RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7884
(240 letters)
>d1n46a_ a.123.1.1 (A:) Thyroid hormone receptor beta (TR-beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 92.0 bits (228), Expect = 3e-23
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 108 YDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQ 167
+++I V++AH + +K LP +P V + L +
Sbjct: 9 WELIKTVTEAHVATNAQGSH----WKQKRKFLPEDIGQAPIVNAPE---GGKVDLEAFSH 61
Query: 168 FAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL--TTDSSLTFS 225
F +TP++ RVV+FAK++P FC+L +DQ+IL+K E+ + +LT +
Sbjct: 62 FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLN 121
Query: 226 DGMYVTRQQLEVMY 239
M VTR QL+
Sbjct: 122 GEMAVTRGQLKNGG 135
>d1n83a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 89.4 bits (221), Expect = 3e-22
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
Query: 107 TYDVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQ 166
+ +S++H C+Y E +++ + QR +WQ
Sbjct: 13 LEHLAQNISKSHLETCQYLREELQQITWQTFLQE-----------EIENYQNKQREVMWQ 61
Query: 167 QFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR-LTTDSSLTFS 225
A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ + R + ++ +
Sbjct: 62 LCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYF 121
Query: 226 DGMYVTRQQLEVMY 239
DG Y + + +
Sbjct: 122 DGKYASPDVFKSLG 135
>d1nq7a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-beta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 244
Score = 84.4 bits (208), Expect = 2e-20
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 12/132 (9%)
Query: 109 DVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF 168
+ + ++H C+YT E +L + + + + R LWQQ
Sbjct: 7 RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSK-----------SREALWQQC 55
Query: 169 AAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI-GYVSRLTTDSSLTFSDG 227
A +T ++Q VVEFAKR+ GF +L Q+DQ++L+K G E+ + ++ +G
Sbjct: 56 AIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEG 115
Query: 228 MYVTRQQLEVMY 239
Y Q + +
Sbjct: 116 KYGGMQMFKALG 127
>d1fcya_ a.123.1.1 (A:) Retinoic acid receptor gamma (RAR-gamma)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 83.5 bits (206), Expect = 4e-20
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 19/133 (14%)
Query: 109 DVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF 168
++I VS+AH + L +S A+ L LW +F
Sbjct: 7 ELITKVSKAHQETFPSLCQ-----------LGKYTTNSS------ADHRVQLDLGLWDKF 49
Query: 169 AAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTT--DSSLTFSD 226
+ T + ++VEFAKR+PGF LS DQ+ L+K ++ + + T ++TFSD
Sbjct: 50 SELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSD 109
Query: 227 GMYVTRQQLEVMY 239
G+ + R Q+
Sbjct: 110 GLTLNRTQMHNAG 122
>d1kb2a_ g.39.1.2 (A:) Vitamin D3 receptor, VDR, DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 78.1 bits (192), Expect = 1e-19
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 4 GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSRE 63
GFFRRS++++ + C +G C + + NR CQ CR K+C+ +GM ++ + +R RE
Sbjct: 25 GFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKRE 84
Query: 64 R 64
Sbjct: 85 M 85
>d1dszb_ g.39.1.2 (B:) Retinoid X receptor (RXR-alpha) DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 74.6 bits (183), Expect = 3e-18
Identities = 26/53 (49%), Positives = 40/53 (75%)
Query: 4 GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGR 56
GFF+R+++K + Y C + CL+ + RNRCQYCR++KCLA+GM R++V+ R
Sbjct: 30 GFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 82
>d1pdua_ a.123.1.1 (A:) Nuclear hormone receptor HR38 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 230
Score = 77.7 bits (191), Expect = 5e-18
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 161 RLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTT 218
QQF +T SV + +FA+++PG+ DL +DQ +L + EL++ ++
Sbjct: 34 EADKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRARID 93
Query: 219 DSSLTFSDGMYVTRQQL 235
D+ L F +G + R Q
Sbjct: 94 DTKLIFCNGTVLHRTQC 110
>d2qw4a1 a.123.1.1 (A:32-264) Orphan nuclear receptor NR4A1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 77.4 bits (190), Expect = 6e-18
Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 109 DVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF 168
