Sum P(2) = 7.7e-22
Identities = 36/67 (53%), Positives = 52/67 (77%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K CL+ + RNRCQYCR++KCL +GM R++V+ R +RS
Sbjct: 160 KGFFKRTIRKDLIYTC-RDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER--QRS 216
Query: 62 RERSDSE 68
RER++SE
Sbjct: 217 RERAESE 223
Score = 97 (39.2 bits), Expect = 7.7e-22, Sum P(2) = 7.7e-22
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F DL+ +DQ+IL++ G+ EL I S ++ + + G++V R
Sbjct: 280 LVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHR 335
>ZFIN|ZDB-GENE-070314-2 [details] [associations]
symbol:rxraa "retinoid X receptor, alpha a"
species:7955 "Danio rerio" [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0043401
"steroid hormone mediated signaling pathway" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000003
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-070314-2
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0003700 GO:GO:0006351 GeneTree:ENSGT00690000101777
InterPro:IPR021780 Pfam:PF11825 EMBL:CU062650 EMBL:BX001031
IPI:IPI00994409 ProteinModelPortal:F1R1Y8
Ensembl:ENSDART00000124173 ArrayExpress:F1R1Y8 Bgee:F1R1Y8
Uniprot:F1R1Y8
Length = 495
Score = 190 (71.9 bits), Expect = 9.9e-22, Sum P(2) = 9.9e-22
Identities = 35/71 (49%), Positives = 55/71 (77%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+++K + Y C RD K C++ + RNRCQYCR++KCLA+GM R++V+ R +R+
Sbjct: 189 KGFFKRTVRKDLTYTC-RDNKDCVIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRA 245
Query: 62 RERSDSETGST 72
+ERS++E ST
Sbjct: 246 KERSENEVEST 256
Score = 94 (38.1 bits), Expect = 9.9e-22, Sum P(2) = 9.9e-22
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 312 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHR 367
>ZFIN|ZDB-GENE-990415-211 [details] [associations]
symbol:pparab "peroxisome proliferator activated
receptor alpha b" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006950 "response to stress" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003076
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01289
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
ZFIN:ZDB-GENE-990415-211 GO:GO:0005634 GO:GO:0046872 GO:GO:0009409
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
GeneTree:ENSGT00700000104361 OMA:ICPLSPL EMBL:CR354430
IPI:IPI00864106 Ensembl:ENSDART00000076500 Uniprot:F1QYF6
Length = 461
Score = 189 (71.6 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 36/75 (48%), Positives = 56/75 (74%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R +C + + NRN+CQYCRF+KCL+VGMS +++R+GR+P+
Sbjct: 120 KGFFRRTIRLKLEYDKCER--RCKIQKKNRNKCQYCRFQKCLSVGMSHNAIRFGRMPQSE 177
Query: 62 RERSDSE--TGSTRV 74
+ R +E TG V
Sbjct: 178 KLRLKAEILTGERDV 192
Score = 93 (37.8 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSDGMYVTRQ 233
+V + EFAK VPGF +L +DQ+ L+K G E L+ S + D L ++TR+
Sbjct: 277 TVTELTEFAKSVPGFSNLDLNDQVTLLKYGVHEALFAMLASCMNKDGLLVAYGSGFITRE 336
Query: 234 QLE 236
L+
Sbjct: 337 FLK 339
>ZFIN|ZDB-GENE-990415-184 [details] [associations]
symbol:nr4a2a "nuclear receptor subfamily 4, group
A, member 2a" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0021954 "central nervous system neuron
development" evidence=IMP] [GO:0021953 "central nervous system
neuron differentiation" evidence=IGI] [GO:0021884 "forebrain neuron
development" evidence=IMP] [GO:0071542 "dopaminergic neuron
differentiation" evidence=IGI] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003070 InterPro:IPR003073
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01284 PRINTS:PR01287
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
ZFIN:ZDB-GENE-990415-184 GO:GO:0005634 GO:GO:0046872 GO:GO:0071542
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
GO:GO:0021884 GeneTree:ENSGT00640000091364 EMBL:CU179638
IPI:IPI00932496 ProteinModelPortal:F1RER4
Ensembl:ENSDART00000109954 Bgee:F1RER4 Uniprot:F1RER4
Length = 635
Score = 190 (71.9 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 52/137 (37%), Positives = 73/137 (53%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCL VGM ++ VR + R R
Sbjct: 321 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLVVGMVKEVVRTDNLKGR-R 379
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETA---GPVQSLPSSTELD-TKQLLTYDVILAVSQAH 118
R S+ S + S+ + PP SL +A V S PS LD T+ D L+
Sbjct: 380 GRLPSKPKSPQESSPPS-PPVSLISALVRAHVDSNPSMNSLDYTRFQANPDYQLSGDDTQ 438
Query: 119 HSNCEYTE-EGTRRLVR 134
H Y G+ ++R
Sbjct: 439 HIQQFYDLLTGSMEIIR 455
Score = 97 (39.2 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF +T S++ + +A+++PGF DL + DQ +L + F EL++ Y S +S L
Sbjct: 441 QQFYDLLTGSMEIIRGWAEKIPGFTDLPKPDQDLLFESAFLELFVLRLAYRSN-PMESKL 499
Query: 223 TFSDGMYVTRQQ 234
F +G+ + R Q
Sbjct: 500 IFCNGVVLHRLQ 511
>UNIPROTKB|F1NWF0 [details] [associations]
symbol:THRB "Thyroid hormone receptor beta" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
[GO:0004887 "thyroid hormone receptor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR001728
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887
GeneTree:ENSGT00680000099662 EMBL:AADN02001118 EMBL:AADN02001120
EMBL:AADN02001121 EMBL:AADN02001122 EMBL:AADN02001123
EMBL:AADN02001124 EMBL:AADN02001119 IPI:IPI00587738
Ensembl:ENSGALT00000018423 ArrayExpress:F1NWF0 Uniprot:F1NWF0
Length = 363
Score = 160 (61.4 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 37/91 (40%), Positives = 52/91 (57%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYG--RVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 62 KGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLA 121
Query: 59 KRS--RERSDSETGSTRVSTTGAEP-PSSLE 86
KR E + T G +P P+ E
Sbjct: 122 KRKLIEENREKRRREELQKTIGHKPEPTDEE 152
Score = 127 (49.8 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 30/74 (40%), Positives = 47/74 (63%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ QF +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +L
Sbjct: 203 FSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 262
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 263 TLNGEMAVTRGQLK 276
>UNIPROTKB|Q6NXU0 [details] [associations]
symbol:NR4A2 "Nuclear receptor subfamily 4, group A, member
2" species:9606 "Homo sapiens" [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0001666 "response to hypoxia" evidence=IEA]
[GO:0001764 "neuron migration" evidence=IEA] [GO:0001975 "response
to amphetamine" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0008344 "adult locomotory
behavior" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0010035 "response to inorganic substance"
evidence=IEA] [GO:0016265 "death" evidence=IEA] [GO:0017085
"response to insecticide" evidence=IEA] [GO:0021952 "central
nervous system projection neuron axonogenesis" evidence=IEA]
[GO:0021986 "habenula development" evidence=IEA] [GO:0033554
"cellular response to stress" evidence=IEA] [GO:0042053 "regulation
of dopamine metabolic process" evidence=IEA] [GO:0042416 "dopamine
biosynthetic process" evidence=IEA] [GO:0042551 "neuron maturation"
evidence=IEA] [GO:0043085 "positive regulation of catalytic
activity" evidence=IEA] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0043576 "regulation of respiratory
gaseous exchange" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0071542 "dopaminergic neuron differentiation" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003070 InterPro:IPR003073 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01284 PRINTS:PR01287 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0005737 GO:GO:0043085 GO:GO:0001764 GO:GO:0033554
GO:GO:0046872 GO:GO:0071542 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0001666 GO:GO:0045944 GO:GO:0008344
GO:GO:0001975 GO:GO:0043524 GO:GO:0009791 GO:GO:0010035
GO:GO:0042416 GO:GO:0021952 GO:GO:0042053 GO:GO:0016265
GO:GO:0030522 GO:GO:0043576 GO:GO:0017085 GO:GO:0042551
GO:GO:0021986 HOGENOM:HOG000230925 HOVERGEN:HBG052663 EMBL:AC074099
UniGene:Hs.563344 HGNC:HGNC:7981 ChiTaRS:NR4A2 HSSP:P20393
EMBL:BC066890 EMBL:AK291456 IPI:IPI00927645 SMR:Q6NXU0
STRING:Q6NXU0 Ensembl:ENST00000426264 Uniprot:Q6NXU0
Length = 535
Score = 189 (71.6 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 45/102 (44%), Positives = 61/102 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCLAVGM ++ VR + R R
Sbjct: 221 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGR-R 279
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETA---GPVQSLPSSTELD 101
R S+ S + + PP SL +A V S P+ T LD
Sbjct: 280 GRLPSKPKSPQ-EPSPPSPPVSLISALVRAHVDSNPAMTSLD 320
Score = 94 (38.1 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF +T S++ + +A+++PGF DL + DQ +L + F EL++ Y S + L
Sbjct: 341 QQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSN-PVEGKL 399
Query: 223 TFSDGMYVTRQQ 234
F +G+ + R Q
Sbjct: 400 IFCNGVVLHRLQ 411
>UNIPROTKB|P68306 [details] [associations]
symbol:THRB "Thyroid hormone receptor beta" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887 HOVERGEN:HBG005606
GeneTree:ENSGT00680000099662 eggNOG:NOG272726 HOGENOM:HOG000010313
CTD:7068 KO:K08362 EMBL:X17504 EMBL:M65207 EMBL:Z50188
IPI:IPI00657637 PIR:S09625 RefSeq:NP_990778.1 UniGene:Gga.609
ProteinModelPortal:P68306 SMR:P68306 IntAct:P68306 STRING:P68306
Ensembl:ENSGALT00000031162 GeneID:396431 KEGG:gga:396431
OrthoDB:EOG4Z8XWB NextBio:20816472 ArrayExpress:P68306
Uniprot:P68306
Length = 369
Score = 160 (61.4 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 37/91 (40%), Positives = 52/91 (57%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYG--RVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 36 KGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLA 95
Query: 59 KRS--RERSDSETGSTRVSTTGAEP-PSSLE 86
KR E + T G +P P+ E
Sbjct: 96 KRKLIEENREKRRREELQKTIGHKPEPTDEE 126
Score = 127 (49.8 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 30/74 (40%), Positives = 47/74 (63%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ QF +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +L
Sbjct: 177 FSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 236
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 237 TLNGEMAVTRGQLK 250
>UNIPROTKB|F1NH64 [details] [associations]
symbol:RXRA "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0001893 "maternal placenta
development" evidence=IEA] [GO:0004886 "9-cis retinoic acid
receptor activity" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0031490 "chromatin
DNA binding" evidence=IEA] [GO:0035357 "peroxisome proliferator
activated receptor signaling pathway" evidence=IEA] [GO:0042809
"vitamin D receptor binding" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0044323 "retinoic
acid-responsive element binding" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0055010 "ventricular cardiac muscle
tissue morphogenesis" evidence=IEA] [GO:0055012 "ventricular
cardiac muscle cell differentiation" evidence=IEA] [GO:0060038
"cardiac muscle cell proliferation" evidence=IEA] [GO:0060528
"secretory columnal luminar epithelial cell differentiation
involved in prostate glandular acinus development" evidence=IEA]
[GO:0060687 "regulation of branching involved in prostate gland
morphogenesis" evidence=IEA] [GO:0070644 "vitamin D response
element binding" evidence=IEA] InterPro:IPR000003
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0000122
GO:GO:0000790 GO:GO:0031490 GO:GO:0060687
GeneTree:ENSGT00690000101777 GO:GO:0035357 GO:GO:0044323
GO:GO:0004886 InterPro:IPR021780 Pfam:PF11825 OMA:KHFLPLD
GO:GO:0070644 EMBL:AADN02026433 EMBL:AADN02026434 EMBL:AADN02026435
IPI:IPI00584474 Ensembl:ENSGALT00000004139 Uniprot:F1NH64
Length = 448
Score = 186 (70.5 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 34/71 (47%), Positives = 54/71 (76%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+++K + Y C RD K CL+ + RNRCQYCR++KCLA+GM R++V+ R +R
Sbjct: 142 KGFFKRTVRKDLTYTC-RDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRG 198
Query: 62 RERSDSETGST 72
++R+++E ST
Sbjct: 199 KDRNENEVEST 209
Score = 94 (38.1 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 265 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHR 320
>ZFIN|ZDB-GENE-990415-242 [details] [associations]
symbol:rxrbb "retinoid x receptor, beta b"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043401 "steroid hormone mediated signaling pathway"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0001071 "nucleic acid binding
transcription factor activity" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-990415-242 GO:GO:0005634
GO:GO:0045892 GO:GO:0046872 eggNOG:NOG327099 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 HOVERGEN:HBG005606 HOGENOM:HOG000260821
OrthoDB:EOG4SJ5DV GO:GO:0004886 InterPro:IPR021780 Pfam:PF11825
EMBL:U29941 IPI:IPI00480966 PIR:I50516 RefSeq:NP_571313.1
UniGene:Dr.350 ProteinModelPortal:Q90417 SMR:Q90417 GeneID:30486
KEGG:dre:30486 CTD:30486 NextBio:20806878 ArrayExpress:Q90417
Uniprot:Q90417
Length = 422
Score = 182 (69.1 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 38/87 (43%), Positives = 54/87 (62%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+++K + Y C RD K CLV + RNRCQYCR++KCLA+GM R++V+ R +
Sbjct: 111 KGFFKRTVRKDLSYTC-RDNKECLVDKRQRNRCQYCRYQKCLAMGMKREAVQEERQKNKE 169
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETA 88
R+ D E S+ E ETA
Sbjct: 170 RD-GDYECSSSANEEMPVEKILEAETA 195
Score = 97 (39.2 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQ 233
+VE+AKRVP F D+ DDQ+IL++ G+ EL I S ++ + + G++V ++
Sbjct: 228 LVEWAKRVPHFSDVPLDDQVILLRAGWNELLIAAFSHRSISVKDEILLATGLHVPKE 284
>ZFIN|ZDB-GENE-990415-213 [details] [associations]
symbol:pparg "peroxisome proliferator activated
receptor gamma" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003074 InterPro:IPR003077 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01291 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430
ZFIN:ZDB-GENE-990415-213 GO:GO:0005634 GO:GO:0046872 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522 eggNOG:NOG266867
HOGENOM:HOG000261626 HOVERGEN:HBG106004 CTD:5468 KO:K08530
InterPro:IPR022590 Pfam:PF12577 OrthoDB:EOG41ZF9W EMBL:DQ839547
IPI:IPI00614364 RefSeq:NP_571542.1 UniGene:Dr.159153
ProteinModelPortal:A6XMH6 SMR:A6XMH6 STRING:A6XMH6 GeneID:557037
KEGG:dre:557037 NextBio:20881787 Uniprot:A6XMH6
Length = 527
Score = 173 (66.0 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 32/70 (45%), Positives = 51/70 (72%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y C D C + + +RN+CQYCRF+KCL VGMS +++R+GR+P+
Sbjct: 176 KGFFRRTIRLKLVYDHC--DLHCRIHKKSRNKCQYCRFQKCLMVGMSHNAIRFGRMPQAE 233
Query: 62 RERSDSETGS 71
+E+ +E S
Sbjct: 234 KEKLLAEFSS 243
Score = 110 (43.8 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 157 HESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL 216
HE + L + + + ++ V EFAK +PGF +L +DQ+ L+K G E+ I +S L
Sbjct: 325 HEVE-LRFFHSYQSRSAEAISEVTEFAKSIPGFINLDLNDQVTLLKYGVIEVMIIMISPL 383
Query: 217 TTDSSLTFSDG-MYVTRQQLE 236
S G +++TR+ L+
Sbjct: 384 MNKDGTLISYGQIFMTREFLK 404
>UNIPROTKB|P19793 [details] [associations]
symbol:RXRA "Retinoic acid receptor RXR-alpha" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IEA]
[GO:0004886 "9-cis retinoic acid receptor activity" evidence=IEA]
[GO:0007566 "embryo implantation" evidence=IEA] [GO:0031490
"chromatin DNA binding" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0055010
"ventricular cardiac muscle tissue morphogenesis" evidence=IEA]
[GO:0055012 "ventricular cardiac muscle cell differentiation"
evidence=IEA] [GO:0060038 "cardiac muscle cell proliferation"
evidence=IEA] [GO:0060528 "secretory columnal luminar epithelial
cell differentiation involved in prostate glandular acinus
development" evidence=IEA] [GO:0060687 "regulation of branching
involved in prostate gland morphogenesis" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0044323 "retinoic acid-responsive element
binding" evidence=IDA] [GO:0046982 "protein heterodimerization
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0035357 "peroxisome proliferator activated receptor signaling
pathway" evidence=IDA] [GO:0019048 "virus-host interaction"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0006766 "vitamin metabolic process" evidence=TAS]
[GO:0003713 "transcription coactivator activity" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0044255 "cellular lipid metabolic process"
evidence=TAS] [GO:0044281 "small molecule metabolic process"
evidence=TAS] [GO:0003708 "retinoic acid receptor activity"
evidence=TAS] [GO:0008203 "cholesterol metabolic process"
evidence=TAS] [GO:0032526 "response to retinoic acid" evidence=IMP]
[GO:0048384 "retinoic acid receptor signaling pathway"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IDA] [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0070644 "vitamin D response element binding"
evidence=IDA] [GO:0042809 "vitamin D receptor binding"
evidence=IPI] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IDA] Reactome:REACT_71
Reactome:REACT_111217 InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430
Pathway_Interaction_DB:a6b1_a6b4_integrin_pathway
Reactome:REACT_111045 GO:GO:0019048 GO:GO:0008285 GO:GO:0005654
GO:GO:0032869 GO:GO:0045471 GO:GO:0046872 GO:GO:0007568
GO:GO:0030424 eggNOG:NOG327099 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
EMBL:CH471090 GO:GO:0006954 GO:GO:0045944 GO:GO:0051384
GO:GO:0007565 GO:GO:0008203 GO:GO:0001889 GO:GO:0044255
Pathway_Interaction_DB:rxr_vdr_pathway GO:GO:0007494 GO:GO:0000122
GO:GO:0043065 GO:GO:0000790 GO:GO:0003713 GO:GO:0032526
GO:GO:0003690 GO:GO:0046982 GO:GO:0001890
Pathway_Interaction_DB:retinoic_acid_pathway GO:GO:0033189
DrugBank:DB00459 Pathway_Interaction_DB:ar_tf_pathway GO:GO:0006367
GO:GO:0010269 GO:GO:0031490 GO:GO:0033280 GO:GO:0031103
GO:GO:0060038 GO:GO:0055010 GO:GO:0060687 HOVERGEN:HBG005606
GO:GO:0006766 PDB:1R0N PDBsum:1R0N GO:GO:0060528 GO:GO:0035357
GO:GO:0055012 GO:GO:0044323 PDB:1FM6 PDB:1FM9 PDB:1K74 PDB:1RDT
PDB:1XV9 PDB:1XVP PDB:3H0A PDBsum:1FM6 PDBsum:1FM9 PDBsum:1K74
PDBsum:1RDT PDBsum:1XV9 PDBsum:1XVP PDBsum:3H0A PDB:1MV9 PDB:1MVC
PDB:1MZN PDB:2P1T PDB:2P1U PDB:2P1V PDB:2ZXZ PDB:2ZY0 PDB:3DZU
PDB:3DZY PDB:3E00 PDB:3E94 PDB:3FUG PDB:3KWY PDB:3OAP PDB:3OZJ
PDB:3PCU PDB:3R5M PDBsum:1MV9 PDBsum:1MVC PDBsum:1MZN PDBsum:2P1T
PDBsum:2P1U PDBsum:2P1V PDBsum:2ZXZ PDBsum:2ZY0 PDBsum:3DZU
PDBsum:3DZY PDBsum:3E00 PDBsum:3E94 PDBsum:3FUG PDBsum:3KWY
PDBsum:3OAP PDBsum:3OZJ PDBsum:3PCU PDBsum:3R5M PDB:1XLS
PDBsum:1XLS PDB:3R29 PDB:3R2A PDBsum:3R29 PDBsum:3R2A PDB:2ACL
PDB:3FAL PDB:3FC6 PDBsum:2ACL PDBsum:3FAL PDBsum:3FC6
DrugBank:DB00523 DrugBank:DB00926 PDB:1DSZ PDBsum:1DSZ
DrugBank:DB00210 OrthoDB:EOG4SJ5DV GO:GO:0004886 InterPro:IPR021780
Pfam:PF11825 EMBL:X52773 EMBL:AB307705 EMBL:AC156789 EMBL:AL354796
EMBL:AL669970 EMBL:AL683798 EMBL:BC110998 EMBL:DQ303444
IPI:IPI00418394 PIR:S09592 RefSeq:NP_002948.1 UniGene:Hs.590886
PDB:1BY4 PDB:1FBY PDB:1G1U PDB:1G5Y PDB:1LBD PDB:1RXR PDB:1YNW
PDB:2NLL PDB:3NSP PDB:3NSQ PDB:3UVV PDBsum:1BY4 PDBsum:1FBY
PDBsum:1G1U PDBsum:1G5Y PDBsum:1LBD PDBsum:1RXR PDBsum:1YNW
PDBsum:2NLL PDBsum:3NSP PDBsum:3NSQ PDBsum:3UVV DisProt:DP00062
ProteinModelPortal:P19793 SMR:P19793 DIP:DIP-641N IntAct:P19793
MINT:MINT-98407 STRING:P19793 PhosphoSite:P19793 DMDM:133701
PaxDb:P19793 PRIDE:P19793 DNASU:6256 Ensembl:ENST00000481739
GeneID:6256 KEGG:hsa:6256 UCSC:uc004cfb.2 CTD:6256
GeneCards:GC09P137208 HGNC:HGNC:10477 HPA:CAB004565 HPA:CAB005352
MIM:180245 neXtProt:NX_P19793 PharmGKB:PA34890 InParanoid:P19793
KO:K08524 OMA:KHFLPLD BindingDB:P19793 ChEMBL:CHEMBL2061
EvolutionaryTrace:P19793 GenomeRNAi:6256 NextBio:24295
PMAP-CutDB:P19793 ArrayExpress:P19793 Bgee:P19793 CleanEx:HS_RXRA
Genevestigator:P19793 GermOnline:ENSG00000186350 Uniprot:P19793
Length = 462
Score = 186 (70.5 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 34/71 (47%), Positives = 54/71 (76%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+++K + Y C RD K CL+ + RNRCQYCR++KCLA+GM R++V+ R +R
Sbjct: 156 KGFFKRTVRKDLTYTC-RDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRG 212
Query: 62 RERSDSETGST 72
++R+++E ST
Sbjct: 213 KDRNENEVEST 223
Score = 94 (38.1 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 279 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHR 334
>UNIPROTKB|H9L323 [details] [associations]
symbol:H9L323 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003074
InterPro:IPR003076 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PRINTS:PR01289 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
GeneTree:ENSGT00700000104361 EMBL:AADN02041005 EMBL:AADN02041006
Ensembl:ENSGALT00000036096 OMA:IREGSHY Uniprot:H9L323
Length = 393
Score = 182 (69.1 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 34/75 (45%), Positives = 54/75 (72%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y +C D C + + NRN+CQYCRF+KCL+VGMS +++R+GR+P+
Sbjct: 56 KGFFRRTIRLKLIYDKC--DRNCKIQKKNRNKCQYCRFQKCLSVGMSHNAIRFGRMPRSE 113
Query: 62 RERSDSE--TGSTRV 74
+ + +E TG V
Sbjct: 114 KAKLKAEILTGENYV 128
Score = 95 (38.5 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSDGMYVTRQ 233
+V + EFAK +PGF +L +DQ+ L+K G +E ++ S + D L ++TR+
Sbjct: 216 TVTELTEFAKSIPGFSNLDLNDQVTLLKYGVYEAIFAMLASVMNKDGMLVAYGNGFITRE 275
Query: 234 QLE 236
L+
Sbjct: 276 FLK 278
>MGI|MGI:98214 [details] [associations]
symbol:Rxra "retinoid X receptor alpha" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=IGI] [GO:0001890 "placenta development"
evidence=IMP] [GO:0001893 "maternal placenta development"
evidence=IGI] [GO:0003007 "heart morphogenesis" evidence=TAS]
[GO:0003677 "DNA binding" evidence=ISO;IDA;IPI] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO;IGI] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=ISO;IDA] [GO:0004886 "9-cis retinoic acid receptor
activity" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISO;IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IGI] [GO:0007507 "heart development" evidence=IMP;TAS]
[GO:0007566 "embryo implantation" evidence=IGI] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0010629 "negative regulation of
gene expression" evidence=TAS] [GO:0019048 "virus-host interaction"
evidence=ISO] [GO:0019899 "enzyme binding" evidence=ISO]
[GO:0019904 "protein domain specific binding" evidence=ISO]
[GO:0030424 "axon" evidence=ISO] [GO:0031490 "chromatin DNA
binding" evidence=IDA] [GO:0031641 "regulation of myelination"
evidence=ISO] [GO:0032403 "protein complex binding" evidence=ISO]
[GO:0032526 "response to retinoic acid" evidence=ISO] [GO:0035357
"peroxisome proliferator activated receptor signaling pathway"
evidence=ISO] [GO:0042809 "vitamin D receptor binding"
evidence=ISO] [GO:0042974 "retinoic acid receptor binding"
evidence=ISO] [GO:0043065 "positive regulation of apoptotic
process" evidence=ISO] [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IGI] [GO:0044212 "transcription regulatory region
DNA binding" evidence=IDA] [GO:0044323 "retinoic acid-responsive
element binding" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IGI;TAS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IGI;ISO;IDA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] [GO:0048384 "retinoic acid receptor signaling
pathway" evidence=ISO;IDA] [GO:0051384 "response to glucocorticoid
stimulus" evidence=ISO] [GO:0055007 "cardiac muscle cell
differentiation" evidence=TAS] [GO:0055010 "ventricular cardiac
muscle tissue morphogenesis" evidence=IMP] [GO:0055012 "ventricular
cardiac muscle cell differentiation" evidence=IGI;IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IGI;IMP;TAS]
[GO:0060485 "mesenchyme development" evidence=TAS] [GO:0060528
"secretory columnal luminar epithelial cell differentiation
involved in prostate glandular acinus development" evidence=IMP]
[GO:0060687 "regulation of branching involved in prostate gland
morphogenesis" evidence=IMP] [GO:0060978 "angiogenesis involved in
coronary vascular morphogenesis" evidence=TAS] [GO:0061032
"visceral serous pericardium development" evidence=TAS]
InterPro:IPR000003 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 MGI:MGI:98214 GO:GO:0019048 GO:GO:0008285
GO:GO:0005654 GO:GO:0032869 GO:GO:0045471 GO:GO:0046872
GO:GO:0007568 GO:GO:0030424 eggNOG:NOG327099 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0001701 GO:GO:0006954 GO:GO:0045944
GO:GO:0051384 GO:GO:0001889 GO:GO:0007494 GO:GO:0000122
GO:GO:0043065 Reactome:REACT_127416 GO:GO:0000790 GO:GO:0032526
GO:GO:0060978 GO:GO:0003690 GO:GO:0010629 GO:GO:0001893
GO:GO:0033189 GO:GO:0010269 GO:GO:0031490 GO:GO:0033280
GO:GO:0007566 GO:GO:0031103 GO:GO:0060038 GO:GO:0055010
GO:GO:0060687 Reactome:REACT_27166 HOVERGEN:HBG005606 GO:GO:0061032
GO:GO:0060528 GO:GO:0060485 GeneTree:ENSGT00690000101777
GO:GO:0035357 PDB:1XDK PDBsum:1XDK GO:GO:0055012 GO:GO:0044323
PDB:3A9E PDBsum:3A9E PDB:1DKF PDBsum:1DKF HOGENOM:HOG000260821
OrthoDB:EOG4SJ5DV GO:GO:0004886 InterPro:IPR021780 Pfam:PF11825
CTD:6256 KO:K08524 OMA:KHFLPLD EMBL:M84817 EMBL:X66223
IPI:IPI00467109 PIR:S26668 RefSeq:NP_035435.1 UniGene:Mm.24624
ProteinModelPortal:P28700 SMR:P28700 IntAct:P28700
MINT:MINT-2775018 STRING:P28700 PhosphoSite:P28700 PRIDE:P28700
Ensembl:ENSMUST00000077257 Ensembl:ENSMUST00000166775 GeneID:20181
KEGG:mmu:20181 InParanoid:P28700 BindingDB:P28700 ChEMBL:CHEMBL3084
ChiTaRS:RXRA EvolutionaryTrace:P28700 NextBio:297705 Bgee:P28700
CleanEx:MM_RXRA Genevestigator:P28700 GermOnline:ENSMUSG00000015846
GO:GO:0070644 Uniprot:P28700
Length = 467
Score = 186 (70.5 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 34/71 (47%), Positives = 54/71 (76%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+++K + Y C RD K CL+ + RNRCQYCR++KCLA+GM R++V+ R +R
Sbjct: 161 KGFFKRTVRKDLTYTC-RDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRG 217
Query: 62 RERSDSETGST 72
++R+++E ST
Sbjct: 218 KDRNENEVEST 228
Score = 94 (38.1 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 284 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHR 339
>RGD|3610 [details] [associations]
symbol:Rxra "retinoid X receptor alpha" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA;ISO] [GO:0000790 "nuclear
chromatin" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0001889 "liver development"
evidence=IEP] [GO:0001890 "placenta development" evidence=IEP;ISO]
[GO:0001893 "maternal placenta development" evidence=IEA;ISO]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISO] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA;TAS] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=ISO] [GO:0004886 "9-cis retinoic acid receptor activity"
evidence=IEA;ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISO;IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006954 "inflammatory response" evidence=IEP]
[GO:0007494 "midgut development" evidence=IEP] [GO:0007507 "heart
development" evidence=ISO] [GO:0007565 "female pregnancy"
evidence=IEP] [GO:0007566 "embryo implantation" evidence=IEA;ISO]
[GO:0007568 "aging" evidence=IEP] [GO:0007584 "response to nutrient"
evidence=IEP] [GO:0008134 "transcription factor binding"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation" evidence=IMP]
[GO:0010269 "response to selenium ion" evidence=IEP] [GO:0014070
"response to organic cyclic compound" evidence=IEP] [GO:0019048
"virus-host interaction" evidence=IEA;ISO] [GO:0019899 "enzyme
binding" evidence=IEA;ISO] [GO:0019904 "protein domain specific
binding" evidence=IPI] [GO:0030424 "axon" evidence=IDA] [GO:0031103
"axon regeneration" evidence=IEP] [GO:0031490 "chromatin DNA binding"
evidence=IEA;ISO] [GO:0031641 "regulation of myelination"
evidence=IDA] [GO:0032403 "protein complex binding" evidence=IPI]
[GO:0032526 "response to retinoic acid" evidence=IEP;ISO] [GO:0032869
"cellular response to insulin stimulus" evidence=IEP] [GO:0033189
"response to vitamin A" evidence=IEP] [GO:0033280 "response to
vitamin D" evidence=IEP] [GO:0035357 "peroxisome proliferator
activated receptor signaling pathway" evidence=IEA;ISO] [GO:0042809
"vitamin D receptor binding" evidence=IEA;ISO] [GO:0042974 "retinoic
acid receptor binding" evidence=IPI] [GO:0043065 "positive regulation
of apoptotic process" evidence=IMP] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA;ISO] [GO:0044323 "retinoic acid-responsive
element binding" evidence=IEA;ISO] [GO:0045471 "response to ethanol"
evidence=IEP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0046982 "protein heterodimerization activity" evidence=IEA;ISO]
[GO:0048384 "retinoic acid receptor signaling pathway" evidence=ISO]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEP;IMP]
[GO:0055010 "ventricular cardiac muscle tissue morphogenesis"
evidence=IEA;ISO] [GO:0055012 "ventricular cardiac muscle cell
differentiation" evidence=IEA;ISO] [GO:0060038 "cardiac muscle cell
proliferation" evidence=IEA;ISO] [GO:0060528 "secretory columnal
luminar epithelial cell differentiation involved in prostate
glandular acinus development" evidence=IEA;ISO] [GO:0060687
"regulation of branching involved in prostate gland morphogenesis"
evidence=IEA;ISO] [GO:0070644 "vitamin D response element binding"
evidence=IEA;ISO] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:3610 GO:GO:0005634 GO:GO:0019048
GO:GO:0008285 GO:GO:0006355 GO:GO:0032869 GO:GO:0045471 GO:GO:0046872
GO:GO:0007568 GO:GO:0030424 eggNOG:NOG327099 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0006954 GO:GO:0045944 GO:GO:0051384
GO:GO:0007565 GO:GO:0001889 GO:GO:0007494 GO:GO:0000122 GO:GO:0043065
GO:GO:0000790 GO:GO:0032526 GO:GO:0001890 GO:GO:0033189 GO:GO:0010269
GO:GO:0031490 GO:GO:0033280 GO:GO:0031103 GO:GO:0060038 GO:GO:0055010
GO:GO:0060687 GO:GO:0031641 HOVERGEN:HBG005606 GO:GO:0060528
GO:GO:0035357 GO:GO:0055012 GO:GO:0044323 HOGENOM:HOG000260821
OrthoDB:EOG4SJ5DV GO:GO:0004886 InterPro:IPR021780 Pfam:PF11825
GO:GO:0070644 EMBL:L06482 IPI:IPI00188860 PIR:A47278 PIR:I67427
UniGene:Rn.108206 ProteinModelPortal:Q05343 SMR:Q05343 STRING:Q05343
PhosphoSite:Q05343 UCSC:RGD:3610 InParanoid:Q05343 BindingDB:Q05343
ChEMBL:CHEMBL4431 ArrayExpress:Q05343 Genevestigator:Q05343
GermOnline:ENSRNOG00000009446 Uniprot:Q05343
Length = 467
Score = 186 (70.5 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 34/71 (47%), Positives = 54/71 (76%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+++K + Y C RD K CL+ + RNRCQYCR++KCLA+GM R++V+ R +R
Sbjct: 161 KGFFKRTVRKDLTYTC-RDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRG 217
Query: 62 RERSDSETGST 72
++R+++E ST
Sbjct: 218 KDRNENEVEST 228
Score = 94 (38.1 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 284 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHR 339
>UNIPROTKB|Q0VJ96 [details] [associations]
symbol:Rxra "Retinoic acid receptor RXR-alpha"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:3610 GO:GO:0019048 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0000122
GO:GO:0000790 GO:GO:0031490 GO:GO:0060038 GO:GO:0055010
GO:GO:0060687 HOVERGEN:HBG005606 EMBL:CH474001 GO:GO:0060528
GeneTree:ENSGT00690000101777 GO:GO:0035357 GO:GO:0055012
GO:GO:0044323 GO:GO:0004886 InterPro:IPR021780 Pfam:PF11825
CTD:6256 KO:K08524 GO:GO:0070644 UniGene:Rn.108206 EMBL:AM295012
EMBL:AM295013 EMBL:AM392401 IPI:IPI00851118 RefSeq:NP_036937.2
SMR:Q0VJ96 STRING:Q0VJ96 Ensembl:ENSRNOT00000012892 GeneID:25271
KEGG:rno:25271 InParanoid:Q0VJ96 NextBio:605957
Genevestigator:Q0VJ96 Uniprot:Q0VJ96
Length = 467
Score = 186 (70.5 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 34/71 (47%), Positives = 54/71 (76%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+++K + Y C RD K CL+ + RNRCQYCR++KCLA+GM R++V+ R +R
Sbjct: 161 KGFFKRTVRKDLTYTC-RDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRG 217
Query: 62 RERSDSETGST 72
++R+++E ST
Sbjct: 218 KDRNENEVEST 228
Score = 94 (38.1 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 284 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHR 339
>UNIPROTKB|F1P6M9 [details] [associations]
symbol:RXRA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] InterPro:IPR000003
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700
GO:GO:0006351 GeneTree:ENSGT00690000101777 InterPro:IPR021780
Pfam:PF11825 OMA:KHFLPLD EMBL:AAEX03006790
Ensembl:ENSCAFT00000031555 Uniprot:F1P6M9
Length = 486
Score = 186 (70.5 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 34/71 (47%), Positives = 54/71 (76%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+++K + Y C RD K CL+ + RNRCQYCR++KCLA+GM R++V+ R +R
Sbjct: 180 KGFFKRTVRKDLTYTC-RDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRG 236
Query: 62 RERSDSETGST 72
++R+++E ST
Sbjct: 237 KDRNENEVEST 247
Score = 94 (38.1 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 303 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHR 358
>UNIPROTKB|J3KSJ4 [details] [associations]
symbol:RARA "Retinoic acid receptor alpha" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0001657 "ureteric bud
development" evidence=IEA] [GO:0003417 "growth plate cartilage
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IEA] [GO:0014068 "positive regulation of
phosphatidylinositol 3-kinase cascade" evidence=IEA] [GO:0030425
"dendrite" evidence=IEA] [GO:0030852 "regulation of granulocyte
differentiation" evidence=IEA] [GO:0032526 "response to retinoic
acid" evidence=IEA] [GO:0035014 "phosphatidylinositol 3-kinase
regulator activity" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0043025 "neuronal cell body"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0045596 "negative regulation of cell
differentiation" evidence=IEA] [GO:0045947 "negative regulation of
translational initiation" evidence=IEA] [GO:0051897 "positive
regulation of protein kinase B signaling cascade" evidence=IEA]
[GO:0055012 "ventricular cardiac muscle cell differentiation"
evidence=IEA] [GO:0060010 "Sertoli cell fate commitment"
evidence=IEA] [GO:0060591 "chondroblast differentiation"
evidence=IEA] [GO:0061037 "negative regulation of cartilage
development" evidence=IEA] [GO:0070374 "positive regulation of ERK1
and ERK2 cascade" evidence=IEA] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS51030 SMART:SM00399
