Query psy7885
Match_columns 79
No_of_seqs 119 out of 1063
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 21:17:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7885.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7885hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10509 GalKase_gal_bdg: Gala 99.9 1.2E-24 2.5E-29 124.5 2.2 39 15-53 14-52 (52)
2 PLN02865 galactokinase 99.9 3.5E-22 7.7E-27 152.2 6.3 70 4-73 11-89 (423)
3 COG0153 GalK Galactokinase [Ca 99.9 5.2E-22 1.1E-26 150.1 6.9 55 15-69 24-78 (390)
4 PLN02521 galactokinase 99.8 4E-20 8.8E-25 143.1 6.8 63 3-65 30-100 (497)
5 PTZ00290 galactokinase; Provis 99.8 2.3E-19 5E-24 138.3 5.1 61 4-64 14-90 (468)
6 PRK05322 galactokinase; Provis 99.8 6.5E-19 1.4E-23 132.2 6.9 71 6-76 4-81 (387)
7 PRK00555 galactokinase; Provis 99.8 2.2E-18 4.7E-23 128.5 7.4 53 15-67 3-55 (363)
8 PRK05101 galactokinase; Provis 99.7 2.1E-17 4.5E-22 123.8 7.1 62 5-66 4-72 (382)
9 TIGR00131 gal_kin galactokinas 99.7 3.8E-17 8.2E-22 121.9 6.3 61 6-66 2-69 (386)
10 KOG0631|consensus 99.7 4.2E-17 9.2E-22 125.9 5.7 62 15-77 40-103 (489)
11 TIGR00549 mevalon_kin mevalona 99.5 3.3E-14 7.2E-19 100.6 5.2 46 19-65 1-46 (273)
12 PRK03817 galactokinase; Provis 99.5 8.1E-14 1.8E-18 102.7 6.3 50 16-67 2-51 (351)
13 PRK13412 fkp bifunctional fuco 99.4 3.2E-13 6.8E-18 111.4 7.2 54 15-68 610-673 (974)
14 TIGR01220 Pmev_kin_Gr_pos phos 99.3 4.4E-12 9.5E-17 94.5 7.2 51 16-66 2-53 (358)
15 PLN02677 mevalonate kinase 99.2 3.8E-11 8.2E-16 91.0 6.5 49 16-64 4-56 (387)
16 PRK03926 mevalonate kinase; Pr 99.1 7.7E-11 1.7E-15 84.9 5.8 45 16-61 3-47 (302)
17 TIGR00154 ispE 4-diphosphocyti 98.7 5.2E-08 1.1E-12 71.0 6.1 49 16-64 3-56 (293)
18 KOG1511|consensus 98.4 5.6E-07 1.2E-11 68.5 6.3 61 15-77 5-65 (397)
19 PRK00128 ipk 4-diphosphocytidy 98.4 7.5E-07 1.6E-11 63.9 5.6 48 16-63 4-56 (286)
20 PRK02534 4-diphosphocytidyl-2- 98.3 1.7E-06 3.7E-11 63.1 6.0 48 16-63 5-57 (312)
21 COG1577 ERG12 Mevalonate kinas 98.1 5.7E-06 1.2E-10 61.5 4.6 51 16-66 2-52 (307)
22 PTZ00298 mevalonate kinase; Pr 97.2 0.00042 9.1E-09 51.0 3.9 37 16-52 12-48 (328)
23 COG2605 Predicted kinase relat 96.9 0.0017 3.6E-08 48.9 4.7 46 16-61 3-54 (333)
24 PRK00343 ipk 4-diphosphocytidy 92.3 0.49 1.1E-05 34.2 5.7 47 16-63 8-60 (271)
25 TIGR01219 Pmev_kin_ERG8 phosph 86.6 2.2 4.7E-05 33.6 5.6 51 16-66 1-58 (454)
26 PRK14615 4-diphosphocytidyl-2- 65.2 29 0.00063 25.3 6.0 47 16-62 8-60 (296)
27 COG3890 ERG8 Phosphomevalonate 64.1 9.9 0.00022 28.9 3.4 33 17-49 6-39 (337)
28 KOG0180|consensus 57.5 15 0.00032 26.1 3.2 35 31-65 5-39 (204)
29 COG1228 HutI Imidazolonepropio 50.5 15 0.00032 28.3 2.5 42 15-56 30-81 (406)
30 PRK14612 4-diphosphocytidyl-2- 47.7 64 0.0014 23.0 5.3 44 17-61 5-53 (276)
31 PRK14611 4-diphosphocytidyl-2- 43.3 50 0.0011 23.6 4.1 38 17-54 4-46 (275)
32 COG1231 Monoamine oxidase [Ami 41.6 14 0.0003 29.4 1.1 19 19-37 410-429 (450)
33 PRK14616 4-diphosphocytidyl-2- 38.6 92 0.002 22.3 5.0 39 16-54 5-48 (287)
34 PF06554 Olfactory_mark: Olfac 32.4 44 0.00096 22.7 2.3 18 15-32 59-76 (151)
35 COG1362 LAP4 Aspartyl aminopep 32.1 46 0.00099 26.4 2.6 27 23-49 80-129 (437)
36 smart00813 Alpha-L-AF_C Alpha- 31.8 1.6E+02 0.0035 19.8 6.1 50 29-78 76-139 (189)
37 PRK04181 4-diphosphocytidyl-2- 28.3 1.3E+02 0.0028 21.7 4.3 45 16-61 2-52 (257)
38 PTZ00204 hypothetical protein; 28.0 57 0.0012 21.1 2.1 32 28-61 57-88 (120)
39 PRK14610 4-diphosphocytidyl-2- 27.4 1.9E+02 0.0042 20.8 5.1 46 16-61 5-56 (283)
40 PF05582 Peptidase_U57: YabG p 26.4 33 0.00071 25.8 0.9 11 16-26 223-233 (287)
41 KOG2445|consensus 25.5 1.3E+02 0.0029 23.2 4.0 39 22-61 277-315 (361)
42 COG1448 TyrB Aspartate/tyrosin 23.4 49 0.0011 25.9 1.4 24 3-27 356-379 (396)
43 PRK14608 4-diphosphocytidyl-2- 23.3 2.9E+02 0.0063 19.9 5.7 47 16-62 8-59 (290)
44 TIGR02855 spore_yabG sporulati 23.3 39 0.00085 25.3 0.8 11 16-26 222-232 (283)
45 KOG1412|consensus 21.3 75 0.0016 24.8 2.0 27 2-28 342-387 (410)
46 COG3491 PcbC Isopenicillin N s 20.9 34 0.00073 26.1 0.1 16 18-33 185-200 (322)
47 PF13594 Amidohydro_5: Amidohy 20.4 61 0.0013 18.0 1.1 19 30-48 25-43 (68)
48 PF11512 Atu4866: Agrobacteriu 20.3 42 0.00091 20.6 0.4 16 20-35 39-54 (78)
No 1
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []. The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....