+++ ++ +AH + T K E+ P A QQF
Sbjct: 1 NLLTSLVRAHLDSGPST--------AKLDYSKFQELVLPHFGKEDAG--------DVQQF 44
Query: 169 AAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSD 226
++ S++ + ++A+++PGF +LS DQ +L++ F EL+I ++ + L F
Sbjct: 45 YDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCS 104
Query: 227 GMYVTRQQLE 236
G+ + R Q
Sbjct: 105 GLVLHRLQCA 114
>d1ovla_ a.123.1.1 (A:) Orphan nuclear receptor NURR1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 236
Score = 77.4 bits (190), Expect = 7e-18
Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 18/132 (13%)
Query: 110 VILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFA 169
+I A+ +AH + L P +++ + QQF
Sbjct: 2 LISALVRAHV----DSNPAMTSLDYSRFQANPD----YQMSGDDTQ--------HIQQFY 45
Query: 170 AHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDG 227
+T S++ + +A+++PGF DL + DQ +L + F EL++ ++ + L F +G
Sbjct: 46 DLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVEGKLIFCNG 105
Query: 228 MYVTRQQLEVMY 239
+ + R Q +
Sbjct: 106 VVLHRLQCVRGF 117
>d1ie9a_ a.123.1.1 (A:) Vitamin D nuclear receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 255
Score = 77.8 bits (191), Expect = 7e-18
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 12/128 (9%)
Query: 109 DVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF 168
+I + AHH + T + R PV + S E +L +
Sbjct: 13 RIIAILLDAHHKTYDPTYSDFCQF-RPPVRVNDGGGSVTL---------ELSQLSMLPHL 62
Query: 169 AAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTT--DSSLTFSD 226
A V+ S+Q+V+ FAK +PGF DL+ +DQ++L+K E+ + + T D S T +
Sbjct: 63 ADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGN 122
Query: 227 GMYVTRQQ 234
Y R
Sbjct: 123 QDYKYRVS 130
>d2b50b1 a.123.1.1 (B:211-475) Peroxisome proliferator-activated
receptor delta, PPAR-DELTA {Human (Homo sapiens) [TaxId:
9606]}
Length = 265
Score = 76.9 bits (189), Expect = 2e-17
Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 13/112 (11%)
Query: 127 EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRV 186
+ + LV K + V ++ + +V+ + EFAK +
Sbjct: 47 QAEKGLVWKQLVNGLPPYKEISV-------------HVFYRCQCTTVETVRELTEFAKSI 93
Query: 187 PGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYVTRQQLEVM 238
P F L +DQ+ L+K G E ++ + L ++G ++
Sbjct: 94 PSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTREFLRS 145
>d2r40d1 a.123.1.1 (D:287-529) Ecdysone receptor {Noctuid moth
(Heliothis virescens) [TaxId: 7102]}
Length = 243
Score = 75.8 bits (186), Expect = 3e-17
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 139 LPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQL 198
P E + ++ + ++Q +VQ +VEFAK +PGF +SQ DQ+
Sbjct: 24 QPSEEDLKRVTQTWQSDEDDEDSDMPFRQITEMTILTVQLIVEFAKGLPGFAKISQSDQI 83
Query: 199 ILIKMGFFELWIGYVSRL--TTDSSLTFSDGMYVTRQQLEVMY 239
L+K E+ + V+R S+ F++ TR
Sbjct: 84 TLLKACSSEVMMLRVARRYDAATDSVLFANNQAYTRDNYRKAG 126
>d2hanb1 g.39.1.2 (B:5-87) Ecdysone receptor DNA-binding domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 83
Score = 70.8 bits (173), Expect = 8e-17
Identities = 25/60 (41%), Positives = 30/60 (50%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+GFFRRS+ K Y C C + R +CQ CR KKCLAVGM + V R
Sbjct: 24 KGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKR 83
>d1lo1a_ g.39.1.2 (A:) Steroid hormone receptor Err2 DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 70.0 bits (171), Expect = 2e-16
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
+ FF+R+IQ IEY C +C + + R CQ CRF K L VGM ++ VR RV +
Sbjct: 28 KAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKALKVGMLKEGVRLDRVRGGRQ 87
>d1a6ya_ g.39.1.2 (A:) Orphan nuclear receptor reverb DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 69.2 bits (169), Expect = 2e-16
Identities = 37/55 (67%), Positives = 49/55 (89%), Gaps = 1/55 (1%)
Query: 3 QGFFRRSIQKQIEYR-CLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGR 56
+GFFRRSIQ+ I+Y+ CL++ C ++R+NRNRCQ CRFKKCL+VGMSRD+VR+GR
Sbjct: 24 KGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGR 78
>d1cita_ g.39.1.2 (A:) Orphan nuclear receptor NGFI-B DNA-binding
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 89
Score = 68.6 bits (167), Expect = 7e-16
Identities = 29/59 (49%), Positives = 40/59 (67%)