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0003708 EMBL:AC080112 HGNC:HGNC:9864 ChiTaRS:RARA
Ensembl:ENST00000475125 Uniprot:J3KSJ4
Length = 186
Score = 141 (54.7 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 16 YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60
Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR R K+
Sbjct: 3 YTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK 47
Score = 123 (48.4 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYV-SRLTTDS-S 221
LW +F+ T + + VEFAK++PGF L+ DQ+ L+K ++ I + +R T + +
Sbjct: 105 LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDT 164
Query: 222 LTFSDGMYVTRQQL 235
+TFSDG+ + R Q+
Sbjct: 165 MTFSDGLTLNRTQM 178
>UNIPROTKB|E1C6K9 [details] [associations]
symbol:NR4A2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0001666 "response to hypoxia" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0001975 "response to amphetamine"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008344
"adult locomotory behavior" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0016265 "death"
evidence=IEA] [GO:0021952 "central nervous system projection neuron
axonogenesis" evidence=IEA] [GO:0021986 "habenula development"
evidence=IEA] [GO:0031668 "cellular response to extracellular
stimulus" evidence=IEA] [GO:0033554 "cellular response to stress"
evidence=IEA] [GO:0042053 "regulation of dopamine metabolic
process" evidence=IEA] [GO:0042416 "dopamine biosynthetic process"
evidence=IEA] [GO:0042551 "neuron maturation" evidence=IEA]
[GO:0043085 "positive regulation of catalytic activity"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0043576 "regulation of respiratory
gaseous exchange" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0071542 "dopaminergic neuron differentiation" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003070 InterPro:IPR003073 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01284 PRINTS:PR01287 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0043085 GO:GO:0033554 GO:GO:0046872 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0001666 GO:GO:0045944
GO:GO:0001975 GO:GO:0043524 GO:GO:0042416 GO:GO:0042053
GO:GO:0016265 GO:GO:0030522 GO:GO:0043576 KO:K08558
GeneTree:ENSGT00640000091364 CTD:4929 OMA:MWEDPGS EMBL:AADN02017061
IPI:IPI00579183 RefSeq:XP_422166.2 Ensembl:ENSGALT00000020478
GeneID:424320 KEGG:gga:424320 NextBio:20826667 Uniprot:E1C6K9
Length = 598
Score = 189 (71.6 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 45/102 (44%), Positives = 61/102 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCLAVGM ++ VR + R R
Sbjct: 284 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGR-R 342
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETA---GPVQSLPSSTELD 101
R S+ S + + PP SL +A V S P+ T LD
Sbjct: 343 GRLPSKPKSPQ-EPSPPSPPVSLISALVRAHVDSNPAMTSLD 383
Score = 94 (38.1 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF +T S++ + +A+++PGF DL + DQ +L + F EL++ Y S + L
Sbjct: 404 QQFYDLLTGSMEIIRGWAEKIPGFTDLPKTDQDLLFESAFLELFVLRLAYRSN-PVEGKL 462
Query: 223 TFSDGMYVTRQQ 234
F +G+ + R Q
Sbjct: 463 IFCNGVVLHRLQ 474
>UNIPROTKB|P43354 [details] [associations]
symbol:NR4A2 "Nuclear receptor subfamily 4 group A member
2" species:9606 "Homo sapiens" [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0001666 "response to hypoxia" evidence=IEA]
[GO:0001764 "neuron migration" evidence=IEA] [GO:0001975 "response
to amphetamine" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008344 "adult locomotory behavior" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0010035 "response to
inorganic substance" evidence=IEA] [GO:0016265 "death"
evidence=IEA] [GO:0017085 "response to insecticide" evidence=IEA]
[GO:0021952 "central nervous system projection neuron axonogenesis"
evidence=IEA] [GO:0021986 "habenula development" evidence=IEA]
[GO:0033554 "cellular response to stress" evidence=IEA] [GO:0042053
"regulation of dopamine metabolic process" evidence=IEA]
[GO:0042416 "dopamine biosynthetic process" evidence=IEA]
[GO:0042551 "neuron maturation" evidence=IEA] [GO:0043085 "positive
regulation of catalytic activity" evidence=IEA] [GO:0043524
"negative regulation of neuron apoptotic process" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0043576 "regulation of respiratory gaseous exchange"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IDA] [GO:0071542 "dopaminergic neuron differentiation"
evidence=ISS] [GO:0007165 "signal transduction" evidence=NAS]
[GO:0031668 "cellular response to extracellular stimulus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030522
"intracellular receptor mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003070 InterPro:IPR003073
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01284 PRINTS:PR01287
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005737 GO:GO:0043085 GO:GO:0001764 GO:GO:0005654
GO:GO:0033554 GO:GO:0046872 GO:GO:0071542 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0001666 GO:GO:0045944
GO:GO:0008344 GO:GO:0001975 GO:GO:0043524 GO:GO:0031668
GO:GO:0009791 GO:GO:0010035 GO:GO:0042416 EMBL:CH471058
GO:GO:0021952 GO:GO:0042053 GO:GO:0016265 GO:GO:0006367
GO:GO:0043576 Orphanet:2828 GO:GO:0017085 GO:GO:0042551
eggNOG:NOG245120 KO:K08558 GO:GO:0021986 HOVERGEN:HBG052663
CTD:4929 OrthoDB:EOG40CHGK EMBL:X75918 EMBL:AB017586 EMBL:AB019433
EMBL:AC074099 EMBL:BC009288 EMBL:S77154 IPI:IPI01013823 PIR:A57040
RefSeq:NP_006177.1 UniGene:Hs.563344 PDB:1OVL PDBsum:1OVL
ProteinModelPortal:P43354 SMR:P43354 IntAct:P43354 STRING:P43354
PhosphoSite:P43354 DMDM:1171750 PRIDE:P43354 DNASU:4929
Ensembl:ENST00000339562 Ensembl:ENST00000409572 GeneID:4929
KEGG:hsa:4929 UCSC:uc002tyx.4 GeneCards:GC02M157180 HGNC:HGNC:7981
HPA:CAB010481 HPA:HPA000543 MIM:601828 neXtProt:NX_P43354
PharmGKB:PA31762 InParanoid:P43354 PhylomeDB:P43354
ChEMBL:CHEMBL5002 ChiTaRS:NR4A2 EvolutionaryTrace:P43354
GenomeRNAi:4929 NextBio:18989 ArrayExpress:P43354 Bgee:P43354
CleanEx:HS_NR4A2 Genevestigator:P43354 GermOnline:ENSG00000153234
Uniprot:P43354
Length = 598
Score = 189 (71.6 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 45/102 (44%), Positives = 61/102 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCLAVGM ++ VR + R R
Sbjct: 284 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGR-R 342
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETA---GPVQSLPSSTELD 101
R S+ S + + PP SL +A V S P+ T LD
Sbjct: 343 GRLPSKPKSPQ-EPSPPSPPVSLISALVRAHVDSNPAMTSLD 383
Score = 94 (38.1 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF +T S++ + +A+++PGF DL + DQ +L + F EL++ Y S + L
Sbjct: 404 QQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSN-PVEGKL 462
Query: 223 TFSDGMYVTRQQ 234
F +G+ + R Q
Sbjct: 463 IFCNGVVLHRLQ 474
>UNIPROTKB|F1RPU1 [details] [associations]
symbol:NR4A2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071542 "dopaminergic neuron differentiation"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043576
"regulation of respiratory gaseous exchange" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043085 "positive regulation of catalytic
activity" evidence=IEA] [GO:0042551 "neuron maturation"
evidence=IEA] [GO:0042416 "dopamine biosynthetic process"
evidence=IEA] [GO:0042053 "regulation of dopamine metabolic
process" evidence=IEA] [GO:0033554 "cellular response to stress"
evidence=IEA] [GO:0031668 "cellular response to extracellular
stimulus" evidence=IEA] [GO:0021986 "habenula development"
evidence=IEA] [GO:0021952 "central nervous system projection neuron
axonogenesis" evidence=IEA] [GO:0016265 "death" evidence=IEA]
[GO:0009791 "post-embryonic development" evidence=IEA] [GO:0008344
"adult locomotory behavior" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001975 "response to amphetamine" evidence=IEA]
[GO:0001764 "neuron migration" evidence=IEA] [GO:0001666 "response
to hypoxia" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003070 InterPro:IPR003073 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01284 PRINTS:PR01287 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0043085 GO:GO:0001764 GO:GO:0033554 GO:GO:0046872
GO:GO:0071542 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0001666 GO:GO:0045944 GO:GO:0008344 GO:GO:0001975
GO:GO:0043524 GO:GO:0009791 GO:GO:0042416 GO:GO:0021952
GO:GO:0042053 GO:GO:0016265 GO:GO:0030522 GO:GO:0043576
GO:GO:0042551 GeneTree:ENSGT00640000091364 GO:GO:0021986
OMA:MWEDPGS EMBL:CU463810 EMBL:HQ738304 Ensembl:ENSSSCT00000017282
Uniprot:F1RPU1
Length = 598
Score = 189 (71.6 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 45/102 (44%), Positives = 61/102 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCLAVGM ++ VR + R R
Sbjct: 284 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGR-R 342
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETA---GPVQSLPSSTELD 101
R S+ S + + PP SL +A V S P+ T LD
Sbjct: 343 GRLPSKPKSPQ-EPSPPSPPVSLISALVRAHVDSNPAMTSLD 383
Score = 94 (38.1 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF +T S++ + +A+++PGF DL + DQ +L + F EL++ Y S + L
Sbjct: 404 QQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSN-PVEGKL 462
Query: 223 TFSDGMYVTRQQ 234
F +G+ + R Q
Sbjct: 463 IFCNGVVLHRLQ 474
>UNIPROTKB|Q5R5Y4 [details] [associations]
symbol:NR4A2 "Nuclear receptor subfamily 4 group A member
2" species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0006351 "transcription, DNA-dependent" evidence=ISS]
[GO:0071542 "dopaminergic neuron differentiation" evidence=ISS]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003070 InterPro:IPR003073 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01284 PRINTS:PR01287 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0071542 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0006351 GO:GO:0030522 HOGENOM:HOG000230925
HOVERGEN:HBG052663 EMBL:CR860717 UniGene:Pab.19568 HSSP:P43354
ProteinModelPortal:Q5R5Y4 SMR:Q5R5Y4 InParanoid:Q5R5Y4
Uniprot:Q5R5Y4
Length = 598
Score = 189 (71.6 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 45/102 (44%), Positives = 61/102 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCLAVGM ++ VR + R R
Sbjct: 284 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGR-R 342
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETA---GPVQSLPSSTELD 101
R S+ S + + PP SL +A V S P+ T LD
Sbjct: 343 GRLPSKPKSPQ-EPSPPSPPVSLISALVRAHVDSNPAMTSLD 383
Score = 94 (38.1 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF +T S++ + +A+++PGF DL + DQ +L + F EL++ Y S + L
Sbjct: 404 QQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSN-PVEGKL 462
Query: 223 TFSDGMYVTRQQ 234
F +G+ + R Q
Sbjct: 463 IFCNGVVLHRLQ 474
>MGI|MGI:1352456 [details] [associations]
symbol:Nr4a2 "nuclear receptor subfamily 4, group A, member
2" species:10090 "Mus musculus" [GO:0001666 "response to hypoxia"
evidence=IMP] [GO:0001764 "neuron migration" evidence=IMP]
[GO:0001975 "response to amphetamine" evidence=IMP] [GO:0003677
"DNA binding" evidence=IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;IMP] [GO:0006950
"response to stress" evidence=IMP] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008344 "adult locomotory behavior" evidence=IMP]
[GO:0009791 "post-embryonic development" evidence=IMP] [GO:0010035
"response to inorganic substance" evidence=ISO] [GO:0010467 "gene
expression" evidence=IMP] [GO:0016265 "death" evidence=IMP]
[GO:0017085 "response to insecticide" evidence=ISO] [GO:0021952
"central nervous system projection neuron axonogenesis"
evidence=IMP] [GO:0021953 "central nervous system neuron
differentiation" evidence=IMP] [GO:0021986 "habenula development"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0030522 "intracellular receptor mediated signaling pathway"
evidence=TAS] [GO:0031668 "cellular response to extracellular
stimulus" evidence=ISO;IDA] [GO:0033554 "cellular response to
stress" evidence=IMP] [GO:0042053 "regulation of dopamine metabolic
process" evidence=IDA] [GO:0042416 "dopamine biosynthetic process"
evidence=IMP] [GO:0042417 "dopamine metabolic process"
evidence=IMP] [GO:0042551 "neuron maturation" evidence=IMP]
[GO:0043085 "positive regulation of catalytic activity"
evidence=IMP] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=ISO;IDA] [GO:0043576 "regulation of respiratory
gaseous exchange" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IGI;IMP;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
[GO:0071542 "dopaminergic neuron differentiation" evidence=IDA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003070 InterPro:IPR003073 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01284 PRINTS:PR01287 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 MGI:MGI:1352456
GO:GO:0005634 GO:GO:0005737 GO:GO:0043085 GO:GO:0001764
GO:GO:0033554 GO:GO:0046872 GO:GO:0071542 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0001666 GO:GO:0045944
GO:GO:0008344 GO:GO:0001975 GO:GO:0043524 GO:GO:0031668
GO:GO:0009791 GO:GO:0010035 GO:GO:0042416 GO:GO:0021952
GO:GO:0042053 GO:GO:0016265 GO:GO:0043576 GO:GO:0017085
GO:GO:0042551 eggNOG:NOG245120 KO:K08558 GO:GO:0021986
HOGENOM:HOG000230925 HOVERGEN:HBG052663 CTD:4929 OMA:MWEDPGS
OrthoDB:EOG40CHGK ChiTaRS:NR4A2 EMBL:S53744 EMBL:U86783
IPI:IPI00112726 IPI:IPI00230431 PIR:A46225 RefSeq:NP_001132981.1
RefSeq:NP_038641.1 UniGene:Mm.3507 ProteinModelPortal:Q06219
SMR:Q06219 IntAct:Q06219 STRING:Q06219 PhosphoSite:Q06219
PRIDE:Q06219 Ensembl:ENSMUST00000028166 Ensembl:ENSMUST00000112629
GeneID:18227 KEGG:mmu:18227 UCSC:uc012bvn.1 InParanoid:Q06219
NextBio:293656 Bgee:Q06219 CleanEx:MM_NR4A2 Genevestigator:Q06219
GermOnline:ENSMUSG00000026826 Uniprot:Q06219
Length = 598
Score = 189 (71.6 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 45/102 (44%), Positives = 61/102 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCLAVGM ++ VR + R R
Sbjct: 284 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGR-R 342
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETA---GPVQSLPSSTELD 101
R S+ S + + PP SL +A V S P+ T LD
Sbjct: 343 GRLPSKPKSPQ-DPSPPSPPVSLISALVRAHVDSNPAMTSLD 383
Score = 94 (38.1 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF +T S++ + +A+++PGF DL + DQ +L + F EL++ Y S + L
Sbjct: 404 QQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSN-PVEGKL 462
Query: 223 TFSDGMYVTRQQ 234
F +G+ + R Q
Sbjct: 463 IFCNGVVLHRLQ 474
>RGD|3202 [details] [associations]
symbol:Nr4a2 "nuclear receptor subfamily 4, group A, member 2"
species:10116 "Rattus norvegicus" [GO:0001666 "response to hypoxia"
evidence=IEA;ISO] [GO:0001764 "neuron migration" evidence=IEA;ISO]
[GO:0001975 "response to amphetamine" evidence=IEA;ISO] [GO:0003677
"DNA binding" evidence=ISO;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=TAS] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA;TAS] [GO:0005634
"nucleus" evidence=IEA;ISO;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=ISO;ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006950 "response to
stress" evidence=ISO] [GO:0007399 "nervous system development"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008344 "adult locomotory behavior" evidence=IEA;ISO] [GO:0009791
"post-embryonic development" evidence=IEA;ISO] [GO:0010035 "response
to inorganic substance" evidence=IDA] [GO:0010467 "gene expression"
evidence=ISO] [GO:0016265 "death" evidence=IEA;ISO] [GO:0017085
"response to insecticide" evidence=IDA] [GO:0021952 "central nervous
system projection neuron axonogenesis" evidence=IEA;ISO] [GO:0021953
"central nervous system neuron differentiation" evidence=ISO]
[GO:0021986 "habenula development" evidence=IEA;ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0030522 "intracellular
receptor mediated signaling pathway" evidence=TAS] [GO:0031668
"cellular response to extracellular stimulus" evidence=IEA;ISO]
[GO:0033554 "cellular response to stress" evidence=IEA;ISO]
[GO:0042053 "regulation of dopamine metabolic process"
evidence=IEA;ISO] [GO:0042416 "dopamine biosynthetic process"
evidence=IEA;ISO] [GO:0042417 "dopamine metabolic process"
evidence=ISO] [GO:0042551 "neuron maturation" evidence=IEA;ISO]
[GO:0043085 "positive regulation of catalytic activity"
evidence=IEA;ISO] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IEA;ISO] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA;ISO;IDA] [GO:0043576 "regulation of
respiratory gaseous exchange" evidence=IEA;ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA;ISO] [GO:0046982 "protein heterodimerization
activity" evidence=IEA;ISO] [GO:0071542 "dopaminergic neuron
differentiation" evidence=ISO;ISS] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003070
InterPro:IPR003073 InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104
Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01284
PRINTS:PR01287 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 RGD:3202 GO:GO:0005634 GO:GO:0005737 GO:GO:0043085
GO:GO:0001764 GO:GO:0033554 GO:GO:0046872 GO:GO:0071542 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0001666 GO:GO:0045944
GO:GO:0008344 GO:GO:0001975 GO:GO:0043524 GO:GO:0009791 GO:GO:0010035
GO:GO:0042416 GO:GO:0021952 GO:GO:0042053 GO:GO:0016265 GO:GO:0043576
GO:GO:0017085 GO:GO:0042551 eggNOG:NOG245120 KO:K08558
GeneTree:ENSGT00640000091364 GO:GO:0021986 HOGENOM:HOG000230925
HOVERGEN:HBG052663 CTD:4929 OrthoDB:EOG40CHGK EMBL:U01146 EMBL:L08595
EMBL:U72345 IPI:IPI00325635 PIR:I84692 RefSeq:NP_062201.2
UniGene:Rn.88129 ProteinModelPortal:Q07917 SMR:Q07917 STRING:Q07917
PhosphoSite:Q07917 PRIDE:Q07917 Ensembl:ENSRNOT00000041394
GeneID:54278 KEGG:rno:54278 InParanoid:Q07917 NextBio:610844
ArrayExpress:Q07917 Genevestigator:Q07917
GermOnline:ENSRNOG00000005600 Uniprot:Q07917
Length = 598
Score = 189 (71.6 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 45/102 (44%), Positives = 61/102 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCLAVGM ++ VR + R R
Sbjct: 284 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGR-R 342
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETA---GPVQSLPSSTELD 101
R S+ S + + PP SL +A V S P+ T LD
Sbjct: 343 GRLPSKPKSPQ-DPSPPSPPVSLISALVRAHVDSNPAMTSLD 383
Score = 94 (38.1 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF +T S++ + +A+++PGF DL + DQ +L + F EL++ Y S + L
Sbjct: 404 QQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSN-PVEGKL 462
Query: 223 TFSDGMYVTRQQ 234
F +G+ + R Q
Sbjct: 463 IFCNGVVLHRLQ 474
>UNIPROTKB|E2RBX8 [details] [associations]
symbol:NR4A2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071542 "dopaminergic neuron differentiation"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043576
"regulation of respiratory gaseous exchange" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043085 "positive regulation of catalytic
activity" evidence=IEA] [GO:0042551 "neuron maturation"
evidence=IEA] [GO:0042416 "dopamine biosynthetic process"
evidence=IEA] [GO:0042053 "regulation of dopamine metabolic
process" evidence=IEA] [GO:0033554 "cellular response to stress"
evidence=IEA] [GO:0031668 "cellular response to extracellular
stimulus" evidence=IEA] [GO:0021986 "habenula development"
evidence=IEA] [GO:0021952 "central nervous system projection neuron
axonogenesis" evidence=IEA] [GO:0016265 "death" evidence=IEA]
[GO:0009791 "post-embryonic development" evidence=IEA] [GO:0008344
"adult locomotory behavior" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001975 "response to amphetamine" evidence=IEA]
[GO:0001764 "neuron migration" evidence=IEA] [GO:0001666 "response
to hypoxia" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003070 InterPro:IPR003073 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01284 PRINTS:PR01287 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0043085 GO:GO:0001764 GO:GO:0033554 GO:GO:0046872
GO:GO:0071542 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0001666 GO:GO:0045944 GO:GO:0008344 GO:GO:0001975
GO:GO:0043524 GO:GO:0009791 GO:GO:0042416 GO:GO:0021952
GO:GO:0042053 GO:GO:0016265 GO:GO:0030522 GO:GO:0043576
GO:GO:0042551 GeneTree:ENSGT00640000091364 GO:GO:0021986
OMA:MWEDPGS EMBL:AAEX03017669 Ensembl:ENSCAFT00000014654
NextBio:20854035 Uniprot:E2RBX8
Length = 609
Score = 189 (71.6 bits), Expect = 2.7e-21, Sum P(2) = 2.7e-21
Identities = 45/102 (44%), Positives = 61/102 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCLAVGM ++ VR + R R
Sbjct: 295 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGR-R 353
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETA---GPVQSLPSSTELD 101
R S+ S + + PP SL +A V S P+ T LD
Sbjct: 354 GRLPSKPKSPQ-EPSPPSPPVSLISALVRAHVDSNPAMTSLD 394
Score = 94 (38.1 bits), Expect = 2.7e-21, Sum P(2) = 2.7e-21
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF +T S++ + +A+++PGF DL + DQ +L + F EL++ Y S + L
Sbjct: 415 QQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSN-PVEGKL 473
Query: 223 TFSDGMYVTRQQ 234
F +G+ + R Q
Sbjct: 474 IFCNGVVLHRLQ 485
>UNIPROTKB|F5H4G9 [details] [associations]
symbol:NR4A2 "Nuclear receptor subfamily 4 group A member
2" species:9606 "Homo sapiens" [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003070 InterPro:IPR003073 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01284 PRINTS:PR01287 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0030522 OMA:MWEDPGS EMBL:AC074099 HGNC:HGNC:7981
ChiTaRS:NR4A2 IPI:IPI00018033 ProteinModelPortal:F5H4G9 SMR:F5H4G9
Ensembl:ENST00000539077 ArrayExpress:F5H4G9 Bgee:F5H4G9
Uniprot:F5H4G9
Length = 609
Score = 189 (71.6 bits), Expect = 2.7e-21, Sum P(2) = 2.7e-21
Identities = 45/102 (44%), Positives = 61/102 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCLAVGM ++ VR + R R
Sbjct: 295 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGR-R 353
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETA---GPVQSLPSSTELD 101
R S+ S + + PP SL +A V S P+ T LD
Sbjct: 354 GRLPSKPKSPQ-EPSPPSPPVSLISALVRAHVDSNPAMTSLD 394
Score = 94 (38.1 bits), Expect = 2.7e-21, Sum P(2) = 2.7e-21
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF +T S++ + +A+++PGF DL + DQ +L + F EL++ Y S + L
Sbjct: 415 QQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSN-PVEGKL 473
Query: 223 TFSDGMYVTRQQ 234
F +G+ + R Q
Sbjct: 474 IFCNGVVLHRLQ 485
>UNIPROTKB|F1NRA6 [details] [associations]
symbol:PPARA "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003074
InterPro:IPR003076 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PRINTS:PR01289 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
GeneTree:ENSGT00700000104361 EMBL:AADN02006773 EMBL:AADN02006774
EMBL:AADN02006775 EMBL:AADN02006776 EMBL:AADN02006777
EMBL:AADN02006778 EMBL:AADN02006779 IPI:IPI00593462
Ensembl:ENSGALT00000037308 ArrayExpress:F1NRA6 Uniprot:F1NRA6
Length = 468
Score = 182 (69.1 bits), Expect = 2.9e-21, Sum P(2) = 2.9e-21
Identities = 34/75 (45%), Positives = 54/75 (72%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y +C D C + + NRN+CQYCRF+KCL+VGMS +++R+GR+P+
Sbjct: 123 KGFFRRTIRLKLIYDKC--DRNCKIQKKNRNKCQYCRFQKCLSVGMSHNAIRFGRMPRSE 180
Query: 62 RERSDSE--TGSTRV 74
+ + +E TG V
Sbjct: 181 KAKLKAEILTGENYV 195
Score = 97 (39.2 bits), Expect = 2.9e-21, Sum P(2) = 2.9e-21
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSDGMYVTRQ 233
+V ++ EFAK +PGF +L +DQ+ L+K G +E ++ S + D L ++TR+
Sbjct: 283 TVTKLTEFAKSIPGFSNLDLNDQVTLLKYGVYEAIFAMLASVMNKDGMLVAYGNGFITRE 342
Query: 234 QLE 236
L+
Sbjct: 343 FLK 345
>UNIPROTKB|F1NX54 [details] [associations]
symbol:PPARA "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003074
InterPro:IPR003076 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PRINTS:PR01289 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
GeneTree:ENSGT00700000104361 EMBL:AADN02006773 EMBL:AADN02006774
EMBL:AADN02006775 EMBL:AADN02006776 EMBL:AADN02006777
EMBL:AADN02006778 EMBL:AADN02006779 IPI:IPI00818507
ProteinModelPortal:F1NX54 Ensembl:ENSGALT00000023026 OMA:PCKINIA
ArrayExpress:F1NX54 Uniprot:F1NX54
Length = 474
Score = 182 (69.1 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 34/75 (45%), Positives = 54/75 (72%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y +C D C + + NRN+CQYCRF+KCL+VGMS +++R+GR+P+
Sbjct: 125 KGFFRRTIRLKLIYDKC--DRNCKIQKKNRNKCQYCRFQKCLSVGMSHNAIRFGRMPRSE 182
Query: 62 RERSDSE--TGSTRV 74
+ + +E TG V
Sbjct: 183 KAKLKAEILTGENYV 197
Score = 97 (39.2 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSDGMYVTRQ 233
+V ++ EFAK +PGF +L +DQ+ L+K G +E ++ S + D L ++TR+
Sbjct: 285 TVTKLTEFAKSIPGFSNLDLNDQVTLLKYGVYEAIFAMLASVMNKDGMLVAYGNGFITRE 344
Query: 234 QLE 236
L+
Sbjct: 345 FLK 347
>UNIPROTKB|Q08E53 [details] [associations]
symbol:NR4A2 "Nuclear receptor subfamily 4 group A member
2" species:9913 "Bos taurus" [GO:0071542 "dopaminergic neuron
differentiation" evidence=ISS] [GO:0006351 "transcription,
DNA-dependent" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043576 "regulation of
respiratory gaseous exchange" evidence=IEA] [GO:0043524 "negative
regulation of neuron apoptotic process" evidence=IEA] [GO:0043085
"positive regulation of catalytic activity" evidence=IEA]
[GO:0042551 "neuron maturation" evidence=IEA] [GO:0042416 "dopamine
biosynthetic process" evidence=IEA] [GO:0042053 "regulation of
dopamine metabolic process" evidence=IEA] [GO:0033554 "cellular
response to stress" evidence=IEA] [GO:0031668 "cellular response to
extracellular stimulus" evidence=IEA] [GO:0021986 "habenula
development" evidence=IEA] [GO:0021952 "central nervous system
projection neuron axonogenesis" evidence=IEA] [GO:0016265 "death"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0008344 "adult locomotory behavior" evidence=IEA]
[GO:0001975 "response to amphetamine" evidence=IEA] [GO:0001764
"neuron migration" evidence=IEA] [GO:0001666 "response to hypoxia"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003070 InterPro:IPR003073 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01284 PRINTS:PR01287 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0043085 GO:GO:0001764 GO:GO:0033554 GO:GO:0046872
GO:GO:0071542 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0001666 GO:GO:0045944 GO:GO:0008344 GO:GO:0001975
GO:GO:0043524 GO:GO:0006351 GO:GO:0009791 GO:GO:0042416
GO:GO:0021952 GO:GO:0042053 GO:GO:0016265 GO:GO:0030522
GO:GO:0043576 GO:GO:0042551 eggNOG:NOG245120 KO:K08558
GeneTree:ENSGT00640000091364 GO:GO:0021986 HOGENOM:HOG000230925
HOVERGEN:HBG052663 EMBL:BC123415 IPI:IPI00708375
RefSeq:NP_001069676.1 UniGene:Bt.25332 ProteinModelPortal:Q08E53
SMR:Q08E53 STRING:Q08E53 Ensembl:ENSBTAT00000004758 GeneID:540245
KEGG:bta:540245 CTD:4929 InParanoid:Q08E53 OMA:MWEDPGS
OrthoDB:EOG40CHGK NextBio:20878513 Uniprot:Q08E53
Length = 598
Score = 189 (71.6 bits), Expect = 3.3e-21, Sum P(2) = 3.3e-21
Identities = 45/102 (44%), Positives = 61/102 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCLAVGM ++ VR + R R
Sbjct: 284 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGR-R 342
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETA---GPVQSLPSSTELD 101
R S+ S + + PP SL +A V S P+ T LD
Sbjct: 343 GRLPSKPKSPQ-EPSPPSPPVSLISALVRAHVDSNPAMTSLD 383
Score = 93 (37.8 bits), Expect = 3.3e-21, Sum P(2) = 3.3e-21
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF +T S++ + +A+++PGF DL + DQ +L + F EL++ Y S + L
Sbjct: 404 QQFYDLLTGSMEIIRGWAEKIPGFTDLPKADQDLLFESAFLELFVLRLAYRSN-PVEGKL 462
Query: 223 TFSDGMYVTRQQ 234
F +G+ + R Q
Sbjct: 463 IFCNGVVLHRLQ 474
>UNIPROTKB|E1B7S6 [details] [associations]
symbol:NR4A3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000108 "positive regulation of leukocyte apoptotic
process" evidence=IEA] [GO:0060005 "vestibular reflex"
evidence=IEA] [GO:0050885 "neuromuscular process controlling
balance" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0045787 "positive regulation of
cell cycle" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IEA] [GO:0033554 "cellular response to
stress" evidence=IEA] [GO:0030534 "adult behavior" evidence=IEA]
[GO:0021766 "hippocampus development" evidence=IEA] [GO:0007411
"axon guidance" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0001707 "mesoderm formation"
evidence=IEA] [GO:0001077 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003070
InterPro:IPR003072 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01284 PRINTS:PR01286 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0007411 GO:GO:0021766
GO:GO:0033554 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0050885 GO:GO:0043524 GO:GO:0005667
GO:GO:0001077 GO:GO:0001707 GO:GO:0030534 GO:GO:0030522
GO:GO:0045787 GO:GO:0048752 GeneTree:ENSGT00640000091364
OMA:PSTSMYF GO:GO:2000108 GO:GO:0060005 EMBL:DAAA02023278
EMBL:DAAA02023279 IPI:IPI00701881 Ensembl:ENSBTAT00000002429
Uniprot:E1B7S6
Length = 637
Score = 179 (68.1 bits), Expect = 3.4e-21, Sum P(2) = 3.4e-21
Identities = 47/126 (37%), Positives = 71/126 (56%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRY-------G 55
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCL+VGM ++ VR G
Sbjct: 324 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRG 383
Query: 56 RVPKRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSST--ELDTKQLLTYDVILA 113
R+P S+ +S + +++ S PP + A V++L ST +LD + D A
Sbjct: 384 RLP--SKPKSPLQQEASQPSPPS--PPICMMNA-LVRALTDSTPRDLDYSRYCPTDQAAA 438
Query: 114 VSQAHH 119
+ A H
Sbjct: 439 GTDAEH 444
Score = 104 (41.7 bits), Expect = 3.4e-21, Sum P(2) = 3.4e-21
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVS-RLTT-DSSLT 223
QQF +T S+ +A+++PGF DL ++DQ +LI+ F EL++ +S R T +
Sbjct: 446 QQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNTAEDKFV 505
Query: 224 FSDGMYVTRQQ 234
F +G+ + R Q
Sbjct: 506 FCNGLVLHRLQ 516
>UNIPROTKB|O35507 [details] [associations]
symbol:PPARA "Peroxisome proliferator-activated receptor
alpha" species:10141 "Cavia porcellus" [GO:0008144 "drug binding"
evidence=ISS] [GO:0008289 "lipid binding" evidence=ISS] [GO:0032099
"negative regulation of appetite" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003074 InterPro:IPR003076 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01289 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0045893 GO:GO:0046872 GO:GO:0008144 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0046321 GO:GO:0010887
GO:GO:0000122 GO:GO:0010891 GO:GO:0008289 GO:GO:0042060
GO:GO:0008544 GO:GO:0070166 GO:GO:0032099 eggNOG:NOG266867
GeneTree:ENSGT00700000104361 GO:GO:0072363 GO:GO:0072369
GO:GO:0010871 CTD:5465 HOGENOM:HOG000261626 HOVERGEN:HBG106004
OMA:ICPLSPL OrthoDB:EOG4FFD1Q GO:GO:0072366 EMBL:AJ000222
RefSeq:NP_001166475.1 ProteinModelPortal:O35507 SMR:O35507
STRING:O35507 Ensembl:ENSCPOT00000001502 GeneID:100135604
InParanoid:O35507 Uniprot:O35507
Length = 467
Score = 185 (70.2 bits), Expect = 3.5e-21, Sum P(2) = 3.5e-21
Identities = 34/79 (43%), Positives = 55/79 (69%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y +C D C + + NRN+CQYCRF KCL+VGMS +++R+GR+P+
Sbjct: 123 KGFFRRTIRLKLVYDKC--DRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSE 180
Query: 62 RERSDSETGSTRVSTTGAE 80
+ + +E + + GAE
Sbjct: 181 KAKLKAEVLTCDRDSEGAE 199
Score = 93 (37.8 bits), Expect = 3.5e-21, Sum P(2) = 3.5e-21
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFE-LWIGYVSRLTTDSSLTFSDGMYVTRQ 233
+V + EFAK +PGF L +DQ+ L+K G +E ++ S + D L ++TR+
Sbjct: 283 TVTNLTEFAKAIPGFASLDLNDQVTLLKYGVYEAIFTMLSSTMNKDGMLVAYGHGFITRE 342
Query: 234 QLE 236
L+
Sbjct: 343 FLK 345
>UNIPROTKB|E9PBQ4 [details] [associations]
symbol:NR4A2 "Nuclear receptor subfamily 4 group A member
2" species:9606 "Homo sapiens" [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003070 InterPro:IPR003073 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01284 PRINTS:PR01287 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
EMBL:AC074099 HGNC:HGNC:7981 ChiTaRS:NR4A2 IPI:IPI00924923
SMR:E9PBQ4 Ensembl:ENST00000417764 Ensembl:ENST00000417972
Uniprot:E9PBQ4
Length = 392
Score = 189 (71.6 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 45/102 (44%), Positives = 61/102 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCLAVGM ++ VR + R R
Sbjct: 221 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGR-R 279
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETA---GPVQSLPSSTELD 101
R S+ S + + PP SL +A V S P+ T LD
Sbjct: 280 GRLPSKPKSPQ-EPSPPSPPVSLISALVRAHVDSNPAMTSLD 320
Score = 85 (35.0 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
QQF +T S++ + +A+++PGF DL + DQ +L + F EL++
Sbjct: 341 QQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFV 385
>ZFIN|ZDB-GENE-990415-212 [details] [associations]
symbol:pparda "peroxisome proliferator-activated
receptor delta a" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006950 "response to stress" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003074
InterPro:IPR003075 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PRINTS:PR01290 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-990415-212 GO:GO:0005634
GO:GO:0006950 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0030522 GeneTree:ENSGT00700000104361
EMBL:FP067424 IPI:IPI00488450 Ensembl:ENSDART00000123458
Ensembl:ENSDART00000149743 Uniprot:F1QJT0
Length = 496
Score = 182 (69.1 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 31/63 (49%), Positives = 49/63 (77%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY RC R C + + +RN+CQ+CRF+KCL +GMS D++RYGR+P+
Sbjct: 150 KGFFRRTIRMKLEYERCERS--CKIQKKSRNKCQFCRFQKCLMLGMSHDAIRYGRMPEAE 207
Query: 62 RER 64
+ +
Sbjct: 208 KRK 210
Score = 97 (39.2 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+V+ + EF+K +PGF DL +DQ+ L+K G E + L L ++G +VTR+
Sbjct: 311 TVRELTEFSKSIPGFIDLFLNDQVTLLKYGVHEAIFAMLPSLMNKDGLLVANGRGFVTRE 370
Query: 234 QL 235
L
Sbjct: 371 FL 372
>UNIPROTKB|F1MX52 [details] [associations]
symbol:RXRA "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070644 "vitamin D response element binding"
evidence=IEA] [GO:0060687 "regulation of branching involved in
prostate gland morphogenesis" evidence=IEA] [GO:0060528 "secretory
columnal luminar epithelial cell differentiation involved in
prostate glandular acinus development" evidence=IEA] [GO:0060038
"cardiac muscle cell proliferation" evidence=IEA] [GO:0055012
"ventricular cardiac muscle cell differentiation" evidence=IEA]