Probab=99.90 E-value=1.2e-24 Score=124.52 Aligned_cols=39 Identities=46% Similarity=0.588 Sum_probs=34.6
Q ss_pred EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeC
Q psy7885 15 CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCN 53 (79)
Q Consensus 15 ~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~ 53 (79)
.+++||||+|||||||||+||.||||||++++++++++|
T Consensus 14 ~~~~APGRvnliGeHtDy~gG~Vl~~Ai~~~~~~a~~~r 52 (52)
T PF10509_consen 14 VVASAPGRVNLIGEHTDYNGGFVLPAAIDLRTYVAVSPR 52 (52)
T ss_dssp EEEEEEEEEEEE-TT-GGGT-EEEEEEEEEEEEEEEEEE
T ss_pred EEEECCceEEecCcccccCCCeEEEEEeeccEEEEEEcC
Confidence 789999999999999999999999999999999999985
No 2
>PLN02865 galactokinase
Probab=99.86 E-value=3.5e-22 Score=152.24 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=59.3
Q ss_pred hhhhhhccee--E-------EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCCCcceEEe
Q psy7885 4 RVNLIGEHID--Y-------CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHS 73 (79)
Q Consensus 4 r~~~~~~~f~--y-------~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~~~~~~~l 73 (79)
.++++.+.|. | .+++||||||||||||||+||+||||||+++|+++++++++++++++|.++++...|.+
T Consensus 11 ~~~~l~~~F~~~fg~~p~~~~~~~APGRVnlIGEHtDYngG~VLp~AI~~~~~va~~~~~~~~i~v~s~~~~~~~~~~~ 89 (423)
T PLN02865 11 ELDEIRERVAAMSGRNSGEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDPEVLLRSAQFEGEVRFRV 89 (423)
T ss_pred HHHHHHHHHHHHhCCCcccceEEEcCcceecccccccCCCCeEEeEEeeccEEEEEEECCCCEEEEEECCCCCceEEec
Confidence 4556777777 6 36899999999999999999999999999999999999999999999988754334443
No 3
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=5.2e-22 Score=150.06 Aligned_cols=55 Identities=36% Similarity=0.514 Sum_probs=51.7
Q ss_pred EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCCCcc
Q psy7885 15 CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYD 69 (79)
Q Consensus 15 ~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~~~~ 69 (79)
..++|||||||||||||||||+||||||++++++++++++|..++++|.+++...
T Consensus 24 ~~~~aPGRvNLIGEHtDYn~G~VlP~Ain~~t~v~v~~r~d~~v~l~s~n~~~~~ 78 (390)
T COG0153 24 VTAFAPGRVNLIGEHTDYNGGFVLPCAINYGTYVAVAKRDDGKVRLYSANFGNAG 78 (390)
T ss_pred eEecCCceEEeeccceeccCceEEEEEeecceEEEEEEccCceEEEEeCCCcccc
Confidence 7789999999999999999999999999999999999999999999999986443
No 4
>PLN02521 galactokinase
Probab=99.81 E-value=4e-20 Score=143.15 Aligned_cols=63 Identities=44% Similarity=0.655 Sum_probs=58.2
Q ss_pred hhhhhhhccee--E-----EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCC-CcEEEEEcCC
Q psy7885 3 GRVNLIGEHID--Y-----CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNEN-GDLNLYNIDD 65 (79)
Q Consensus 3 ~r~~~~~~~f~--y-----~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d-~~v~i~s~~~ 65 (79)
.|++++.+.|. | .+++|||||||||||+||+||+||||||+++++++++++++ +.+++.+.+.
T Consensus 30 ~r~~~l~~~F~~~fg~~p~~~~~APGRVnLiGEHtDy~gg~vLp~AI~~~~~v~~~~~~~~~~i~i~s~~~ 100 (497)
T PLN02521 30 LRYARLKAAFVEVYGAKPDLFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRRAEGSKKLRIANVND 100 (497)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCceEEEeccceeecCCeEEEEEEcCcEEEEEEEcCCCCEEEEEECCC
Confidence 48999999998 7 77899999999999999999999999999999999999987 7899988775
No 5
>PTZ00290 galactokinase; Provisional
Probab=99.77 E-value=2.3e-19 Score=138.33 Aligned_cols=61 Identities=26% Similarity=0.373 Sum_probs=51.3
Q ss_pred hhhhhhccee--E-----------EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeC---CCCcEEEEEcC
Q psy7885 4 RVNLIGEHID--Y-----------CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCN---ENGDLNLYNID 64 (79)
Q Consensus 4 r~~~~~~~f~--y-----------~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~---~d~~v~i~s~~ 64 (79)
+++++.+.|. | ++++||||||||||||||+||+||||||+++++++++++ +++++++.+..
T Consensus 14 ~~~~l~~~F~~~fG~~p~~~~~~~~~~~APGRVnLIGEHtDYngG~VLp~AId~~~~va~~~~~~~~~~~i~~~~~~ 90 (468)
T PTZ00290 14 TLSTLKPIFLETFKVENDADVEWLLFTFAPGRVNFIGEHVDYMGGYVCPAAVLEGCHILVGRVKHFCDHKLRFATET 90 (468)
T ss_pred HHHHHHHHHHHHhCCCcccccceeEEEeccceeeecccccccCCCeeeeccccCcEEEEEeecCCCCCCeEEEEECC
Confidence 4667778887 6 235999999999999999999999999999999999765 56788886544
No 6
>PRK05322 galactokinase; Provisional
Probab=99.77 E-value=6.5e-19 Score=132.21 Aligned_cols=71 Identities=25% Similarity=0.405 Sum_probs=59.4
Q ss_pred hhhhccee--E-----EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCCCcceEEeecC
Q psy7885 6 NLIGEHID--Y-----CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVD 76 (79)
Q Consensus 6 ~~~~~~f~--y-----~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~~~~~~~l~l~ 76 (79)
+++.+.|. | .+++|||||||+|||+||+||+|||+||++++++++++++++.+++.+.+++....++++++
T Consensus 4 ~~~~~~f~~~fg~~p~~~~~APgRv~L~GEH~d~~g~~vl~~AI~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~~~~~ 81 (387)
T PRK05322 4 EELKKKFAEVFGEEAEDVFFSPGRINLIGEHTDYNGGHVFPAAITLGTYGAARKRDDKKVRLYSANFEDLGIIEFDLD 81 (387)
T ss_pred HHHHHHHHHHhCCCCceEEEcCceeEecccceeecCceeeeeeccceEEEEEEECCCCEEEEEECCCCCCceEEEecc
Confidence 45667777 6 67899999999999999999999999999999999999999999999888743333444443
No 7
>PRK00555 galactokinase; Provisional
Probab=99.75 E-value=2.2e-18 Score=128.52 Aligned_cols=53 Identities=36% Similarity=0.565 Sum_probs=49.1
Q ss_pred EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCCC
Q psy7885 15 CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQK 67 (79)
Q Consensus 15 ~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~~ 67 (79)
+.++|||||||||||+||++|+|||+||++++++++++++++++++.+.+++.