Query: 4 GFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKRSR 62
GFF+R++QK +Y CL + C V + RNRCQ+CRF+KCLAVGM ++ VR + R
Sbjct: 25 GFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 83
>d2fvja1 a.123.1.1 (A:207-477) Peroxisome proliferator activated
receptor gamma, PPAR-gamma {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 72.3 bits (177), Expect = 9e-16
Identities = 23/142 (16%), Positives = 53/142 (37%), Gaps = 13/142 (9%)
Query: 110 VILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEV----SSPEVASSTAECHE------- 158
+ + ++ + T+ R ++ + V +S + +
Sbjct: 8 LAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQ 67
Query: 159 --SQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRL 216
+ ++Q +VQ + E+AK +PGF +L +DQ+ L+K G E+ ++ L
Sbjct: 68 SKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASL 127
Query: 217 TTDSSLTFSDGMYVTRQQLEVM 238
+ S+G ++
Sbjct: 128 MNKDGVLISEGQGFMTREFLKS 149
>d2p54a1 a.123.1.1 (A:202-468) Peroxisome proliferator activated
receptor alpha, PPAR-alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 267
Score = 72.0 bits (176), Expect = 1e-15
Identities = 27/136 (19%), Positives = 58/136 (42%), Gaps = 13/136 (9%)
Query: 114 VSQAHHSNCEYTEEGTRRLVRKPVSLPPS----EVSSPEVASSTAEC--------HESQR 161
+ +A+ N + R ++ S P ++ + +A T ++
Sbjct: 9 IYEAYLKNFNMNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANGIQNKEAE 68
Query: 162 LWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSS 221
+ ++ +V + EFAK +PGF +L +DQ+ L+K G +E +S +
Sbjct: 69 VRIFHCCQCTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDG 128
Query: 222 LTFSDG-MYVTRQQLE 236
+ + G ++TR+ L+
Sbjct: 129 MLVAYGNGFITREFLK 144
>d1osha_ a.123.1.1 (A:) Bile acid receptor FXR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 231
Score = 70.0 bits (171), Expect = 3e-15
Identities = 17/76 (22%), Positives = 30/76 (39%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLT 223
+ T VQ +VEF K++PGF L +DQ+ L+K E + + +
Sbjct: 43 NFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPS 102
Query: 224 FSDGMYVTRQQLEVMY 239
+ R + +
Sbjct: 103 GHSDLLEERIRNSGIS 118
>d1nrla_ a.123.1.1 (A:) Pregnane x receptor, PXR {Human (Homo
sapiens) [TaxId: 9606]}
Length = 292
Score = 69.7 bits (170), Expect = 8e-15
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 1/103 (0%)
Query: 138 SLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQ 197
E S A+ + L A T + ++ FAK + F DL +DQ
Sbjct: 72 LQLRGEDGSVWNYKPPADSGGKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQ 131
Query: 198 LILIKMGFFELWI-GYVSRLTTDSSLTFSDGMYVTRQQLEVMY 239
+ L+K FEL + + ++ + + +
Sbjct: 132 ISLLKGAAFELCQLRFNTVFNAETGTWECGRLSYCLEDTAGGF 174
>d1pq9a_ a.123.1.1 (A:) Oxysterols receptor LXR-beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 239
Score = 68.9 bits (168), Expect = 8e-15
Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 16/123 (13%)
Query: 116 QAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPS 175
A + + ++ P+ P R + F S
Sbjct: 14 AAQLQCNKRSFSDQPKVTPWPLGADPQ--------------SRDARQQRFAHFTELAIIS 59
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDS--SLTFSDGMYVTRQ 233
VQ +V+FAK+VPGF L ++DQ+ L+K E+ + +R +TF ++
Sbjct: 60 VQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKD 119
Query: 234 QLE 236
Sbjct: 120 DFH 122
>d1dsza_ g.39.1.2 (A:) Retinoic acid receptor DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 65.1 bits (158), Expect = 9e-15
Identities = 31/52 (59%), Positives = 40/52 (76%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRY 54
+GFFRRSIQK + Y C RD C++ ++ RNRCQYCR +KC VGMS++SVR
Sbjct: 23 KGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRN 74
>d1xvpb_ a.123.1.1 (B:) Orphan nuclear receptor NR1I3 (CAR) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 246
Score = 68.6 bits (167), Expect = 2e-14
Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 12/134 (8%)
Query: 109 DVILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQF 168
++I + AH + E + R P L P +A L L F
Sbjct: 10 ELIRTLLGAHTRHMGTMFEQFVQF-RPPAHLFIHHQPLPTLAP---------VLPLVTHF 59
Query: 169 AAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTT--DSSLTFSD 226
A T V +V++F K +P F L +DQ+ L+K E+ ++ +