[GO:0055010 "ventricular cardiac muscle tissue morphogenesis"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044323
"retinoic acid-responsive element binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0042809 "vitamin D receptor binding" evidence=IEA] [GO:0035357
"peroxisome proliferator activated receptor signaling pathway"
evidence=IEA] [GO:0031490 "chromatin DNA binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019048 "virus-host
interaction" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0004886 "9-cis retinoic acid receptor activity"
evidence=IEA] [GO:0001893 "maternal placenta development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0019048 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0000122
GO:GO:0000790 GO:GO:0031490 GO:GO:0060038 GO:GO:0055010
GO:GO:0060687 GO:GO:0060528 GeneTree:ENSGT00690000101777
GO:GO:0035357 GO:GO:0055012 GO:GO:0044323 GO:GO:0004886
InterPro:IPR021780 Pfam:PF11825 OMA:KHFLPLD GO:GO:0070644
EMBL:DAAA02032421 EMBL:DAAA02032422 EMBL:DAAA02032423
IPI:IPI00722888 Ensembl:ENSBTAT00000023729 Uniprot:F1MX52
Length = 474
Score = 184 (69.8 bits), Expect = 3.7e-21, Sum P(2) = 3.7e-21
Identities = 34/71 (47%), Positives = 53/71 (74%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+++K + Y C RD K CL+ + RNRCQYCR++KCLA+GM R++V+ R +R
Sbjct: 168 KGFFKRTVRKDLTYTC-RDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRG 224
Query: 62 RERSDSETGST 72
++R +SE S+
Sbjct: 225 KDRGESEVESS 235
Score = 94 (38.1 bits), Expect = 3.7e-21, Sum P(2) = 3.7e-21
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 291 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHR 346
>UNIPROTKB|F1NWE9 [details] [associations]
symbol:THRB "Thyroid hormone receptor beta" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007621 "negative regulation of female
receptivity" evidence=IEA] [GO:0008016 "regulation of heart
contraction" evidence=IEA] [GO:0008050 "female courtship behavior"
evidence=IEA] [GO:0009887 "organ morphogenesis" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0031490 "chromatin
DNA binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR001728 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0008016 GO:GO:0000122
GO:GO:0031490 GO:GO:0004887 GeneTree:ENSGT00680000099662
OMA:HLIQATW EMBL:AADN02001118 EMBL:AADN02001120 EMBL:AADN02001121
EMBL:AADN02001122 EMBL:AADN02001123 EMBL:AADN02001124
EMBL:AADN02001119 IPI:IPI00822476 Ensembl:ENSGALT00000018424
ArrayExpress:F1NWE9 Uniprot:F1NWE9
Length = 445
Score = 160 (61.4 bits), Expect = 3.9e-21, Sum P(2) = 3.9e-21
Identities = 37/91 (40%), Positives = 52/91 (57%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYG--RVP 58
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V R+
Sbjct: 112 KGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLA 171
Query: 59 KRS--RERSDSETGSTRVSTTGAEP-PSSLE 86
KR E + T G +P P+ E
Sbjct: 172 KRKLIEENREKRRREELQKTIGHKPEPTDEE 202
Score = 127 (49.8 bits), Expect = 3.9e-21, Sum P(2) = 3.9e-21
Identities = 30/74 (40%), Positives = 47/74 (63%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ QF +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +L
Sbjct: 253 FSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 312
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 313 TLNGEMAVTRGQLK 326
>ZFIN|ZDB-GENE-980526-436 [details] [associations]
symbol:rxrba "retinoid x receptor, beta a"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043401 "steroid hormone mediated signaling pathway"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0001071 "nucleic acid binding
transcription factor activity" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-980526-436 GO:GO:0005634
GO:GO:0045892 GO:GO:0046872 eggNOG:NOG327099 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 HOVERGEN:HBG005606 GeneTree:ENSGT00690000101777
EMBL:BX890617 HOGENOM:HOG000260821 GO:GO:0004886 InterPro:IPR021780
Pfam:PF11825 EMBL:AL672176 EMBL:BC054649 EMBL:U29942 EMBL:U93483
IPI:IPI00758810 PIR:I50517 RefSeq:NP_571350.1 UniGene:Dr.351
ProteinModelPortal:Q7SYN5 SMR:Q7SYN5 STRING:Q7SYN5
Ensembl:ENSDART00000009755 Ensembl:ENSDART00000102075 GeneID:30530
KEGG:dre:30530 CTD:30530 InParanoid:Q7SYN5 KO:K08525
NextBio:20806913 ArrayExpress:Q7SYN5 Bgee:Q7SYN5 Uniprot:Q7SYN5
Length = 471
Score = 174 (66.3 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 35/81 (43%), Positives = 51/81 (62%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVR--YGRVPK 59
+GFF+R+++K + Y C RD K CLV + RNRCQYCR++KCLA+GM R+ V+ R +
Sbjct: 146 KGFFKRTVRKDLSYTC-RDNKDCLVDKRQRNRCQYCRYQKCLAMGMKREVVQDERQRSVQ 204
Query: 60 RSRERSDSETGSTRVSTTGAE 80
R+R+ G S+ E
Sbjct: 205 EERQRNKERDGEVESSSAANE 225
Score = 104 (41.7 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F +LS DDQ+IL++ G+ EL I S +T + + G++V R
Sbjct: 274 LVEWAKRIPHFSELSLDDQVILLRAGWNELLIASFSHRSITVKDGILLATGLHVHR 329
>UNIPROTKB|P51128 [details] [associations]
symbol:rxra "Retinoic acid receptor RXR-alpha" species:8355
"Xenopus laevis" [GO:0046966 "thyroid hormone receptor binding"
evidence=IPI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351
HOVERGEN:HBG005606 InterPro:IPR021780 Pfam:PF11825 EMBL:L11446
PIR:C41977 ProteinModelPortal:P51128 SMR:P51128 Uniprot:P51128
Length = 488
Score = 184 (69.8 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
Identities = 36/91 (39%), Positives = 59/91 (64%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+++K + Y C RD K C++ + RNRCQYCR++KCLA+GM R++V+ R +R
Sbjct: 182 KGFFKRTVRKDLTYTC-RDSKDCMIDKRQRNRCQYCRYQKCLAMGMKREAVQEER--QRG 238
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ 92
+ER+++E S+ + LE V+
Sbjct: 239 KERNENEVESSNSANEDMPVEKILEAEHAVE 269
Score = 94 (38.1 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+VE+AKR+P F +L DDQ+IL++ G+ EL I S + + + G++V R
Sbjct: 305 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHR 360
>UNIPROTKB|P04625 [details] [associations]
symbol:THRA "Thyroid hormone receptor alpha" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887 HOVERGEN:HBG005606
PDB:3UVV PDBsum:3UVV CTD:7067 KO:K05547 EMBL:X04854 EMBL:Y00987
IPI:IPI00600673 PIR:A25236 RefSeq:NP_990644.1 UniGene:Gga.725
ProteinModelPortal:P04625 SMR:P04625 IntAct:P04625 STRING:P04625
GeneID:396251 KEGG:gga:396251 eggNOG:NOG239523 BindingDB:P04625
NextBio:20816303 Uniprot:P04625
Length = 408
Score = 161 (61.7 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 36/75 (48%), Positives = 48/75 (64%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYG--RVP 58
+GFFRR+IQK + Y C DG C++ ++ RN+CQ CRFKKC++VGM+ D V RV
Sbjct: 72 KGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVA 131
Query: 59 KR-----SRERSDSE 68
KR +RER E
Sbjct: 132 KRKLIEENRERRRKE 146
Score = 115 (45.5 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ +F +TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +L
Sbjct: 213 FSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 272
Query: 223 TFSDGMYVTRQQLE 236
T S M V R+QL+
Sbjct: 273 TLSGEMAVKREQLK 286
>UNIPROTKB|Q95N78 [details] [associations]
symbol:PPARA "Peroxisome proliferator-activated receptor
alpha" species:9615 "Canis lupus familiaris" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0019217 "regulation of fatty acid metabolic process"
evidence=ISS] [GO:0008544 "epidermis development" evidence=ISS]
[GO:0006631 "fatty acid metabolic process" evidence=ISS]
[GO:0004872 "receptor activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0008289 "lipid binding" evidence=ISS]
[GO:0008144 "drug binding" evidence=ISS] [GO:0032099 "negative
regulation of appetite" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0072369 "regulation of lipid transport by
positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0072366 "regulation of cellular ketone
metabolic process by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0072363 "regulation of
glycolysis by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0070166 "enamel
mineralization" evidence=IEA] [GO:0046321 "positive regulation of
fatty acid oxidation" evidence=IEA] [GO:0042060 "wound healing"
evidence=IEA] [GO:0031624 "ubiquitin conjugating enzyme binding"
evidence=IEA] [GO:0010891 "negative regulation of sequestering of
triglyceride" evidence=IEA] [GO:0010887 "negative regulation of
cholesterol storage" evidence=IEA] [GO:0010871 "negative regulation
of receptor biosynthetic process" evidence=IEA] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0001103 "RNA
polymerase II repressing transcription factor binding"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003074
InterPro:IPR003076 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PRINTS:PR01289 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0008144 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0004872 GO:GO:0006631 GO:GO:0003700
GO:GO:0019217 GO:GO:0046321 GO:GO:0010887 GO:GO:0000122
GO:GO:0010891 GO:GO:0008289 GO:GO:0042060 GO:GO:0008544
GO:GO:0070166 GO:GO:0032099 eggNOG:NOG266867
GeneTree:ENSGT00700000104361 GO:GO:0072363 GO:GO:0072369
GO:GO:0010871 EMBL:AF350327 RefSeq:NP_001003093.1 UniGene:Cfa.3519
ProteinModelPortal:Q95N78 SMR:Q95N78 STRING:Q95N78
Ensembl:ENSCAFT00000001222 GeneID:403654 KEGG:cfa:403654 CTD:5465
HOGENOM:HOG000261626 HOVERGEN:HBG106004 InParanoid:Q95N78 KO:K07294
OMA:ICPLSPL OrthoDB:EOG4FFD1Q BindingDB:Q95N78 ChEMBL:CHEMBL2847
NextBio:20817159 GO:GO:0072366 Uniprot:Q95N78
Length = 468
Score = 181 (68.8 bits), Expect = 4.7e-21, Sum P(2) = 4.7e-21
Identities = 36/87 (41%), Positives = 56/87 (64%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y +C D C + + NRN+CQYCRF KCL+VGMS +++R+GR+P+
Sbjct: 123 KGFFRRTIRLKLAYDKC--DRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSE 180
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETA 88
+ + +E T + P ETA
Sbjct: 181 KAKLKAEI------LTCEQDPEDAETA 201
Score = 96 (38.9 bits), Expect = 4.7e-21, Sum P(2) = 4.7e-21
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR-LTTDSSLTFSDGMYVTRQ 233
+V + EFAK +PGF +L +DQ+ L+K G +E +S + D L ++TR+
Sbjct: 283 TVTELTEFAKSIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITRE 342
Query: 234 QLE 236
L+
Sbjct: 343 FLK 345
>RGD|3369 [details] [associations]
symbol:Ppara "peroxisome proliferator activated receptor alpha"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0001103 "RNA polymerase II repressing transcription factor
binding" evidence=IEA;ISO] [GO:0001666 "response to hypoxia"
evidence=IDA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0003707 "steroid hormone receptor activity"
evidence=ISO;TAS] [GO:0004872 "receptor activity" evidence=ISO]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=ISO;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006631 "fatty acid metabolic
process" evidence=ISO;IMP] [GO:0007507 "heart development"
evidence=IEP] [GO:0008144 "drug binding" evidence=ISO;ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008289 "lipid
binding" evidence=ISO;ISS] [GO:0008544 "epidermis development"
evidence=IEA;ISO] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010745 "negative regulation of macrophage derived
foam cell differentiation" evidence=ISO] [GO:0010871 "negative
regulation of receptor biosynthetic process" evidence=IEA;ISO]
[GO:0010887 "negative regulation of cholesterol storage"
evidence=IEA;ISO] [GO:0010891 "negative regulation of sequestering of
triglyceride" evidence=IEA;ISO] [GO:0019217 "regulation of fatty acid
metabolic process" evidence=ISO;TAS] [GO:0019902 "phosphatase
binding" evidence=IPI] [GO:0019904 "protein domain specific binding"
evidence=IDA] [GO:0030522 "intracellular receptor mediated signaling
pathway" evidence=ISO] [GO:0031624 "ubiquitin conjugating enzyme
binding" evidence=IEA;ISO] [GO:0032091 "negative regulation of
protein binding" evidence=IMP] [GO:0032099 "negative regulation of
appetite" evidence=ISO;ISS] [GO:0032403 "protein complex binding"
evidence=IMP] [GO:0032868 "response to insulin stimulus"
evidence=IMP] [GO:0035095 "behavioral response to nicotine"
evidence=IDA] [GO:0042060 "wound healing" evidence=IEA;ISO]
[GO:0042157 "lipoprotein metabolic process" evidence=IMP] [GO:0043565
"sequence-specific DNA binding" evidence=IEA;ISO] [GO:0045776
"negative regulation of blood pressure" evidence=IMP] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=ISO;ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0046321 "positive
regulation of fatty acid oxidation" evidence=IEA;ISO] [GO:0051525
"NFAT protein binding" evidence=IPI] [GO:0070166 "enamel
mineralization" evidence=IEA;ISO] [GO:0072363 "regulation of
glycolysis by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0072366 "regulation of
cellular ketone metabolic process by positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0072369 "regulation of lipid transport by positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0097371 "MDM2/MDM4 family protein binding" evidence=IPI]
[GO:1901215 "negative regulation of neuron death" evidence=IMP;IDA]
[GO:2000678 "negative regulation of transcription regulatory region
DNA binding" evidence=IMP] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003076
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01289
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430 RGD:3369
GO:GO:0005634 GO:GO:0019904 GO:GO:0045893 GO:GO:0007507 GO:GO:0032403
GO:GO:0046872 GO:GO:0008144 GO:GO:0035095 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0001666 GO:GO:1901215 GO:GO:0045776
GO:GO:0006631 GO:GO:0019217 GO:GO:0046321 GO:GO:0042157 GO:GO:0010887
GO:GO:0032868 GO:GO:0000122 GO:GO:0010891 GO:GO:0008289 GO:GO:0032091
GO:GO:0042060 GO:GO:0008544 GO:GO:0070166 GO:GO:0032099
eggNOG:NOG266867 GeneTree:ENSGT00700000104361 GO:GO:2000678
GO:GO:0072363 GO:GO:0072369 GO:GO:0010871 CTD:5465
HOGENOM:HOG000261626 HOVERGEN:HBG106004 KO:K07294 OMA:ICPLSPL
OrthoDB:EOG4FFD1Q GO:GO:0072366 EMBL:M88592 IPI:IPI00204351
PIR:A45288 RefSeq:NP_037328.1 UniGene:Rn.9753
ProteinModelPortal:P37230 SMR:P37230 DIP:DIP-29529N STRING:P37230
PhosphoSite:P37230 PRIDE:P37230 Ensembl:ENSRNOT00000030082
GeneID:25747 KEGG:rno:25747 InParanoid:P37230 BindingDB:P37230
ChEMBL:CHEMBL2129 NextBio:607925 Genevestigator:P37230
GermOnline:ENSRNOG00000021463 Uniprot:P37230
Length = 468
Score = 180 (68.4 bits), Expect = 4.8e-21, Sum P(2) = 4.8e-21
Identities = 31/67 (46%), Positives = 50/67 (74%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y +C D C + + NRN+CQYCRF KCL+VGMS +++R+GR+P+
Sbjct: 123 KGFFRRTIRLKLAYDKC--DRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSE 180
Query: 62 RERSDSE 68
+ + +E
Sbjct: 181 KAKLKAE 187
Score = 97 (39.2 bits), Expect = 4.8e-21, Sum P(2) = 4.8e-21
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+V + EFAK +PGF +L +DQ+ L+K G +E +S L + + G ++TR+
Sbjct: 283 TVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMNKDGMLIAYGNGFITRE 342
Query: 234 QLE 236
L+
Sbjct: 343 FLK 345
>UNIPROTKB|Q92570 [details] [associations]
symbol:NR4A3 "Nuclear receptor subfamily 4 group A member
3" species:9606 "Homo sapiens" [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0001077 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IEA]
[GO:0001707 "mesoderm formation" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0007411 "axon
guidance" evidence=IEA] [GO:0021766 "hippocampus development"
evidence=IEA] [GO:0030534 "adult behavior" evidence=IEA]
[GO:0031100 "organ regeneration" evidence=IEA] [GO:0033554
"cellular response to stress" evidence=IEA] [GO:0043434 "response
to peptide hormone stimulus" evidence=IEA] [GO:0043524 "negative
regulation of neuron apoptotic process" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0045787 "positive
regulation of cell cycle" evidence=IEA] [GO:0048752 "semicircular
canal morphogenesis" evidence=IEA] [GO:0050885 "neuromuscular
process controlling balance" evidence=IEA] [GO:0060005 "vestibular
reflex" evidence=IEA] [GO:2000108 "positive regulation of leukocyte
apoptotic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=NAS] [GO:0008150 "biological_process" evidence=ND]
[GO:0003677 "DNA binding" evidence=NAS] [GO:0004887 "thyroid
hormone receptor activity" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003070
InterPro:IPR003072 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01284 PRINTS:PR01286 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0007411 GO:GO:0021766
GO:GO:0005654 GO:GO:0033554 GO:GO:0046872 GO:GO:0003677
GO:GO:0031100 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0043434
GO:GO:0050885 GO:GO:0043524 GO:GO:0005667 GO:GO:0001077
EMBL:CH471105 GO:GO:0001707 GO:GO:0030534 GO:GO:0006367
GO:GO:0045787 GO:GO:0004887 GO:GO:0048752 MIM:612219 EMBL:AL358937
eggNOG:NOG245120 HOVERGEN:HBG052663 EMBL:D78579 EMBL:U12767
EMBL:S81243 EMBL:X89894 EMBL:AL359710 EMBL:D85241 EMBL:D85242
IPI:IPI00293038 IPI:IPI00328269 IPI:IPI00334557 PIR:S71930
RefSeq:NP_008912.2 RefSeq:NP_775291.1 RefSeq:NP_775292.1
UniGene:Hs.279522 ProteinModelPortal:Q92570 SMR:Q92570
STRING:Q92570 PhosphoSite:Q92570 DMDM:90110039 PaxDb:Q92570
PRIDE:Q92570 DNASU:8013 Ensembl:ENST00000330847
Ensembl:ENST00000338488 Ensembl:ENST00000395097 GeneID:8013
KEGG:hsa:8013 UCSC:uc004bae.3 UCSC:uc004baf.1 UCSC:uc022bky.1
CTD:8013 GeneCards:GC09P102584 HGNC:HGNC:7982 HPA:HPA043360
MIM:600542 neXtProt:NX_Q92570 PharmGKB:PA31763 InParanoid:Q92570
KO:K08559 OMA:PSTSMYF OrthoDB:EOG4894MB ChEMBL:CHEMBL1961792
ChiTaRS:NR4A3 GenomeRNAi:8013 NextBio:30567 ArrayExpress:Q92570
Bgee:Q92570 CleanEx:HS_NR4A3 CleanEx:HS_TEC Genevestigator:Q92570
GermOnline:ENSG00000119508 GO:GO:2000108 GO:GO:0060005
Uniprot:Q92570
Length = 626
Score = 177 (67.4 bits), Expect = 5.3e-21, Sum P(2) = 5.3e-21
Identities = 47/126 (37%), Positives = 70/126 (55%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRY-------G 55
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCL+VGM ++ VR G
Sbjct: 313 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRG 372
Query: 56 RVPKRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSST--ELDTKQLLTYDVILA 113
R+P S+ +S + ++ S PP + A V++L ST +LD + D A
Sbjct: 373 RLP--SKPKSPLQQEPSQPSPPS--PPICMMNA-LVRALTDSTPRDLDYSRYCPTDQAAA 427
Query: 114 VSQAHH 119
+ A H
Sbjct: 428 GTDAEH 433
Score = 104 (41.7 bits), Expect = 5.3e-21, Sum P(2) = 5.3e-21
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVS-RLTT-DSSLT 223
QQF +T S+ +A+++PGF DL ++DQ +LI+ F EL++ +S R T +
Sbjct: 435 QQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNTAEDKFV 494
Query: 224 FSDGMYVTRQQ 234
F +G+ + R Q
Sbjct: 495 FCNGLVLHRLQ 505
>UNIPROTKB|O97726 [details] [associations]
symbol:NOR-1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000108 "positive regulation of leukocyte apoptotic
process" evidence=IEA] [GO:0060005 "vestibular reflex"
evidence=IEA] [GO:0050885 "neuromuscular process controlling
balance" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0045787 "positive regulation of
cell cycle" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IEA] [GO:0033554 "cellular response to
stress" evidence=IEA] [GO:0030534 "adult behavior" evidence=IEA]
[GO:0021766 "hippocampus development" evidence=IEA] [GO:0007411
"axon guidance" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0001707 "mesoderm formation"
evidence=IEA] [GO:0001077 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003070
InterPro:IPR003072 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01284 PRINTS:PR01286 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0007411 GO:GO:0021766
GO:GO:0033554 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0050885 GO:GO:0043524 GO:GO:0005667
GO:GO:0001077 GO:GO:0001707 GO:GO:0030534 GO:GO:0030522
GO:GO:0045787 GO:GO:0048752 eggNOG:NOG245120
GeneTree:ENSGT00640000091364 HOGENOM:HOG000230925
HOVERGEN:HBG052663 HSSP:P43354 KO:K08559 OMA:PSTSMYF
OrthoDB:EOG4894MB GO:GO:2000108 GO:GO:0060005 EMBL:CU302447
EMBL:CU210903 EMBL:AJ011767 RefSeq:NP_999412.1 UniGene:Ssc.761
SMR:O97726 STRING:O97726 Ensembl:ENSSSCT00000005925 GeneID:397479
KEGG:ssc:397479 CTD:397479 Uniprot:O97726
Length = 643
Score = 177 (67.4 bits), Expect = 5.8e-21, Sum P(2) = 5.8e-21
Identities = 47/126 (37%), Positives = 70/126 (55%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRY-------G 55
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCL+VGM ++ VR G
Sbjct: 330 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRG 389
Query: 56 RVPKRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSST--ELDTKQLLTYDVILA 113
R+P S+ +S + ++ S PP + A V++L ST +LD + D A
Sbjct: 390 RLP--SKPKSPLQQEPSQPSPPS--PPVCMMNA-LVRALTDSTPRDLDYSRYCPADQAAA 444
Query: 114 VSQAHH 119
+ A H
Sbjct: 445 GTDAEH 450
Score = 104 (41.7 bits), Expect = 5.8e-21, Sum P(2) = 5.8e-21
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVS-RLTT-DSSLT 223
QQF +T S+ +A+++PGF DL ++DQ +LI+ F EL++ +S R T +
Sbjct: 452 QQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNTAEDKFV 511
Query: 224 FSDGMYVTRQQ 234
F +G+ + R Q
Sbjct: 512 FCNGLVLHRLQ 522
>MGI|MGI:104740 [details] [associations]
symbol:Ppara "peroxisome proliferator activated receptor
alpha" species:10090 "Mus musculus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=ISO] [GO:0001666 "response
to hypoxia" evidence=ISO] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISO;IMP] [GO:0003707 "steroid hormone receptor
activity" evidence=ISO;TAS] [GO:0004872 "receptor activity"
evidence=IDA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;TAS] [GO:0006006 "glucose
metabolic process" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISO;TAS] [GO:0006629 "lipid
metabolic process" evidence=TAS] [GO:0006631 "fatty acid metabolic
process" evidence=ISO;IMP;TAS] [GO:0008144 "drug binding"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008289 "lipid binding" evidence=ISO;IDA] [GO:0008544
"epidermis development" evidence=IMP] [GO:0010468 "regulation of
gene expression" evidence=IMP] [GO:0010745 "negative regulation of
macrophage derived foam cell differentiation" evidence=ISO]
[GO:0010871 "negative regulation of receptor biosynthetic process"
evidence=ISO] [GO:0010887 "negative regulation of cholesterol
storage" evidence=ISO] [GO:0010891 "negative regulation of
sequestering of triglyceride" evidence=ISO] [GO:0019217 "regulation
of fatty acid metabolic process" evidence=IMP] [GO:0019902
"phosphatase binding" evidence=ISO] [GO:0019904 "protein domain
specific binding" evidence=ISO] [GO:0030522 "intracellular receptor
mediated signaling pathway" evidence=ISO] [GO:0031624 "ubiquitin
conjugating enzyme binding" evidence=ISO] [GO:0032091 "negative
regulation of protein binding" evidence=ISO] [GO:0032099 "negative
regulation of appetite" evidence=IMP] [GO:0032403 "protein complex
binding" evidence=ISO] [GO:0032868 "response to insulin stimulus"
evidence=ISO] [GO:0035095 "behavioral response to nicotine"
evidence=ISO] [GO:0042060 "wound healing" evidence=IMP] [GO:0042157
"lipoprotein metabolic process" evidence=ISO] [GO:0043401 "steroid
hormone mediated signaling pathway" evidence=TAS] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045776 "negative
regulation of blood pressure" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO;IMP]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;IGI;IDA] [GO:0046321 "positive
regulation of fatty acid oxidation" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=TAS] [GO:0051525 "NFAT
protein binding" evidence=ISO] [GO:0070166 "enamel mineralization"
evidence=IMP] [GO:0072363 "regulation of glycolysis by positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0072366 "regulation of cellular ketone metabolic
process by positive regulation of transcription from RNA polymerase
II promoter" evidence=ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0097371 "MDM2/MDM4 family
protein binding" evidence=ISO] [GO:1901215 "negative regulation of
neuron death" evidence=ISO] [GO:2000678 "negative regulation of
transcription regulatory region DNA binding" evidence=ISO]
Reactome:REACT_112621 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003076
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01289
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
MGI:MGI:104740 GO:GO:0005654 GO:GO:0007507 GO:GO:0046872
GO:GO:0008144 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0001666 GO:GO:0045944 GO:GO:0045776 GO:GO:0006631
GO:GO:0003700 GO:GO:0006006 GO:GO:0046321 GO:GO:0042157
GO:GO:0010887 GO:GO:0032868 GO:GO:0000122 GO:GO:0010891
GO:GO:0008289 GO:GO:0046982 GO:GO:0042060 GO:GO:0008544
GO:GO:0070166 Reactome:REACT_109335 Reactome:REACT_24972
GO:GO:0032099 eggNOG:NOG266867 GO:GO:0072363 GO:GO:0072369
GO:GO:0010871 CTD:5465 HOGENOM:HOG000261626 HOVERGEN:HBG106004
KO:K07294 OMA:ICPLSPL OrthoDB:EOG4FFD1Q GO:GO:0072366 EMBL:X57638
EMBL:X75289 EMBL:X75290 EMBL:X75291 EMBL:X75292 EMBL:X75293
EMBL:X75294 EMBL:BC016892 EMBL:X89577 IPI:IPI00314804 PIR:JC2085
RefSeq:NP_001106889.1 RefSeq:NP_035274.2 UniGene:Mm.212789
ProteinModelPortal:P23204 SMR:P23204 DIP:DIP-5958N IntAct:P23204
STRING:P23204 PhosphoSite:P23204 PRIDE:P23204
Ensembl:ENSMUST00000057979 Ensembl:ENSMUST00000109422
Ensembl:ENSMUST00000109423 GeneID:19013 KEGG:mmu:19013
InParanoid:P23204 BindingDB:P23204 ChEMBL:CHEMBL2128 NextBio:295428
Bgee:P23204 CleanEx:MM_PPARA Genevestigator:P23204
GermOnline:ENSMUSG00000022383 Uniprot:P23204
Length = 468
Score = 179 (68.1 bits), Expect = 6.1e-21, Sum P(2) = 6.1e-21
Identities = 31/67 (46%), Positives = 50/67 (74%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y +C D C + + NRN+CQYCRF KCL+VGMS +++R+GR+P+
Sbjct: 123 KGFFRRTIRLKLVYDKC--DRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSE 180
Query: 62 RERSDSE 68
+ + +E
Sbjct: 181 KAKLKAE 187
Score = 97 (39.2 bits), Expect = 6.1e-21, Sum P(2) = 6.1e-21
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+V + EFAK +PGF +L +DQ+ L+K G +E +S L + + G ++TR+
Sbjct: 283 TVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMNKDGMLIAYGNGFITRE 342
Query: 234 QLE 236
L+
Sbjct: 343 FLK 345
>UNIPROTKB|F1LP32 [details] [associations]
symbol:Thrb "Thyroid hormone receptor beta" species:10116
"Rattus norvegicus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 RGD:3858 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0008016 GO:GO:0000122
GO:GO:0009887 GO:GO:0007605 GO:GO:0031490 GO:GO:0004887
GO:GO:0007621 GO:GO:0008050 GeneTree:ENSGT00680000099662
IPI:IPI00655326 Ensembl:ENSRNOT00000061402 ArrayExpress:F1LP32
Uniprot:F1LP32
Length = 492
Score = 160 (61.4 bits), Expect = 7.1e-21, Sum P(2) = 7.1e-21
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV 52
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V
Sbjct: 159 EGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLV 210
Score = 126 (49.4 bits), Expect = 7.1e-21, Sum P(2) = 7.1e-21
Identities = 30/74 (40%), Positives = 46/74 (62%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ F +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R DS +L
Sbjct: 300 FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETL 359
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 360 TLNGEMAVTRGQLK 373
>UNIPROTKB|A4IFL4 [details] [associations]
symbol:PPARD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070539 "linoleic acid binding" evidence=IEA]
[GO:0060612 "adipose tissue development" evidence=IEA] [GO:0051546
"keratinocyte migration" evidence=IEA] [GO:0050680 "negative
regulation of epithelial cell proliferation" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045598 "regulation of fat cell differentiation"
evidence=IEA] [GO:0043616 "keratinocyte proliferation"
evidence=IEA] [GO:0042640 "anagen" evidence=IEA] [GO:0042060 "wound
healing" evidence=IEA] [GO:0031589 "cell-substrate adhesion"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0015908 "fatty acid transport" evidence=IEA] [GO:0014068
"positive regulation of phosphatidylinositol 3-kinase cascade"
evidence=IEA] [GO:0008366 "axon ensheathment" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0008144 "drug binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006635 "fatty acid
beta-oxidation" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003074 InterPro:IPR003075 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01290 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0006915 GO:GO:0045893 GO:GO:0043616 GO:GO:0030154
GO:GO:0046872 GO:GO:0008144 GO:GO:0008284 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0014068 GO:GO:0060612
GO:GO:0015908 GO:GO:0006635 GO:GO:0000122 GO:GO:0001890
GO:GO:0042060 GO:GO:0042640 GO:GO:0045598 GO:GO:0050680
GO:GO:0031589 GO:GO:0008366 eggNOG:NOG266867
GeneTree:ENSGT00700000104361 GO:GO:0070539 GO:GO:0051546
HOGENOM:HOG000261626 HOVERGEN:HBG106004 OrthoDB:EOG4FFD1Q CTD:5467
KO:K04504 OMA:SSLFLND EMBL:DAAA02054950 EMBL:BC134636
IPI:IPI00699355 RefSeq:NP_001077105.1 UniGene:Bt.13264 SMR:A4IFL4
STRING:A4IFL4 Ensembl:ENSBTAT00000023319 GeneID:353106
KEGG:bta:353106 InParanoid:A4IFL4 NextBio:20812691 Uniprot:A4IFL4
Length = 441
Score = 181 (68.8 bits), Expect = 7.4e-21, Sum P(2) = 7.4e-21
Identities = 31/63 (49%), Positives = 50/63 (79%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRMKLEYEKCERI--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 152
Query: 62 RER 64
+ +
Sbjct: 153 KRK 155
Score = 93 (37.8 bits), Expect = 7.4e-21, Sum P(2) = 7.4e-21
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+V+ + EFAK +P F DL +DQ+ L+K G E ++ + L ++G +VTR+
Sbjct: 256 TVRELTEFAKSIPSFGDLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGTGFVTRE 315
Query: 234 QL 235
L
Sbjct: 316 FL 317
>UNIPROTKB|Q07869 [details] [associations]
symbol:PPARA "Peroxisome proliferator-activated receptor
alpha" species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0001666 "response to hypoxia" evidence=IEA]
[GO:0006631 "fatty acid metabolic process" evidence=IEA]
[GO:0007507 "heart development" evidence=IEA] [GO:0008544
"epidermis development" evidence=IEA] [GO:0019902 "phosphatase
binding" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0032091 "negative regulation of protein
binding" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0032868 "response to insulin stimulus"
evidence=IEA] [GO:0035095 "behavioral response to nicotine"
evidence=IEA] [GO:0042060 "wound healing" evidence=IEA] [GO:0042157
"lipoprotein metabolic process" evidence=IEA] [GO:0045776 "negative
regulation of blood pressure" evidence=IEA] [GO:0051525 "NFAT
protein binding" evidence=IEA] [GO:0070166 "enamel mineralization"
evidence=IEA] [GO:0097371 "MDM2/MDM4 family protein binding"
evidence=IEA] [GO:1901215 "negative regulation of neuron death"
evidence=IEA] [GO:2000678 "negative regulation of transcription
regulatory region DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=TAS] [GO:0008144 "drug binding" evidence=IDA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IDA] [GO:0032099 "negative
regulation of appetite" evidence=ISS] [GO:0032000 "positive
regulation of fatty acid beta-oxidation" evidence=TAS] [GO:0015908
"fatty acid transport" evidence=TAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0008289 "lipid binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003677 "DNA binding" evidence=TAS]
[GO:0006629 "lipid metabolic process" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0044255 "cellular lipid metabolic
process" evidence=TAS] [GO:0044281 "small molecule metabolic
process" evidence=TAS] [GO:0010745 "negative regulation of
macrophage derived foam cell differentiation" evidence=IC;IDA]
[GO:0010887 "negative regulation of cholesterol storage"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0010871
"negative regulation of receptor biosynthetic process"
evidence=IDA] [GO:0010891 "negative regulation of sequestering of
triglyceride" evidence=IDA] [GO:0046321 "positive regulation of
fatty acid oxidation" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS;IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0031624 "ubiquitin
conjugating enzyme binding" evidence=IPI] [GO:0072366 "regulation
of cellular ketone metabolic process by positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0045820 "negative regulation of glycolysis" evidence=IC]
[GO:0003707 "steroid hormone receptor activity" evidence=IDA]
[GO:0072369 "regulation of lipid transport by positive regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0072363 "regulation of glycolysis by positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0001103 "RNA polymerase II repressing transcription factor
binding" evidence=IPI] [GO:0030522 "intracellular receptor mediated
signaling pathway" evidence=IDA] Reactome:REACT_71
Reactome:REACT_111217 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003076
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01289
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005654 GO:GO:0007507 GO:GO:0046872 GO:GO:0008144
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0001666
EMBL:CH471138 GO:GO:0045776 GO:GO:0006631 GO:GO:0015908
Pathway_Interaction_DB:rxr_vdr_pathway GO:GO:0042157 GO:GO:0010887
GO:GO:0010745 GO:GO:0032868 GO:GO:0032000 GO:GO:0000122
GO:GO:0010891 GO:GO:0008289 GO:GO:0042060 GO:GO:0008544
GO:GO:0070166 GO:GO:0006367 DrugBank:DB01076 DrugBank:DB00641
Reactome:REACT_24941 GO:GO:0032099 eggNOG:NOG266867
DrugBank:DB01241 DrugBank:DB00636 DrugBank:DB01393 GO:GO:0045820
GO:GO:0072363 GO:GO:0072369 PDB:1K7L PDB:2NPA PDB:2P54 PDB:3ET1
PDB:3FEI PDB:3G8I PDBsum:1K7L PDBsum:2NPA PDBsum:2P54 PDBsum:3ET1
PDBsum:3FEI PDBsum:3G8I PDB:1KKQ PDBsum:1KKQ GO:GO:0010871
EMBL:AL078611 CTD:5465 HOGENOM:HOG000261626 HOVERGEN:HBG106004
KO:K07294 OMA:ICPLSPL OrthoDB:EOG4FFD1Q GO:GO:0072366 EMBL:L02932
EMBL:S74349 EMBL:Y07619 EMBL:AB307690 EMBL:EU650667 EMBL:CR456547
EMBL:AK289821 EMBL:CR457435 EMBL:AY206718 EMBL:AL049856
IPI:IPI00020097 PIR:A49289 PIR:I56603 RefSeq:NP_001001928.1
RefSeq:NP_005027.2 UniGene:Hs.103110 UniGene:Hs.710044 PDB:1I7G
PDB:2REW PDB:2ZNN PDB:3KDT PDB:3KDU PDB:3SP6 PDB:3VI8 PDBsum:1I7G
PDBsum:2REW PDBsum:2ZNN PDBsum:3KDT PDBsum:3KDU PDBsum:3SP6
PDBsum:3VI8 ProteinModelPortal:Q07869 SMR:Q07869 DIP:DIP-241N
IntAct:Q07869 MINT:MINT-232229 STRING:Q07869 PhosphoSite:Q07869
DMDM:3041727 PRIDE:Q07869 DNASU:5465 Ensembl:ENST00000262735