T Consensus 3 ~~~~APGRv~LiGEH~dy~~g~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~ 55 (363)
T PRK00555 3 VRYAAPGRINLIGEHTDYNLGFALPIALPQRTVVTFTPEHTDAITASSDRADG 55 (363)
T ss_pred EEEEcCceEEeecccccCCCCeEEeEEeeccEEEEEEECCCCEEEEEECCCCC
Confidence 35789999999999999999999999999999999999999999999887643
No 8
>PRK05101 galactokinase; Provisional
Probab=99.71 E-value=2.1e-17 Score=123.81 Aligned_cols=62 Identities=26% Similarity=0.394 Sum_probs=55.5
Q ss_pred hhhhhccee--E-----EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCC
Q psy7885 5 VNLIGEHID--Y-----CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQ 66 (79)
Q Consensus 5 ~~~~~~~f~--y-----~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~ 66 (79)
.+++.+.|+ | .+++|||||||+|||+||+||+|||+||++++++++++++++.+++.+.+++
T Consensus 4 ~~~~~~~f~~~fg~~p~~~~~APgRvnL~GeH~Dy~gg~vL~~AId~~~~v~i~~~~~~~i~v~s~~~~ 72 (382)
T PRK05101 4 KQKTQSLFAQQFGYPPTHTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAKRDDRIVRVIAADYD 72 (382)
T ss_pred HHHHHHHHHHHhCCCCCeEEECCceEEEeccceeecCCEEEEEEecccEEEEEEECCCCEEEEEECCCC
Confidence 345667777 6 7889999999999999999999999999999999999999999999887763
No 9
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=99.69 E-value=3.8e-17 Score=121.95 Aligned_cols=61 Identities=33% Similarity=0.544 Sum_probs=54.3
Q ss_pred hhhhccee--E-----EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCC
Q psy7885 6 NLIGEHID--Y-----CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQ 66 (79)
Q Consensus 6 ~~~~~~f~--y-----~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~ 66 (79)
+.+.+.|+ | ++++|||||||+|||+||+||+|||+||++++++++++++++.+++.+.+.+
T Consensus 2 ~~~~~~f~~~fg~~p~~~~~APgrv~L~GeH~dy~g~~vl~~AI~~~~~v~~~~~~~~~i~i~~~~~~ 69 (386)
T TIGR00131 2 ESIQKIFASAFGAKPDFTARAPGRVNLIGEHTDYNDGSVLPCAIDFGTLCAVAVRDDKNVRIYLANAD 69 (386)
T ss_pred hHHHHHHHHHHCCCCCEEEECCcceEeeccceeeCCceEEeeEeeccEEEEEEECCCCeEEEEECCCC
Confidence 44566666 6 7789999999999999999999999999999999999999999999887763
No 10
>KOG0631|consensus
Probab=99.68 E-value=4.2e-17 Score=125.94 Aligned_cols=62 Identities=42% Similarity=0.736 Sum_probs=53.0
Q ss_pred EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCc--EEEEEcCCCCcceEEeecCC
Q psy7885 15 CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGD--LNLYNIDDQKYDDYHSTVDT 77 (79)
Q Consensus 15 ~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~--v~i~s~~~~~~~~~~l~l~~ 77 (79)
.+++|||||||||||+||+++.|+|||||+++.+++.+++|.. +++.|.+. ++..+++.+..
T Consensus 40 ~~a~~PgRVnLiGEHiDy~~~sVlpmaid~~~l~~~~~~~d~~~sl~~tN~~~-~f~~~~~~~p~ 103 (489)
T KOG0631|consen 40 FVARAPGRVNLIGEHIDYCGYSVLPMAIDVDTLIAVAPSDDGIVSLRLTNFNP-DFIYFKYPLPS 103 (489)
T ss_pred EEEecCCceecccceeeecCceeeeEEeeeeeEEEEEEcCCCceeEEEecCCC-ccceeeccCCc
Confidence 7899999999999999999999999999999999999999988 55555554 46666666543
No 11
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.49 E-value=3.3e-14 Score=100.62 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=40.5
Q ss_pred CCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCC
Q psy7885 19 VPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDD 65 (79)
Q Consensus 19 APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~ 65 (79)
||||++|+|||+||+||+|||+||++++++++.+++++ +++.+..+
T Consensus 1 aPgkv~L~GEH~v~~g~~al~~aI~~~~~~~~~~~~~~-~~i~~~~~ 46 (273)
T TIGR00549 1 APGKIILFGEHAVVYGEPAIAAPIPLRTTVTVIESSDG-SFIESDLG 46 (273)
T ss_pred CCceEEEEecChhccCCCeeEEEecccEEEEEEEcCCC-ceEecccc
Confidence 79999999999999999999999999999999998776 56655443
No 12
>PRK03817 galactokinase; Provisional
Probab=99.47 E-value=8.1e-14 Score=102.75 Aligned_cols=50 Identities=32% Similarity=0.528 Sum_probs=43.9
Q ss_pred EEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCCC
Q psy7885 16 RYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQK 67 (79)
Q Consensus 16 ~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~~ 67 (79)
.++|||||+|+|||+||+||++|+|||++++++.++++ +.+++.+.+++.
T Consensus 2 ~~~APgrv~L~Geh~d~~~g~~l~~aI~~~~~v~~~~~--~~~~i~~~~~~~ 51 (351)
T PRK03817 2 KVKSPGRVNLIGEHTDYNDGYVLPFAINLYTFLEIEKS--EKFIFYSENFNE 51 (351)
T ss_pred EEEeeeeEEEeccceeeCCCeEEEEEecCcEEEEEEeC--CeEEEEECCCCC
Confidence 57899999999999999999999999999999999875 457887776643
No 13
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.43 E-value=3.2e-13 Score=111.44 Aligned_cols=54 Identities=28% Similarity=0.294 Sum_probs=49.1
Q ss_pred EEEcCCceEEEeeeccc------cCCceeeeeecccc----EEEEEEeCCCCcEEEEEcCCCCc
Q psy7885 15 CRYSVPGRVNLIGEHID------YCRYSVCPMALEQN----ILVAFKCNENGDLNLYNIDDQKY 68 (79)
Q Consensus 15 ~~~~APGRvnliGeHtD------y~gg~Vl~~Ai~~~----~~v~~~~~~d~~v~i~s~~~~~~ 68 (79)
.+++|||||||+||||| |+||.|||+||++. +.+.++++++.++++.+.+++..