Sbjct: 60 ADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGP 119
Query: 227 GMYVTRQQLEVMYD 240
Y V +
Sbjct: 120 LRYTIEDGARVGFQ 133
>d1xnxa_ a.123.1.1 (A:) Orphan nuclear receptor NR1I3 (CAR) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 232
Score = 64.7 bits (157), Expect = 3e-13
Identities = 22/132 (16%), Positives = 44/132 (33%), Gaps = 12/132 (9%)
Query: 110 VILAVSQAHHSNCEYTEEGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFA 169
++ + AH + + + + P L L L FA
Sbjct: 10 LVQILLGAHTRHVGPLFDQFVQ-FKPPAYLFMHHRPFQ---------PRGPVLPLLTHFA 59
Query: 170 AHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTT--DSSLTFSDG 227
T VQ++++F K +P F L+ +DQ+ L+K E+ ++ +
Sbjct: 60 DINTFMVQQIIKFTKDLPLFRSLTMEDQISLLKGAAVEILHISLNTTFCLQTENFFCGPL 119
Query: 228 MYVTRQQLEVMY 239
Y + +
Sbjct: 120 CYKMEDAVHAGF 131
>d1lata_ g.39.1.2 (A:) Glucocorticoid receptor DNA-binding domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 59.7 bits (144), Expect = 1e-12
Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRD 50
+ FF+R+++ Q Y C +GKC++ ++ R C CR++KCL GM+ +
Sbjct: 24 KAFFKRAVEGQHNYLCKYEGKCIIDKIRRKNCPACRYRKCLQAGMNLE 71
>d1r4ia_ g.39.1.2 (A:) Androgen receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 74
Score = 59.3 bits (143), Expect = 1e-12
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRD 50
+ FF+R+ + + +Y C C + + R C CR +KC GM+
Sbjct: 26 KVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLG 73
>d1hcqa_ g.39.1.2 (A:) Estrogen receptor DNA-binding domain {Human
and chicken (Homo sapiens) and (Gallus gallus) [TaxId:
9606]}
Length = 74
Score = 57.1 bits (137), Expect = 8e-12
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 3 QGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSR 49
+ FF+RSIQ +Y C +C + + R CQ CR +KC VGM +
Sbjct: 28 KAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMK 74
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 52.9 bits (126), Expect = 5e-10
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 3 QGFFRRSIQKQIEY--RCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYGRVPKR 60
+GFFRR+IQK + C +GKC++ ++ RN+CQ CRFKKC+ VGM+ D V
Sbjct: 25 KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLA 84
Query: 61 SRERSDSE 68
R+ +
Sbjct: 85 KRKLIEEN 92
>d1xpca_ a.123.1.1 (A:) Estrogen receptor alpha {Human (Homo
sapiens) [TaxId: 9606]}
Length = 245
Score = 52.4 bits (125), Expect = 7e-09
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 147 PEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFF 206
P + S + + ++ +AKRVPGF DL+ DQ+ L++ +
Sbjct: 19 PILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWL 78
Query: 207 ELWIGYVSR--LTTDSSLTFSDGMYVTRQQLE 236
E+ + + + L F+ + + R Q +
Sbjct: 79 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGK 110
>d1pzla_ a.123.1.1 (A:) Hepatocyte nuclear factor 4-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 52.0 bits (124), Expect = 8e-09
Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 15/115 (13%)
Query: 127 EGTRRLVRKPVSLPPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRV 186
E R + PVS ++ + ++AS C + + +VE+AK +
Sbjct: 14 EVLSRQITSPVSGINGDIRAKKIASIADVCESMKEQ-------------LLVLVEWAKYI 60
Query: 187 PGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQQLEVMY 239
P FC+L DDQ+ L++ E + ++ + L + V R E+
Sbjct: 61 PAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAE 115
>d1pk5a_ a.123.1.1 (A:) Orphan nuclear receptor NR5a2 (LRH-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 242
Score = 52.0 bits (124), Expect = 9e-09
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI-GYVSR---LTTDSSLTFSDGMYVT 231
+ +VE+A+ F +L DDQ+ L++ + EL I ++ R + ++ G +V
Sbjct: 55 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVD 114
Query: 232 RQQLEVM 238
+
Sbjct: 115 YSTIISH 121
>d2p1ta1 a.123.1.1 (A:229-458) Retinoid-X receptor alpha (RXR-alpha)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 230
Score = 50.5 bits (120), Expect = 3e-08
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 140 PPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLI 199
P +E + E + + Q A + +VE+AKR+P F +L DDQ+I
Sbjct: 16 PKTE-TYVEANMGLNPSSPNDPVTNICQAADKQ---LFTLVEWAKRIPHFSELPLDDQVI 71
Query: 200 LIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQQLEVM 238