Ensembl:ENST00000396000 Ensembl:ENST00000402126
Ensembl:ENST00000407236 GeneID:5465 KEGG:hsa:5465 UCSC:uc003bgw.1
GeneCards:GC22P046546 HGNC:HGNC:9232 MIM:170998 neXtProt:NX_Q07869
PharmGKB:PA280 InParanoid:Q07869 PhylomeDB:Q07869 BindingDB:Q07869
ChEMBL:CHEMBL239 DrugBank:DB01039 EvolutionaryTrace:Q07869
GenomeRNAi:5465 NextBio:21152 ArrayExpress:Q07869 Bgee:Q07869
CleanEx:HS_PPARA Genevestigator:Q07869 GermOnline:ENSG00000186951
Uniprot:Q07869
Length = 468
Score = 179 (68.1 bits), Expect = 7.8e-21, Sum P(2) = 7.8e-21
Identities = 31/67 (46%), Positives = 50/67 (74%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y +C D C + + NRN+CQYCRF KCL+VGMS +++R+GR+P+
Sbjct: 123 KGFFRRTIRLKLVYDKC--DRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSE 180
Query: 62 RERSDSE 68
+ + +E
Sbjct: 181 KAKLKAE 187
Score = 96 (38.9 bits), Expect = 7.8e-21, Sum P(2) = 7.8e-21
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR-LTTDSSLTFSDGMYVTRQ 233
+V + EFAK +PGF +L +DQ+ L+K G +E +S + D L ++TR+
Sbjct: 283 TVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITRE 342
Query: 234 QLE 236
L+
Sbjct: 343 FLK 345
>UNIPROTKB|Q5EA13 [details] [associations]
symbol:PPARA "Peroxisome proliferative activated receptor,
alpha isoform 1" species:9913 "Bos taurus" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0019217 "regulation of fatty acid metabolic process"
evidence=ISS] [GO:0008544 "epidermis development" evidence=ISS]
[GO:0006631 "fatty acid metabolic process" evidence=ISS]
[GO:0004872 "receptor activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0072369 "regulation of lipid transport
by positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0072366 "regulation of cellular ketone
metabolic process by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0072363 "regulation of
glycolysis by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0070166 "enamel
mineralization" evidence=IEA] [GO:0046321 "positive regulation of
fatty acid oxidation" evidence=IEA] [GO:0042060 "wound healing"
evidence=IEA] [GO:0032099 "negative regulation of appetite"
evidence=IEA] [GO:0031624 "ubiquitin conjugating enzyme binding"
evidence=IEA] [GO:0010891 "negative regulation of sequestering of
triglyceride" evidence=IEA] [GO:0010887 "negative regulation of
cholesterol storage" evidence=IEA] [GO:0010871 "negative regulation
of receptor biosynthetic process" evidence=IEA] [GO:0008289 "lipid
binding" evidence=IEA] [GO:0008144 "drug binding" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
[GO:0001103 "RNA polymerase II repressing transcription factor
binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003076
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01289
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 GO:GO:0046872 GO:GO:0008144 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0004872
GO:GO:0006631 GO:GO:0003700 GO:GO:0019217 GO:GO:0046321
GO:GO:0010887 GO:GO:0000122 GO:GO:0010891 GO:GO:0042060
GO:GO:0008544 GO:GO:0070166 GO:GO:0032099 eggNOG:NOG266867
GeneTree:ENSGT00700000104361 GO:GO:0072363 GO:GO:0072369
GO:GO:0010871 CTD:5465 HOGENOM:HOG000261626 HOVERGEN:HBG106004
KO:K07294 OMA:ICPLSPL OrthoDB:EOG4FFD1Q GO:GO:0072366
EMBL:DAAA02014949 EMBL:DAAA02014950 EMBL:DAAA02014951
EMBL:DAAA02014952 EMBL:BT020756 IPI:IPI00699935
RefSeq:NP_001029208.1 UniGene:Bt.18241 SMR:Q5EA13 STRING:Q5EA13
Ensembl:ENSBTAT00000010606 GeneID:281992 KEGG:bta:281992
InParanoid:Q5EA13 NextBio:20805860 Uniprot:Q5EA13
Length = 470
Score = 179 (68.1 bits), Expect = 7.9e-21, Sum P(2) = 7.9e-21
Identities = 31/67 (46%), Positives = 50/67 (74%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y +C D C + + NRN+CQYCRF KCL+VGMS +++R+GR+P+
Sbjct: 125 KGFFRRTIRLKLVYDKC--DRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSE 182
Query: 62 RERSDSE 68
+ + +E
Sbjct: 183 KAKLKAE 189
Score = 96 (38.9 bits), Expect = 7.9e-21, Sum P(2) = 7.9e-21
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR-LTTDSSLTFSDGMYVTRQ 233
+V + EFAK +PGF +L +DQ+ L+K G +E +S + D L ++TR+
Sbjct: 285 TVTELTEFAKSIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITRE 344
Query: 234 QLE 236
L+
Sbjct: 345 FLK 347
>UNIPROTKB|Q03181 [details] [associations]
symbol:PPARD "Peroxisome proliferator-activated receptor
delta" species:9606 "Homo sapiens" [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0014068 "positive regulation of
phosphatidylinositol 3-kinase cascade" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0031589 "cell-substrate
adhesion" evidence=IEA] [GO:0042060 "wound healing" evidence=IEA]
[GO:0042640 "anagen" evidence=IEA] [GO:0043616 "keratinocyte
proliferation" evidence=IEA] [GO:0050680 "negative regulation of
epithelial cell proliferation" evidence=IEA] [GO:0051546
"keratinocyte migration" evidence=IEA] [GO:0060612 "adipose tissue
development" evidence=IEA] [GO:0008289 "lipid binding"
evidence=IDA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IDA] [GO:0008144 "drug binding" evidence=IDA] [GO:0070539
"linoleic acid binding" evidence=IDA] [GO:0005504 "fatty acid
binding" evidence=NAS] [GO:0006635 "fatty acid beta-oxidation"
evidence=ISS;TAS] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=ISS;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA;NAS] [GO:0005634 "nucleus" evidence=NAS] [GO:0046697
"decidualization" evidence=TAS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006629 "lipid metabolic process" evidence=ISS]
[GO:0008366 "axon ensheathment" evidence=ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008203 "cholesterol metabolic process" evidence=TAS]
[GO:0009062 "fatty acid catabolic process" evidence=TAS]
[GO:0015908 "fatty acid transport" evidence=ISS] [GO:0006006
"glucose metabolic process" evidence=NAS] [GO:0015758 "glucose
transport" evidence=NAS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045600 "positive
regulation of fat cell differentiation" evidence=NAS] [GO:0007566
"embryo implantation" evidence=TAS] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006091 "generation of precursor metabolites and
energy" evidence=TAS] [GO:0006357 "regulation of transcription from
RNA polymerase II promoter" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0030522 "intracellular receptor mediated
signaling pathway" evidence=IDA] Reactome:REACT_71
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003074 InterPro:IPR003075 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01290 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0006915
GO:GO:0045893 GO:GO:0043616 GO:GO:0005654 GO:GO:0030154
EMBL:CH471081 Pathway_Interaction_DB:ps1pathway GO:GO:0046872
GO:GO:0003677 GO:GO:0008144 GO:GO:0008284 GO:GO:0008283
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0008203
GO:GO:0014068 GO:GO:0015758 GO:GO:0060612 GO:GO:0045600
GO:GO:0006006 GO:GO:0006091 GO:GO:0015908
Pathway_Interaction_DB:rxr_vdr_pathway GO:GO:0006635 GO:GO:0000122
DrugBank:DB00159 GO:GO:0042060 GO:GO:0042640 DrugBank:DB00605
GO:GO:0050680 GO:GO:0006367 GO:GO:0031589 GO:GO:0046697
GO:GO:0007566 DrugBank:DB00374 GO:GO:0008366 eggNOG:NOG266867
GO:GO:0070539 EMBL:AL022721 GO:GO:0051546 HOGENOM:HOG000261626
HOVERGEN:HBG106004 OrthoDB:EOG4FFD1Q CTD:5467 KO:K04504 OMA:SSLFLND
EMBL:L07592 EMBL:AF246303 EMBL:AF246299 EMBL:AF246300 EMBL:AF246301
EMBL:AF246302 EMBL:AB307691 EMBL:AY919140 EMBL:AK291661
EMBL:AK296425 EMBL:AK122614 EMBL:AY442342 EMBL:BC002715
EMBL:BC007578 EMBL:AB099507 IPI:IPI00009330 IPI:IPI00219761
PIR:A45360 RefSeq:NP_001165289.1 RefSeq:NP_001165290.1
RefSeq:NP_001165291.1 RefSeq:NP_006229.1 RefSeq:NP_803184.1
UniGene:Hs.696032 PDB:1GWX PDB:1Y0S PDB:2AWH PDB:2B50 PDB:2BAW
PDB:2ENV PDB:2GWX PDB:2J14 PDB:2Q5G PDB:2XYJ PDB:2XYW PDB:2XYX
PDB:2ZNP PDB:2ZNQ PDB:3D5F PDB:3DY6 PDB:3ET2 PDB:3GWX PDB:3GZ9
PDB:3OZ0 PDB:3PEQ PDB:3SP9 PDB:3TKM PDBsum:1GWX PDBsum:1Y0S
PDBsum:2AWH PDBsum:2B50 PDBsum:2BAW PDBsum:2ENV PDBsum:2GWX
PDBsum:2J14 PDBsum:2Q5G PDBsum:2XYJ PDBsum:2XYW PDBsum:2XYX
PDBsum:2ZNP PDBsum:2ZNQ PDBsum:3D5F PDBsum:3DY6 PDBsum:3ET2
PDBsum:3GWX PDBsum:3GZ9 PDBsum:3OZ0 PDBsum:3PEQ PDBsum:3SP9
PDBsum:3TKM ProteinModelPortal:Q03181 SMR:Q03181 IntAct:Q03181
MINT:MINT-1200178 STRING:Q03181 PhosphoSite:Q03181 DMDM:417522
PaxDb:Q03181 PRIDE:Q03181 DNASU:5467 Ensembl:ENST00000311565
Ensembl:ENST00000337400 Ensembl:ENST00000360694
Ensembl:ENST00000444397 Ensembl:ENST00000448077 GeneID:5467
KEGG:hsa:5467 UCSC:uc003okm.3 GeneCards:GC06P035310
H-InvDB:HIX0165038 HGNC:HGNC:9235 HPA:CAB017635 MIM:600409
neXtProt:NX_Q03181 PharmGKB:PA33557 InParanoid:Q03181
PhylomeDB:Q03181 BindingDB:Q03181 ChEMBL:CHEMBL3979 ChiTaRS:PPARD
EvolutionaryTrace:Q03181 GenomeRNAi:5467 NextBio:21160
ArrayExpress:Q03181 Bgee:Q03181 CleanEx:HS_PPARD
Genevestigator:Q03181 GermOnline:ENSG00000112033 Uniprot:Q03181
Length = 441
Score = 184 (69.8 bits), Expect = 9.1e-21, Sum P(2) = 9.1e-21
Identities = 31/63 (49%), Positives = 50/63 (79%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 152
Query: 62 RER 64
+ +
Sbjct: 153 KRK 155
Score = 89 (36.4 bits), Expect = 9.1e-21, Sum P(2) = 9.1e-21
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L ++G +VTR+
Sbjct: 256 TVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTRE 315
Query: 234 QL 235
L
Sbjct: 316 FL 317
>UNIPROTKB|C9J8W4 [details] [associations]
symbol:NR4A2 "Nuclear receptor subfamily 4 group A member
2" species:9606 "Homo sapiens" [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003070 InterPro:IPR003073 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01284 PRINTS:PR01287 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
HOGENOM:HOG000230925 EMBL:AC074099 HGNC:HGNC:7981 ChiTaRS:NR4A2
IPI:IPI00927888 ProteinModelPortal:C9J8W4 SMR:C9J8W4 STRING:C9J8W4
Ensembl:ENST00000429376 ArrayExpress:C9J8W4 Bgee:C9J8W4
Uniprot:C9J8W4
Length = 490
Score = 189 (71.6 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 45/102 (44%), Positives = 61/102 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCLAVGM ++ VR + R R
Sbjct: 221 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGR-R 279
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETA---GPVQSLPSSTELD 101
R S+ S + + PP SL +A V S P+ T LD
Sbjct: 280 GRLPSKPKSPQ-EPSPPSPPVSLISALVRAHVDSNPAMTSLD 320
Score = 85 (35.0 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
QQF +T S++ + +A+++PGF DL + DQ +L + F EL++
Sbjct: 341 QQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFV 385
>MGI|MGI:1352457 [details] [associations]
symbol:Nr4a3 "nuclear receptor subfamily 4, group A, member
3" species:10090 "Mus musculus" [GO:0001077 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IDA] [GO:0001707 "mesoderm formation"
evidence=IMP] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007411 "axon guidance" evidence=IMP] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0021766 "hippocampus development"
evidence=IMP] [GO:0030522 "intracellular receptor mediated
signaling pathway" evidence=IEA] [GO:0030534 "adult behavior"
evidence=IMP] [GO:0033554 "cellular response to stress"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=IDA] [GO:0045787 "positive regulation of cell
cycle" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048752
"semicircular canal morphogenesis" evidence=IMP] [GO:0050885
"neuromuscular process controlling balance" evidence=IMP]
[GO:0060005 "vestibular reflex" evidence=IMP] [GO:2000108 "positive
regulation of leukocyte apoptotic process" evidence=IMP]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003070 InterPro:IPR003072 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01284 PRINTS:PR01286 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 MGI:MGI:1352457
GO:GO:0007411 GO:GO:0021766 GO:GO:0033554 GO:GO:0046872
GO:GO:0031100 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0043434 GO:GO:0050885 GO:GO:0043524 GO:GO:0005667
GO:GO:0001077 GO:GO:0001707 GO:GO:0030534 GO:GO:0030522
GO:GO:0045787 GO:GO:0048752 eggNOG:NOG245120
GeneTree:ENSGT00640000091364 HOGENOM:HOG000230925
HOVERGEN:HBG052663 CTD:8013 KO:K08559 OrthoDB:EOG4894MB
GO:GO:2000108 GO:GO:0060005 EMBL:AF191211 EMBL:AF191212
IPI:IPI00137203 IPI:IPI00410918 RefSeq:NP_056558.1
UniGene:Mm.247261 UniGene:Mm.487935 ProteinModelPortal:Q9QZB6
SMR:Q9QZB6 STRING:Q9QZB6 PhosphoSite:Q9QZB6 PRIDE:Q9QZB6
DNASU:18124 Ensembl:ENSMUST00000030025 GeneID:18124 KEGG:mmu:18124
UCSC:uc008suv.1 InParanoid:Q9QZB6 NextBio:293340 Bgee:Q9QZB6
CleanEx:MM_NR4A3 Genevestigator:Q9QZB6
GermOnline:ENSMUSG00000028341 Uniprot:Q9QZB6
Length = 627
Score = 174 (66.3 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 46/126 (36%), Positives = 70/126 (55%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRY-------G 55
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCL+VGM ++ VR G
Sbjct: 314 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRG 373
Query: 56 RVPKRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSST--ELDTKQLLTYDVILA 113
R+P S+ +S + ++ S PP + A V++L +T +LD + D A
Sbjct: 374 RLP--SKPKSPLQQEPSQPSPPS--PPICMMNA-LVRALTDATPRDLDYSRYCPTDQATA 428
Query: 114 VSQAHH 119
+ A H
Sbjct: 429 GTDAEH 434
Score = 104 (41.7 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVS-RLTT-DSSLT 223
QQF +T S+ +A+++PGF DL ++DQ +LI+ F EL++ +S R T +
Sbjct: 436 QQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNTAEDKFV 495
Query: 224 FSDGMYVTRQQ 234
F +G+ + R Q
Sbjct: 496 FCNGLVLHRLQ 506
>RGD|61882 [details] [associations]
symbol:Nr4a3 "nuclear receptor subfamily 4, group A, member 3"
species:10116 "Rattus norvegicus" [GO:0001077 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA;ISO] [GO:0001707 "mesoderm formation"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005667
"transcription factor complex" evidence=IEA;ISO] [GO:0007411 "axon
guidance" evidence=IEA;ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0021766 "hippocampus development"
evidence=IEA;ISO] [GO:0030534 "adult behavior" evidence=IEA;ISO]
[GO:0031100 "organ regeneration" evidence=IEP] [GO:0033554 "cellular
response to stress" evidence=IEA;ISO] [GO:0042472 "inner ear
morphogenesis" evidence=ISO] [GO:0043066 "negative regulation of
apoptotic process" evidence=ISO] [GO:0043434 "response to peptide
hormone stimulus" evidence=IEP] [GO:0043524 "negative regulation of
neuron apoptotic process" evidence=IEA;ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IEA;ISO] [GO:0045787
"positive regulation of cell cycle" evidence=IEA;ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA;ISO] [GO:0050885 "neuromuscular process
controlling balance" evidence=IEA;ISO] [GO:0060005 "vestibular
reflex" evidence=IEA;ISO] [GO:2000108 "positive regulation of
leukocyte apoptotic process" evidence=IEA;ISO] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003070
InterPro:IPR003072 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01284 PRINTS:PR01286 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:61882 GO:GO:0007411 GO:GO:0021766
GO:GO:0033554 GO:GO:0046872 GO:GO:0003677 GO:GO:0031100
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0043434
GO:GO:0050885 GO:GO:0043524 GO:GO:0005667 GO:GO:0001077
GO:GO:0001707 GO:GO:0030534 GO:GO:0030522 GO:GO:0045787
GO:GO:0048752 eggNOG:NOG245120 GeneTree:ENSGT00640000091364
HOGENOM:HOG000230925 HOVERGEN:HBG052663 CTD:8013 KO:K08559
OMA:PSTSMYF OrthoDB:EOG4894MB GO:GO:2000108 GO:GO:0060005
EMBL:D38530 EMBL:X86003 EMBL:DQ268830 EMBL:L19343 IPI:IPI00199318
IPI:IPI00411258 PIR:JC2493 PIR:S66671 RefSeq:NP_113816.1
UniGene:Rn.62694 ProteinModelPortal:P51179 SMR:P51179 STRING:P51179
PhosphoSite:P51179 Ensembl:ENSRNOT00000008302 GeneID:58853
KEGG:rno:58853 UCSC:RGD:61882 InParanoid:P51179 NextBio:611439
ArrayExpress:P51179 Genevestigator:P51179
GermOnline:ENSRNOG00000005964 Uniprot:P51179
Length = 628
Score = 174 (66.3 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 46/126 (36%), Positives = 70/126 (55%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRY-------G 55
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCL+VGM ++ VR G
Sbjct: 315 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRG 374
Query: 56 RVPKRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSST--ELDTKQLLTYDVILA 113
R+P S+ +S + ++ S PP + A V++L +T +LD + D A
Sbjct: 375 RLP--SKPKSPLQQEPSQPSPPS--PPICMMNA-LVRALTDATPRDLDYSRYCPTDQATA 429
Query: 114 VSQAHH 119
+ A H
Sbjct: 430 GTDAEH 435
Score = 104 (41.7 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVS-RLTT-DSSLT 223
QQF +T S+ +A+++PGF DL ++DQ +LI+ F EL++ +S R T +
Sbjct: 437 QQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNTAEDKFV 496
Query: 224 FSDGMYVTRQQ 234
F +G+ + R Q
Sbjct: 497 FCNGLVLHRLQ 507
>UNIPROTKB|P51179 [details] [associations]
symbol:Nr4a3 "Nuclear receptor subfamily 4 group A member
3" species:10116 "Rattus norvegicus" [GO:0001077 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA] [GO:0001707 "mesoderm formation"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0007411 "axon guidance" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0021766 "hippocampus
development" evidence=IEA] [GO:0030534 "adult behavior"
evidence=IEA] [GO:0033554 "cellular response to stress"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045787 "positive regulation of cell cycle"
evidence=IEA] [GO:0048752 "semicircular canal morphogenesis"
evidence=IEA] [GO:0050885 "neuromuscular process controlling
balance" evidence=IEA] [GO:0060005 "vestibular reflex"
evidence=IEA] [GO:2000108 "positive regulation of leukocyte
apoptotic process" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003070
InterPro:IPR003072 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01284 PRINTS:PR01286 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:61882 GO:GO:0007411 GO:GO:0021766
GO:GO:0033554 GO:GO:0046872 GO:GO:0003677 GO:GO:0031100
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0043434
GO:GO:0050885 GO:GO:0043524 GO:GO:0005667 GO:GO:0001077
GO:GO:0001707 GO:GO:0030534 GO:GO:0030522 GO:GO:0045787
GO:GO:0048752 eggNOG:NOG245120 GeneTree:ENSGT00640000091364
HOGENOM:HOG000230925 HOVERGEN:HBG052663 CTD:8013 KO:K08559
OMA:PSTSMYF OrthoDB:EOG4894MB GO:GO:2000108 GO:GO:0060005
EMBL:D38530 EMBL:X86003 EMBL:DQ268830 EMBL:L19343 IPI:IPI00199318
IPI:IPI00411258 PIR:JC2493 PIR:S66671 RefSeq:NP_113816.1
UniGene:Rn.62694 ProteinModelPortal:P51179 SMR:P51179 STRING:P51179
PhosphoSite:P51179 Ensembl:ENSRNOT00000008302 GeneID:58853
KEGG:rno:58853 UCSC:RGD:61882 InParanoid:P51179 NextBio:611439
ArrayExpress:P51179 Genevestigator:P51179
GermOnline:ENSRNOG00000005964 Uniprot:P51179
Length = 628
Score = 174 (66.3 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 46/126 (36%), Positives = 70/126 (55%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRY-------G 55
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCL+VGM ++ VR G
Sbjct: 315 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRG 374
Query: 56 RVPKRSRERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSST--ELDTKQLLTYDVILA 113
R+P S+ +S + ++ S PP + A V++L +T +LD + D A
Sbjct: 375 RLP--SKPKSPLQQEPSQPSPPS--PPICMMNA-LVRALTDATPRDLDYSRYCPTDQATA 429
Query: 114 VSQAHH 119
+ A H
Sbjct: 430 GTDAEH 435
Score = 104 (41.7 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVS-RLTT-DSSLT 223
QQF +T S+ +A+++PGF DL ++DQ +LI+ F EL++ +S R T +
Sbjct: 437 QQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNTAEDKFV 496
Query: 224 FSDGMYVTRQQ 234
F +G+ + R Q
Sbjct: 497 FCNGLVLHRLQ 507
>ZFIN|ZDB-GENE-070824-4 [details] [associations]
symbol:nr4a3 "nuclear receptor subfamily 4, group A,
member 3" species:7955 "Danio rerio" [GO:0043401 "steroid hormone
mediated signaling pathway" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003070
InterPro:IPR003073 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01284 PRINTS:PR01287 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-070824-4 GO:GO:0005634
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0030522 eggNOG:NOG245120 HOGENOM:HOG000230925
HOVERGEN:HBG052663 OrthoDB:EOG4894MB EMBL:DQ017611 IPI:IPI00510220
UniGene:Dr.76117 ProteinModelPortal:Q1L695 SMR:Q1L695
InParanoid:Q1L695 Uniprot:Q1L695
Length = 594
Score = 180 (68.4 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 45/106 (42%), Positives = 62/106 (58%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R++QK +Y CL C V + RNRCQYCRF+KCL+VGM ++ VR + R R
Sbjct: 276 KGFFKRTVQKNAKYVCLASKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDNLKGR-R 334
Query: 63 ERSDSETGST-RVSTTGAEPPSSLETAGPVQSLPSST--ELDTKQL 105
R S+ S + + PP SL A V++ ST ELD Q+
Sbjct: 335 GRLPSKPKSPLQPEPSPPSPPLSLLNA-LVRAYSQSTPRELDYSQV 379
Score = 97 (39.2 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 158 ESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR-- 215
ESQ++ Q F +T S++ +A+R+PGF +L DDQ +LI F EL++ ++
Sbjct: 390 ESQQI---QMFYRVLTGSMEVTRCWAERLPGFSELHHDDQNMLIDSAFLELFVLRLANRS 446
Query: 216 LTTDSSLTFSDGMYVTRQQ 234
L D F G+ + R Q
Sbjct: 447 LLVDEKFVFCTGLVLHRLQ 465
>UNIPROTKB|Q3LZI9 [details] [associations]
symbol:Nr4a2 "Nuclear receptor subfamily 4 group A member 2
variant NURR1c" species:10116 "Rattus norvegicus" [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003070 InterPro:IPR003073
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01284 PRINTS:PR01287
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 RGD:3202
GO:GO:0005634 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0030522 HOGENOM:HOG000230925
HOVERGEN:HBG052663 UniGene:Rn.88129 EMBL:DQ092629 IPI:IPI00778010
SMR:Q3LZI9 STRING:Q3LZI9 Ensembl:ENSRNOT00000007799
Genevestigator:Q3LZI9 Uniprot:Q3LZI9
Length = 500
Score = 189 (71.6 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 45/102 (44%), Positives = 61/102 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCLAVGM ++ VR + R R
Sbjct: 284 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGR-R 342
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETA---GPVQSLPSSTELD 101
R S+ S + + PP SL +A V S P+ T LD
Sbjct: 343 GRLPSKPKSPQ-DPSPPSPPVSLISALVRAHVDSNPAMTSLD 383
Score = 85 (35.0 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
QQF +T S++ + +A+++PGF DL + DQ +L + F EL++
Sbjct: 404 QQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFV 448
>UNIPROTKB|E2RRN7 [details] [associations]
symbol:NR4A2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003070
InterPro:IPR003073 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01284 PRINTS:PR01287 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 GO:GO:0005634 GO:GO:0046872 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
GeneTree:ENSGT00640000091364 EMBL:AAEX03017669
Ensembl:ENSCAFT00000037480 Uniprot:E2RRN7
Length = 507
Score = 189 (71.6 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 45/102 (44%), Positives = 61/102 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCLAVGM ++ VR + R R
Sbjct: 284 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGR-R 342
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETA---GPVQSLPSSTELD 101
R S+ S + + PP SL +A V S P+ T LD
Sbjct: 343 GRLPSKPKSPQ-EPSPPSPPVSLISALVRAHVDSNPAMTSLD 383
Score = 85 (35.0 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
QQF +T S++ + +A+++PGF DL + DQ +L + F EL++
Sbjct: 404 QQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFV 448
>UNIPROTKB|F1LQ07 [details] [associations]
symbol:Thrb "Thyroid hormone receptor beta" species:10116
"Rattus norvegicus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:3858 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887
GeneTree:ENSGT00680000099662 IPI:IPI01016303
Ensembl:ENSRNOT00000008989 ArrayExpress:F1LQ07 Uniprot:F1LQ07
Length = 456
Score = 159 (61.0 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV 52
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V
Sbjct: 123 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLV 174
Score = 126 (49.4 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 30/74 (40%), Positives = 46/74 (62%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ F +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R DS +L
Sbjct: 264 FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETL 323
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 324 TLNGEMAVTRGQLK 337
>MGI|MGI:98743 [details] [associations]
symbol:Thrb "thyroid hormone receptor beta" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IGI] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=TAS] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004887 "thyroid
hormone receptor activity" evidence=ISO;TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IGI] [GO:0007605 "sensory
perception of sound" evidence=IMP] [GO:0007621 "negative regulation
of female receptivity" evidence=IMP] [GO:0008016 "regulation of
heart contraction" evidence=IMP] [GO:0008050 "female courtship
behavior" evidence=IMP] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=ISO] [GO:0009887 "organ morphogenesis"
evidence=IMP] [GO:0019216 "regulation of lipid metabolic process"
evidence=ISO] [GO:0019899 "enzyme binding" evidence=ISO]
[GO:0030522 "intracellular receptor mediated signaling pathway"
evidence=ISO;TAS] [GO:0031490 "chromatin DNA binding" evidence=IDA]
[GO:0032332 "positive regulation of chondrocyte differentiation"
evidence=ISO] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045778 "positive regulation of ossification"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0090181
"regulation of cholesterol metabolic process" evidence=ISO]
[GO:0090207 "regulation of triglyceride metabolic process"
evidence=ISO] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 MGI:MGI:98743 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0008016 GO:GO:0000122 GO:GO:0009887 GO:GO:0007605
GO:GO:0031490 GO:GO:0004887 HOVERGEN:HBG005606 GO:GO:0007621
GO:GO:0008050 GeneTree:ENSGT00680000099662 eggNOG:NOG272726
HOGENOM:HOG000010313 CTD:7068 KO:K08362 OrthoDB:EOG4Z8XWB
OMA:HLIQATW EMBL:S62756 EMBL:S62758 EMBL:U15548 EMBL:U15542
EMBL:U15543 EMBL:U15544 EMBL:U15545 EMBL:U15546 EMBL:U15547
EMBL:AK158826 EMBL:BC089035 EMBL:BC119552 EMBL:BC119553
IPI:IPI00125236 IPI:IPI00125243 PIR:A40377 PIR:A57035
RefSeq:NP_001106888.1 RefSeq:NP_033406.1 UniGene:Mm.32563
UniGene:Mm.489809 ProteinModelPortal:P37242 SMR:P37242
MINT:MINT-3374177 STRING:P37242 PhosphoSite:P37242 PRIDE:P37242
Ensembl:ENSMUST00000022303 Ensembl:ENSMUST00000022304
Ensembl:ENSMUST00000091471 GeneID:21834 KEGG:mmu:21834
UCSC:uc007shk.2 UCSC:uc007sho.2 NextBio:301286 Bgee:P37242
CleanEx:MM_THRB Genevestigator:P37242 GermOnline:ENSMUSG00000021779
Uniprot:P37242
Length = 461
Score = 159 (61.0 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV 52
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V
Sbjct: 128 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLV 179
Score = 126 (49.4 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 30/74 (40%), Positives = 46/74 (62%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ F +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R DS +L
Sbjct: 269 FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETL 328
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 329 TLNGEMAVTRGQLK 342
>RGD|3858 [details] [associations]
symbol:Thrb "thyroid hormone receptor beta" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=TAS] [GO:0004887 "thyroid
hormone receptor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=ISO;TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0007605 "sensory perception
of sound" evidence=ISO] [GO:0007621 "negative regulation of female
receptivity" evidence=ISO] [GO:0008016 "regulation of heart
contraction" evidence=ISO] [GO:0008050 "female courtship behavior"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation" evidence=IMP]
[GO:0009887 "organ morphogenesis" evidence=ISO] [GO:0019216
"regulation of lipid metabolic process" evidence=IDA] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0030522 "intracellular receptor
mediated signaling pathway" evidence=TAS] [GO:0031490 "chromatin DNA
binding" evidence=ISO] [GO:0032332 "positive regulation of
chondrocyte differentiation" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0045778 "positive
regulation of ossification" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0048568 "embryonic organ development"
evidence=IEP] [GO:0090181 "regulation of cholesterol metabolic
process" evidence=IMP] [GO:0090207 "regulation of triglyceride
metabolic process" evidence=IMP] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR001728
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 RGD:3858 GO:GO:0005634
GO:GO:0042803 GO:GO:0046872 GO:GO:0008284 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0090181 GO:GO:0003690 GO:GO:0032332 GO:GO:0045778 GO:GO:0048568
GO:GO:0004887 GO:GO:0090207 HOVERGEN:HBG005606 eggNOG:NOG272726
HOGENOM:HOG000010313 EMBL:J03933 EMBL:J03819 EMBL:M25071
IPI:IPI00210609 IPI:IPI00324058 PIR:A31820 PIR:A41355
UniGene:Rn.88692 PDB:3M9E PDBsum:3M9E ProteinModelPortal:P18113
SMR:P18113 STRING:P18113 PhosphoSite:P18113 UCSC:RGD:3858
InParanoid:P37826 BindingDB:P18113 ChEMBL:CHEMBL3917
EvolutionaryTrace:P18113 ArrayExpress:P18113 Genevestigator:P18113
GermOnline:ENSRNOG00000006649 Uniprot:P18113
Length = 461
Score = 159 (61.0 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV 52
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V
Sbjct: 128 KGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLV 179
Score = 126 (49.4 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 30/74 (40%), Positives = 46/74 (62%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ F +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R DS +L
Sbjct: 269 FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETL 328
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 329 TLNGEMAVTRGQLK 342
>UNIPROTKB|Q6NSM0 [details] [associations]
symbol:NR1D2 "Nuclear receptor subfamily 1 group D member
2" species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR001628 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00105 PRINTS:PR00047 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
GO:GO:0003700 GO:GO:0006351 HOVERGEN:HBG106790 EMBL:AC124914
UniGene:Hs.37288 HGNC:HGNC:7963 EMBL:BC070035 IPI:IPI00431747
HSSP:P20393 SMR:Q6NSM0 STRING:Q6NSM0 Ensembl:ENST00000383773
HOGENOM:HOG000203957 Uniprot:Q6NSM0
Length = 408
Score = 246 (91.7 bits), Expect = 1.4e-20, P = 1.4e-20
Identities = 52/119 (43%), Positives = 77/119 (64%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR+PKR
Sbjct: 124 KGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKRE 183
Query: 62 RERSDSETGSTRVSTTGAEPPSSLETAGPVQ-----SLPSSTELDTKQLLTYDVILAVS 115
++R E S + ++ L+ V+ +LP+ +L K L + I + S
Sbjct: 184 KQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQLEQENIKSSS 242
>UNIPROTKB|F8W6I3 [details] [associations]
symbol:NR4A2 "Nuclear receptor subfamily 4 group A member
2" species:9606 "Homo sapiens" [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003070 InterPro:IPR003073 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01284 PRINTS:PR01287 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
EMBL:AC074099 HGNC:HGNC:7981 ChiTaRS:NR4A2 IPI:IPI00917128
ProteinModelPortal:F8W6I3 SMR:F8W6I3 Ensembl:ENST00000409108
ArrayExpress:F8W6I3 Bgee:F8W6I3 Uniprot:F8W6I3
Length = 553
Score = 189 (71.6 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 45/102 (44%), Positives = 61/102 (59%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCLAVGM ++ VR + R R
Sbjct: 284 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGR-R 342
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETA---GPVQSLPSSTELD 101
R S+ S + + PP SL +A V S P+ T LD
Sbjct: 343 GRLPSKPKSPQ-EPSPPSPPVSLISALVRAHVDSNPAMTSLD 383
Score = 85 (35.0 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
QQF +T S++ + +A+++PGF DL + DQ +L + F EL++
Sbjct: 404 QQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFV 448
>FB|FBgn0014859 [details] [associations]
symbol:Hr38 "Hormone receptor-like in 38" species:7227
"Drosophila melanogaster" [GO:0000977 "RNA polymerase II regulatory
region sequence-specific DNA binding" evidence=IDA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=ISS;NAS] [GO:0005634
"nucleus" evidence=IEA;NAS] [GO:0008544 "epidermis development"
evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0048384 "retinoic acid receptor signaling
pathway" evidence=IEA] [GO:0003708 "retinoic acid receptor
activity" evidence=IEA] [GO:0006911 "phagocytosis, engulfment"
evidence=IMP] [GO:0042335 "cuticle development" evidence=IMP]
[GO:0048082 "regulation of adult chitin-containing cuticle
pigmentation" evidence=IGI] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 GO:GO:0006911 EMBL:AE014134 GO:GO:0046872
GO:GO:0004879 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0042335 GO:GO:0000977
GO:GO:0048082 EMBL:X89246 EMBL:Y15606 EMBL:AJ002073 EMBL:U36762
RefSeq:NP_477119.1 UniGene:Dm.2701 PDB:1PDU PDBsum:1PDU
ProteinModelPortal:P49869 SMR:P49869 DIP:DIP-929N STRING:P49869
GeneID:35332 KEGG:dme:Dmel_CG1864 CTD:35332 FlyBase:FBgn0014859
eggNOG:NOG245120 HOGENOM:HOG000046504 InParanoid:P49869 KO:K08558
OrthoDB:EOG4SXKV7 EvolutionaryTrace:P49869 GenomeRNAi:35332
NextBio:793002 Bgee:P49869 GermOnline:CG1864 Uniprot:P49869
Length = 1073
Score = 178 (67.7 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 44/102 (43%), Positives = 59/102 (57%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R++QK +Y CL D C V + RNRCQ+CRF+KCL VGM ++ VR + R R
Sbjct: 765 KGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQFCRFQKCLVVGMVKEVVRTDSLKGR-R 823
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETA---GPVQSLPSSTELD 101
R S+ S + S PP SL TA V + P + LD
Sbjct: 824 GRLPSKPKSPQESPPS--PPISLITALVRSHVDTTPDPSCLD 863
Score = 104 (41.7 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF +T SV + +FA+++PG+ DL +DQ +L + EL++ Y +R+ D+ L
Sbjct: 879 QQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRARID-DTKL 937
Query: 223 TFSDGMYVTRQQ 234
F +G + R Q
Sbjct: 938 IFCNGTVLHRTQ 949
>UNIPROTKB|Q8HYL6 [details] [associations]
symbol:PPARA "Peroxisome proliferator-activated receptor
alpha" species:38626 "Phascolarctos cinereus" [GO:0008144 "drug