T Consensus 610 ~~~~aPgRVnLiGghTDtPpy~~ynGG~VLn~AId~~g~~pi~v~v~~~~d~~irl~S~d~~~~ 673 (974)
T PRK13412 610 VWGRSPVRIDLAGGWTDTPPYCLYSGGNVVNLAIELNGQPPLQVYVKPCSEPHIVLRSIDLGAM 673 (974)
T ss_pred EEEeCceEEeecccCcCCCcccCcCCcEEEEEEEeCCCCccEEEEEEECCCCeEEEEECCCCCc
Confidence 44599999999999999 99999999999997 99999999999999999887543
No 14
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.33 E-value=4.4e-12 Score=94.50 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=45.9
Q ss_pred EEcCCceEEEeeeccccC-CceeeeeeccccEEEEEEeCCCCcEEEEEcCCC
Q psy7885 16 RYSVPGRVNLIGEHIDYC-RYSVCPMALEQNILVAFKCNENGDLNLYNIDDQ 66 (79)
Q Consensus 16 ~~~APGRvnliGeHtDy~-gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~ 66 (79)
.++||||++|+|||+||+ |.++|++||++++++.+++++++.+++.+.+++
T Consensus 2 ~~~APGKl~L~GEhavv~~G~pAl~~aI~~~~~v~i~~~~~~~~~i~s~~~~ 53 (358)
T TIGR01220 2 VVHAPGKLFVAGEYAVVEPGNPAILVAVDRFVTVTVEDADGAADVIISSDLG 53 (358)
T ss_pred eeecceeEEEeeeEEEecCCCeEEEEEEcCcEEEEEEeCCCCceEEEecCCC
Confidence 578999999999999999 667999999999999999998888888887763
No 15
>PLN02677 mevalonate kinase
Probab=99.20 E-value=3.8e-11 Score=91.02 Aligned_cols=49 Identities=22% Similarity=0.338 Sum_probs=40.9
Q ss_pred EEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCC----CCcEEEEEcC
Q psy7885 16 RYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNE----NGDLNLYNID 64 (79)
Q Consensus 16 ~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~----d~~v~i~s~~ 64 (79)
.++||||++|+|||+||+|+++|++||++++++.+++++ .+.+.+...+
T Consensus 4 ~v~apgk~~l~Geh~~~~g~~a~~~ai~~~~~~~~~~~~~~~~~~~i~~~~~d 56 (387)
T PLN02677 4 KARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVSLRFPPSAENDDTLKLQLKD 56 (387)
T ss_pred EEeCCccEEEeeeeeeecCCeeeeeEeeceEEEEEEecCCCCCCCeEEEEcCC
Confidence 578999999999999999999999999999999998743 3455544333
No 16
>PRK03926 mevalonate kinase; Provisional
Probab=99.15 E-value=7.7e-11 Score=84.87 Aligned_cols=45 Identities=22% Similarity=0.352 Sum_probs=39.5
Q ss_pred EEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEE
Q psy7885 16 RYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLY 61 (79)
Q Consensus 16 ~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~ 61 (79)
.++||||+||+|||+||+||.+|++||++++.+.+++++++ +++.
T Consensus 3 ~~~aPgkv~L~Geh~~~~g~~~l~~aI~~~~~v~i~~~~~~-~~i~ 47 (302)
T PRK03926 3 LCSAPGKIYLFGEHAVVYGKPAIACAIDLRTYVRAEFNDDS-IYIE 47 (302)
T ss_pred EEeeeeEEEEEecceeecCCeEEEEEecceEEEEEEECCCc-eEEe
Confidence 57899999999999999999999999999999999887543 4444
No 17
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=98.67 E-value=5.2e-08 Score=70.95 Aligned_cols=49 Identities=14% Similarity=0.098 Sum_probs=43.3
Q ss_pred EEcCCceEEEeeecccc-CCce----eeeeeccccEEEEEEeCCCCcEEEEEcC
Q psy7885 16 RYSVPGRVNLIGEHIDY-CRYS----VCPMALEQNILVAFKCNENGDLNLYNID 64 (79)
Q Consensus 16 ~~~APGRvnliGeHtDy-~gg~----Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~ 64 (79)
.+.|||||||+|+|+|| ++|+ +++++|++...+.+.+++++.+++.+.+
T Consensus 3 ~~~apaKiNL~l~i~~~r~dGyH~l~sl~~~i~l~d~v~i~~~~~~~i~~~~~~ 56 (293)
T TIGR00154 3 VFPSPAKLNLFLYITGKRPDGYHELQTLMQFLDLGDKIIISVRSDDDIRLLKGD 56 (293)
T ss_pred eEeecccEEEEEecCCcCCCCCcceEEEEEEeccCcEEEEEECCCCcEEEeeCC
Confidence 56899999999999998 8888 9999999999999998877778886543
No 18
>KOG1511|consensus
Probab=98.44 E-value=5.6e-07 Score=68.47 Aligned_cols=61 Identities=20% Similarity=0.197 Sum_probs=49.9
Q ss_pred EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCCCcceEEeecCC
Q psy7885 15 CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVDT 77 (79)
Q Consensus 15 ~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~~~~~~~l~l~~ 77 (79)
..++|||+|-|+|||.-.+|...|+.||++++++.+.+..++.+.+.-.+.+ -+.++++.+
T Consensus 5 l~vsaPGKvILfGEHAVVyg~~AlAaai~LrTyl~l~~san~~i~l~l~di~--~~~~w~l~~ 65 (397)
T KOG1511|consen 5 LLVSAPGKVILFGEHAVVYGRTALAAAIDLRTYLRLQTSANDRILLQLPDIS--IEKAWSLAD 65 (397)
T ss_pred eeecCCccEEEeccceeEECCceeEEEeecceeEEEEecCCCeEEEecccCC--ceEEEEhhh
Confidence 3689999999999999999999999999999999999888887777555543 244555554
No 19
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.38 E-value=7.5e-07 Score=63.93 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=42.6
Q ss_pred EEcCCceEEE----eeeccc-cCCceeeeeeccccEEEEEEeCCCCcEEEEEc
Q psy7885 16 RYSVPGRVNL----IGEHID-YCRYSVCPMALEQNILVAFKCNENGDLNLYNI 63 (79)
Q Consensus 16 ~~~APGRvnl----iGeHtD-y~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~ 63 (79)
.+.||||+|| +|+|+| |++..+|++||+++..+.+++.+++.+++.+.
T Consensus 4 ~~~apakinl~l~i~g~~~dg~h~l~si~~ai~l~~~v~v~~~~~~~~~i~~~ 56 (286)
T PRK00128 4 LEKAPAKINLSLDVLGKREDGYHEVEMIMQTIDLADRLEIEKLKEDGIVVESN 56 (286)
T ss_pred EEeccceEEEEeecCccCCCCcceeheeeEecCCCcEEEEEECCCCCEEEEeC
Confidence 4789999999 899999 99999999999999999999887666777643
No 20
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.31 E-value=1.7e-06 Score=63.12 Aligned_cols=48 Identities=17% Similarity=0.367 Sum_probs=42.4
Q ss_pred EEcCCceEEE----eeeccc-cCCceeeeeeccccEEEEEEeCCCCcEEEEEc
Q psy7885 16 RYSVPGRVNL----IGEHID-YCRYSVCPMALEQNILVAFKCNENGDLNLYNI 63 (79)
Q Consensus 16 ~~~APGRvnl----iGeHtD-y~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~ 63 (79)
.++||||+|| +|+|.| |+.+.+++++|+++..+.+++.+++.+++.+.
