BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7885
(79 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 60.8 bits (146), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVDTFR 79
PGRVN+IGEHIDYC YSV PMA+EQ++L+A + + L L N + Y D+ ++ + +
Sbjct: 61 PGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYALQLANTNPL-YPDFSTSANNIQ 119
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
pdb|2AJ4|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
Length = 548
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 6/56 (10%)
Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKC--NENGDLNLYNID----DQKYD 69
PGRVNLIGEHIDYC +SV P+A++ ++L A K +N + L N D +K+D
Sbjct: 71 PGRVNLIGEHIDYCDFSVLPLAIDFDMLCAVKVLNEKNPSITLINADPKFAQRKFD 126
>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p
pdb|3V5R|B Chain B, Crystal Structure Of The Unliganded Form Of Gal3p
Length = 505
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKC--NENGDLNLYNID 64
PGRVNLIGEHIDYC +SV P+A++ ++L A K +N + L N D
Sbjct: 30 PGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPSITLTNAD 76
>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of
The Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|D Chain D, Crystal Structure Of The Yeast Gal Regulon Complex Of
The Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 520
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKC--NENGDLNLYNID 64
PGRVNLIGEHIDYC +SV P+A++ ++L A K +N + L N D
Sbjct: 45 PGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPSITLTNAD 91
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYN 62
PGRVNLIGEH DY V PMA+ N+ + ++G++ LY+
Sbjct: 7 PGRVNLIGEHTDYTYGYVMPMAI--NLYTKIEAEKHGEVILYS 47
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 2 PGRVNLIGEHIDYCR-YSVPGRVNL 25
PGRVNLIGEH DY Y +P +NL
Sbjct: 7 PGRVNLIGEHTDYTYGYVMPMAINL 31
>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|B Chain B, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|C Chain C, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|D Chain D, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
Length = 399
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 18 SVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNL 60
S PGRVNLIGEH DY + V P ALE ++ ++G ++L
Sbjct: 40 SAPGRVNLIGEHTDYNQGLVLPXALELXTVLVGSPRKDGLVSL 82
Score = 32.0 bits (71), Expect = 0.084, Method: Composition-based stats.
Identities = 12/13 (92%), Positives = 12/13 (92%)
Query: 2 PGRVNLIGEHIDY 14
PGRVNLIGEH DY
Sbjct: 42 PGRVNLIGEHTDY 54
>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|B Chain B, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|C Chain C, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|D Chain D, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|E Chain E, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|F Chain F, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|G Chain G, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|H Chain H, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|I Chain I, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
Length = 352
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 20 PGRVNLIGEHIDYCRYSVCPMALE 43
PGRVNLIGEH DY V P A++
Sbjct: 9 PGRVNLIGEHTDYTYGYVXPXAID 32
Score = 33.1 bits (74), Expect = 0.039, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 2 PGRVNLIGEHIDYCR-YSVPGRVNL 25
PGRVNLIGEH DY Y P ++L
Sbjct: 9 PGRVNLIGEHTDYTYGYVXPXAIDL 33
>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase
Complexed With Galactose
Length = 419
Score = 33.1 bits (74), Expect = 0.038, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYN 62
PGR+NLIGEH DY V P ++ + E+ + LY+
Sbjct: 54 PGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKVKLYS 96
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 11/13 (84%), Positives = 12/13 (92%)
Query: 2 PGRVNLIGEHIDY 14
PGR+NLIGEH DY
Sbjct: 54 PGRINLIGEHTDY 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.144 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,720,925
Number of Sequences: 62578
Number of extensions: 95562
Number of successful extensions: 182
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 17
length of query: 79
length of database: 14,973,337
effective HSP length: 48
effective length of query: 31
effective length of database: 11,969,593
effective search space: 371057383
effective search space used: 371057383
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)