binding" evidence=ISS] [GO:0008289 "lipid binding" evidence=ISS]
[GO:0032099 "negative regulation of appetite" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003076
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01289
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 GO:GO:0045893 GO:GO:0046872 GO:GO:0008144
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0008289
GO:GO:0030522 GO:GO:0032099 HOVERGEN:HBG106004 EMBL:AF463455
ProteinModelPortal:Q8HYL6 SMR:Q8HYL6 Uniprot:Q8HYL6
Length = 468
Score = 175 (66.7 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 30/67 (44%), Positives = 50/67 (74%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y +C D C + + NRN+CQYCRF+KCL+ GMS +++R+GR+P+
Sbjct: 123 KGFFRRTIRLKLAYDKC--DRSCKIQKKNRNKCQYCRFQKCLSDGMSHNAIRFGRMPRSE 180
Query: 62 RERSDSE 68
+ + +E
Sbjct: 181 KAKLKAE 187
Score = 96 (38.9 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR-LTTDSSLTFSDGMYVTRQ 233
+V + EFAK +PGF +L+ +DQ+ L+K G +E +S + D L ++TR+
Sbjct: 283 TVTELTEFAKSIPGFSNLNLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITRE 342
Query: 234 QLE 236
L+
Sbjct: 343 FLK 345
>UNIPROTKB|F1SM76 [details] [associations]
symbol:PPARA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003074
InterPro:IPR003076 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PRINTS:PR01289 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0008144 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0046321 GO:GO:0010887 GO:GO:0000122 GO:GO:0010891
GO:GO:0042060 GO:GO:0008544 GO:GO:0070166 GO:GO:0032099
GeneTree:ENSGT00700000104361 GO:GO:0072363 GO:GO:0072369
GO:GO:0010871 OMA:ICPLSPL GO:GO:0072366 EMBL:FP016092
Ensembl:ENSSSCT00000000007 Uniprot:F1SM76
Length = 468
Score = 175 (66.7 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 30/67 (44%), Positives = 49/67 (73%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++ Y +C D C + + NRN+CQYCRF KCL+ GMS +++R+GR+P+
Sbjct: 123 KGFFRRTIRLKLVYDKC--DRSCKIQKKNRNKCQYCRFHKCLSAGMSHNAIRFGRMPRSE 180
Query: 62 RERSDSE 68
+ + +E
Sbjct: 181 KAKLKAE 187
Score = 95 (38.5 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR-LTTDSSLTFSDGMYVTRQ 233
+V + EFAK +PGF L +DQ+ L+K G +E +S + D L ++TR+
Sbjct: 283 TVTELTEFAKSIPGFASLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITRE 342
Query: 234 QLE 236
L+
Sbjct: 343 FLK 345
>MGI|MGI:101884 [details] [associations]
symbol:Ppard "peroxisome proliferator activator receptor
delta" species:10090 "Mus musculus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0001890 "placenta development" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=ISO] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=ISO;TAS] [GO:0005504 "fatty acid binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006029 "proteoglycan
metabolic process" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006629 "lipid
metabolic process" evidence=ISO;IMP] [GO:0006776 "vitamin A
metabolic process" evidence=ISO] [GO:0006915 "apoptotic process"
evidence=ISO] [GO:0007566 "embryo implantation" evidence=TAS]
[GO:0008047 "enzyme activator activity" evidence=TAS] [GO:0008144
"drug binding" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IMP] [GO:0008289 "lipid binding" evidence=ISO] [GO:0008366
"axon ensheathment" evidence=IMP] [GO:0008544 "epidermis
development" evidence=TAS] [GO:0008654 "phospholipid biosynthetic
process" evidence=ISO] [GO:0009299 "mRNA transcription"
evidence=ISO] [GO:0009987 "cellular process" evidence=TAS]
[GO:0014068 "positive regulation of phosphatidylinositol 3-kinase
cascade" evidence=IDA] [GO:0014912 "negative regulation of smooth
muscle cell migration" evidence=ISO] [GO:0016501 "prostacyclin
receptor activity" evidence=TAS] [GO:0019395 "fatty acid oxidation"
evidence=ISO] [GO:0030154 "cell differentiation" evidence=IMP;IDA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030522 "intracellular receptor mediated signaling pathway"
evidence=ISO;TAS] [GO:0031589 "cell-substrate adhesion"
evidence=IMP] [GO:0032024 "positive regulation of insulin
secretion" evidence=ISO] [GO:0032966 "negative regulation of
collagen biosynthetic process" evidence=ISO] [GO:0042060 "wound
healing" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IGI] [GO:0042640 "anagen" evidence=IMP]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISO] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0043616 "keratinocyte proliferation"
evidence=IMP] [GO:0045598 "regulation of fat cell differentiation"
evidence=IMP] [GO:0045684 "positive regulation of epidermis
development" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045909 "positive
regulation of vasodilation" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0046965 "retinoid X receptor binding"
evidence=TAS] [GO:0046982 "protein heterodimerization activity"
evidence=TAS] [GO:0048662 "negative regulation of smooth muscle
cell proliferation" evidence=ISO] [GO:0050680 "negative regulation
of epithelial cell proliferation" evidence=IGI] [GO:0050728
"negative regulation of inflammatory response" evidence=ISO]
[GO:0050796 "regulation of insulin secretion" evidence=NAS]
[GO:0051059 "NF-kappaB binding" evidence=ISO] [GO:0051546
"keratinocyte migration" evidence=IMP] [GO:0060612 "adipose tissue
development" evidence=IMP] [GO:0070539 "linoleic acid binding"
evidence=ISO] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003075
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01290
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
MGI:MGI:101884 GO:GO:0005634 GO:GO:0006915 GO:GO:0045893
GO:GO:0043616 GO:GO:0030154 GO:GO:0046872 GO:GO:0003677
GO:GO:0008144 GO:GO:0008284 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0014068 GO:GO:0060612 GO:GO:0015908
GO:GO:0050796 GO:GO:0006635 GO:GO:0000122 GO:GO:0046982
GO:GO:0001890 GO:GO:0042060 GO:GO:0042640 GO:GO:0008047
GO:GO:0045598 GO:GO:0050680 GO:GO:0031589 GO:GO:0007566
GO:GO:0046965 GO:GO:0008366 eggNOG:NOG266867 GO:GO:0070539
GO:GO:0051546 HOGENOM:HOG000261626 HOVERGEN:HBG106004
OrthoDB:EOG4FFD1Q CTD:5467 KO:K04504 OMA:SSLFLND EMBL:L28116
EMBL:U10375 EMBL:BC070398 EMBL:U01665 IPI:IPI00271799 PIR:I55442
RefSeq:NP_035275.1 UniGene:Mm.328914 ProteinModelPortal:P35396
SMR:P35396 DIP:DIP-29851N IntAct:P35396 STRING:P35396
PhosphoSite:P35396 PRIDE:P35396 Ensembl:ENSMUST00000002320
GeneID:19015 KEGG:mmu:19015 InParanoid:P35396 BindingDB:P35396
ChEMBL:CHEMBL2458 NextBio:295440 Bgee:P35396 CleanEx:MM_PPARD
Genevestigator:P35396 GermOnline:ENSMUSG00000002250 GO:GO:0016501
Uniprot:P35396
Length = 440
Score = 183 (69.5 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 31/63 (49%), Positives = 50/63 (79%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C D C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 94 KGFFRRTIRMKLEYEKC--DRICKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 151
Query: 62 RER 64
+ +
Sbjct: 152 KRK 154
Score = 85 (35.0 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L ++G +VT +
Sbjct: 255 TVRELTEFAKNIPNFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTHE 314
Query: 234 QL 235
L
Sbjct: 315 FL 316
>UNIPROTKB|Q0ZAQ8 [details] [associations]
symbol:PPARD "Peroxisome proliferator-activated receptor
delta" species:9615 "Canis lupus familiaris" [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=ISS] [GO:0008289 "lipid
binding" evidence=ISS] [GO:0070539 "linoleic acid binding"
evidence=ISS] [GO:0008144 "drug binding" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0060612 "adipose tissue
development" evidence=IEA] [GO:0051546 "keratinocyte migration"
evidence=IEA] [GO:0050680 "negative regulation of epithelial cell
proliferation" evidence=IEA] [GO:0045598 "regulation of fat cell
differentiation" evidence=IEA] [GO:0043616 "keratinocyte
proliferation" evidence=IEA] [GO:0042640 "anagen" evidence=IEA]
[GO:0042060 "wound healing" evidence=IEA] [GO:0031589
"cell-substrate adhesion" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0015908 "fatty acid transport"
evidence=IEA] [GO:0014068 "positive regulation of
phosphatidylinositol 3-kinase cascade" evidence=IEA] [GO:0008366
"axon ensheathment" evidence=IEA] [GO:0008284 "positive regulation
of cell proliferation" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0006635 "fatty acid beta-oxidation"
evidence=IEA] [GO:0001890 "placenta development" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003075
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01290
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 GO:GO:0006915 GO:GO:0045893 GO:GO:0043616
GO:GO:0030154 GO:GO:0046872 GO:GO:0008144 GO:GO:0008284
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0014068
GO:GO:0060612 GO:GO:0015908 GO:GO:0006635 GO:GO:0000122
GO:GO:0001890 GO:GO:0042060 GO:GO:0042640 GO:GO:0045598
GO:GO:0050680 GO:GO:0031589 GO:GO:0008366 eggNOG:NOG266867
GeneTree:ENSGT00700000104361 GO:GO:0070539 GO:GO:0051546
HOGENOM:HOG000261626 HOVERGEN:HBG106004 OrthoDB:EOG4FFD1Q
EMBL:DQ648277 RefSeq:NP_001041567.1 UniGene:Cfa.26703
ProteinModelPortal:Q0ZAQ8 SMR:Q0ZAQ8 STRING:Q0ZAQ8
Ensembl:ENSCAFT00000002032 GeneID:481756 KEGG:cfa:481756 CTD:5467
InParanoid:Q0ZAQ8 KO:K04504 OMA:SSLFLND BindingDB:Q0ZAQ8
ChEMBL:CHEMBL1932904 NextBio:20856496 Uniprot:Q0ZAQ8
Length = 441
Score = 178 (67.7 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 30/63 (47%), Positives = 50/63 (79%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KC+A+GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRMKLEYEKCERI--CKIQKKNRNKCQYCRFQKCVALGMSHNAIRFGRMPEAE 152
Query: 62 RER 64
+ +
Sbjct: 153 KRK 155
Score = 90 (36.7 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+V+ + EFAK +P F +L +DQ+ L+K G E ++ + L ++G +VTR+
Sbjct: 256 TVRELTEFAKSIPSFSNLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGTGFVTRE 315
Query: 234 QL 235
L
Sbjct: 316 FL 317
>UNIPROTKB|K9J6P0 [details] [associations]
symbol:K9J6P0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003070
InterPro:IPR003071 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01284 PRINTS:PR01285 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GeneTree:ENSGT00640000091364 EMBL:AAEX03015017
Ensembl:ENSCAFT00000011743 Uniprot:K9J6P0
Length = 562
Score = 174 (66.3 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 37/93 (39%), Positives = 54/93 (58%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRY-------G 55
+GFF+R++QK +Y CL + C V + RNRCQ+CRF+KCLAVGM ++ VR G
Sbjct: 252 KGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 311
Query: 56 RVPKRSRERSDSETGSTRVSTTGAEPPSSLETA 88
R+P + ++ D+ + S A S TA
Sbjct: 312 RLPSKPKQPPDASPANLLTSLVRAHLDSGPSTA 344
Score = 98 (39.6 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF ++ S++ + ++A+++PGF +LS DQ +L++ F EL+I Y S+ + L
Sbjct: 368 QQFYDLLSGSLEVIRKWAEKIPGFAELSPGDQDLLLESAFLELFILRLAYRSK-PAEGKL 426
Query: 223 TFSDGMYVTRQQ 234
F G+ + R Q
Sbjct: 427 IFCSGLVLHRLQ 438
>ZFIN|ZDB-GENE-040718-103 [details] [associations]
symbol:nr4a2b "nuclear receptor subfamily 4, group
A, member 2b" species:7955 "Danio rerio" [GO:0043401 "steroid
hormone mediated signaling pathway" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0021953 "central nervous system neuron differentiation"
evidence=IMP] [GO:0021884 "forebrain neuron development"
evidence=IMP] [GO:0071542 "dopaminergic neuron differentiation"
evidence=IGI] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003070 InterPro:IPR003073 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01284 PRINTS:PR01287 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430
ZFIN:ZDB-GENE-040718-103 GO:GO:0005634 GO:GO:0046872 GO:GO:0071542
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
GO:GO:0021884 eggNOG:NOG245120 KO:K08558 HOGENOM:HOG000230925
HOVERGEN:HBG052663 EMBL:BC076176 IPI:IPI00833876
RefSeq:NP_001002406.1 UniGene:Dr.12803 ProteinModelPortal:Q6DH08
SMR:Q6DH08 STRING:Q6DH08 GeneID:436679 KEGG:dre:436679 CTD:436679
InParanoid:Q6DH08 NextBio:20831122 ArrayExpress:Q6DH08
Uniprot:Q6DH08
Length = 586
Score = 176 (67.0 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 44/108 (40%), Positives = 61/108 (56%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R++QK +Y CL + C V + RNRCQYCRF+KCL VGM ++ VR + R R
Sbjct: 279 KGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLVVGMVKEVVRTASLKGR-R 337
Query: 63 ERSDSETGSTR---VSTTGAEPPSSLETAGPVQSLPSSTELDTKQLLT 107
R S+ S + VS T ++L A + S PS LD + T
Sbjct: 338 GRLPSKPKSPQDIPVSFTPVNLLNALVRAH-IDSNPSMARLDYSKFQT 384
Score = 96 (38.9 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF +T S+ + +A+++PGF +L + DQ +L + F EL++ Y S L D L
Sbjct: 399 QQFYDLLTASMSIIRGWAEKIPGFTELPKCDQELLFESAFLELFVLRLAYRSNLPEDK-L 457
Query: 223 TFSDGMYVTRQQ 234
F +GM + + Q
Sbjct: 458 IFCNGMVLHKLQ 469
>UNIPROTKB|A9XAM2 [details] [associations]
symbol:PPARD "Peroxisome proliferator-activated receptor
delta" species:9823 "Sus scrofa" [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0070539 "linoleic acid
binding" evidence=IEA] [GO:0060612 "adipose tissue development"
evidence=IEA] [GO:0051546 "keratinocyte migration" evidence=IEA]
[GO:0050680 "negative regulation of epithelial cell proliferation"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045598 "regulation of fat cell
differentiation" evidence=IEA] [GO:0043616 "keratinocyte
proliferation" evidence=IEA] [GO:0042640 "anagen" evidence=IEA]
[GO:0042060 "wound healing" evidence=IEA] [GO:0031589
"cell-substrate adhesion" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0015908 "fatty acid transport"
evidence=IEA] [GO:0014068 "positive regulation of
phosphatidylinositol 3-kinase cascade" evidence=IEA] [GO:0008366
"axon ensheathment" evidence=IEA] [GO:0008284 "positive regulation
of cell proliferation" evidence=IEA] [GO:0008144 "drug binding"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0006635 "fatty acid beta-oxidation" evidence=IEA] [GO:0001890
"placenta development" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003075
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01290
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 GO:GO:0006915 GO:GO:0045893 GO:GO:0043616
GO:GO:0030154 GO:GO:0046872 GO:GO:0008144 GO:GO:0008284
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0014068
GO:GO:0060612 GO:GO:0015908 GO:GO:0006635 GO:GO:0000122
GO:GO:0001890 GO:GO:0042060 GO:GO:0042640 GO:GO:0045598
GO:GO:0050680 GO:GO:0031589 GO:GO:0008366 eggNOG:NOG266867
GeneTree:ENSGT00700000104361 GO:GO:0070539 GO:GO:0051546
HOGENOM:HOG000261626 HOVERGEN:HBG106004 CTD:5467 KO:K04504
OMA:SSLFLND EMBL:CU467978 EMBL:EF079119 EMBL:EU169095 EMBL:GU565977
EMBL:GU565976 RefSeq:NP_001123713.1 RefSeq:NP_999317.2
UniGene:Ssc.15972 SMR:A9XAM2 STRING:A9XAM2
Ensembl:ENSSSCT00000001714 GeneID:397297 KEGG:ssc:397297
Uniprot:A9XAM2
Length = 441
Score = 181 (68.8 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 31/63 (49%), Positives = 50/63 (79%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 95 KGFFRRTIRMKLEYEKCERI--CKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 152
Query: 62 RER 64
+ +
Sbjct: 153 KRK 155
Score = 86 (35.3 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L ++G +VTR+
Sbjct: 256 TVRELTEFAKSIPSFDHLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGTGFVTRE 315
Query: 234 QL 235
L
Sbjct: 316 FL 317
>UNIPROTKB|P51666 [details] [associations]
symbol:NR4A1 "Nuclear receptor subfamily 4 group A member
1" species:9615 "Canis lupus familiaris" [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0044344 "cellular
response to fibroblast growth factor stimulus" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0043154 "negative regulation of cysteine-type endopeptidase
activity involved in apoptotic process" evidence=IEA] [GO:0042803
"protein homodimerization activity" evidence=IEA] [GO:0035924
"cellular response to vascular endothelial growth factor stimulus"
evidence=IEA] [GO:0035767 "endothelial cell chemotaxis"
evidence=IEA] [GO:0006917 "induction of apoptosis" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0002042 "cell migration involved in sprouting angiogenesis"
evidence=IEA] [GO:0001938 "positive regulation of endothelial cell
proliferation" evidence=IEA] [GO:0001077 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003070 InterPro:IPR003071
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01284 PRINTS:PR01285
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0043154 GO:GO:0006917 GO:GO:0044344 GO:GO:0046872
GO:GO:0001938 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0005667 GO:GO:0001077 GO:GO:0030522 GO:GO:0002042
GO:GO:0035924 GO:GO:0035767 eggNOG:NOG245120 CTD:3164
HOGENOM:HOG000230925 HOVERGEN:HBG052663 KO:K04465 OrthoDB:EOG4VMFF7
EMBL:X97226 RefSeq:NP_001003227.1 UniGene:Cfa.1213
ProteinModelPortal:P51666 SMR:P51666 STRING:P51666 GeneID:403897
KEGG:cfa:403897 InParanoid:P51666 NextBio:20817389 Uniprot:P51666
Length = 598
Score = 174 (66.3 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 37/93 (39%), Positives = 54/93 (58%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRY-------G 55
+GFF+R++QK +Y CL + C V + RNRCQ+CRF+KCLAVGM ++ VR G
Sbjct: 288 KGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 347
Query: 56 RVPKRSRERSDSETGSTRVSTTGAEPPSSLETA 88
R+P + ++ D+ + S A S TA
Sbjct: 348 RLPSKPKQPPDASPANLLTSLVRAHLDSGPSTA 380
Score = 98 (39.6 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF ++ S++ + ++A+++PGF +LS DQ +L++ F EL+I Y S+ + L
Sbjct: 404 QQFYDLLSGSLEVIRKWAEKIPGFAELSPGDQDLLLESAFLELFILRLAYRSK-PAEGKL 462
Query: 223 TFSDGMYVTRQQ 234
F G+ + R Q
Sbjct: 463 IFCSGLVLHRLQ 474
>UNIPROTKB|F1NHW8 [details] [associations]
symbol:PPARD "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0001890 "placenta development" evidence=IEA]
[GO:0006635 "fatty acid beta-oxidation" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0008144 "drug binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0008366 "axon ensheathment"
evidence=IEA] [GO:0014068 "positive regulation of
phosphatidylinositol 3-kinase cascade" evidence=IEA] [GO:0015908
"fatty acid transport" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0031589 "cell-substrate
adhesion" evidence=IEA] [GO:0042060 "wound healing" evidence=IEA]
[GO:0042640 "anagen" evidence=IEA] [GO:0043616 "keratinocyte
proliferation" evidence=IEA] [GO:0045598 "regulation of fat cell
differentiation" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0050680 "negative
regulation of epithelial cell proliferation" evidence=IEA]
[GO:0051546 "keratinocyte migration" evidence=IEA] [GO:0060612
"adipose tissue development" evidence=IEA] [GO:0070539 "linoleic
acid binding" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003075
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01290
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 GO:GO:0006915 GO:GO:0045893 GO:GO:0043616
GO:GO:0030154 GO:GO:0046872 GO:GO:0008144 GO:GO:0008284
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0014068
GO:GO:0015908 GO:GO:0006635 GO:GO:0000122 GO:GO:0042060
GO:GO:0045598 GO:GO:0050680 GO:GO:0031589
GeneTree:ENSGT00700000104361 GO:GO:0070539 GO:GO:0051546
OMA:SSLFLND EMBL:AC140943 IPI:IPI00588578
Ensembl:ENSGALT00000004076 Uniprot:F1NHW8
Length = 443
Score = 181 (68.8 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 30/63 (47%), Positives = 50/63 (79%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ ++EY +C R C + + NRN+CQYCRF+KCL++GMS +++R+GR+P+
Sbjct: 96 KGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQKCLSLGMSHNAIRFGRMPEAE 153
Query: 62 RER 64
+ +
Sbjct: 154 KRK 156
Score = 86 (35.3 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L ++G +VTR+
Sbjct: 258 TVRELTEFAKSIPSFIGLYLNDQVTLLKYGVHEAIFAMLASIMNKDGLLVANGNGFVTRE 317
Query: 234 QL 235
L
Sbjct: 318 FL 319
>UNIPROTKB|P18119 [details] [associations]
symbol:thrb-b "Thyroid hormone receptor beta-B"
species:8355 "Xenopus laevis" [GO:0004887 "thyroid hormone receptor
activity" evidence=TAS] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887 HOVERGEN:HBG005606
EMBL:M35362 EMBL:M35361 PIR:D36067 RefSeq:NP_001081250.1
UniGene:Xl.57134 ProteinModelPortal:P18119 SMR:P18119 PRIDE:P18119
GeneID:397734 KEGG:xla:397734 CTD:397734 Xenbase:XB-GENE-6252616
Uniprot:P18119
Length = 414
Score = 156 (60.0 bits), Expect = 5.5e-20, Sum P(2) = 5.5e-20
Identities = 28/52 (53%), Positives = 38/52 (73%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV 52
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC VGM+ D V
Sbjct: 81 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCKTVGMATDLV 132
Score = 127 (49.8 bits), Expect = 5.5e-20, Sum P(2) = 5.5e-20
Identities = 30/74 (40%), Positives = 47/74 (63%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ QF +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +L
Sbjct: 222 FSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 281
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 282 TLNGEMAVTRGQLK 295
>UNIPROTKB|G3X7C1 [details] [associations]
symbol:THRB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031490 "chromatin DNA
binding" evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0009887 "organ morphogenesis" evidence=IEA] [GO:0008050 "female
courtship behavior" evidence=IEA] [GO:0008016 "regulation of heart
contraction" evidence=IEA] [GO:0007621 "negative regulation of
female receptivity" evidence=IEA] [GO:0007605 "sensory perception
of sound" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0008016
GO:GO:0000122 GO:GO:0009887 GO:GO:0007605 GO:GO:0031490
GO:GO:0004887 GO:GO:0007621 GO:GO:0008050
GeneTree:ENSGT00680000099662 OMA:HLIQATW EMBL:DAAA02061150
EMBL:DAAA02061151 EMBL:DAAA02061152 Ensembl:ENSBTAT00000023670
Uniprot:G3X7C1
Length = 459
Score = 158 (60.7 bits), Expect = 6.5e-20, Sum P(2) = 6.5e-20
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV 52
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V
Sbjct: 126 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLV 177
Score = 122 (48.0 bits), Expect = 6.5e-20, Sum P(2) = 6.5e-20
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ F +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +L
Sbjct: 267 FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 326
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 327 TLNGEMAVTRGQLK 340
>UNIPROTKB|E9PK95 [details] [associations]
symbol:RXRB "Retinoic acid receptor RXR-beta" species:9606
"Homo sapiens" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000003
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700
GO:GO:0006351 EMBL:AL645940 EMBL:AL662824 EMBL:AL844527
EMBL:CR759733 EMBL:CR936877 EMBL:CR354565 HGNC:HGNC:10478
ChiTaRS:RXRB IPI:IPI00984407 SMR:E9PK95 Ensembl:ENST00000531100
Ensembl:ENST00000544186 Ensembl:ENST00000546880
Ensembl:ENST00000549889 Ensembl:ENST00000552670
Ensembl:ENST00000553072 UCSC:uc011dqr.2 Uniprot:E9PK95
Length = 347
Score = 166 (63.5 bits), Expect = 6.6e-20, Sum P(2) = 6.6e-20
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K C V + RNRCQYCR++KCLA GM R++V+ R +R
Sbjct: 36 KGFFKRTIRKDLTYSC-RDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEER--QRG 92
Query: 62 RERSDSETGS 71
+++ G+
Sbjct: 93 KDKDGDGEGA 102
Score = 95 (38.5 bits), Expect = 6.6e-20, Sum P(2) = 6.6e-20
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTR 232
+VE+AKR+P F L DDQ+IL++ G+ EL I S + D + + G++V R
Sbjct: 160 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHR 215
>UNIPROTKB|F1PPW9 [details] [associations]
symbol:THRB "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004887 "thyroid hormone receptor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887
GeneTree:ENSGT00680000099662 CTD:7068 KO:K08362 OMA:HLIQATW
EMBL:AAEX03013558 RefSeq:XP_862690.2 Ensembl:ENSCAFT00000038637
GeneID:403599 KEGG:cfa:403599 Uniprot:F1PPW9
Length = 461
Score = 158 (60.7 bits), Expect = 6.6e-20, Sum P(2) = 6.6e-20
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV 52
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V
Sbjct: 128 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLV 179
Score = 122 (48.0 bits), Expect = 6.6e-20, Sum P(2) = 6.6e-20
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ F +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +L
Sbjct: 269 FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 328
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 329 TLNGEMAVTRGQLK 342
>UNIPROTKB|P10828 [details] [associations]
symbol:THRB "Thyroid hormone receptor beta" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007621 "negative regulation of female
receptivity" evidence=IEA] [GO:0008016 "regulation of heart
contraction" evidence=IEA] [GO:0008050 "female courtship behavior"
evidence=IEA] [GO:0009887 "organ morphogenesis" evidence=IEA]
[GO:0031490 "chromatin DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=NAS] [GO:0003714 "transcription corepressor activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0006351
"transcription, DNA-dependent" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] Reactome:REACT_71 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR001728
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0003714
GO:GO:0005654 EMBL:CH471055 GO:GO:0046872 GO:GO:0003677
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0008016
Pathway_Interaction_DB:rxr_vdr_pathway GO:GO:0000122 GO:GO:0009887
GO:GO:0007605 DrugBank:DB00451 DrugBank:DB00279 GO:GO:0006367
GO:GO:0031490 GO:GO:0004887 HOVERGEN:HBG005606 GO:GO:0007621
GO:GO:0008050 PDB:2NLL PDBsum:2NLL Orphanet:97927 eggNOG:NOG272726
HOGENOM:HOG000010313 CTD:7068 KO:K08362 OrthoDB:EOG4Z8XWB
EMBL:M26747 EMBL:X04707 EMBL:AK096628 EMBL:AC012087 EMBL:AC093927
EMBL:AC098971 EMBL:AC099054 EMBL:AC112217 EMBL:BC106929
EMBL:BC106930 EMBL:AY286465 EMBL:AY286466 EMBL:AY286467
EMBL:AY286468 EMBL:AY286469 EMBL:AY286470 EMBL:AY286471 EMBL:X74497
IPI:IPI00444844 IPI:IPI00446999 PIR:A25237 PIR:S40152
RefSeq:NP_000452.2 RefSeq:NP_001121648.1 RefSeq:NP_001121649.1
RefSeq:NP_001239563.1 UniGene:Hs.187861 UniGene:Hs.713754 PDB:1BSX
PDB:1N46 PDB:1NAX PDB:1NQ0 PDB:1NQ1 PDB:1NQ2 PDB:1NUO PDB:1Q4X
PDB:1R6G PDB:1XZX PDB:1Y0X PDB:2J4A PDB:2PIN PDB:3D57 PDB:3GWS
PDB:3IMY PDB:3JZC PDBsum:1BSX PDBsum:1N46 PDBsum:1NAX PDBsum:1NQ0
PDBsum:1NQ1 PDBsum:1NQ2 PDBsum:1NUO PDBsum:1Q4X PDBsum:1R6G
PDBsum:1XZX PDBsum:1Y0X PDBsum:2J4A PDBsum:2PIN PDBsum:3D57
PDBsum:3GWS PDBsum:3IMY PDBsum:3JZC ProteinModelPortal:P10828
SMR:P10828 DIP:DIP-5991N IntAct:P10828 MINT:MINT-1508903
STRING:P10828 PhosphoSite:P10828 DMDM:586092 PRIDE:P10828
DNASU:7068 Ensembl:ENST00000280696 Ensembl:ENST00000356447
Ensembl:ENST00000396671 Ensembl:ENST00000415021
Ensembl:ENST00000416420 Ensembl:ENST00000447875 GeneID:7068
KEGG:hsa:7068 UCSC:uc003ccx.4 GeneCards:GC03M024158 HGNC:HGNC:11799
HPA:CAB002008 HPA:CAB002009 MIM:145650 MIM:188570 MIM:190160
MIM:274300 neXtProt:NX_P10828 Orphanet:3221 Orphanet:165994
PharmGKB:PA36508 OMA:HLIQATW BindingDB:P10828 ChEMBL:CHEMBL1947
EvolutionaryTrace:P10828 GenomeRNAi:7068 NextBio:27637
ArrayExpress:P10828 Bgee:P10828 CleanEx:HS_THRB
Genevestigator:P10828 GermOnline:ENSG00000151090 Uniprot:P10828
Length = 461
Score = 158 (60.7 bits), Expect = 6.6e-20, Sum P(2) = 6.6e-20
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV 52
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V
Sbjct: 128 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLV 179
Score = 122 (48.0 bits), Expect = 6.6e-20, Sum P(2) = 6.6e-20
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ F +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +L
Sbjct: 269 FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 328
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 329 TLNGEMAVTRGQLK 342
>UNIPROTKB|F1RS47 [details] [associations]
symbol:THRB "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031490 "chromatin DNA
binding" evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0009887 "organ morphogenesis" evidence=IEA] [GO:0008050 "female
courtship behavior" evidence=IEA] [GO:0008016 "regulation of heart
contraction" evidence=IEA] [GO:0007621 "negative regulation of
female receptivity" evidence=IEA] [GO:0007605 "sensory perception
of sound" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0008016
GO:GO:0000122 GO:GO:0009887 GO:GO:0007605 GO:GO:0031490
GO:GO:0004887 GO:GO:0007621 GO:GO:0008050
GeneTree:ENSGT00680000099662 OMA:HLIQATW EMBL:CU463272
EMBL:CU633256 Ensembl:ENSSSCT00000012277 Uniprot:F1RS47
Length = 461
Score = 158 (60.7 bits), Expect = 6.6e-20, Sum P(2) = 6.6e-20
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSV 52
+GFFRR+IQK + Y C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V
Sbjct: 128 KGFFRRTIQKNLHPSYACKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLV 179
Score = 122 (48.0 bits), Expect = 6.6e-20, Sum P(2) = 6.6e-20
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ F +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + R +S +L
Sbjct: 269 FSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 328
Query: 223 TFSDGMYVTRQQLE 236
T + M VTR QL+
Sbjct: 329 TLNGEMAVTRGQLK 342
>UNIPROTKB|Q0V8F0 [details] [associations]
symbol:NR4A1 "Nuclear receptor subfamily 4 group A member
1" species:9913 "Bos taurus" [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0044344 "cellular
response to fibroblast growth factor stimulus" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0043154 "negative regulation of cysteine-type endopeptidase
activity involved in apoptotic process" evidence=IEA] [GO:0042803
"protein homodimerization activity" evidence=IEA] [GO:0035924
"cellular response to vascular endothelial growth factor stimulus"
evidence=IEA] [GO:0035767 "endothelial cell chemotaxis"
evidence=IEA] [GO:0006917 "induction of apoptosis" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0002042 "cell migration involved in sprouting angiogenesis"
evidence=IEA] [GO:0001938 "positive regulation of endothelial cell
proliferation" evidence=IEA] [GO:0001077 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003070 InterPro:IPR003071
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01284 PRINTS:PR01285
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0043154 GO:GO:0006917 GO:GO:0044344 GO:GO:0046872
GO:GO:0001938 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0005667 GO:GO:0001077 GO:GO:0030522 GO:GO:0002042
GO:GO:0035924 GO:GO:0035767 eggNOG:NOG245120
GeneTree:ENSGT00640000091364 EMBL:BT026269 IPI:IPI00686023
RefSeq:NP_001069379.1 UniGene:Bt.23373 ProteinModelPortal:Q0V8F0
SMR:Q0V8F0 STRING:Q0V8F0 PRIDE:Q0V8F0 Ensembl:ENSBTAT00000000648
GeneID:528390 KEGG:bta:528390 CTD:3164 HOGENOM:HOG000230925
HOVERGEN:HBG052663 InParanoid:Q0V8F0 KO:K04465 OMA:KWAEKIP
OrthoDB:EOG4VMFF7 NextBio:20874811 ArrayExpress:Q0V8F0
Uniprot:Q0V8F0
Length = 598
Score = 172 (65.6 bits), Expect = 6.6e-20, Sum P(2) = 6.6e-20
Identities = 42/99 (42%), Positives = 61/99 (61%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R++QK +Y CL + C V + RNRCQ+CRF+KCLAVGM ++ VR + R R
Sbjct: 288 KGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGR-R 346
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSLPSSTELD 101
R S+ T+ A +SL A + S PS+++LD
Sbjct: 347 GRLPSKPKQPP-ETSPAHLLTSLVRAH-LDSGPSTSKLD 383
Score = 98 (39.6 bits), Expect = 6.6e-20, Sum P(2) = 6.6e-20
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF ++ S++ + ++A+++PGF +LS DQ +L++ F EL+I Y S+ + L
Sbjct: 404 QQFYDLLSGSLEVIRKWAEKIPGFAELSPGDQDLLLESAFLELFILRLAYRSK-PAEGKL 462
Query: 223 TFSDGMYVTRQQ 234
F G+ + R Q
Sbjct: 463 IFCSGLVLHRLQ 474
>UNIPROTKB|P22736 [details] [associations]
symbol:NR4A1 "Nuclear receptor subfamily 4 group A member
1" species:9606 "Homo sapiens" [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0001077 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0006917 "induction of apoptosis" evidence=IEA] [GO:0042803
"protein homodimerization activity" evidence=IEA] [GO:0043154
"negative regulation of cysteine-type endopeptidase activity
involved in apoptotic process" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0007165 "signal
transduction" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=TAS] [GO:0007173 "epidermal growth factor
receptor signaling pathway" evidence=TAS] [GO:0008543 "fibroblast
growth factor receptor signaling pathway" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0048011 "neurotrophin TRK
receptor signaling pathway" evidence=TAS] [GO:0048015
"phosphatidylinositol-mediated signaling" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0035924 "cellular response to
vascular endothelial growth factor stimulus" evidence=IMP]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=IMP] [GO:0044344 "cellular response to fibroblast growth
factor stimulus" evidence=IMP] [GO:0035767 "endothelial cell
chemotaxis" evidence=IMP] [GO:0002042 "cell migration involved in
sprouting angiogenesis" evidence=IDA] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0030522
"intracellular receptor mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003070 InterPro:IPR003071
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01284 PRINTS:PR01285
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
Pathway_Interaction_DB:nfat_3pathway Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0007173
GO:GO:0008543 GO:GO:0048011 GO:GO:0043154 GO:GO:0005654
GO:GO:0006917 GO:GO:0046872 GO:GO:0003677 GO:GO:0001938
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
Pathway_Interaction_DB:rxr_vdr_pathway EMBL:CH471111 GO:GO:0005667
GO:GO:0001077 EMBL:AC025259 GO:GO:0048015 GO:GO:0006367
GO:GO:0002042 GO:GO:0035924 GO:GO:0035767 eggNOG:NOG245120 CTD:3164
HOGENOM:HOG000230925 HOVERGEN:HBG052663 KO:K04465 OrthoDB:EOG4VMFF7
EMBL:D49728 EMBL:L13740 EMBL:AK297526 EMBL:BC016147 IPI:IPI00743108
IPI:IPI01011914 PIR:A37251 RefSeq:NP_001189162.1 RefSeq:NP_002126.2
RefSeq:NP_775180.1 UniGene:Hs.524430 UniGene:Hs.670088 PDB:2QW4
PDB:3V3E PDB:3V3Q PDBsum:2QW4 PDBsum:3V3E PDBsum:3V3Q
ProteinModelPortal:P22736 SMR:P22736 IntAct:P22736
MINT:MINT-2859679 STRING:P22736 PhosphoSite:P22736 DMDM:127819
PRIDE:P22736 DNASU:3164 Ensembl:ENST00000243050
Ensembl:ENST00000360284 Ensembl:ENST00000394824