T Consensus 5 ~~~apakiNL~L~i~g~~~dGy~~l~~~~~~i~l~d~v~v~~~~~~~~~~~~~ 57 (312)
T PRK02534 5 TLIAPAKINLHLEILGDRPDGFHELAMVMQSIDLADRLELRNNGDGTIRLHCD 57 (312)
T ss_pred EEEeceEEEeccccCccCCCCCCceEEEEEECCCCCEEEEEECCCCcEEEEEC
Confidence 4689999999 899999 99999999999999999999887766777543
No 21
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=98.07 E-value=5.7e-06 Score=61.54 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=46.8
Q ss_pred EEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCC
Q psy7885 16 RYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQ 66 (79)
Q Consensus 16 ~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~ 66 (79)
.++|||++-|+|||.-..|.+.+++||+..+++.++.+++..+.+.+.+..
T Consensus 2 ~~~aPgKliL~GEHAVVyG~pAI~~aI~~~~~v~~~~s~~~~~~i~~~~~~ 52 (307)
T COG1577 2 SVSAPGKLILFGEHAVVYGYPAIAAAIDLRVTVTISESDSNKIVIESSDLK 52 (307)
T ss_pred cccccccEEEEecceeeeCCchhheeeeeeEEEEEEecCCCcEEEeccCCC
Confidence 478999999999999999999999999999999999998888888887764
No 22
>PTZ00298 mevalonate kinase; Provisional
Probab=97.22 E-value=0.00042 Score=51.03 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=32.4
Q ss_pred EEcCCceEEEeeeccccCCceeeeeeccccEEEEEEe
Q psy7885 16 RYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKC 52 (79)
Q Consensus 16 ~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~ 52 (79)
...|||++-|+|||.+..|.+.+..+|++...+.+..
T Consensus 12 ~~~~~~kvil~GEHaVvyg~~aI~~~I~~~d~~~i~~ 48 (328)
T PTZ00298 12 KHIGYGKVILFGEHFVVYGAEAIVAGIDEYTECRLEL 48 (328)
T ss_pred CCCcCeeEEEEecceeecCCchhhhecccceEEEEEE
Confidence 3579999999999999999999999999986655554
No 23
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=96.92 E-value=0.0017 Score=48.89 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=42.3
Q ss_pred EEcCCceEEEeeecccc------CCceeeeeeccccEEEEEEeCCCCcEEEE
Q psy7885 16 RYSVPGRVNLIGEHIDY------CRYSVCPMALEQNILVAFKCNENGDLNLY 61 (79)
Q Consensus 16 ~~~APGRvnliGeHtDy------~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~ 61 (79)
+.+||-|+.+.|.=||+ .||.||.++||+.+++.+.+..|.++++.
T Consensus 3 i~raPLRItfgGGGTDvepy~~k~GGaVlnatIdky~y~~i~~~~d~~I~~~ 54 (333)
T COG2605 3 ISRAPLRITFGGGGTDVEPYCSKHGGAVLNATIDKYIYVTIEKGFDDEIRVR 54 (333)
T ss_pred ccccceEEEecCCCcCchHHHHhcCCEEEEeeeeeEEEEEEccCCCceEEEe
Confidence 45799999999999998 59999999999999999999999999887
No 24
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=92.34 E-value=0.49 Score=34.22 Aligned_cols=47 Identities=23% Similarity=0.444 Sum_probs=36.8
Q ss_pred EEcCCceEEEeeecc-----c-cCCceeeeeeccccEEEEEEeCCCCcEEEEEc
Q psy7885 16 RYSVPGRVNLIGEHI-----D-YCRYSVCPMALEQNILVAFKCNENGDLNLYNI 63 (79)
Q Consensus 16 ~~~APGRvnliGeHt-----D-y~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~ 63 (79)
.++||+++||.+ |+ | |+.--.+..+|++.-.+.+++.+++.+++.+.
T Consensus 8 ~~~apaKiNL~L-~v~~~r~dGyH~l~s~~~~i~l~D~v~i~~~~~~~~~i~~~ 60 (271)
T PRK00343 8 DWPAPAKLNLFL-HITGRRADGYHELQTLFQFLDWGDTLHFEVRDDGEIRLLTP 60 (271)
T ss_pred EEeeeeeEEEEe-ecCCcCCCCCCeeeEEEEEcccceEEEEEECCCCcEEEeCC
Confidence 357999999998 55 2 55556799999999999999877766777643
No 25
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=86.55 E-value=2.2 Score=33.58 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=39.4
Q ss_pred EEcCCceEEEeeeccccC-CceeeeeeccccEEEEEEeCCCC------cEEEEEcCCC
Q psy7885 16 RYSVPGRVNLIGEHIDYC-RYSVCPMALEQNILVAFKCNENG------DLNLYNIDDQ 66 (79)
Q Consensus 16 ~~~APGRvnliGeHtDy~-gg~Vl~~Ai~~~~~v~~~~~~d~------~v~i~s~~~~ 66 (79)
+++|||++=|.||..--- +...+-.|++.++++.+.+.+++ .++|.|.++.
T Consensus 1 ~~sAPGKlliAGgYlVLep~y~aiVval~~r~~a~v~~~~~~~~~~~~~i~v~SpQf~ 58 (454)
T TIGR01219 1 VASAPGKVLMAGGYLVLDKPYAGLVLGLNARFYAIVKPINEEVGAWKWDVRVKSPQFS 58 (454)
T ss_pred CcccCceEEEecceEEecCCCcEEEEEecceEEEEEeecccccccCcceEEEeCCCCC
Confidence 368999999999987543 55678889999999998765321 3678888875
No 26
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=65.17 E-value=29 Score=25.26 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=36.8
Q ss_pred EEcCCceEEEe----eeccc-cCCceeeeeecc-ccEEEEEEeCCCCcEEEEE
Q psy7885 16 RYSVPGRVNLI----GEHID-YCRYSVCPMALE-QNILVAFKCNENGDLNLYN 62 (79)
Q Consensus 16 ~~~APGRvnli----GeHtD-y~gg~Vl~~Ai~-~~~~v~~~~~~d~~v~i~s 62 (79)
.+.||++|||. |-.-| |+.--.+-.+|+ ..-.+.+++.+++.+++..