L++ G+ EL I S + + + G++V R
Sbjct: 72 LLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSA 112
>d3d24a1 a.123.1.1 (A:194-420) Steroid hormone receptor ERR1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 227
Score = 49.3 bits (117), Expect = 7e-08
Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 164 LWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSS 221
+ + +AK +PGF LS DQ+ +++ + E+ + V++ L
Sbjct: 31 AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDE 90
Query: 222 LTFSDGMYVTRQQLEVMY 239
L F++ + + +
Sbjct: 91 LAFAEDLVLDEEGARAAG 108
>d1g2na_ a.123.1.1 (A:) Ultraspiracle protein, usp {Heliothis
virescens [TaxId: 7102]}
Length = 256
Score = 47.4 bits (112), Expect = 3e-07
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSRLTTDSSLTFSDGMYVTRQQL 235
+ +V +A+ +P F L +DQ++LIK + EL + ++ + + DG+ T +
Sbjct: 55 IAALVVWARDIPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRT 114
>d1hg4a_ a.123.1.1 (A:) Ultraspiracle protein, usp {Drosophila
melanogaster [TaxId: 7227]}
Length = 265
Score = 46.3 bits (109), Expect = 1e-06
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 176 VQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWI 210
+ ++VE+A+ +P F + DDQ+IL+K + EL I
Sbjct: 52 LFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLI 86
>d1sqna_ a.123.1.1 (A:) Progesterone receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 251
Score = 45.8 bits (108), Expect = 1e-06
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR----LTTDSSLTFSDGMYVTRQ 233
VV+++K +PGF +L DDQ+ LI+ + L + + + L F+ + + Q
Sbjct: 47 SVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQ 106
Query: 234 QLEVMY 239
+++
Sbjct: 107 RMKESS 112
>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 236
Score = 45.1 bits (106), Expect = 2e-06
Identities = 19/101 (18%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 140 PPSEVSSPEVASSTAECHESQRLWLWQQFAAHVTPSVQRVVEFAKRVPGFCDLSQDDQLI 199
PP+ + S + E+ + + A + ++ +AK++PGF +LS DQ+
Sbjct: 16 PPNVLVS----RPSMPFTEASMMMSLTKLADK---ELVHMIGWAKKIPGFVELSLLDQVR 68
Query: 200 LIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTRQQLEVM 238
L++ + E+ + + + L F+ + + R + + +
Sbjct: 69 LLESCWMEVLMVGLMWRSIDHPGKLIFAPDLVLDRDEGKCV 109
>d1nhza_ a.123.1.1 (A:) Glucocorticoid receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 247
Score = 43.6 bits (102), Expect = 6e-06
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVS----RLTTDSSLTFSDGMYV 230
V V++AK +PGF +L DDQ+ L++ + L + R ++ + L F+ + +
Sbjct: 41 QVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDLII 100
Query: 231 TRQQLEVM 238
Q++ +
Sbjct: 101 NEQRMTLP 108
>d2e2ra1 a.123.1.1 (A:234-456) Orphan nuclear receptor ERR3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 43.1 bits (101), Expect = 9e-06
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 175 SVQRVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR--LTTDSSLTFSDGMYVTR 232
+ ++ +AK +PGF LS DQ+ L++ + E+ I V L+ + L ++D +
Sbjct: 42 ELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDE 101
Query: 233 QQLEVMY 239
Q ++
Sbjct: 102 DQSKLAG 108
>d1t7ra_ a.123.1.1 (A:) Androgen receptor {Chimpanzee (Pan
troglodytes) [TaxId: 9598]}
Length = 250
Score = 42.4 bits (99), Expect = 2e-05
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 178 RVVEFAKRVPGFCDLSQDDQLILIKMGFFELWIGYVSR----LTTDSSLTFSDGMYVTRQ 233
VV++AK +PGF +L DDQ+ +I+ + L + + L F+ +
Sbjct: 46 HVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEY 105
Query: 234 QLEVM 238
++
Sbjct: 106 RMHKS 110
>d1wh8a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 111
Score = 24.1 bits (52), Expect = 9.3
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 78 GAEPPSSLETAGPVQSLP-SSTELDTKQL 105
G+ S + G +Q + S ELDT +
Sbjct: 4 GSSGYSGSQAPGGIQEIVAMSPELDTYSI 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.132 0.395
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 836,413
Number of extensions: 35456
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 42
Length of query: 240
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,268,006
Effective search space: 199076942
Effective search space used: 199076942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)