Ensembl:ENST00000394825 Ensembl:ENST00000550082 GeneID:3164
KEGG:hsa:3164 UCSC:uc001rzs.3 GeneCards:GC12P052416
H-InvDB:HIX0171621 HGNC:HGNC:7980 MIM:139139 neXtProt:NX_P22736
PharmGKB:PA31761 InParanoid:P22736 PhylomeDB:P22736
BindingDB:P22736 ChEMBL:CHEMBL1293229 ChiTaRS:NR4A1
EvolutionaryTrace:P22736 GenomeRNAi:3164 NextBio:12546
ArrayExpress:P22736 Bgee:P22736 CleanEx:HS_NR4A1
Genevestigator:P22736 GermOnline:ENSG00000123358 Uniprot:P22736
Length = 598
Score = 174 (66.3 bits), Expect = 8.4e-20, Sum P(2) = 8.4e-20
Identities = 37/93 (39%), Positives = 54/93 (58%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRY-------G 55
+GFF+R++QK +Y CL + C V + RNRCQ+CRF+KCLAVGM ++ VR G
Sbjct: 288 KGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 347
Query: 56 RVPKRSRERSDSETGSTRVSTTGAEPPSSLETA 88
R+P + ++ D+ + S A S TA
Sbjct: 348 RLPSKPKQPPDASPANLLTSLVRAHLDSGPSTA 380
Score = 95 (38.5 bits), Expect = 8.4e-20, Sum P(2) = 8.4e-20
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF ++ S++ + ++A+++PGF +LS DQ +L++ F EL+I Y S+ + L
Sbjct: 404 QQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSK-PGEGKL 462
Query: 223 TFSDGMYVTRQQ 234
F G+ + R Q
Sbjct: 463 IFCSGLVLHRLQ 474
>UNIPROTKB|Q99ND3 [details] [associations]
symbol:Ppard "Protein Ppard" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0001890 "placenta
development" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006635 "fatty acid beta-oxidation" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0008144 "drug binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0008366 "axon ensheathment" evidence=IEA]
[GO:0014068 "positive regulation of phosphatidylinositol 3-kinase
cascade" evidence=IEA] [GO:0015908 "fatty acid transport"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0031589 "cell-substrate adhesion" evidence=IEA] [GO:0042060
"wound healing" evidence=IEA] [GO:0042640 "anagen" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0043616 "keratinocyte proliferation" evidence=IEA] [GO:0045598
"regulation of fat cell differentiation" evidence=IEA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0050680 "negative regulation of epithelial cell proliferation"
evidence=IEA] [GO:0051546 "keratinocyte migration" evidence=IEA]
[GO:0060612 "adipose tissue development" evidence=IEA] [GO:0070539
"linoleic acid binding" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003074
InterPro:IPR003075 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PRINTS:PR01290 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:3370 GO:GO:0005634 GO:GO:0006915
GO:GO:0045893 GO:GO:0043616 GO:GO:0030154 GO:GO:0046872
GO:GO:0008144 GO:GO:0008284 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0014068 GO:GO:0060612 GO:GO:0015908
GO:GO:0006635 GO:GO:0000122 GO:GO:0001890 GO:GO:0042060
GO:GO:0042640 GO:GO:0045598 GO:GO:0050680 GO:GO:0031589
EMBL:CH473988 GO:GO:0008366 GeneTree:ENSGT00700000104361
GO:GO:0070539 GO:GO:0051546 HOVERGEN:HBG106004 CTD:5467 KO:K04504
OMA:SSLFLND EMBL:AJ306400 IPI:IPI00325169 RefSeq:NP_037273.2
UniGene:Rn.96181 HSSP:Q03181 SMR:Q99ND3 STRING:Q99ND3
Ensembl:ENSRNOT00000042539 GeneID:25682 KEGG:rno:25682
InParanoid:Q99ND3 NextBio:607651 Genevestigator:Q99ND3
Uniprot:Q99ND3
Length = 440
Score = 179 (68.1 bits), Expect = 8.4e-20, Sum P(2) = 8.4e-20
Identities = 30/63 (47%), Positives = 50/63 (79%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ +++Y +C D C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 94 KGFFRRTIRMKLKYEKC--DRICKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 151
Query: 62 RER 64
+ +
Sbjct: 152 KRK 154
Score = 85 (35.0 bits), Expect = 8.4e-20, Sum P(2) = 8.4e-20
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+V+ + EFAK +P F L +DQ+ L+K G E ++ + L ++G +VT +
Sbjct: 255 TVRELTEFAKNIPNFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTHE 314
Query: 234 QL 235
L
Sbjct: 315 FL 316
>UNIPROTKB|F5GXF0 [details] [associations]
symbol:NR4A1 "Nuclear receptor subfamily 4 group A member
1" species:9606 "Homo sapiens" [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003070 InterPro:IPR003071 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01284 PRINTS:PR01285 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
EMBL:AC025259 GO:GO:0030522 OMA:KWAEKIP HGNC:HGNC:7980
ChiTaRS:NR4A1 IPI:IPI00027454 ProteinModelPortal:F5GXF0 SMR:F5GXF0
PRIDE:F5GXF0 Ensembl:ENST00000545748 ArrayExpress:F5GXF0
Bgee:F5GXF0 Uniprot:F5GXF0
Length = 652
Score = 174 (66.3 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 37/93 (39%), Positives = 54/93 (58%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRY-------G 55
+GFF+R++QK +Y CL + C V + RNRCQ+CRF+KCLAVGM ++ VR G
Sbjct: 342 KGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 401
Query: 56 RVPKRSRERSDSETGSTRVSTTGAEPPSSLETA 88
R+P + ++ D+ + S A S TA
Sbjct: 402 RLPSKPKQPPDASPANLLTSLVRAHLDSGPSTA 434
Score = 95 (38.5 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF ++ S++ + ++A+++PGF +LS DQ +L++ F EL+I Y S+ + L
Sbjct: 458 QQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSK-PGEGKL 516
Query: 223 TFSDGMYVTRQQ 234
F G+ + R Q
Sbjct: 517 IFCSGLVLHRLQ 528
>UNIPROTKB|K7GQM0 [details] [associations]
symbol:RXRB "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] InterPro:IPR000003
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GeneTree:ENSGT00690000101777
EMBL:CT737383 Ensembl:ENSSSCT00000035096 Uniprot:K7GQM0
Length = 388
Score = 166 (63.5 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K C V + RNRCQYCR++KCLA GM R++V+ R +R
Sbjct: 129 KGFFKRTIRKDLTYSC-RDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEER--QRG 185
Query: 62 RERSDSETGS 71
+++ G+
Sbjct: 186 KDKDGDGEGA 195
Score = 95 (38.5 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTR 232
+VE+AKR+P F L DDQ+IL++ G+ EL I S + D + + G++V R
Sbjct: 253 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHR 308
>UNIPROTKB|F8VZR5 [details] [associations]
symbol:RXRB "Retinoic acid receptor RXR-beta" species:9606
"Homo sapiens" [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000003 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351 EMBL:AL662824
EMBL:AL844527 EMBL:CR759733 EMBL:CR936877 EMBL:CR354565
HGNC:HGNC:10478 ChiTaRS:RXRB IPI:IPI01022583 SMR:F8VZR5
Ensembl:ENST00000546472 Ensembl:ENST00000548862
Ensembl:ENST00000549199 Ensembl:ENST00000552454
Ensembl:ENST00000552822 Uniprot:F8VZR5
Length = 389
Score = 166 (63.5 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K C V + RNRCQYCR++KCLA GM R++V+ R +R
Sbjct: 87 KGFFKRTIRKDLTYSC-RDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEER--QRG 143
Query: 62 RERSDSETGS 71
+++ G+
Sbjct: 144 KDKDGDGEGA 153
Score = 95 (38.5 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTR 232
+VE+AKR+P F L DDQ+IL++ G+ EL I S + D + + G++V R
Sbjct: 206 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHR 261
>UNIPROTKB|F8VNP5 [details] [associations]
symbol:RXRB "Retinoic acid receptor RXR-beta" species:9606
"Homo sapiens" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000003
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700
GO:GO:0006351 EMBL:AL662824 EMBL:AL844527 EMBL:CR759733
EMBL:CR936877 EMBL:CR354565 HGNC:HGNC:10478 ChiTaRS:RXRB
IPI:IPI01020693 SMR:F8VNP5 Ensembl:ENST00000546468
Ensembl:ENST00000547763 Ensembl:ENST00000549662
Ensembl:ENST00000550626 Ensembl:ENST00000550731 Uniprot:F8VNP5
Length = 392
Score = 166 (63.5 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K C V + RNRCQYCR++KCLA GM R++V+ R +R
Sbjct: 87 KGFFKRTIRKDLTYSC-RDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEER--QRG 143
Query: 62 RERSDSETGS 71
+++ G+
Sbjct: 144 KDKDGDGEGA 153
Score = 95 (38.5 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTR 232
+VE+AKR+P F L DDQ+IL++ G+ EL I S + D + + G++V R
Sbjct: 209 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHR 264
>UNIPROTKB|A5D9P5 [details] [associations]
symbol:RXRB "Retinoid X receptor, beta" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] InterPro:IPR000003
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700
GO:GO:0006351 HOVERGEN:HBG005606 GeneTree:ENSGT00690000101777
InterPro:IPR021780 Pfam:PF11825 EMBL:CT737383 EMBL:BX640585
ProteinModelPortal:A5D9P5 SMR:A5D9P5 STRING:A5D9P5
Ensembl:ENSSSCT00000036293 Uniprot:A5D9P5
Length = 414
Score = 166 (63.5 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K C V + RNRCQYCR++KCLA GM R++V+ R +R
Sbjct: 103 KGFFKRTIRKDLTYSC-RDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEER--QRG 159
Query: 62 RERSDSETGS 71
+++ G+
Sbjct: 160 KDKDGDGEGA 169
Score = 95 (38.5 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTR 232
+VE+AKR+P F L DDQ+IL++ G+ EL I S + D + + G++V R
Sbjct: 227 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHR 282
>RGD|3370 [details] [associations]
symbol:Ppard "peroxisome proliferator-activated receptor delta"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001890 "placenta development" evidence=ISO] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO;TAS] [GO:0003713
"transcription coactivator activity" evidence=IDA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=ISO;TAS] [GO:0005504 "fatty
acid binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006029 "proteoglycan metabolic process" evidence=IDA]
[GO:0006629 "lipid metabolic process" evidence=ISO;IDA] [GO:0006776
"vitamin A metabolic process" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0007507 "heart development" evidence=IEP]
[GO:0007566 "embryo implantation" evidence=IEP] [GO:0008144 "drug
binding" evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0008284 "positive regulation of cell proliferation" evidence=ISO]
[GO:0008289 "lipid binding" evidence=ISO] [GO:0008366 "axon
ensheathment" evidence=ISO] [GO:0008654 "phospholipid biosynthetic
process" evidence=IDA] [GO:0009299 "mRNA transcription" evidence=IDA]
[GO:0009749 "response to glucose stimulus" evidence=IEP] [GO:0010033
"response to organic substance" evidence=IEP] [GO:0014068 "positive
regulation of phosphatidylinositol 3-kinase cascade" evidence=ISO]
[GO:0014823 "response to activity" evidence=IEP] [GO:0014912
"negative regulation of smooth muscle cell migration" evidence=IDA]
[GO:0019395 "fatty acid oxidation" evidence=IDA] [GO:0030154 "cell
differentiation" evidence=ISO] [GO:0030308 "negative regulation of
cell growth" evidence=IDA] [GO:0030522 "intracellular receptor
mediated signaling pathway" evidence=ISO] [GO:0031589 "cell-substrate
adhesion" evidence=ISO] [GO:0032024 "positive regulation of insulin
secretion" evidence=IDA] [GO:0032966 "negative regulation of collagen
biosynthetic process" evidence=IMP] [GO:0033189 "response to vitamin
A" evidence=IEP] [GO:0042060 "wound healing" evidence=ISO]
[GO:0042127 "regulation of cell proliferation" evidence=ISO]
[GO:0042640 "anagen" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=IDA] [GO:0043616 "keratinocyte
proliferation" evidence=ISO] [GO:0045598 "regulation of fat cell
differentiation" evidence=ISO] [GO:0045684 "positive regulation of
epidermis development" evidence=IDA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISO] [GO:0045909 "positive
regulation of vasodilation" evidence=IDA] [GO:0046697
"decidualization" evidence=IEP] [GO:0048662 "negative regulation of
smooth muscle cell proliferation" evidence=IDA] [GO:0050680 "negative
regulation of epithelial cell proliferation" evidence=ISO]
[GO:0050728 "negative regulation of inflammatory response"
evidence=IDA] [GO:0051059 "NF-kappaB binding" evidence=IPI]
[GO:0051546 "keratinocyte migration" evidence=ISO] [GO:0060612
"adipose tissue development" evidence=ISO] [GO:0070539 "linoleic acid
binding" evidence=ISO] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003075
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01290
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430 RGD:3370
GO:GO:0005634 GO:GO:0043066 GO:GO:0007507 GO:GO:0030308 GO:GO:0014823
GO:GO:0046872 GO:GO:0050728 GO:GO:0009749 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0032966 GO:GO:0045909 GO:GO:0032024
GO:GO:0019395 GO:GO:0008654 GO:GO:0003713 GO:GO:0005504 GO:GO:0014912
GO:GO:0048662 GO:GO:0033189 GO:GO:0006776 GO:GO:0006029 GO:GO:0046697
GO:GO:0007566 GO:GO:0009299 HOVERGEN:HBG106004 IPI:IPI00325169
UniGene:Rn.96181 HSSP:Q03181 EMBL:U75918 ProteinModelPortal:Q9QWI0
SMR:Q9QWI0 STRING:Q9QWI0 UCSC:RGD:3370 InParanoid:Q9QWI0
Genevestigator:Q9QWI0 GO:GO:0045684 Uniprot:Q9QWI0
Length = 440
Score = 179 (68.1 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 30/63 (47%), Positives = 50/63 (79%)
Query: 3 QGFFRRSIQKQIEY-RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFFRR+I+ +++Y +C D C + + NRN+CQYCRF+KCLA+GMS +++R+GR+P+
Sbjct: 94 KGFFRRTIRMKLKYEKC--DRICKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAE 151
Query: 62 RER 64
+ +
Sbjct: 152 KRK 154
Score = 82 (33.9 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGM-YVTRQ 233
+V+ + EFAK +P F L +DQ+ L+K G + ++ + L ++G +VT +
Sbjct: 255 TVRELTEFAKNIPNFSSLFLNDQVTLLKYGVHQAIFAMLASIVNKDGLLVANGSGFVTHE 314
Query: 234 QL 235
L
Sbjct: 315 FL 316
>RGD|3611 [details] [associations]
symbol:Rxrb "retinoid X receptor beta" species:10116 "Rattus
norvegicus" [GO:0001701 "in utero embryonic development"
evidence=ISO] [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=ISO] [GO:0004886 "9-cis retinoic acid receptor activity"
evidence=ISO;IDA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0030375 "thyroid hormone
receptor coactivator activity" evidence=IDA] [GO:0031641 "regulation
of myelination" evidence=IDA] [GO:0042809 "vitamin D receptor
binding" evidence=IDA] [GO:0042974 "retinoic acid receptor binding"
evidence=IDA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA;ISO] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0046966 "thyroid hormone receptor binding" evidence=IDA]
[GO:0046982 "protein heterodimerization activity" evidence=IDA]
[GO:0048384 "retinoic acid receptor signaling pathway" evidence=ISO]
[GO:0055012 "ventricular cardiac muscle cell differentiation"
evidence=ISO] [GO:0060038 "cardiac muscle cell proliferation"
evidence=ISO] [GO:0071300 "cellular response to retinoic acid"
evidence=ISO] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:3611 GO:GO:0005634 GO:GO:0046872
eggNOG:NOG327099 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0071300
GO:GO:0045944 GO:GO:0044212 GO:GO:0030375 GO:GO:0046982 GO:GO:0042974
GO:GO:0046966 GO:GO:0060038 GO:GO:0031641 HOVERGEN:HBG005606
GO:GO:0042809 GO:GO:0055012 OrthoDB:EOG4SJ5DV GO:GO:0004886
EMBL:M81766 IPI:IPI00394256 PIR:A41651 UniGene:Rn.49295
ProteinModelPortal:P49743 SMR:P49743 STRING:P49743 PhosphoSite:P49743
UCSC:RGD:3611 InParanoid:P49743 BindingDB:P49743 ChEMBL:CHEMBL2805
ArrayExpress:P49743 Genevestigator:P49743
GermOnline:ENSRNOG00000000464 Uniprot:P49743
Length = 458
Score = 166 (63.5 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K C V + RNRCQYCR++KCLA GM R++V+ R +R
Sbjct: 151 KGFFKRTIRKDLTYSC-RDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEER--QRG 207
Query: 62 RERSDSETGS 71
+++ G+
Sbjct: 208 KDKDGDGDGA 217
Score = 95 (38.5 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTR 232
+VE+AKR+P F L DDQ+IL++ G+ EL I S + D + + G++V R
Sbjct: 275 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHR 330
>RGD|620029 [details] [associations]
symbol:Nr4a1 "nuclear receptor subfamily 4, group A, member 1"
species:10116 "Rattus norvegicus" [GO:0001077 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA;ISO] [GO:0001938 "positive regulation
of endothelial cell proliferation" evidence=IEA;ISO] [GO:0002042
"cell migration involved in sprouting angiogenesis"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005667 "transcription
factor complex" evidence=IEA;ISO] [GO:0006915 "apoptotic process"
evidence=ISO] [GO:0006917 "induction of apoptosis"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0035767 "endothelial cell chemotaxis" evidence=IEA;ISO]
[GO:0035914 "skeletal muscle cell differentiation" evidence=ISO]
[GO:0035924 "cellular response to vascular endothelial growth
factor stimulus" evidence=IEA;ISO] [GO:0042803 "protein
homodimerization activity" evidence=IEA;ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=IEA;ISO] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA;ISO] [GO:0044344 "cellular response to
fibroblast growth factor stimulus" evidence=IEA;ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0046982 "protein
heterodimerization activity" evidence=IEA;ISO] [GO:0071310
"cellular response to organic substance" evidence=ISO]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003070 InterPro:IPR003071 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01284 PRINTS:PR01285 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 RGD:620029
GO:GO:0005634 GO:GO:0043154 GO:GO:0006917 GO:GO:0044344
GO:GO:0046872 GO:GO:0001938 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0005667 GO:GO:0001077 GO:GO:0030522
GO:GO:0002042 GO:GO:0035924 GO:GO:0035767 eggNOG:NOG245120
GeneTree:ENSGT00640000091364 CTD:3164 HOGENOM:HOG000230925
HOVERGEN:HBG052663 KO:K04465 OMA:KWAEKIP OrthoDB:EOG4VMFF7
EMBL:U17254 EMBL:BC097313 IPI:IPI00211154 PIR:JQ0623
RefSeq:NP_077364.2 UniGene:Rn.10000 PDB:1CIT PDB:1YJE PDBsum:1CIT
PDBsum:1YJE ProteinModelPortal:P22829 SMR:P22829 STRING:P22829
PhosphoSite:P22829 PRIDE:P22829 Ensembl:ENSRNOT00000010171
GeneID:79240 KEGG:rno:79240 InParanoid:P22829
EvolutionaryTrace:P22829 NextBio:614676 Genevestigator:P22829
GermOnline:ENSRNOG00000007607 Uniprot:P22829
Length = 597
Score = 171 (65.3 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 37/93 (39%), Positives = 54/93 (58%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRY-------G 55
+GFF+R++QK +Y CL + C V + RNRCQ+CRF+KCLAVGM ++ VR G
Sbjct: 287 KGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 346
Query: 56 RVPKRSRERSDSETGSTRVSTTGAEPPSSLETA 88
R+P + ++ D+ + S A S TA
Sbjct: 347 RLPSKPKQPPDASPTNLLTSLIRAHLDSGPNTA 379
Score = 93 (37.8 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF ++ S+ + ++A+++PGF +LS DQ +L++ F EL+I Y S+ + L
Sbjct: 403 QQFYDLLSGSLDVIRKWAEKIPGFIELSPGDQDLLLESAFLELFILRLAYRSK-PGEGKL 461
Query: 223 TFSDGMYVTRQQ 234
F G+ + R Q
Sbjct: 462 IFCSGLVLHRLQ 473
>UNIPROTKB|Q0GFF5 [details] [associations]
symbol:RXRbeta "Retinoid X receptor beta" species:9823 "Sus
scrofa" [GO:0071300 "cellular response to retinoic acid"
evidence=IEA] [GO:0060038 "cardiac muscle cell proliferation"
evidence=IEA] [GO:0055012 "ventricular cardiac muscle cell
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004886
"9-cis retinoic acid receptor activity" evidence=IEA] [GO:0001893
"maternal placenta development" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
eggNOG:NOG327099 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0071300
GO:GO:0045944 GO:GO:0044212 GO:GO:0060038 HOVERGEN:HBG005606
GeneTree:ENSGT00690000101777 GO:GO:0055012 HOGENOM:HOG000260821
OrthoDB:EOG4SJ5DV GO:GO:0004886 KO:K08525 CTD:6257 EMBL:CT737383
RefSeq:NP_001177175.1 UniGene:Ssc.1598 GeneID:100156801
KEGG:ssc:100156801 EMBL:DQ866835 SMR:Q0GFF5 STRING:Q0GFF5
Ensembl:ENSSSCT00000001642 Uniprot:Q0GFF5
Length = 484
Score = 166 (63.5 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K C V + RNRCQYCR++KCLA GM R++V+ R +R
Sbjct: 225 KGFFKRTIRKDLTYSC-RDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEER--QRG 281
Query: 62 RERSDSETGS 71
+++ G+
Sbjct: 282 KDKDGDGEGA 291
Score = 95 (38.5 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTR 232
+VE+AKR+P F L DDQ+IL++ G+ EL I S + D + + G++V R
Sbjct: 349 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHR 404
>MGI|MGI:98215 [details] [associations]
symbol:Rxrb "retinoid X receptor beta" species:10090 "Mus
musculus" [GO:0001701 "in utero embryonic development"
evidence=IGI] [GO:0001893 "maternal placenta development"
evidence=IGI] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=ISO] [GO:0004886 "9-cis retinoic acid receptor activity"
evidence=ISO;IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0030375 "thyroid hormone receptor
coactivator activity" evidence=ISO] [GO:0031641 "regulation of
myelination" evidence=ISO] [GO:0042809 "vitamin D receptor binding"
evidence=ISO] [GO:0042974 "retinoic acid receptor binding"
evidence=ISO] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IGI] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0046966 "thyroid
hormone receptor binding" evidence=ISO] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] [GO:0048384 "retinoic
acid receptor signaling pathway" evidence=IDA] [GO:0055012
"ventricular cardiac muscle cell differentiation" evidence=IGI;IMP]
[GO:0060038 "cardiac muscle cell proliferation" evidence=IGI]
[GO:0071300 "cellular response to retinoic acid" evidence=IDA]
InterPro:IPR000003 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 MGI:MGI:98215 GO:GO:0005634 GO:GO:0046872
eggNOG:NOG327099 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0071300
GO:GO:0001701 GO:GO:0045944 GO:GO:0044212 GO:GO:0001893
EMBL:AF100956 GO:GO:0060038 HOVERGEN:HBG005606
GeneTree:ENSGT00690000101777 GO:GO:0055012 HOGENOM:HOG000260821
OrthoDB:EOG4SJ5DV GO:GO:0004886 KO:K08525 CTD:6257 EMBL:D21831
EMBL:BC049773 EMBL:M84818 EMBL:M26804 EMBL:X66224 IPI:IPI00226615
IPI:IPI00890271 PIR:A34418 PIR:D41727 PIR:I84718 PIR:S26669
RefSeq:NP_001192145.1 RefSeq:NP_035436.1 UniGene:Mm.1243
ProteinModelPortal:P28704 SMR:P28704 IntAct:P28704 STRING:P28704
PhosphoSite:P28704 PaxDb:P28704 PRIDE:P28704
Ensembl:ENSMUST00000116612 GeneID:20182 KEGG:mmu:20182
UCSC:uc008ixs.1 InParanoid:P28704 BindingDB:P28704
ChEMBL:CHEMBL4047 NextBio:297709 Bgee:P28704 CleanEx:MM_RXRB
Genevestigator:P28704 GermOnline:ENSMUSG00000039656 Uniprot:P28704
Length = 520
Score = 166 (63.5 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K C V + RNRCQYCR++KCLA GM R++V+ R +R
Sbjct: 213 KGFFKRTIRKDLTYSC-RDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEER--QRG 269
Query: 62 RERSDSETGS 71
+++ G+
Sbjct: 270 KDKDGDGDGA 279
Score = 95 (38.5 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTR 232
+VE+AKR+P F L DDQ+IL++ G+ EL I S + D + + G++V R
Sbjct: 337 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHR 392
>UNIPROTKB|F1M9P1 [details] [associations]
symbol:Rxrb "Retinoic acid receptor RXR-beta" species:10116
"Rattus norvegicus" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0001893 "maternal placenta development"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004886 "9-cis retinoic acid receptor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0044212 "transcription regulatory region
DNA binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0055012 "ventricular cardiac muscle cell differentiation"
evidence=IEA] [GO:0060038 "cardiac muscle cell proliferation"
evidence=IEA] [GO:0071300 "cellular response to retinoic acid"
evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:3611 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0071300 GO:GO:0045944
GO:GO:0044212 GO:GO:0060038 GeneTree:ENSGT00690000101777
GO:GO:0055012 GO:GO:0004886 IPI:IPI00394256 OMA:FLPERHA
Ensembl:ENSRNOT00000041613 ArrayExpress:F1M9P1 Uniprot:F1M9P1
Length = 522
Score = 166 (63.5 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K C V + RNRCQYCR++KCLA GM R++V+ R +R
Sbjct: 211 KGFFKRTIRKDLTYSC-RDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEER--QRG 267
Query: 62 RERSDSETGS 71
+++ G+
Sbjct: 268 KDKDGDGDGA 277
Score = 95 (38.5 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTR 232
+VE+AKR+P F L DDQ+IL++ G+ EL I S + D + + G++V R
Sbjct: 335 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHR 390
>UNIPROTKB|A6H7I6 [details] [associations]
symbol:RXRB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071300 "cellular response to retinoic acid"
evidence=IEA] [GO:0060038 "cardiac muscle cell proliferation"
evidence=IEA] [GO:0055012 "ventricular cardiac muscle cell
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004886
"9-cis retinoic acid receptor activity" evidence=IEA] [GO:0001893
"maternal placenta development" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
eggNOG:NOG327099 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0071300
GO:GO:0045944 GO:GO:0044212 GO:GO:0060038 HOVERGEN:HBG005606
GeneTree:ENSGT00690000101777 GO:GO:0055012 HOGENOM:HOG000260821
OrthoDB:EOG4SJ5DV GO:GO:0004886 OMA:FLPERHA EMBL:DAAA02054891
EMBL:BC146260 IPI:IPI00709103 UniGene:Bt.57603 SMR:A6H7I6
STRING:A6H7I6 Ensembl:ENSBTAT00000000860 InParanoid:A6H7I6
Uniprot:A6H7I6
Length = 532
Score = 166 (63.5 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K C V + RNRCQYCR++KCLA GM R++V+ R +R
Sbjct: 225 KGFFKRTIRKDLTYSC-RDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEER--QRG 281
Query: 62 RERSDSETGS 71
+++ G+
Sbjct: 282 KDKDGDGEGA 291
Score = 95 (38.5 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTR 232
+VE+AKR+P F L DDQ+IL++ G+ EL I S + D + + G++V R
Sbjct: 349 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHR 404
>UNIPROTKB|A5D9P3 [details] [associations]
symbol:RXRB "Retinoid X receptor, beta" species:9823 "Sus
scrofa" [GO:0071300 "cellular response to retinoic acid"
evidence=IEA] [GO:0060038 "cardiac muscle cell proliferation"
evidence=IEA] [GO:0055012 "ventricular cardiac muscle cell
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004886
"9-cis retinoic acid receptor activity" evidence=IEA] [GO:0001893
"maternal placenta development" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
eggNOG:NOG327099 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0071300
GO:GO:0045944 GO:GO:0044212 GO:GO:0060038 HOVERGEN:HBG005606
GeneTree:ENSGT00690000101777 GO:GO:0055012 HOGENOM:HOG000260821
OrthoDB:EOG4SJ5DV GO:GO:0004886 KO:K08525 CTD:6257 EMBL:CT737383
EMBL:BX640585 RefSeq:NP_001177175.1 UniGene:Ssc.1598
ProteinModelPortal:A5D9P3 SMR:A5D9P3 STRING:A5D9P3
Ensembl:ENSSSCT00000036123 GeneID:100156801 KEGG:ssc:100156801
OMA:FLPERHA Uniprot:A5D9P3
Length = 532
Score = 166 (63.5 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K C V + RNRCQYCR++KCLA GM R++V+ R +R
Sbjct: 225 KGFFKRTIRKDLTYSC-RDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEER--QRG 281
Query: 62 RERSDSETGS 71
+++ G+
Sbjct: 282 KDKDGDGEGA 291
Score = 95 (38.5 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTR 232
+VE+AKR+P F L DDQ+IL++ G+ EL I S + D + + G++V R
Sbjct: 349 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHR 404
>UNIPROTKB|Q5TJF7 [details] [associations]
symbol:RXRB "Retinoic acid receptor RXR-beta" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
eggNOG:NOG327099 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700
GO:GO:0006351 EMBL:AJ630366 HOVERGEN:HBG005606 HOGENOM:HOG000260821
InterPro:IPR021780 Pfam:PF11825 ProteinModelPortal:Q5TJF7
SMR:Q5TJF7 STRING:Q5TJF7 Uniprot:Q5TJF7
Length = 533
Score = 166 (63.5 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K C V + RNRCQYCR++KCLA GM R++V+ R +R
Sbjct: 226 KGFFKRTIRKDLTYSC-RDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEER--QRG 282
Query: 62 RERSDSETGS 71
+++ G+
Sbjct: 283 KDKDGDGEGA 292
Score = 95 (38.5 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTR 232
+VE+AKR+P F L DDQ+IL++ G+ EL I S + D + + G++V R
Sbjct: 350 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHR 405
>UNIPROTKB|P28702 [details] [associations]
symbol:RXRB "Retinoic acid receptor RXR-beta" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IEA]
[GO:0004886 "9-cis retinoic acid receptor activity" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0055012
"ventricular cardiac muscle cell differentiation" evidence=IEA]
[GO:0060038 "cardiac muscle cell proliferation" evidence=IEA]
[GO:0071300 "cellular response to retinoic acid" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=NAS] [GO:0003713 "transcription coactivator
activity" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IDA] Reactome:REACT_71 InterPro:IPR000003
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430
Pathway_Interaction_DB:a6b1_a6b4_integrin_pathway GO:GO:0005654
GO:GO:0046872 eggNOG:NOG327099 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0071300 GO:GO:0045944 Pathway_Interaction_DB:rxr_vdr_pathway
GO:GO:0044212 GO:GO:0003713 GO:GO:0030375
Pathway_Interaction_DB:retinoic_acid_pathway DrugBank:DB00755
DrugBank:DB00459 Pathway_Interaction_DB:ar_tf_pathway GO:GO:0006367
EMBL:AL031228 GO:GO:0060038 EMBL:AL645940 EMBL:AL662824
EMBL:AL844527 EMBL:CR759733 EMBL:CR936877 HOVERGEN:HBG005606
DrugBank:DB00307 GO:GO:0055012 PDB:1UHL PDBsum:1UHL
DrugBank:DB00523 DrugBank:DB00926 DrugBank:DB00210 DrugBank:DB00799
HOGENOM:HOG000260821 OrthoDB:EOG4SJ5DV GO:GO:0004886 KO:K08525
EMBL:M84820 EMBL:X63522 EMBL:AF065396 EMBL:AF120161 EMBL:HQ709179
EMBL:AB209244 EMBL:CR354565 EMBL:BC001167 EMBL:X66424
IPI:IPI00426305 IPI:IPI00607575 PIR:S37781 RefSeq:NP_068811.1
UniGene:Hs.388034 PDB:1H9U PDBsum:1H9U ProteinModelPortal:P28702
SMR:P28702 IntAct:P28702 MINT:MINT-1365658 STRING:P28702
PhosphoSite:P28702 DMDM:1350911 PaxDb:P28702 PRIDE:P28702
DNASU:6257 Ensembl:ENST00000374680 Ensembl:ENST00000374685
Ensembl:ENST00000383217 Ensembl:ENST00000415157
Ensembl:ENST00000415909 Ensembl:ENST00000431820
Ensembl:ENST00000436753 GeneID:6257 KEGG:hsa:6257 UCSC:uc003odb.3
CTD:6257 GeneCards:GC06M033161 HGNC:HGNC:10478 HPA:CAB002003
MIM:180246 neXtProt:NX_P28702 PharmGKB:PA34891 PhylomeDB:P28702
BindingDB:P28702 ChEMBL:CHEMBL1870 ChiTaRS:RXRB
EvolutionaryTrace:P28702 GenomeRNAi:6257 NextBio:24299
ArrayExpress:P28702 Bgee:P28702 CleanEx:HS_RXRB
Genevestigator:P28702 GermOnline:ENSG00000204231 Uniprot:P28702
Length = 533
Score = 166 (63.5 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K C V + RNRCQYCR++KCLA GM R++V+ R +R
Sbjct: 226 KGFFKRTIRKDLTYSC-RDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEER--QRG 282
Query: 62 RERSDSETGS 71
+++ G+
Sbjct: 283 KDKDGDGEGA 292
Score = 95 (38.5 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTR 232
+VE+AKR+P F L DDQ+IL++ G+ EL I S + D + + G++V R
Sbjct: 350 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHR 405
>UNIPROTKB|F1PUF6 [details] [associations]
symbol:RXRB "Retinoic acid receptor RXR-beta" species:9615
"Canis lupus familiaris" [GO:0071300 "cellular response to retinoic
acid" evidence=IEA] [GO:0060038 "cardiac muscle cell proliferation"
evidence=IEA] [GO:0055012 "ventricular cardiac muscle cell
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004886
"9-cis retinoic acid receptor activity" evidence=IEA] [GO:0001893
"maternal placenta development" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0071300 GO:GO:0045944
GO:GO:0044212 GO:GO:0060038 GeneTree:ENSGT00690000101777
GO:GO:0055012 GO:GO:0004886 OMA:FLPERHA EMBL:AAEX03008237
Ensembl:ENSCAFT00000001418 NextBio:20856477 Uniprot:F1PUF6
Length = 536
Score = 166 (63.5 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 3 QGFFRRSIQKQIEYRCLRDGK-CLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRS 61
+GFF+R+I+K + Y C RD K C V + RNRCQYCR++KCLA GM R++V+ R +R
Sbjct: 225 KGFFKRTIRKDLTYSC-RDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEER--QRG 281
Query: 62 RERSDSETGS 71
+++ G+
Sbjct: 282 KDKDGDGEGA 291
Score = 95 (38.5 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTD--SSLTFSDGMYVTR 232
+VE+AKR+P F L DDQ+IL++ G+ EL I S + D + + G++V R
Sbjct: 349 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHR 404
>UNIPROTKB|P10827 [details] [associations]
symbol:THRA "Thyroid hormone receptor alpha" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0001502 "cartilage condensation" evidence=IEA] [GO:0001503
"ossification" evidence=IEA] [GO:0002153 "steroid receptor RNA
activator RNA binding" evidence=IEA] [GO:0002155 "regulation of
thyroid hormone mediated signaling pathway" evidence=IEA]
[GO:0007611 "learning or memory" evidence=IEA] [GO:0008016
"regulation of heart contraction" evidence=IEA] [GO:0008050 "female
courtship behavior" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0010831 "positive regulation of myotube
differentiation" evidence=IEA] [GO:0030218 "erythrocyte
differentiation" evidence=IEA] [GO:0030878 "thyroid gland
development" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0033032 "regulation of myeloid cell apoptotic process"
evidence=IEA] [GO:0042994 "cytoplasmic sequestering of
transcription factor" evidence=IEA] [GO:0045925 "positive
regulation of female receptivity" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0050994 "regulation of lipid catabolic
process" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IDA]
[GO:2000143 "negative regulation of DNA-dependent transcription,
initiation" evidence=IDA] [GO:0070324 "thyroid hormone binding"
evidence=IDA;IPI] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0004887 "thyroid hormone receptor activity" evidence=IDA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0017025 "TBP-class protein binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0009755 "hormone-mediated signaling pathway" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IDA] Reactome:REACT_71
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR001728 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005829 GO:GO:0005654 GO:GO:0046872
EMBL:CH471152 GO:GO:0009409 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0008016 Pathway_Interaction_DB:rxr_vdr_pathway
GO:GO:0007611 GO:GO:0044212 GO:GO:0030218 GO:GO:0009755
GO:GO:0070324 DrugBank:DB00451 DrugBank:DB00279 GO:GO:0001502
GO:GO:0006367 GO:GO:0001503 GO:GO:0031490 GO:GO:2000143
GO:GO:0050994 GO:GO:0004887 GO:GO:0042994 GO:GO:0017025
GO:GO:0010831 HOVERGEN:HBG005606 GO:GO:0030878 GO:GO:0002155
GO:GO:0017055 GO:GO:0045925 EMBL:M24900 EMBL:X55066 UniGene:Hs.724
GO:GO:0008050 GO:GO:0033032 CTD:7067 KO:K05547 EMBL:X55074
EMBL:X55073 EMBL:X55070 EMBL:X55071 EMBL:X55004 EMBL:X55069
EMBL:X55068 EMBL:X55005 EMBL:M24899 EMBL:J03239 EMBL:Y00479
EMBL:M24748 EMBL:AK290530 EMBL:BC000261 EMBL:BC002728 EMBL:BC035137
EMBL:AF522368 IPI:IPI00022991 IPI:IPI00219099 IPI:IPI00219100
IPI:IPI00219101 PIR:A30893 PIR:A40917 PIR:S06163
RefSeq:NP_001177847.1 RefSeq:NP_001177848.1 RefSeq:NP_003241.2