T Consensus 8 ~~~apaKINL~L~v~~kr~DGyH~l~sl~~~i~~~~D~l~i~~~~~~~i~~~~ 60 (296)
T PRK14615 8 TLRSGCKVNLDLRITGVRPDGYHEIDSLFLPLPEPHDELHVRVTDAPGITVTC 60 (296)
T ss_pred EEEecceEEeccccCCcCCCCCcceEEEEEECCCCCcEEEEEECCCCCEEEEE
Confidence 46899999984 77777 888899999998 4778888887665566654
No 27
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=64.07 E-value=9.9 Score=28.91 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=22.6
Q ss_pred EcCCceEEEeeeccccCCcee-eeeeccccEEEE
Q psy7885 17 YSVPGRVNLIGEHIDYCRYSV-CPMALEQNILVA 49 (79)
Q Consensus 17 ~~APGRvnliGeHtDy~gg~V-l~~Ai~~~~~v~ 49 (79)
.+|||++=|+|+.+-.-+|.. .+.|++++....
T Consensus 6 fSaPGk~LlaGdYs~lv~glsahaia~nkr~~cs 39 (337)
T COG3890 6 FSAPGKLLLAGDYSILVEGLSAHAIAINKRAFCS 39 (337)
T ss_pred ecCCCceEEeccceeeeecceeeEEEeccccccc
Confidence 689999999996444444444 677777765443
No 28
>KOG0180|consensus
Probab=57.46 E-value=15 Score=26.11 Aligned_cols=35 Identities=20% Similarity=0.059 Sum_probs=24.0
Q ss_pred ccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCC
Q psy7885 31 DYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDD 65 (79)
Q Consensus 31 Dy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~ 65 (79)
-||||.|++||-...+.++.-.|-.-+..-.+.++
T Consensus 5 synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf 39 (204)
T KOG0180|consen 5 SYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDF 39 (204)
T ss_pred eecCceEEEEeCCceEEEEeccccceeeeeeeccc
Confidence 58999999999998777776665433333334444
No 29
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=50.50 E-value=15 Score=28.30 Aligned_cols=42 Identities=19% Similarity=0.312 Sum_probs=35.0
Q ss_pred EEEcCCceEEEeeec----------cccCCceeeeeeccccEEEEEEeCCCC
Q psy7885 15 CRYSVPGRVNLIGEH----------IDYCRYSVCPMALEQNILVAFKCNENG 56 (79)
Q Consensus 15 ~~~~APGRvnliGeH----------tDy~gg~Vl~~Ai~~~~~v~~~~~~d~ 56 (79)
.++.-+||+.-+|.+ +|..|++|+|.-||..+.+....+...
T Consensus 30 ~v~i~~GkI~~vg~~~~~~~~~~~viD~~G~~V~PGLID~HtHl~~~~~~~~ 81 (406)
T COG1228 30 AVLIEDGKIVAVGPEEIDIPAGAEVIDAKGKTVTPGLIDAHTHLGFGGSRGG 81 (406)
T ss_pred eEEEECCEEEEecCcccCCCCCCeEEeCCCCEEccceeeccccccccCCccc
Confidence 345569999999988 899999999999999999887665433
No 30
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=47.69 E-value=64 Score=23.02 Aligned_cols=44 Identities=23% Similarity=0.251 Sum_probs=34.4
Q ss_pred EcCCceEEEe----eeccc-cCCceeeeeeccccEEEEEEeCCCCcEEEE
Q psy7885 17 YSVPGRVNLI----GEHID-YCRYSVCPMALEQNILVAFKCNENGDLNLY 61 (79)
Q Consensus 17 ~~APGRvnli----GeHtD-y~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~ 61 (79)
..||+++||. |---| |+.--.|-+||+++-.+.+.+.++ .+++.
T Consensus 5 ~~a~aKiNl~L~i~~~~~dgyH~l~sl~~al~l~d~v~i~~~~~-~~~i~ 53 (276)
T PRK14612 5 RLAPAKVNLGLSVLGRREDGYHELHTLMVPLDVGDRLEVEPIAS-GLELR 53 (276)
T ss_pred EeeCcEEeeccccCCCCCCCCceeEEEEEECCCCCEEEEEECCC-cEEEE
Confidence 5799999974 66666 888889999999999999987543 35554
No 31
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=43.25 E-value=50 Score=23.61 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=31.4
Q ss_pred EcCCceEEEe----eeccc-cCCceeeeeeccccEEEEEEeCC
Q psy7885 17 YSVPGRVNLI----GEHID-YCRYSVCPMALEQNILVAFKCNE 54 (79)
Q Consensus 17 ~~APGRvnli----GeHtD-y~gg~Vl~~Ai~~~~~v~~~~~~ 54 (79)
+.||+++||. |..-| |+.-..+-.+|++.-.+.+.+.+
T Consensus 4 ~~a~aKiNL~L~i~~kr~dgyH~l~s~~~ai~l~d~v~i~~~~ 46 (275)
T PRK14611 4 LLSPAKVNLGLWILGKRPDGYHEIFTIYHTIDLYDRIYIKEHH 46 (275)
T ss_pred eeecceEEeeeccCcCCCCCcchhhheeEeccCCcEEEEEECC
Confidence 5799999985 66666 88888899999999999998754
No 32
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=41.62 E-value=14 Score=29.37 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=16.6
Q ss_pred CCceEEEee-eccccCCcee
Q psy7885 19 VPGRVNLIG-EHIDYCRYSV 37 (79)
Q Consensus 19 APGRvnliG-eHtDy~gg~V 37 (79)
-=|||.+.| ||+.|-+|++
T Consensus 410 p~gRIh~AgtEhas~~~Gw~ 429 (450)
T COG1231 410 PHGRIHFAGTEHASEFGGWL 429 (450)
T ss_pred CCCceEEeeecccccccchh
Confidence 359999999 9999999864
No 33
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=38.64 E-value=92 Score=22.33 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=30.3
Q ss_pred EEcCCceEEEe----eeccc-cCCceeeeeeccccEEEEEEeCC
Q psy7885 16 RYSVPGRVNLI----GEHID-YCRYSVCPMALEQNILVAFKCNE 54 (79)
Q Consensus 16 ~~~APGRvnli----GeHtD-y~gg~Vl~~Ai~~~~~v~~~~~~ 54 (79)
.+.||++|||. |.=-| |+.--.+.++|+++-.+.+.+.+
T Consensus 5 ~~~a~aKiNL~L~i~~~r~dgyH~l~si~~~i~l~d~v~v~~~~ 48 (287)
T PRK14616 5 SVKAFAKINLGLLITGKRPDGYHTLETIFAPINWYDTLTFSPSD 48 (287)
T ss_pred EEeeceeEEeeeecCCCCCCCccceeEEEEEcCCCCEEEEEECC
Confidence 36799999985 44334 78888899999999899888753
No 34
>PF06554 Olfactory_mark: Olfactory marker protein; InterPro: IPR009103 Olfactory marker protein (OMP) is a highly expressed, cytoplasmic protein found in mature olfactory sensory receptor neurons of all vertebrates. OMP is a modulator of the olfactory signal transduction cascade. The crystal structure of OMP reveals a beta sandwich consisting of eight strands in two sheets with a jelly-roll topology []. Three highly conserved regions have been identified as possible protein-protein interaction sites in OMP, indicating a possible role for OMP in modulating such interactions, thereby acting as a molecular switch [].; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0007608 sensory perception of smell; PDB: 1ZRI_A 1JYT_A 1JOD_B 1F35_A 1JOB_A.