RefSeq:NP_955366.1 PDB:1NAV PDB:2H77 PDB:2H79 PDB:3HZF PDB:3ILZ
PDB:3JZB PDBsum:1NAV PDBsum:2H77 PDBsum:2H79 PDBsum:3HZF
PDBsum:3ILZ PDBsum:3JZB ProteinModelPortal:P10827 SMR:P10827
IntAct:P10827 STRING:P10827 PhosphoSite:P10827 DMDM:135705
PaxDb:P10827 PRIDE:P10827 DNASU:7067 Ensembl:ENST00000264637
Ensembl:ENST00000394121 Ensembl:ENST00000450525
Ensembl:ENST00000546243 Ensembl:ENST00000584985 GeneID:7067
KEGG:hsa:7067 UCSC:uc002htw.3 UCSC:uc002htx.3 GeneCards:GC17P038219
HGNC:HGNC:11796 HPA:CAB023349 HPA:HPA009654 MIM:190120 MIM:614450
neXtProt:NX_P10827 Orphanet:97927 PharmGKB:PA36507 eggNOG:NOG272726
HOGENOM:HOG000010313 InParanoid:P10827 OMA:DEEPEVC
OrthoDB:EOG4B2SX0 PhylomeDB:P10827 BindingDB:P10827
ChEMBL:CHEMBL1860 ChiTaRS:THRA EvolutionaryTrace:P10827
GenomeRNAi:7067 NextBio:27631 ArrayExpress:P10827 Bgee:P10827
CleanEx:HS_THRA Genevestigator:P10827 GermOnline:ENSG00000126351
GO:GO:0002153 Uniprot:P10827
Length = 490
Score = 158 (60.7 bits), Expect = 4.4e-19, Sum P(2) = 4.4e-19
Identities = 36/75 (48%), Positives = 47/75 (62%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYG--RVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSE 68
KR +RER E
Sbjct: 134 KRKLIEQNRERRRKE 148
Score = 115 (45.5 bits), Expect = 4.4e-19, Sum P(2) = 4.4e-19
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ +F +TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +L
Sbjct: 215 FSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTL 274
Query: 223 TFSDGMYVTRQQLE 236
T S M V R+QL+
Sbjct: 275 TLSGEMAVKREQLK 288
>MGI|MGI:98742 [details] [associations]
symbol:Thra "thyroid hormone receptor alpha" species:10090
"Mus musculus" [GO:0001071 "nucleic acid binding transcription
factor activity" evidence=ISO] [GO:0001502 "cartilage condensation"
evidence=IMP] [GO:0001503 "ossification" evidence=IMP] [GO:0002153
"steroid receptor RNA activator RNA binding" evidence=IDA]
[GO:0002155 "regulation of thyroid hormone mediated signaling
pathway" evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISO] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=ISO;IDA] [GO:0004879 "ligand-activated sequence-specific
DNA binding RNA polymerase II transcription factor activity"
evidence=IDA] [GO:0004887 "thyroid hormone receptor activity"
evidence=ISO;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005829 "cytosol" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0007611 "learning or memory" evidence=IMP]
[GO:0008016 "regulation of heart contraction" evidence=IMP]
[GO:0008050 "female courtship behavior" evidence=IMP] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0009409 "response to cold" evidence=IMP]
[GO:0009755 "hormone-mediated signaling pathway" evidence=ISO]
[GO:0009887 "organ morphogenesis" evidence=IMP] [GO:0010831
"positive regulation of myotube differentiation" evidence=IDA]
[GO:0017025 "TBP-class protein binding" evidence=ISO] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=ISO] [GO:0019904 "protein
domain specific binding" evidence=ISO] [GO:0030218 "erythrocyte
differentiation" evidence=IMP] [GO:0030522 "intracellular receptor
mediated signaling pathway" evidence=ISO;IDA;TAS] [GO:0030878
"thyroid gland development" evidence=IGI] [GO:0031490 "chromatin
DNA binding" evidence=IDA] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0033032 "regulation of myeloid cell apoptotic
process" evidence=IMP] [GO:0042803 "protein homodimerization
activity" evidence=ISO] [GO:0042994 "cytoplasmic sequestering of
transcription factor" evidence=IDA] [GO:0043401 "steroid hormone
mediated signaling pathway" evidence=IEA] [GO:0043433 "negative
regulation of sequence-specific DNA binding transcription factor
activity" evidence=ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=ISO] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0044213 "intronic transcription
regulatory region DNA binding" evidence=ISO] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO;IDA]
[GO:0045925 "positive regulation of female receptivity"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO;IDA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] [GO:0046983 "protein
dimerization activity" evidence=ISO] [GO:0050994 "regulation of
lipid catabolic process" evidence=IMP] [GO:0070324 "thyroid hormone
binding" evidence=ISO] [GO:2000143 "negative regulation of
DNA-dependent transcription, initiation" evidence=ISO]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR001728 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 MGI:MGI:98742 GO:GO:0005829 GO:GO:0005634
GO:GO:0005737 GO:GO:0045892 GO:GO:0032403 GO:GO:0046872
GO:GO:0009409 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0008016 GO:GO:0007611 EMBL:CH466556 GO:GO:0044212
GO:GO:0030218 GO:GO:0070324 GO:GO:0001502 GO:GO:0001503
GO:GO:0031490 GO:GO:2000143 GO:GO:0050994 GO:GO:0004887
GO:GO:0042994 EMBL:AL590963 GO:GO:0010831 HOVERGEN:HBG005606
GO:GO:0030878 GO:GO:0002155 GO:GO:0017055 GO:GO:0045925
GO:GO:0008050 GO:GO:0033032 GeneTree:ENSGT00680000099662 CTD:7067
KO:K05547 eggNOG:NOG272726 OMA:DEEPEVC OrthoDB:EOG4B2SX0
GO:GO:0002153 EMBL:X07750 EMBL:X07751 EMBL:X07752 EMBL:X51983
EMBL:AK078233 EMBL:BC046795 IPI:IPI00134812 IPI:IPI00229975
IPI:IPI00229976 IPI:IPI00955166 PIR:S14416 PIR:S14417 PIR:S14418
PIR:S14690 RefSeq:NP_835161.1 UniGene:Mm.265917 UniGene:Mm.442648
ProteinModelPortal:P63058 SMR:P63058 DIP:DIP-43752N
MINT:MINT-3374329 STRING:P63058 PhosphoSite:P63058 PRIDE:P63058
Ensembl:ENSMUST00000064187 Ensembl:ENSMUST00000103139
Ensembl:ENSMUST00000124072 GeneID:21833 KEGG:mmu:21833
UCSC:uc007lhe.1 UCSC:uc007lhf.1 UCSC:uc007lhg.1 InParanoid:Q80Y90
NextBio:301282 Bgee:P63058 CleanEx:MM_THRA Genevestigator:P63058
GermOnline:ENSMUSG00000058756 Uniprot:P63058
Length = 492
Score = 158 (60.7 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
Identities = 36/75 (48%), Positives = 47/75 (62%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYG--RVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSE 68
KR +RER E
Sbjct: 134 KRKLIEQNRERRRKE 148
Score = 115 (45.5 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ +F +TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +L
Sbjct: 215 FSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTL 274
Query: 223 TFSDGMYVTRQQLE 236
T S M V R+QL+
Sbjct: 275 TLSGEMAVKREQLK 288
>RGD|3857 [details] [associations]
symbol:Thra "thyroid hormone receptor alpha" species:10116 "Rattus
norvegicus" [GO:0001071 "nucleic acid binding transcription factor
activity" evidence=IDA] [GO:0001502 "cartilage condensation"
evidence=IEA;ISO] [GO:0001503 "ossification" evidence=IEA;ISO]
[GO:0001822 "kidney development" evidence=IEP] [GO:0001889 "liver
development" evidence=IEP] [GO:0002153 "steroid receptor RNA
activator RNA binding" evidence=IEA;ISO] [GO:0002155 "regulation of
thyroid hormone mediated signaling pathway" evidence=IEA;ISO]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISO] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=ISO;IDA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=ISO] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005829 "cytosol" evidence=IEA;ISO;IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006950 "response to stress"
evidence=IEP] [GO:0007420 "brain development" evidence=IEP]
[GO:0007611 "learning or memory" evidence=IEA;ISO] [GO:0008016
"regulation of heart contraction" evidence=IEA;ISO] [GO:0008050
"female courtship behavior" evidence=IEA;ISO] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA;ISO] [GO:0009755 "hormone-mediated signaling pathway"
evidence=ISO] [GO:0009887 "organ morphogenesis" evidence=ISO]
[GO:0010831 "positive regulation of myotube differentiation"
evidence=IEA;ISO] [GO:0017025 "TBP-class protein binding"
evidence=IEA;ISO] [GO:0017055 "negative regulation of RNA polymerase
II transcriptional preinitiation complex assembly" evidence=IEA;ISO]
[GO:0019904 "protein domain specific binding" evidence=IEA;ISO]
[GO:0030218 "erythrocyte differentiation" evidence=IEA;ISO]
[GO:0030324 "lung development" evidence=IEP] [GO:0030325 "adrenal
gland development" evidence=IEP] [GO:0030522 "intracellular receptor
mediated signaling pathway" evidence=ISO] [GO:0030878 "thyroid gland
development" evidence=IEA;ISO] [GO:0031490 "chromatin DNA binding"
evidence=IEA;ISO] [GO:0031667 "response to nutrient levels"
evidence=IEP] [GO:0032403 "protein complex binding" evidence=IEA;ISO]
[GO:0033032 "regulation of myeloid cell apoptotic process"
evidence=IEA;ISO] [GO:0042493 "response to drug" evidence=IEP]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0042994 "cytoplasmic sequestering of transcription factor"
evidence=IEA;ISO] [GO:0043433 "negative regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA;IDA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA;ISO] [GO:0044213 "intronic transcription
regulatory region DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO] [GO:0045925
"positive regulation of female receptivity" evidence=IEA;ISO]
[GO:0045944 "positive regulation of transcription from RNA polymerase
II promoter" evidence=IEA;ISO;IDA] [GO:0046982 "protein
heterodimerization activity" evidence=IDA] [GO:0046983 "protein
dimerization activity" evidence=IDA] [GO:0048565 "digestive tract
development" evidence=IEP] [GO:0048568 "embryonic organ development"
evidence=IEP] [GO:0050994 "regulation of lipid catabolic process"
evidence=IEA;ISO] [GO:0070324 "thyroid hormone binding"
evidence=IEA;ISO] [GO:2000143 "negative regulation of DNA-dependent
transcription, initiation" evidence=IEA;ISO] [GO:0003677 "DNA
binding" evidence=ISO] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 MGI:MGI:98742 GO:GO:0005829 GO:GO:0005634
GO:GO:0005737 GO:GO:0045892 GO:GO:0032403 GO:GO:0046872 GO:GO:0009409
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0008016
GO:GO:0007611 EMBL:CH466556 GO:GO:0044212 GO:GO:0030218 GO:GO:0070324
GO:GO:0001502 GO:GO:0001503 GO:GO:0031490 GO:GO:2000143 GO:GO:0050994
GO:GO:0004887 GO:GO:0042994 EMBL:AL590963 GO:GO:0010831
HOVERGEN:HBG005606 GO:GO:0030878 GO:GO:0002155 GO:GO:0017055
GO:GO:0045925 GO:GO:0008050 GO:GO:0033032
GeneTree:ENSGT00680000099662 CTD:7067 KO:K05547 eggNOG:NOG272726
OMA:DEEPEVC OrthoDB:EOG4B2SX0 GO:GO:0002153 EMBL:X07750 EMBL:X07751
EMBL:X07752 EMBL:X51983 EMBL:AK078233 EMBL:BC046795 IPI:IPI00134812
IPI:IPI00229975 IPI:IPI00229976 IPI:IPI00955166 PIR:S14416 PIR:S14417
PIR:S14418 PIR:S14690 RefSeq:NP_835161.1 UniGene:Mm.265917
UniGene:Mm.442648 ProteinModelPortal:P63058 SMR:P63058 DIP:DIP-43752N
MINT:MINT-3374329 STRING:P63058 PhosphoSite:P63058 PRIDE:P63058
Ensembl:ENSMUST00000064187 Ensembl:ENSMUST00000103139
Ensembl:ENSMUST00000124072 GeneID:21833 KEGG:mmu:21833
UCSC:uc007lhe.1 UCSC:uc007lhf.1 UCSC:uc007lhg.1 InParanoid:Q80Y90
NextBio:301282 Bgee:P63058 CleanEx:MM_THRA Genevestigator:P63058
GermOnline:ENSMUSG00000058756 Uniprot:P63058
Length = 492
Score = 158 (60.7 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
Identities = 36/75 (48%), Positives = 47/75 (62%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYG--RVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSE 68
KR +RER E
Sbjct: 134 KRKLIEQNRERRRKE 148
Score = 115 (45.5 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ +F +TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +L
Sbjct: 215 FSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTL 274
Query: 223 TFSDGMYVTRQQLE 236
T S M V R+QL+
Sbjct: 275 TLSGEMAVKREQLK 288
>UNIPROTKB|P63059 [details] [associations]
symbol:Thra "Thyroid hormone receptor alpha" species:10116
"Rattus norvegicus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:3857 GO:GO:0005829 GO:GO:0005634
GO:GO:0046872 GO:GO:0009409 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0008016 GO:GO:0007611 GO:GO:0044212
GO:GO:0030218 GO:GO:0070324 GO:GO:0001502 GO:GO:0001503
GO:GO:0031490 GO:GO:2000143 GO:GO:0050994 GO:GO:0004887
GO:GO:0042994 GO:GO:0010831 HOVERGEN:HBG005606 GO:GO:0030878
GO:GO:0002155 GO:GO:0017055 GO:GO:0045925 GO:GO:0008050
GO:GO:0033032 CTD:7067 KO:K05547 eggNOG:NOG272726 OrthoDB:EOG4B2SX0
GO:GO:0002153 EMBL:M31174 EMBL:M31177 EMBL:M18028 EMBL:X12744
IPI:IPI00231074 IPI:IPI00324673 PIR:A36752 PIR:I57696 PIR:I67429
PIR:S06410 PIR:S06907 PIR:S09178 RefSeq:NP_001017960.1
RefSeq:NP_112396.2 UniGene:Rn.11307 ProteinModelPortal:P63059
SMR:P63059 STRING:P63059 PhosphoSite:P63059 GeneID:81812
KEGG:rno:81812 InParanoid:P63059 BindingDB:P63059 ChEMBL:CHEMBL4823
NextBio:615701 Genevestigator:P63059 GermOnline:ENSRNOG00000009066
Uniprot:P63059
Length = 492
Score = 158 (60.7 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
Identities = 36/75 (48%), Positives = 47/75 (62%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYG--RVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSE 68
KR +RER E
Sbjct: 134 KRKLIEQNRERRRKE 148
Score = 115 (45.5 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ +F +TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +L
Sbjct: 215 FSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTL 274
Query: 223 TFSDGMYVTRQQLE 236
T S M V R+QL+
Sbjct: 275 TLSGEMAVKREQLK 288
>ZFIN|ZDB-GENE-040704-11 [details] [associations]
symbol:nr4a1 "nuclear receptor subfamily 4, group A,
member 1" species:7955 "Danio rerio" [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0043401
"steroid hormone mediated signaling pathway" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003070
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01284 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-040704-11
GO:GO:0005634 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0030522 EMBL:AY542372 UniGene:Dr.9243
ProteinModelPortal:I6LBI5 Uniprot:I6LBI5
Length = 580
Score = 183 (69.5 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 43/102 (42%), Positives = 63/102 (61%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R++QK +Y CL + C V + RNRCQ+CRF+KCLAVGM ++ VR + R R
Sbjct: 260 KGFFKRTVQKNAKYVCLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGR-R 318
Query: 63 ERSDSETGSTRVSTTGAEPPS---SLETAGPVQSLPSSTELD 101
R S+ + + S + + P + SL TA + S P+S LD
Sbjct: 319 GRLPSKPKAVQDSVSVSSPVNIIASLVTAH-IDSNPASANLD 359
Score = 78 (32.5 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---------GYVSRL 216
QQF +T S+ + ++A +PGF ++DQ +L++ F EL+I ++S
Sbjct: 380 QQFYDLLTGSMDVIRKWAGSIPGFSAFCKEDQELLLESAFVELFILRLAYRFIYAFMSNP 439
Query: 217 TTDSSLTFSDGMYVTRQQ 234
TD L F +G+ + R Q
Sbjct: 440 ETDK-LIFCNGVVLHRTQ 456
>UNIPROTKB|O97716 [details] [associations]
symbol:THRA "Thyroid hormone receptor alpha" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004887 "thyroid hormone receptor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887 HOVERGEN:HBG005606
CTD:7067 KO:K05547 eggNOG:NOG272726 HOGENOM:HOG000010313
OrthoDB:EOG4B2SX0 EMBL:AJ005798 EMBL:AJ005797 RefSeq:NP_999355.1
UniGene:Ssc.31357 ProteinModelPortal:O97716 SMR:O97716
STRING:O97716 GeneID:397387 KEGG:ssc:397387 Uniprot:O97716
Length = 506
Score = 158 (60.7 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
Identities = 36/75 (48%), Positives = 47/75 (62%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYG--RVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSE 68
KR +RER E
Sbjct: 134 KRKLIEQNRERRRKE 148
Score = 115 (45.5 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ +F +TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +L
Sbjct: 215 FSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTL 274
Query: 223 TFSDGMYVTRQQLE 236
T S M V R+QL+
Sbjct: 275 TLSGEMAVKREQLK 288
>UNIPROTKB|Q1RMT4 [details] [associations]
symbol:THRA "Thyroid hormone receptor, alpha
(Erythroblastic leukemia viral (V-erb-a) oncogene homolog, avian)"
species:9913 "Bos taurus" [GO:2000143 "negative regulation of
DNA-dependent transcription, initiation" evidence=IEA] [GO:0070324
"thyroid hormone binding" evidence=IEA] [GO:0050994 "regulation of
lipid catabolic process" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045925 "positive regulation of female
receptivity" evidence=IEA] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IEA] [GO:0042994 "cytoplasmic
sequestering of transcription factor" evidence=IEA] [GO:0033032
"regulation of myeloid cell apoptotic process" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IEA] [GO:0031490
"chromatin DNA binding" evidence=IEA] [GO:0030878 "thyroid gland
development" evidence=IEA] [GO:0030218 "erythrocyte
differentiation" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0017055 "negative regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0010831 "positive regulation of myotube differentiation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0008050 "female courtship behavior" evidence=IEA] [GO:0008016
"regulation of heart contraction" evidence=IEA] [GO:0007611
"learning or memory" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0002155
"regulation of thyroid hormone mediated signaling pathway"
evidence=IEA] [GO:0002153 "steroid receptor RNA activator RNA
binding" evidence=IEA] [GO:0001503 "ossification" evidence=IEA]
[GO:0001502 "cartilage condensation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004887 "thyroid hormone receptor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005829 GO:GO:0005634
GO:GO:0046872 GO:GO:0009409 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0008016 GO:GO:0007611 GO:GO:0044212
GO:GO:0030218 GO:GO:0070324 GO:GO:0001502 GO:GO:0001503
GO:GO:0031490 GO:GO:2000143 GO:GO:0050994 GO:GO:0004887
GO:GO:0042994 GO:GO:0010831 HOVERGEN:HBG005606 GO:GO:0030878
GO:GO:0002155 GO:GO:0017055 GO:GO:0045925 GO:GO:0008050
GO:GO:0033032 GeneTree:ENSGT00680000099662 CTD:7067 KO:K05547
eggNOG:NOG272726 HOGENOM:HOG000010313 OMA:DEEPEVC OrthoDB:EOG4B2SX0
GO:GO:0002153 EMBL:DAAA02049128 EMBL:BC114725 IPI:IPI00687166
RefSeq:NP_001039794.1 UniGene:Bt.21583 SMR:Q1RMT4 STRING:Q1RMT4
Ensembl:ENSBTAT00000014236 GeneID:532621 KEGG:bta:532621
InParanoid:Q1RMT4 NextBio:20875751 Uniprot:Q1RMT4
Length = 511
Score = 158 (60.7 bits), Expect = 5.1e-19, Sum P(2) = 5.1e-19
Identities = 36/75 (48%), Positives = 47/75 (62%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYG--RVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSE 68
KR +RER E
Sbjct: 134 KRKLIEQNRERRRKE 148
Score = 115 (45.5 bits), Expect = 5.1e-19, Sum P(2) = 5.1e-19
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ +F +TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +L
Sbjct: 215 FSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTL 274
Query: 223 TFSDGMYVTRQQLE 236
T S M V R+QL+
Sbjct: 275 TLSGEMAVKREQLK 288
>UNIPROTKB|E2QZW9 [details] [associations]
symbol:THRA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004887 "thyroid hormone receptor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887
GeneTree:ENSGT00680000099662 OMA:DEEPEVC EMBL:AAEX03006466
EMBL:AAEX03006467 UniGene:Cfa.3463 Ensembl:ENSCAFT00000025690
NextBio:20817106 Uniprot:E2QZW9
Length = 511
Score = 158 (60.7 bits), Expect = 5.1e-19, Sum P(2) = 5.1e-19
Identities = 36/75 (48%), Positives = 47/75 (62%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYG--RVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSE 68
KR +RER E
Sbjct: 134 KRKLIEQNRERRRKE 148
Score = 115 (45.5 bits), Expect = 5.1e-19, Sum P(2) = 5.1e-19
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ +F +TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +L
Sbjct: 215 FSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTL 274
Query: 223 TFSDGMYVTRQQLE 236
T S M V R+QL+
Sbjct: 275 TLSGEMAVKREQLK 288
>MGI|MGI:1352454 [details] [associations]
symbol:Nr4a1 "nuclear receptor subfamily 4, group A, member
1" species:10090 "Mus musculus" [GO:0001077 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IDA] [GO:0001938 "positive regulation of
endothelial cell proliferation" evidence=ISO] [GO:0002042 "cell
migration involved in sprouting angiogenesis" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005667 "transcription
factor complex" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IMP] [GO:0006917 "induction of apoptosis"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0010035 "response to inorganic substance" evidence=ISA]
[GO:0030522 "intracellular receptor mediated signaling pathway"
evidence=IEA] [GO:0035767 "endothelial cell chemotaxis"
evidence=ISO] [GO:0035914 "skeletal muscle cell differentiation"
evidence=IMP] [GO:0035924 "cellular response to vascular
endothelial growth factor stimulus" evidence=ISO] [GO:0042803
"protein homodimerization activity" evidence=IDA] [GO:0043154
"negative regulation of cysteine-type endopeptidase activity
involved in apoptotic process" evidence=IDA] [GO:0043401 "steroid
hormone mediated signaling pathway" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0044344 "cellular
response to fibroblast growth factor stimulus" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IDA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] [GO:0071310 "cellular
response to organic substance" evidence=IDA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003070
InterPro:IPR003071 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01284 PRINTS:PR01285 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 MGI:MGI:1352454 GO:GO:0043154
GO:GO:0042803 GO:GO:0006917 GO:GO:0044344 GO:GO:0046872
GO:GO:0001938 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0005667 GO:GO:0001077 GO:GO:0010035 GO:GO:0030522
GO:GO:0035914 GO:GO:0071310 GO:GO:0002042 GO:GO:0035924
GO:GO:0035767 eggNOG:NOG245120 CTD:3164 HOGENOM:HOG000230925
HOVERGEN:HBG052663 KO:K04465 OMA:KWAEKIP OrthoDB:EOG4VMFF7
EMBL:J04113 EMBL:X16995 EMBL:X60132 EMBL:BC004770 IPI:IPI00121733
PIR:S06953 RefSeq:NP_034574.1 UniGene:Mm.119
ProteinModelPortal:P12813 SMR:P12813 STRING:P12813
PhosphoSite:P12813 PRIDE:P12813 Ensembl:ENSMUST00000023779
GeneID:15370 KEGG:mmu:15370 InParanoid:P12813 NextBio:288006
Bgee:P12813 CleanEx:MM_NR4A1 Genevestigator:P12813
GermOnline:ENSMUSG00000023034 Uniprot:P12813
Length = 601
Score = 171 (65.3 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 37/93 (39%), Positives = 54/93 (58%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRY-------G 55
+GFF+R++QK +Y CL + C V + RNRCQ+CRF+KCLAVGM ++ VR G
Sbjct: 291 KGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 350
Query: 56 RVPKRSRERSDSETGSTRVSTTGAEPPSSLETA 88
R+P + ++ D+ + S A S TA
Sbjct: 351 RLPSKPKQPPDASPTNLLTSLIRAHLDSGPSTA 383
Score = 84 (34.6 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 166 QQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI---GYVSRLTTDSSL 222
QQF ++ S+ + ++A+++PGF +L DQ +L++ F EL+I Y S+ + L
Sbjct: 407 QQFYDLLSGSLDVIRKWAEKIPGFIELCPGDQDLLLESAFLELFILRLAYRSK-PGEGKL 465
Query: 223 TFSDGMYVTRQQ 234
F G+ + + Q
Sbjct: 466 IFCSGLVLHQLQ 477
>ZFIN|ZDB-GENE-990415-263 [details] [associations]
symbol:thraa "thyroid hormone receptor alpha a"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;IDA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0004887 "thyroid hormone receptor activity" evidence=IEA;IDA]
[GO:0009725 "response to hormone stimulus" evidence=IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000988 "protein
binding transcription factor activity" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR001728
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430
ZFIN:ZDB-GENE-990415-263 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0009725 GO:GO:0004887 GO:GO:0000988
EMBL:AL590145 GeneTree:ENSGT00680000099662 IPI:IPI00931420
ProteinModelPortal:F1Q735 Ensembl:ENSDART00000112817
ArrayExpress:F1Q735 Bgee:F1Q735 Uniprot:F1Q735
Length = 466
Score = 152 (58.6 bits), Expect = 6.7e-18, Sum P(2) = 6.7e-18
Identities = 30/62 (48%), Positives = 42/62 (67%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYG--RVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRF+KC++VGM+ D V RV
Sbjct: 72 KGFFRRTIQKNLHPSYSCKYDSCCIIDKITRNQCQLCRFRKCISVGMAMDLVLDDSKRVA 131
Query: 59 KR 60
KR
Sbjct: 132 KR 133
Score = 117 (46.2 bits), Expect = 6.7e-18, Sum P(2) = 6.7e-18
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELW-IGYVSRLTTDS-SL 222
+ +F +TP++ RVV+FAK++P F +L +DQ+IL+K E+ + R +S +L
Sbjct: 212 FSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETL 271
Query: 223 TFSDGMYVTRQQLE 236
T S M V+R+QL+
Sbjct: 272 TLSGEMAVSREQLK 285
>UNIPROTKB|Q66JK1 [details] [associations]
symbol:nr6a1 "Nuclear receptor subfamily 6 group A member
1" species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0009952 "anterior/posterior pattern specification"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0030917
"midbrain-hindbrain boundary development" evidence=ISS] [GO:0042803
"protein homodimerization activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] [GO:0048513 "organ
development" evidence=ISS] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 GO:GO:0005737 GO:GO:0042803 GO:GO:0016477
GO:GO:0022008 GO:GO:0046872 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0003700 GO:GO:0006351 GO:GO:0030917
GeneTree:ENSGT00670000097927 HSSP:P03372 eggNOG:NOG253308
HOGENOM:HOG000113847 HOVERGEN:HBG052664 KO:K08561 OrthoDB:EOG4SJ5DP
CTD:2649 OMA:HSCKTSV EMBL:AL630347 EMBL:CR760283 EMBL:BC080883
RefSeq:NP_001008005.1 UniGene:Str.11424 ProteinModelPortal:Q66JK1
SMR:Q66JK1 STRING:Q66JK1 Ensembl:ENSXETT00000018759 GeneID:493367
KEGG:xtr:493367 Xenbase:XB-GENE-487592 InParanoid:Q66JK1
Bgee:Q66JK1 Uniprot:Q66JK1
Length = 435
Score = 162 (62.1 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 29/56 (51%), Positives = 39/56 (69%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVP 58
+GFF+RSI + YRC RD C++ R RNRCQYCR KCL +GM+R ++R +P
Sbjct: 35 KGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKCLQMGMNRKAIREDGMP 90
Score = 73 (30.8 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYVT 231
R + + K++P FCDLS D L+ + EL + +S LTT S F D VT
Sbjct: 252 RQITWVKKLPFFCDLSIKDYTCLLSTTWQELIL--LSSLTTYSKQIFGDLADVT 303
>UNIPROTKB|F1P101 [details] [associations]
symbol:F1P101 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR001628
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00105 PRINTS:PR00047
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 GO:GO:0003700 GO:GO:0006351
GeneTree:ENSGT00700000104109 EMBL:AADN02066725 EMBL:AADN02066726
IPI:IPI00576452 Ensembl:ENSGALT00000001533 OMA:GSIRILE
Uniprot:F1P101
Length = 302
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 43/107 (40%), Positives = 61/107 (57%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS Q Y C R CL+ R NRNRCQ+CR +KCLA+GMSRD+V++GR+ K+ R
Sbjct: 31 KGFFRRSQQNNASYSCSRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQR 90
Query: 63 ER--SDSETGSTRVSTTGA-----EPPSSLETAGPVQSLPSSTELDT 102
+ ++ + R +G EP S + T L ++ T
Sbjct: 91 DSLYAEVQKHQQRQEQSGGPKDEPEPLSRIYTTSVSSGLSDLDDIST 137
>UNIPROTKB|P70033 [details] [associations]
symbol:nr6a1 "Nuclear receptor subfamily 6 group A member
1" species:8355 "Xenopus laevis" [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0009952
"anterior/posterior pattern specification" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] [GO:0030917 "midbrain-hindbrain
boundary development" evidence=IMP] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0048513 "organ
development" evidence=IMP] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 GO:GO:0005737 GO:GO:0042803 GO:GO:0016477
GO:GO:0022008 GO:GO:0046872 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0003700 GO:GO:0006351 GO:GO:0030917 HOVERGEN:HBG052664
KO:K08561 HSSP:P19793 CTD:2649 EMBL:U58683 EMBL:AY130967
RefSeq:NP_001084102.1 UniGene:Xl.37734 ProteinModelPortal:P70033
SMR:P70033 GeneID:399304 KEGG:xla:399304 Xenbase:XB-GENE-487596
Uniprot:P70033
Length = 435
Score = 162 (62.1 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 29/56 (51%), Positives = 39/56 (69%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVP 58
+GFF+RSI + YRC RD C++ R RNRCQYCR KCL +GM+R ++R +P
Sbjct: 35 KGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKCLQMGMNRKAIREDGMP 90
Score = 71 (30.1 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYVT 231
R + + K++P FCDLS D L+ + EL + +S +TT S F D VT
Sbjct: 252 RQITWVKKLPFFCDLSIKDYTCLLSTTWQELIL--LSSITTYSKQIFGDLTDVT 303
>RGD|3200 [details] [associations]
symbol:Nr2c1 "nuclear receptor subfamily 2, group C, member 1"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016605 "PML body" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0042826 "histone
deacetylase binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0048386 "positive regulation of retinoic
acid receptor signaling pathway" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 RGD:3200 GO:GO:0046872 GO:GO:0016605 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351 GO:GO:0000122
GO:GO:0048386 EMBL:CH473960 HSSP:P03372 eggNOG:NOG297520
GeneTree:ENSGT00700000104390 KO:K08543 CTD:7181 HOGENOM:HOG000013058
OrthoDB:EOG476JZT OMA:QNSNEMS EMBL:L26398 EMBL:BC061822
IPI:IPI00208150 RefSeq:NP_665723.1 UniGene:Rn.79894
ProteinModelPortal:Q8VIJ4 SMR:Q8VIJ4 STRING:Q8VIJ4 PhosphoSite:Q8VIJ4
PRIDE:Q8VIJ4 Ensembl:ENSRNOT00000009578 GeneID:252924 KEGG:rno:252924
UCSC:RGD:3200 InParanoid:Q8VIJ4 NextBio:624089 ArrayExpress:Q8VIJ4
Genevestigator:Q8VIJ4 Uniprot:Q8VIJ4
Length = 590
Score = 175 (66.7 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 33/71 (46%), Positives = 49/71 (69%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVP-KRS 61
+GFF+RSI+K + Y C C++ + +RNRCQYCR ++C+A GM +DSV+ R P + S
Sbjct: 122 KGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQDSVQCERKPIEVS 181
Query: 62 RERSDSETGST 72
RE+S + ST
Sbjct: 182 REKSSNCAAST 192
Score = 42 (19.8 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELW 209
+ +A +P F L Q++ + L+K + EL+
Sbjct: 392 MHWALSIPSFQALGQENSISLVKAYWNELF 421
Score = 36 (17.7 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 66 DSETGSTRVSTTGAEPPSSLETAGPVQS 93
+S GST + A PS +E GP+ S
Sbjct: 333 ESMEGSTHLI---AGEPSCMEREGPLLS 357
>ZFIN|ZDB-GENE-040426-1438 [details] [associations]
symbol:nr2f1b "nuclear receptor subfamily 2, group
F, member 1b" species:7955 "Danio rerio" [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003068 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01282 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-040426-1438 GO:GO:0005634
GO:GO:0046872 eggNOG:NOG327099 GeneTree:ENSGT00670000097509
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
HOGENOM:HOG000260820 HOVERGEN:HBG005606 OrthoDB:EOG4MGS7H
EMBL:BC056748 EMBL:BC065651 IPI:IPI00482303 IPI:IPI00923764
RefSeq:NP_956886.1 UniGene:Dr.86046 HSSP:P19793
ProteinModelPortal:Q6PH18 SMR:Q6PH18 Ensembl:ENSDART00000027242
GeneID:393564 KEGG:dre:393564 CTD:393564 InParanoid:Q6PH18
OMA:MENIRIF NextBio:20814585 ArrayExpress:Q6PH18 Bgee:Q6PH18
Uniprot:Q6PH18
Length = 389
Score = 162 (62.1 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 27/56 (48%), Positives = 41/56 (73%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVP 58
+ FF+RS+++ + Y C + C V + +RN+CQYCR KKCL VGM R++V+ GR+P
Sbjct: 75 KSFFKRSVRRNLSYTCRANRNCPVDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMP 130
Score = 62 (26.9 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VE+A+ +P F DL DQ+ L+++ + EL++
Sbjct: 199 VEWARNIPFFPDLQITDQVSLLRLTWSELFV 229
>UNIPROTKB|E2QW41 [details] [associations]
symbol:NR2F2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060849 "regulation of transcription involved
in lymphatic endothelial cell fate commitment" evidence=IEA]
[GO:0060707 "trophoblast giant cell differentiation" evidence=IEA]
[GO:0060674 "placenta blood vessel development" evidence=IEA]
[GO:0060173 "limb development" evidence=IEA] [GO:0048514 "blood
vessel morphogenesis" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045736 "negative regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0010596 "negative regulation of
endothelial cell migration" evidence=IEA] [GO:0009956 "radial
pattern formation" evidence=IEA] [GO:0009952 "anterior/posterior
pattern specification" evidence=IEA] [GO:0009566 "fertilization"
evidence=IEA] [GO:0007519 "skeletal muscle tissue development"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0001972
"retinoic acid binding" evidence=IEA] [GO:0001937 "negative
regulation of endothelial cell proliferation" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IEA]
[GO:0001764 "neuron migration" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003068 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01282 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GeneTree:ENSGT00670000097509 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0030522 EMBL:AAEX03002267
Ensembl:ENSCAFT00000012887 NextBio:20854275 Uniprot:E2QW41
Length = 394
Score = 161 (61.7 bits), Expect = 9.7e-16, Sum P(2) = 9.7e-16
Identities = 26/56 (46%), Positives = 41/56 (73%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVP 58
+ FF+RS+++ + Y C + C + + +RN+CQYCR KKCL VGM R++V+ GR+P
Sbjct: 100 KSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMP 155
Score = 63 (27.2 bits), Expect = 9.7e-16, Sum P(2) = 9.7e-16
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VE+A+ +P F DL DQ+ L+++ + EL++
Sbjct: 224 VEWARNIPFFPDLQITDQVALLRLTWSELFV 254
>FB|FBgn0003964 [details] [associations]
symbol:usp "ultraspiracle" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=ISS;NAS;IDA]
[GO:0004884 "ecdysteroid hormone receptor activity"
evidence=NAS;IDA;IPI] [GO:0008232 "activator ecdysone receptor
complex" evidence=IDA] [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IDA] [GO:0046982 "protein
heterodimerization activity" evidence=IDA;IPI] [GO:0008230
"ecdysone receptor holocomplex" evidence=TAS;IPI] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IPI] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=ISS;NAS] [GO:0003677 "DNA binding" evidence=IDA;NAS]
[GO:0007552 "metamorphosis" evidence=NAS] [GO:0045596 "negative
regulation of cell differentiation" evidence=TAS] [GO:0005700
"polytene chromosome" evidence=NAS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0016322 "neuron remodeling" evidence=IMP] [GO:0035072
"ecdysone-mediated induction of salivary gland cell autophagic cell