Probab=32.43 E-value=44 Score=22.70 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=13.0
Q ss_pred EEEcCCceEEEeeecccc
Q psy7885 15 CRYSVPGRVNLIGEHIDY 32 (79)
Q Consensus 15 ~~~~APGRvnliGeHtDy 32 (79)
+....||||++.|--+=+
T Consensus 59 v~l~~pGkvtItgtsQ~W 76 (151)
T PF06554_consen 59 VSLDKPGKVTITGTSQLW 76 (151)
T ss_dssp EEESSSEEEEEEEB-TTS
T ss_pred EEeCCCCeEEEEeecccc
Confidence 556789999999965433
No 35
>COG1362 LAP4 Aspartyl aminopeptidase [Amino acid transport and metabolism]
Probab=32.08 E-value=46 Score=26.45 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=22.3
Q ss_pred EEEeeeccc-----------------------cCCceeeeeeccccEEEE
Q psy7885 23 VNLIGEHID-----------------------YCRYSVCPMALEQNILVA 49 (79)
Q Consensus 23 vnliGeHtD-----------------------y~gg~Vl~~Ai~~~~~v~ 49 (79)
++++|.||| |+||.-+...++++.-++
T Consensus 80 f~IigaHtDSP~l~lKp~p~~~~~g~~~~~~e~YGG~~~~~WldrdLsia 129 (437)
T COG1362 80 FRIIGAHTDSPRLRLKPNPDIEVEGYLQLGTEVYGGIILYTWLDRDLSIA 129 (437)
T ss_pred eEEEEeecCCCCcccCCCchhhhcceeEEeeEecCCeeecceecCcccee
Confidence 578899988 789999899999887554
No 36
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.
Probab=31.80 E-value=1.6e+02 Score=19.76 Aligned_cols=50 Identities=12% Similarity=0.136 Sum_probs=28.7
Q ss_pred ccccCCceeeeeeccc-----------cEEEEEEeCCCC-cEEE--EEcCCCCcceEEeecCCC
Q psy7885 29 HIDYCRYSVCPMALEQ-----------NILVAFKCNENG-DLNL--YNIDDQKYDDYHSTVDTF 78 (79)
Q Consensus 29 HtDy~gg~Vl~~Ai~~-----------~~~v~~~~~~d~-~v~i--~s~~~~~~~~~~l~l~~~ 78 (79)
...|.|+-+|+..++. .+.+++..++++ .+.| .|.+.++...++++++.+
T Consensus 76 fs~~~g~~~l~~~v~~~~~~~~~~~~~~ld~sA~~~~~~~~~~v~vvN~~~~~~~~~~l~l~g~ 139 (189)
T smart00813 76 FSKHQGGTVLPVTISSPTYDGEDSDVPALDASASKDEDGGSLTVKVVNRSPEEAVTVTISLRGL 139 (189)
T ss_pred hhhhCCceEEEEEeeCCccccCcccCCcEEEEEEEeCCCCEEEEEEEeCCCCcCEEEEEEecCC
Confidence 3467788888877653 345666665443 4444 454443334666666653
No 37
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=28.33 E-value=1.3e+02 Score=21.70 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=29.8
Q ss_pred EEcCCceEEEe----eeccc-cCCceeeeeec-cccEEEEEEeCCCCcEEEE
Q psy7885 16 RYSVPGRVNLI----GEHID-YCRYSVCPMAL-EQNILVAFKCNENGDLNLY 61 (79)
Q Consensus 16 ~~~APGRvnli----GeHtD-y~gg~Vl~~Ai-~~~~~v~~~~~~d~~v~i~ 61 (79)
.+.||++|||. |.- | |+.--.+-..| +..=.+.+.+.+++.+++.
T Consensus 2 ~~~apaKINL~L~v~~kr-dGyH~l~s~~~~i~~l~D~l~i~~~~~~~~~i~ 52 (257)
T PRK04181 2 VMKAYAKVNIFLKILGKR-GNYHELISRFVLVKDLFDEIEFVPKSAESFELI 52 (257)
T ss_pred CccccceEEEEEeeCcCC-CCCceeheeeeEccCcCcEEEEEECCCCCEEEE
Confidence 46799999984 655 6 55555666677 7766777776444456664
No 38
>PTZ00204 hypothetical protein; Provisional
Probab=27.95 E-value=57 Score=21.06 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=22.5
Q ss_pred eccccCCceeeeeeccccEEEEEEeCCCCcEEEE
Q psy7885 28 EHIDYCRYSVCPMALEQNILVAFKCNENGDLNLY 61 (79)
Q Consensus 28 eHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~ 61 (79)
|--||..++|.-+|+.+.-+.+ ..+ +++.++.
T Consensus 57 edwdysn~fvvvc~v~lenia~-ner-eg~chlt 88 (120)
T PTZ00204 57 EDWDYSNSFVVVCAVLLENIAA-NER-EGKCHLT 88 (120)
T ss_pred ccccccCceEEEEeehhhhhcc-ccc-cceEEEE
Confidence 6789999999999999874433 444 3455543
No 39
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=27.45 E-value=1.9e+02 Score=20.80 Aligned_cols=46 Identities=13% Similarity=0.215 Sum_probs=33.6
Q ss_pred EEcCCceEEEe----eeccc-cCCceeeeeeccccEEEEEEeCCC-CcEEEE
Q psy7885 16 RYSVPGRVNLI----GEHID-YCRYSVCPMALEQNILVAFKCNEN-GDLNLY 61 (79)
Q Consensus 16 ~~~APGRvnli----GeHtD-y~gg~Vl~~Ai~~~~~v~~~~~~d-~~v~i~ 61 (79)
.+.||+++||. |-.-| |+.--.+-++++..=.+.+++.++ ..+++.