death" evidence=NAS] [GO:0008289 "lipid binding" evidence=IDA]
[GO:0040034 "regulation of development, heterochronic"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005500 "juvenile hormone binding" evidence=TAS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0043401 "steroid hormone mediated signaling pathway"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0048813 "dendrite morphogenesis"
evidence=IMP;NAS] [GO:0048666 "neuron development" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0030425
"dendrite" evidence=IMP] [GO:0042803 "protein homodimerization
activity" evidence=IDA] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0035075 "response to ecdysone" evidence=IMP]
InterPro:IPR000003 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0045892 GO:GO:0045893 GO:GO:0042803
GO:GO:0046872 GO:GO:0030425 EMBL:AE014298 eggNOG:NOG327099
GO:GO:0043565 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0016322 GO:GO:0007298 GO:GO:0048813
GO:GO:0007517 EMBL:AL031765 GO:GO:0007281 GO:GO:0046982
GO:GO:0040034 GO:GO:0005700 GO:GO:0035072 PDB:1R0O PDB:2HAN
PDBsum:1R0O PDBsum:2HAN GO:GO:0004884 GO:GO:0045596
GeneTree:ENSGT00690000101777 EMBL:X53417 EMBL:X52591 EMBL:AY069393
EMBL:X53379 PIR:A35872 PIR:T13737 RefSeq:NP_476781.1 UniGene:Dm.25
PDB:1HG4 PDBsum:1HG4 ProteinModelPortal:P20153 SMR:P20153
DIP:DIP-645N IntAct:P20153 MINT:MINT-824030 STRING:P20153
PaxDb:P20153 PRIDE:P20153 EnsemblMetazoa:FBtr0070346
EnsemblMetazoa:FBtr0333803 GeneID:31165 KEGG:dme:Dmel_CG4380
CTD:31165 FlyBase:FBgn0003964 InParanoid:P20153 KO:K14030
OMA:MGDSRDS OrthoDB:EOG45HQD3 PhylomeDB:P20153
EvolutionaryTrace:P20153 GenomeRNAi:31165 NextBio:772247
Bgee:P20153 GermOnline:CG4380 GO:GO:0008230 GO:GO:0005500
Uniprot:P20153
Length = 508
Score = 160 (61.4 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFF+R+++K + Y C + C++ + RNRCQYCR++KCL GM R++V+ +R R
Sbjct: 125 KGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAVQ----EERQR 180
Query: 63 ERSDSETGSTRVSTTGAEPPSSL 85
++ G S G+ P S+
Sbjct: 181 GARNA-AGRLSASGGGSSGPGSV 202
Score = 77 (32.2 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 172 VTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVS 214
V + ++VE+A+ +P F + DDQ+IL+K + EL I V+
Sbjct: 285 VNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVA 327
>UNIPROTKB|F1RXC4 [details] [associations]
symbol:THRA "Thyroid hormone receptor alpha" species:9823
"Sus scrofa" [GO:2000143 "negative regulation of DNA-dependent
transcription, initiation" evidence=IEA] [GO:0070324 "thyroid
hormone binding" evidence=IEA] [GO:0050994 "regulation of lipid
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045925 "positive regulation of female receptivity"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0042994 "cytoplasmic sequestering of
transcription factor" evidence=IEA] [GO:0033032 "regulation of
myeloid cell apoptotic process" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0030878 "thyroid gland development" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0019904
"protein domain specific binding" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0017025
"TBP-class protein binding" evidence=IEA] [GO:0010831 "positive
regulation of myotube differentiation" evidence=IEA] [GO:0009409
"response to cold" evidence=IEA] [GO:0008050 "female courtship
behavior" evidence=IEA] [GO:0008016 "regulation of heart
contraction" evidence=IEA] [GO:0007611 "learning or memory"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0002155 "regulation of thyroid hormone
mediated signaling pathway" evidence=IEA] [GO:0002153 "steroid
receptor RNA activator RNA binding" evidence=IEA] [GO:0001503
"ossification" evidence=IEA] [GO:0001502 "cartilage condensation"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004887 "thyroid hormone receptor activity" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR001728
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 GO:GO:0005829 GO:GO:0005634 GO:GO:0046872
GO:GO:0009409 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0008016 GO:GO:0007611 GO:GO:0044212 GO:GO:0030218
GO:GO:0070324 GO:GO:0001502 GO:GO:0001503 GO:GO:0031490
GO:GO:2000143 GO:GO:0050994 GO:GO:0004887 GO:GO:0042994
GO:GO:0010831 GO:GO:0030878 GO:GO:0002155 GO:GO:0017055
GO:GO:0045925 GO:GO:0008050 GO:GO:0033032
GeneTree:ENSGT00680000099662 GO:GO:0002153 EMBL:FP015991
Ensembl:ENSSSCT00000019032 OMA:SEEREVQ Uniprot:F1RXC4
Length = 505
Score = 158 (60.7 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 36/75 (48%), Positives = 47/75 (62%)
Query: 3 QGFFRRSIQKQIE--YRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYG--RVP 58
+GFFRR+IQK + Y C D C++ ++ RN+CQ CRFKKC+AVGM+ D V RV
Sbjct: 74 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 133
Query: 59 KR-----SRERSDSE 68
KR +RER E
Sbjct: 134 KRKLIEQNRERRRKE 148
Score = 83 (34.3 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 13/38 (34%), Positives = 28/38 (73%)
Query: 165 WQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIK 202
+ +F +TP++ RVV+FAK++P F +++Q +++I+
Sbjct: 215 FSEFTKIITPAITRVVDFAKKLPMFSEVTQSQLVLMIR 252
>UNIPROTKB|F1NVM8 [details] [associations]
symbol:NR6A1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0007276 "gamete
generation" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700
GO:GO:0006351 GO:GO:0005667 GO:GO:0000122
GeneTree:ENSGT00670000097927 OMA:HSCKTSV EMBL:AADN02026331
EMBL:AADN02026332 IPI:IPI00598740 Ensembl:ENSGALT00000001607
Uniprot:F1NVM8
Length = 435
Score = 162 (62.1 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 29/56 (51%), Positives = 39/56 (69%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVP 58
+GFF+RSI + YRC RD C++ R RNRCQYCR KCL +GM+R ++R +P
Sbjct: 35 KGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKCLQMGMNRKAIREDGMP 90
Score = 63 (27.2 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYVT 231
R + + K++P FC+LS D L+ + EL + +S LT S F D VT
Sbjct: 252 RQIAWIKKLPFFCELSIKDYTCLLSSTWQELIL--LSSLTVYSKQIFGDLADVT 303
>UNIPROTKB|Q90733 [details] [associations]
symbol:NR2F2 "COUP transcription factor 2" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030522 "intracellular
receptor mediated signaling pathway" evidence=ISS] [GO:0001972
"retinoic acid binding" evidence=ISS] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003068
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01282 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0045893 GO:GO:0046872 eggNOG:NOG327099 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 HOGENOM:HOG000260820
HOVERGEN:HBG005606 OrthoDB:EOG4MGS7H CTD:7026 KO:K08548
GO:GO:0001972 EMBL:U00697 IPI:IPI00598209 PIR:I50689
RefSeq:NP_989752.1 UniGene:Gga.4445 ProteinModelPortal:Q90733
SMR:Q90733 STRING:Q90733 GeneID:386585 KEGG:gga:386585
InParanoid:Q90733 NextBio:20813947 Uniprot:Q90733
Length = 410
Score = 161 (61.7 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 26/56 (46%), Positives = 41/56 (73%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVP 58
+ FF+RS+++ + Y C + C + + +RN+CQYCR KKCL VGM R++V+ GR+P
Sbjct: 96 KSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMP 151
Score = 63 (27.2 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VE+A+ +P F DL DQ+ L+++ + EL++
Sbjct: 220 VEWARNIPFFPDLQITDQVALLRLTWSELFV 250
>UNIPROTKB|Q9TTR7 [details] [associations]
symbol:NR2F2 "COUP transcription factor 2" species:9913
"Bos taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=ISS] [GO:0001972 "retinoic acid binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0060849
"regulation of transcription involved in lymphatic endothelial cell
fate commitment" evidence=IEA] [GO:0060707 "trophoblast giant cell
differentiation" evidence=IEA] [GO:0060674 "placenta blood vessel
development" evidence=IEA] [GO:0060173 "limb development"
evidence=IEA] [GO:0048514 "blood vessel morphogenesis"
evidence=IEA] [GO:0045736 "negative regulation of cyclin-dependent
protein serine/threonine kinase activity" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0010596 "negative regulation of
endothelial cell migration" evidence=IEA] [GO:0009956 "radial
pattern formation" evidence=IEA] [GO:0009952 "anterior/posterior
pattern specification" evidence=IEA] [GO:0009566 "fertilization"
evidence=IEA] [GO:0007519 "skeletal muscle tissue development"
evidence=IEA] [GO:0001937 "negative regulation of endothelial cell
proliferation" evidence=IEA] [GO:0001893 "maternal placenta
development" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003068 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01282 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0001764
GO:GO:0045893 GO:GO:0009952 GO:GO:0046872 eggNOG:NOG327099
GeneTree:ENSGT00670000097509 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0048514 GO:GO:0030900 GO:GO:0000122
GO:GO:0001937 GO:GO:0060173 GO:GO:0045736 GO:GO:0010596
GO:GO:0007519 HOGENOM:HOG000260820 HOVERGEN:HBG005606
OrthoDB:EOG4MGS7H EMBL:AJ249441 EMBL:BC123677 IPI:IPI00695873
PIR:JH0787 RefSeq:NP_776827.1 UniGene:Bt.53763
ProteinModelPortal:Q9TTR7 SMR:Q9TTR7 STRING:Q9TTR7
Ensembl:ENSBTAT00000023969 GeneID:281945 KEGG:bta:281945 CTD:7026
InParanoid:Q9TTR7 KO:K08548 OMA:GPPNNTQ NextBio:20805822
ArrayExpress:Q9TTR7 GO:GO:0001972 GO:GO:0009956 GO:GO:0060849
Uniprot:Q9TTR7
Length = 414
Score = 161 (61.7 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 26/56 (46%), Positives = 41/56 (73%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVP 58
+ FF+RS+++ + Y C + C + + +RN+CQYCR KKCL VGM R++V+ GR+P
Sbjct: 100 KSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMP 155
Score = 63 (27.2 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VE+A+ +P F DL DQ+ L+++ + EL++
Sbjct: 224 VEWARNIPFFPDLQITDQVALLRLTWSELFV 254
>UNIPROTKB|P24468 [details] [associations]
symbol:NR2F2 "COUP transcription factor 2" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0001764 "neuron migration" evidence=IEA] [GO:0001893 "maternal
placenta development" evidence=IEA] [GO:0007519 "skeletal muscle
tissue development" evidence=IEA] [GO:0009566 "fertilization"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0009956 "radial pattern formation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0032355 "response to estradiol stimulus" evidence=IEA]
[GO:0048514 "blood vessel morphogenesis" evidence=IEA] [GO:0060173
"limb development" evidence=IEA] [GO:0060674 "placenta blood vessel
development" evidence=IEA] [GO:0060707 "trophoblast giant cell
differentiation" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IPI] [GO:0001972 "retinoic acid
binding" evidence=IDA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IC;IDA] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003714 "transcription corepressor
activity" evidence=TAS] [GO:0006629 "lipid metabolic process"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0007165 "signal
transduction" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045736 "negative regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=IDA] [GO:0010596
"negative regulation of endothelial cell migration" evidence=IMP]
[GO:0001937 "negative regulation of endothelial cell proliferation"
evidence=IMP] [GO:0060849 "regulation of transcription involved in
lymphatic endothelial cell fate commitment" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0030522 "intracellular receptor mediated
signaling pathway" evidence=IDA;TAS] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003068
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01282 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0003714 GO:GO:0001764
Pathway_Interaction_DB:telomerasepathway GO:GO:0045893
GO:GO:0032355 GO:GO:0009952 GO:GO:0046872 eggNOG:NOG327099
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
Pathway_Interaction_DB:hnf3apathway GO:GO:0048514 GO:GO:0006629
GO:GO:0030900 GO:GO:0000122 GO:GO:0001937 EMBL:CH471101
GO:GO:0060173 GO:GO:0045736 GO:GO:0010596 GO:GO:0007519
HOGENOM:HOG000260820 HOVERGEN:HBG005606 OrthoDB:EOG4MGS7H
UniGene:Hs.519445 CTD:7026 KO:K08548 OMA:GPPNNTQ GO:GO:0001972
GO:GO:0009956 GO:GO:0060849 EMBL:M64497 EMBL:U60477 EMBL:AB307711
EMBL:FM208183 EMBL:AK298824 EMBL:AK301595 EMBL:AK316086
EMBL:HQ692849 EMBL:HQ692850 EMBL:AC016251 EMBL:BC014664
EMBL:BC042897 EMBL:BC106083 EMBL:M62760 IPI:IPI00028611
IPI:IPI00789037 PIR:A37133 RefSeq:NP_001138627.1
RefSeq:NP_001138628.1 RefSeq:NP_001138629.1 RefSeq:NP_066285.1
UniGene:Hs.347991 PDB:3CJW PDBsum:3CJW ProteinModelPortal:P24468
SMR:P24468 DIP:DIP-29713N IntAct:P24468 MINT:MINT-1183332
STRING:P24468 PhosphoSite:P24468 DMDM:114203 PRIDE:P24468
Ensembl:ENST00000394166 Ensembl:ENST00000394171
Ensembl:ENST00000421109 Ensembl:ENST00000453270 GeneID:7026
KEGG:hsa:7026 UCSC:uc010uri.2 GeneCards:GC15P096869 HGNC:HGNC:7976
MIM:107773 neXtProt:NX_P24468 PharmGKB:PA31759 InParanoid:P24468
PhylomeDB:P24468 ChEMBL:CHEMBL1961790 EvolutionaryTrace:P24468
GenomeRNAi:7026 NextBio:27451 ArrayExpress:P24468 Bgee:P24468
CleanEx:HS_NR2F2 Genevestigator:P24468 GermOnline:ENSG00000185551
Uniprot:P24468
Length = 414
Score = 161 (61.7 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 26/56 (46%), Positives = 41/56 (73%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVP 58
+ FF+RS+++ + Y C + C + + +RN+CQYCR KKCL VGM R++V+ GR+P
Sbjct: 100 KSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMP 155
Score = 63 (27.2 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VE+A+ +P F DL DQ+ L+++ + EL++
Sbjct: 224 VEWARNIPFFPDLQITDQVALLRLTWSELFV 254
>UNIPROTKB|F1SCJ6 [details] [associations]
symbol:NR2F2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060849 "regulation of transcription involved in
lymphatic endothelial cell fate commitment" evidence=IEA]
[GO:0060707 "trophoblast giant cell differentiation" evidence=IEA]
[GO:0060674 "placenta blood vessel development" evidence=IEA]
[GO:0060173 "limb development" evidence=IEA] [GO:0048514 "blood
vessel morphogenesis" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045736 "negative regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0010596 "negative regulation of
endothelial cell migration" evidence=IEA] [GO:0009956 "radial
pattern formation" evidence=IEA] [GO:0009952 "anterior/posterior
pattern specification" evidence=IEA] [GO:0009566 "fertilization"
evidence=IEA] [GO:0007519 "skeletal muscle tissue development"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0001972
"retinoic acid binding" evidence=IEA] [GO:0001937 "negative
regulation of endothelial cell proliferation" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IEA]
[GO:0001764 "neuron migration" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003068 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01282 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0001764 GO:GO:0045893
GO:GO:0009952 GO:GO:0046872 GeneTree:ENSGT00670000097509
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0048514
GO:GO:0030900 GO:GO:0000122 GO:GO:0001937 GO:GO:0060173
GO:GO:0045736 GO:GO:0010596 GO:GO:0007519 CTD:7026 KO:K08548
OMA:GPPNNTQ GO:GO:0001972 GO:GO:0009956 GO:GO:0060849 EMBL:CU407120
RefSeq:NP_001177181.1 UniGene:Ssc.8676 GeneID:100153983
KEGG:ssc:100153983 Ensembl:ENSSSCT00000002511 Uniprot:F1SCJ6
Length = 414
Score = 161 (61.7 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 26/56 (46%), Positives = 41/56 (73%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVP 58
+ FF+RS+++ + Y C + C + + +RN+CQYCR KKCL VGM R++V+ GR+P
Sbjct: 100 KSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMP 155
Score = 63 (27.2 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VE+A+ +P F DL DQ+ L+++ + EL++
Sbjct: 224 VEWARNIPFFPDLQITDQVALLRLTWSELFV 254
>MGI|MGI:1352452 [details] [associations]
symbol:Nr2f2 "nuclear receptor subfamily 2, group F, member
2" species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IDA]
[GO:0001701 "in utero embryonic development" evidence=IMP]
[GO:0001764 "neuron migration" evidence=IDA] [GO:0001893 "maternal
placenta development" evidence=IMP] [GO:0001937 "negative
regulation of endothelial cell proliferation" evidence=ISO]
[GO:0001972 "retinoic acid binding" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0007519 "skeletal muscle tissue development" evidence=IMP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009566
"fertilization" evidence=IMP] [GO:0009952 "anterior/posterior
pattern specification" evidence=IMP] [GO:0009956 "radial pattern
formation" evidence=IMP] [GO:0010596 "negative regulation of
endothelial cell migration" evidence=ISO] [GO:0030522
"intracellular receptor mediated signaling pathway" evidence=ISO]
[GO:0030900 "forebrain development" evidence=IDA] [GO:0042803
"protein homodimerization activity" evidence=ISO] [GO:0043401
"steroid hormone mediated signaling pathway" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=ISO;IDA]
[GO:0045736 "negative regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=ISO] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048514 "blood vessel morphogenesis" evidence=IMP] [GO:0060173
"limb development" evidence=IMP] [GO:0060674 "placenta blood vessel
development" evidence=IMP] [GO:0060707 "trophoblast giant cell
differentiation" evidence=IMP] [GO:0060849 "regulation of
transcription involved in lymphatic endothelial cell fate
commitment" evidence=ISO] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003068 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01282 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 MGI:MGI:1352452 GO:GO:0005634
GO:GO:0001764 GO:GO:0045893 GO:GO:0032355 GO:GO:0009952
GO:GO:0046872 eggNOG:NOG327099 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0048514 GO:GO:0030900 GO:GO:0009566
GO:GO:0000122 GO:GO:0001937 GO:GO:0001893 GO:GO:0060173
GO:GO:0045736 GO:GO:0010596 GO:GO:0007519 HOGENOM:HOG000260820
HOVERGEN:HBG005606 OrthoDB:EOG4MGS7H CTD:7026 KO:K08548 OMA:GPPNNTQ
GO:GO:0001972 GO:GO:0009956 GO:GO:0060849 EMBL:X76653 EMBL:U07635
EMBL:BC042484 IPI:IPI00117234 RefSeq:NP_033827.2 UniGene:Mm.158143
ProteinModelPortal:P43135 SMR:P43135 STRING:P43135
PhosphoSite:P43135 PaxDb:P43135 PRIDE:P43135
Ensembl:ENSMUST00000032768 GeneID:11819 KEGG:mmu:11819
InParanoid:P43135 NextBio:279711 Bgee:P43135 CleanEx:MM_NR2F2
Genevestigator:P43135 GermOnline:ENSMUSG00000030551 GO:GO:0001945
GO:GO:0060674 GO:GO:0060707 Uniprot:P43135
Length = 414
Score = 161 (61.7 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 26/56 (46%), Positives = 41/56 (73%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVP 58
+ FF+RS+++ + Y C + C + + +RN+CQYCR KKCL VGM R++V+ GR+P
Sbjct: 100 KSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMP 155
Score = 63 (27.2 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VE+A+ +P F DL DQ+ L+++ + EL++
Sbjct: 224 VEWARNIPFFPDLQITDQVALLRLTWSELFV 254
>RGD|69305 [details] [associations]
symbol:Nr2f2 "nuclear receptor subfamily 2, group F, member 2"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0001701 "in utero embryonic development" evidence=ISO]
[GO:0001764 "neuron migration" evidence=IEA;ISO] [GO:0001893
"maternal placenta development" evidence=IEA;ISO] [GO:0001937
"negative regulation of endothelial cell proliferation"
evidence=IEA;ISO] [GO:0001972 "retinoic acid binding"
evidence=ISO;ISS] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISO] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription factor
activity" evidence=IEA;ISO;ISS] [GO:0005634 "nucleus"
evidence=IEA;ISO;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0007519 "skeletal muscle tissue development" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009566
"fertilization" evidence=IEA;ISO] [GO:0009952 "anterior/posterior
pattern specification" evidence=IEA;ISO] [GO:0009956 "radial pattern
formation" evidence=IEA;ISO] [GO:0010596 "negative regulation of
endothelial cell migration" evidence=IEA;ISO] [GO:0030522
"intracellular receptor mediated signaling pathway" evidence=ISO]
[GO:0030900 "forebrain development" evidence=IEA;ISO] [GO:0032355
"response to estradiol stimulus" evidence=IEP] [GO:0042803 "protein
homodimerization activity" evidence=IEA;ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO;IDA] [GO:0045736
"negative regulation of cyclin-dependent protein serine/threonine
kinase activity" evidence=IEA;ISO] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO;ISS]
[GO:0048514 "blood vessel morphogenesis" evidence=IEA;ISO]
[GO:0060173 "limb development" evidence=IEA;ISO] [GO:0060674
"placenta blood vessel development" evidence=IEA;ISO] [GO:0060707
"trophoblast giant cell differentiation" evidence=IEA;ISO]
[GO:0060849 "regulation of transcription involved in lymphatic
endothelial cell fate commitment" evidence=IEA;ISO]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003068 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01282 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 RGD:69305 GO:GO:0005634 GO:GO:0001764 GO:GO:0045893
GO:GO:0032355 GO:GO:0009952 GO:GO:0046872 eggNOG:NOG327099
GeneTree:ENSGT00670000097509 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0048514 GO:GO:0030900 GO:GO:0000122
GO:GO:0001937 GO:GO:0060173 GO:GO:0045736 GO:GO:0010596
GO:GO:0007519 HOGENOM:HOG000260820 HOVERGEN:HBG005606 CTD:7026
KO:K08548 OMA:GPPNNTQ GO:GO:0001972 GO:GO:0009956 GO:GO:0060849
EMBL:AF003944 IPI:IPI00192619 RefSeq:NP_542956.1 UniGene:Rn.17815
ProteinModelPortal:O09018 SMR:O09018 STRING:O09018
PhosphoSite:O09018 Ensembl:ENSRNOT00000014152 GeneID:113984
KEGG:rno:113984 UCSC:RGD:69305 InParanoid:O09018 NextBio:618125
ArrayExpress:O09018 Genevestigator:O09018
GermOnline:ENSRNOG00000010308 Uniprot:O09018
Length = 414
Score = 161 (61.7 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 26/56 (46%), Positives = 41/56 (73%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVP 58
+ FF+RS+++ + Y C + C + + +RN+CQYCR KKCL VGM R++V+ GR+P
Sbjct: 100 KSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMP 155
Score = 63 (27.2 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VE+A+ +P F DL DQ+ L+++ + EL++
Sbjct: 224 VEWARNIPFFPDLQITDQVALLRLTWSELFV 254
>UNIPROTKB|O09018 [details] [associations]
symbol:Nr2f2 "COUP transcription factor 2" species:10116
"Rattus norvegicus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003068 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01282 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:69305 GO:GO:0005634 GO:GO:0001764
GO:GO:0045893 GO:GO:0032355 GO:GO:0009952 GO:GO:0046872
eggNOG:NOG327099 GeneTree:ENSGT00670000097509 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0048514 GO:GO:0030900
GO:GO:0000122 GO:GO:0001937 GO:GO:0060173 GO:GO:0045736
GO:GO:0010596 GO:GO:0007519 HOGENOM:HOG000260820 HOVERGEN:HBG005606
CTD:7026 KO:K08548 OMA:GPPNNTQ GO:GO:0001972 GO:GO:0009956
GO:GO:0060849 EMBL:AF003944 IPI:IPI00192619 RefSeq:NP_542956.1
UniGene:Rn.17815 ProteinModelPortal:O09018 SMR:O09018 STRING:O09018
PhosphoSite:O09018 Ensembl:ENSRNOT00000014152 GeneID:113984
KEGG:rno:113984 UCSC:RGD:69305 InParanoid:O09018 NextBio:618125
ArrayExpress:O09018 Genevestigator:O09018
GermOnline:ENSRNOG00000010308 Uniprot:O09018
Length = 414
Score = 161 (61.7 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 26/56 (46%), Positives = 41/56 (73%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVP 58
+ FF+RS+++ + Y C + C + + +RN+CQYCR KKCL VGM R++V+ GR+P
Sbjct: 100 KSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMP 155
Score = 63 (27.2 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VE+A+ +P F DL DQ+ L+++ + EL++
Sbjct: 224 VEWARNIPFFPDLQITDQVALLRLTWSELFV 254
>UNIPROTKB|F1ML62 [details] [associations]
symbol:NR2E3 "Photoreceptor-specific nuclear receptor"
species:9913 "Bos taurus" [GO:0060041 "retina development in
camera-type eye" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045872 "positive regulation of rhodopsin gene expression"
evidence=IEA] [GO:0042462 "eye photoreceptor cell development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0008285 GO:GO:0046872
GeneTree:ENSGT00670000097509 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 GO:GO:0005667
GO:GO:0000122 GO:GO:0060041 GO:GO:0042462 UniGene:Bt.241 CTD:10002
KO:K08546 OMA:MLSQHTK GO:GO:0045872 EMBL:DAAA02027989
IPI:IPI01028398 RefSeq:NP_001161372.1 Ensembl:ENSBTAT00000018926
GeneID:281944 KEGG:bta:281944 NextBio:20805821 Uniprot:F1ML62
Length = 411
Score = 167 (63.8 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 37/95 (38%), Positives = 56/95 (58%)
Query: 4 GFFRRSIQKQIEYRC-LRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
GFF+RS+++++ YRC + G C V + +RN+CQ CR KKCL GM++D+V+ R P+ +
Sbjct: 61 GFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQNERQPRSTA 120
Query: 63 E-RSDSETGSTRVSTTGAEPPSSLETAGPVQSLPS 96
+ R DS T P +L AGP P+
Sbjct: 121 QVRMDSVESETEPRLQPLATPPAL--AGPSSRGPT 153
Score = 56 (24.8 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
V++AK +P F +L DQ+IL++ + EL++
Sbjct: 233 VKWAKNLPVFSNLPFRDQVILLEEAWSELFL 263
>UNIPROTKB|Q9TTF0 [details] [associations]
symbol:NR2E3 "Photoreceptor-specific nuclear receptor"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0003700 GO:GO:0006351 HOGENOM:HOG000260820 HSSP:P19793
eggNOG:NOG277339 EMBL:AF107729 IPI:IPI00954760 UniGene:Bt.241
STRING:Q9TTF0 InParanoid:Q9TTF0 OrthoDB:EOG41C6WF Uniprot:Q9TTF0
Length = 411
Score = 167 (63.8 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 37/95 (38%), Positives = 56/95 (58%)
Query: 4 GFFRRSIQKQIEYRC-LRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
GFF+RS+++++ YRC + G C V + +RN+CQ CR KKCL GM++D+V+ R P+ +
Sbjct: 61 GFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQNERQPRSTA 120
Query: 63 E-RSDSETGSTRVSTTGAEPPSSLETAGPVQSLPS 96
+ R DS T P +L AGP P+
Sbjct: 121 QVRMDSVESETEPRLQPLATPPAL--AGPSSRGPT 153
Score = 56 (24.8 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
V++AK +P F +L DQ+IL++ + EL++
Sbjct: 233 VKWAKNLPVFSNLPFRDQVILLEEAWSELFL 263
>UNIPROTKB|F1N3S3 [details] [associations]
symbol:NR2F6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050965 "detection of temperature stimulus involved in
sensory perception of pain" evidence=IEA] [GO:0048666 "neuron
development" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0043153 "entrainment of circadian clock
by photoperiod" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003068
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01282 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GeneTree:ENSGT00670000097509 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0050965 GO:GO:0000122
GO:GO:0048666 GO:GO:0030522 GO:GO:0043153 CTD:2063 KO:K08549
OMA:DPNGGTN EMBL:DAAA02019082 IPI:IPI00705246 RefSeq:XP_002688591.2
RefSeq:XP_002704762.2 Ensembl:ENSBTAT00000014791 GeneID:100296331
KEGG:bta:100296331 Uniprot:F1N3S3
Length = 412
Score = 166 (63.5 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 34/87 (39%), Positives = 53/87 (60%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+ FF+RSI++ + Y C + C + + +RN+CQYCR KKC VGM +++V+ GR+P
Sbjct: 79 KSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYCRLKKCFRVGMRKEAVQRGRIPH--- 135
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAG 89
S G+ S+ G+ P S+L AG
Sbjct: 136 ----SLPGTVAASS-GSPPGSALAVAG 157
Score = 57 (25.1 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VE+A+ P F +L DQ+ L+++ + EL++
Sbjct: 222 VEWARHAPFFPELPVADQVALLRLSWSELFV 252
>UNIPROTKB|F1S962 [details] [associations]
symbol:NR2F6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050965 "detection of temperature stimulus involved in
sensory perception of pain" evidence=IEA] [GO:0048666 "neuron
development" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0043153 "entrainment of circadian clock
by photoperiod" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003068
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01282 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GeneTree:ENSGT00670000097509 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0050965 GO:GO:0000122
GO:GO:0048666 GO:GO:0030522 GO:GO:0043153 CTD:2063 KO:K08549
OMA:DPNGGTN EMBL:CU914416 RefSeq:XP_003123537.1 UniGene:Ssc.1893
Ensembl:ENSSSCT00000015156 GeneID:100516724 KEGG:ssc:100516724
Uniprot:F1S962
Length = 414
Score = 166 (63.5 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 34/87 (39%), Positives = 53/87 (60%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+ FF+RSI++ + Y C + C + + +RN+CQYCR KKC VGM +++V+ GR+P
Sbjct: 81 KSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYCRLKKCFRVGMRKEAVQRGRIPH--- 137
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAG 89
S G+ S+ G+ P S+L AG
Sbjct: 138 ----SLPGAVAASS-GSPPGSALAAAG 159
Score = 57 (25.1 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VE+A+ P F +L DQ+ L+++ + EL++
Sbjct: 224 VEWARHAPFFPELPVADQVALLRLSWSELFV 254
>UNIPROTKB|E2R3D0 [details] [associations]
symbol:NR2F6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050965 "detection of temperature stimulus
involved in sensory perception of pain" evidence=IEA] [GO:0048666
"neuron development" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0043153 "entrainment of circadian
clock by photoperiod" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003068
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01282 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GeneTree:ENSGT00670000097509 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0050965 GO:GO:0000122
GO:GO:0048666 GO:GO:0030522 GO:GO:0043153 CTD:2063 KO:K08549
OMA:DPNGGTN EMBL:AAEX03012299 EMBL:AAEX03012298 RefSeq:XP_852412.1
Ensembl:ENSCAFT00000024566 GeneID:609720 KEGG:cfa:609720
NextBio:20895307 Uniprot:E2R3D0
Length = 416
Score = 166 (63.5 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+ FF+RSI++ + Y C + C + + +RN+CQYCR KKC VGM +++V+ GR+P
Sbjct: 82 KSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYCRLKKCFRVGMRKEAVQRGRIPHSLP 141
Query: 63 ERSDSETGSTRVSTTGAEPPSSLETAGPVQSL 94
+ +GS S A L PV L
Sbjct: 142 GAVAASSGSPPGSALAAAAGGDLFPGQPVSEL 173
Score = 57 (25.1 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VE+A+ P F +L DQ+ L+++ + EL++
Sbjct: 226 VEWARHAPFFPELPVADQVALLRLSWSELFV 256
>ZFIN|ZDB-GENE-030131-4362 [details] [associations]
symbol:nr2f6a "nuclear receptor subfamily 2, group
F, member 6a" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003068 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01282 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 ZFIN:ZDB-GENE-030131-4362 GO:GO:0005634 GO:GO:0046872
GeneTree:ENSGT00670000097509 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0030522 HOGENOM:HOG000260820
HOVERGEN:HBG005606 KO:K08549 OMA:DPNGGTN HSSP:P20393 EMBL:CR384062
EMBL:BC065330 IPI:IPI00494205 RefSeq:NP_991120.1 UniGene:Dr.77527
SMR:Q6P117 Ensembl:ENSDART00000022379 GeneID:325637 KEGG:dre:325637
CTD:325637 InParanoid:Q6P117 NextBio:20809398 Uniprot:Q6P117
Length = 402
Score = 161 (61.7 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 27/67 (40%), Positives = 43/67 (64%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+ FF+RS+++ + Y C + C + + +RN+CQYCR KKC VGM +++V+ GR+P
Sbjct: 74 KSFFKRSVRRNLNYTCRSNRDCQIDQHHRNQCQYCRLKKCFRVGMRKEAVQRGRIPPSHS 133
Query: 63 ERSDSET 69
S S T
Sbjct: 134 SLSPSTT 140
Score = 61 (26.5 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 179 VVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
++E+A+ +P F +L +Q+ L+++ + EL+I
Sbjct: 211 IIEWARNIPYFPELPVSEQVALLRLSWSELFI 242
Score = 37 (18.1 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 171 HVTP-SVQRVVEFAKRVPGFCD 191
H +P S +RVV F +V F D
Sbjct: 264 HSSPMSAERVVSFMDQVRVFQD 285
>MGI|MGI:1352453 [details] [associations]
symbol:Nr2f6 "nuclear receptor subfamily 2, group F, member
6" species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043153 "entrainment of circadian clock
by photoperiod" evidence=IMP] [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048666 "neuron development" evidence=IMP]
[GO:0050965 "detection of temperature stimulus involved in sensory
perception of pain" evidence=IMP] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003068
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01282 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 MGI:MGI:1352453
GO:GO:0005634 GO:GO:0046872 GeneTree:ENSGT00670000097509
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0050965
GO:GO:0000122 GO:GO:0048666 GO:GO:0030522 EMBL:CH466569
GO:GO:0043153 HOGENOM:HOG000260820 HOVERGEN:HBG005606 HSSP:P03372
CTD:2063 eggNOG:NOG277317 KO:K08549 OMA:DPNGGTN OrthoDB:EOG4FN4HT
EMBL:X76654 EMBL:L25674 EMBL:AK131941 EMBL:AK171552 EMBL:BC008138
IPI:IPI00117237 PIR:I48734 PIR:I49640 RefSeq:NP_034280.2
UniGene:Mm.28989 ProteinModelPortal:P43136 SMR:P43136 IntAct:P43136
STRING:P43136 PhosphoSite:P43136 PaxDb:P43136 PRIDE:P43136
Ensembl:ENSMUST00000002466 GeneID:13864 KEGG:mmu:13864
InParanoid:Q922G8 NextBio:284756 Bgee:P43136 CleanEx:MM_NR2F6
Genevestigator:P43136 GermOnline:ENSMUSG00000002393 Uniprot:P43136
Length = 390
Score = 162 (62.1 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 32/84 (38%), Positives = 49/84 (58%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR-S 61
+ FF+RSI++ + Y C + C + + +RN+CQYCR KKC VGM +++V+ GR+P
Sbjct: 78 KSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYCRLKKCFRVGMRKEAVQRGRIPHALP 137
Query: 62 RERSDSETGSTRVSTTGAEPPSSL 85
+ S G+T V P S L
Sbjct: 138 GPAACSPPGATGVEPFTGPPVSEL 161
Score = 58 (25.5 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 180 VEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
VE+A+ P F +L DQ+ L+++ + EL++
Sbjct: 201 VEWARHAPFFPELPAADQVALLRLSWSELFV 231
WARNING: HSPs involving 474 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.134 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 240 220 0.00094 112 3 11 22 0.47 32
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 724
No. of states in DFA: 608 (65 KB)
Total size of DFA: 183 KB (2105 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.31u 0.10s 21.41t Elapsed: 00:00:02
Total cpu time: 21.34u 0.10s 21.44t Elapsed: 00:00:02
Start: Thu Aug 15 11:22:10 2013 End: Thu Aug 15 11:22:12 2013
WARNINGS ISSUED: 2