T Consensus 5 ~~~apAKINL~L~v~g~r~dGyH~l~s~~~~i~l~D~l~i~~~~~~~~~~~~ 56 (283)
T PRK14610 5 LVKAPAKINLFLHIVGKSESGYHLLESLFVFVNLYDFLEIKIGSKNRGVEFV 56 (283)
T ss_pred EEeecceEEeeeccCCcCCCCcchhheeeEEcCCCCEEEEEECCCCCeEEEe
Confidence 46799999985 55556 777777788888888888887654 246664
No 40
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=26.45 E-value=33 Score=25.78 Aligned_cols=11 Identities=36% Similarity=0.244 Sum_probs=9.3
Q ss_pred EEcCCceEEEe
Q psy7885 16 RYSVPGRVNLI 26 (79)
Q Consensus 16 ~~~APGRvnli 26 (79)
.+|||+||++=
T Consensus 223 FASSP~RVlIH 233 (287)
T PF05582_consen 223 FASSPKRVLIH 233 (287)
T ss_pred ccCCccceEEe
Confidence 37999999975
No 41
>KOG2445|consensus
Probab=25.54 E-value=1.3e+02 Score=23.25 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=29.6
Q ss_pred eEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEE
Q psy7885 22 RVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLY 61 (79)
Q Consensus 22 RvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~ 61 (79)
-|.+++||-||+| .|--+.-|..-.+..+..+|+.+|+-
T Consensus 277 ~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 277 PVEKVSELDDHNG-EVWRVRWNMTGTILSSTGDDGCVRLW 315 (361)
T ss_pred ceEEeeeccCCCC-ceEEEEEeeeeeEEeecCCCceeeeh
Confidence 3678899999885 46666667666777787888888874
No 42
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=23.42 E-value=49 Score=25.95 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=14.9
Q ss_pred hhhhhhhcceeEEEEcCCceEEEee
Q psy7885 3 GRVNLIGEHIDYCRYSVPGRVNLIG 27 (79)
Q Consensus 3 ~r~~~~~~~f~y~~~~APGRvnliG 27 (79)
+-+..+++.|. ++..+-||+|+-|
T Consensus 356 ~QV~rLree~~-IY~v~sGRi~vaG 379 (396)
T COG1448 356 EQVDRLREEFG-IYLVASGRINVAG 379 (396)
T ss_pred HHHHHHHHhcc-EEEecCCeeeecc
Confidence 34445555555 3345679999988
No 43
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=23.34 E-value=2.9e+02 Score=19.91 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=33.8
Q ss_pred EEcCCceEEEe----eeccc-cCCceeeeeeccccEEEEEEeCCCCcEEEEE
Q psy7885 16 RYSVPGRVNLI----GEHID-YCRYSVCPMALEQNILVAFKCNENGDLNLYN 62 (79)
Q Consensus 16 ~~~APGRvnli----GeHtD-y~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s 62 (79)
.+.||++|||. |---| |+.--.+-..|+..=.+.+++.++..+++..
T Consensus 8 ~~~a~aKiNL~L~i~~kr~dGyH~l~s~~~~i~l~D~l~i~~~~~~~i~~~~ 59 (290)
T PRK14608 8 TEFAPAKINLALHVTGRRADGYHLLESLVAFADVGDRLTLEPAEALSLTVSG 59 (290)
T ss_pred EEEeceeEEeeeccCCCCCCCCcceeEEEEECCCCcEEEEEECCCCcEEEeC
Confidence 36799999985 44445 7777777778888878888876555566653
No 44
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=23.31 E-value=39 Score=25.33 Aligned_cols=11 Identities=45% Similarity=0.495 Sum_probs=9.3
Q ss_pred EEcCCceEEEe
Q psy7885 16 RYSVPGRVNLI 26 (79)
Q Consensus 16 ~~~APGRvnli 26 (79)
.+|||+||++=
T Consensus 222 FASSP~RVlIH 232 (283)
T TIGR02855 222 FASSPSRVNIH 232 (283)
T ss_pred ccCCccceEEe
Confidence 47999999975
No 45
>KOG1412|consensus
Probab=21.34 E-value=75 Score=24.81 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=20.3
Q ss_pred chhhhhhhccee-E------------------EEEcCCceEEEeee
Q psy7885 2 PGRVNLIGEHID-Y------------------CRYSVPGRVNLIGE 28 (79)
Q Consensus 2 ~~r~~~~~~~f~-y------------------~~~~APGRvnliGe 28 (79)
|+-|+.+.++-. | ++..+-||+|+-|=
T Consensus 342 PGtWDHI~~QiGMFSyTGLtp~qV~~li~~h~vyLl~~GRInisGL 387 (410)
T KOG1412|consen 342 PGTWDHITQQIGMFSYTGLTPAQVDHLIENHKVYLLSDGRINISGL 387 (410)
T ss_pred CCcHHHHHhhccceeecCCCHHHHHHHHHhceEEEecCCcEeeecc
Confidence 677777777766 3 55678999999883
No 46
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=20.93 E-value=34 Score=26.13 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=11.6
Q ss_pred cCCceEEEeeeccccC
Q psy7885 18 SVPGRVNLIGEHIDYC 33 (79)
Q Consensus 18 ~APGRvnliGeHtDy~ 33 (79)
.+.....-.|+|+||.
T Consensus 185 ~~~~~~~~~GaHtD~G 200 (322)
T COG3491 185 PAREGADGVGAHTDYG 200 (322)
T ss_pred cccccccccccccCCC
Confidence 3455566679999995
No 47
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=20.37 E-value=61 Score=18.00 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=14.6
Q ss_pred cccCCceeeeeeccccEEE
Q psy7885 30 IDYCRYSVCPMALEQNILV 48 (79)
Q Consensus 30 tDy~gg~Vl~~Ai~~~~~v 48 (79)
+|..|..++|.-||..+.+
T Consensus 25 iD~~g~~v~PG~ID~H~H~ 43 (68)
T PF13594_consen 25 IDAKGKYVMPGFIDMHTHL 43 (68)
T ss_dssp EEETTCEEEE-EEEEEE-T
T ss_pred EECCCCEEeCCeEeeeecc
Confidence 6999999999999977653
No 48
>PF11512 Atu4866: Agrobacterium tumefaciens protein Atu4866; InterPro: IPR020955 The function of the proteins in this entry is not known, though Atu4866 from Agrobacterium tumefaciens has been structurally characterised. Atu4866 adopts a streptavidin-like fold and has a beta-barrel/sandwich which is formed by eight antiparallel beta-strands []. Atu4866 has a potential ligand-binding site where it has a stretch of conserved residues on the surface. ; PDB: 2JMB_A.
Probab=20.32 E-value=42 Score=20.58 Aligned_cols=16 Identities=44% Similarity=0.829 Sum_probs=13.2
Q ss_pred CceEEEeeeccccCCc
Q psy7885 20 PGRVNLIGEHIDYCRY 35 (79)
Q Consensus 20 PGRvnliGeHtDy~gg 35 (79)
-||-.+-|+|+||-+-
T Consensus 39 qG~Y~v~G~~I~Y~DD 54 (78)
T PF11512_consen 39 QGRYEVTGDHIDYWDD 54 (78)
T ss_dssp EEEEEEETTEEEEB-T
T ss_pred eEEEEEECCEEEEEec
Confidence 5888999999999764
Done!